BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031311
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXB1|U548_ARATH UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2
SV=1
Length = 205
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 106/126 (84%)
Query: 36 HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 95
HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV+ES + +K A FG+GSGT
Sbjct: 80 HFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDESRKSRKGPAHFGYGSGT 139
Query: 96 LQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
LQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GYPYV+LRQK+FA S AV
Sbjct: 140 LQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYVKLRQKHFARHSSEAVL 199
Query: 156 KHLTAS 161
KH+ AS
Sbjct: 200 KHVNAS 205
>sp|Q86JL6|U548_DICDI UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3
SV=1
Length = 216
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 36 HFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSG 94
HF L+W F TPI G + K+ W+ +I Y+ + ++ + FG+ G
Sbjct: 78 HFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDG-DQEDGSIKFGYSYG 136
Query: 95 TLQGHLLAGEERFSIE-------LDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFA 147
TL+ H+ GEERF IE D V+YE++SFS+P+ +LS +GYP + Q F
Sbjct: 137 TLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQLGYPVTRYFQNKFV 196
Query: 148 HQSVNAVKKHLTAS 161
S N + K + ++
Sbjct: 197 VDSCNQMLKAVGSN 210
>sp|Q9RST8|Y2035_DEIRA UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1
Length = 198
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 45 DPKTPI-QNGVKFCVCVKEFLPWVTLP--LQIVYVNESIRKKKTAASFGFGSGTLQGHLL 101
+ TP+ + G + V+ F PW L + N + +GFG GTL GHL+
Sbjct: 80 EASTPLSRQGATVVLLVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLV 139
Query: 102 AGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQ 149
GEERF +E D VW+++ +FS+ A S P V Q+ A
Sbjct: 140 RGEERFLLERDAGGAVWFDLTTFSRAALPFSRFAQPLVGAAQRRGARH 187
>sp|Q81J80|HSLO_BACCR 33 kDa chaperonin OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=hslO PE=3 SV=1
Length = 291
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 76 VNESIRKKKT--AASFGFG----SGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPAD 129
V+E+ R+ T AS G +GT+ G +L GE++ +I+++ N + +V D
Sbjct: 26 VSEAQRRHDTWRTASAALGRSLTAGTMMGAMLKGEQKLTIKVEGNGPIGPILVDAHANGD 85
Query: 130 FLSFIGYPYVQ 140
++ P+V
Sbjct: 86 VRGYVTNPHVD 96
>sp|B7HJ06|HSLO_BACC4 33 kDa chaperonin OS=Bacillus cereus (strain B4264) GN=hslO PE=3
SV=1
Length = 291
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 76 VNESIRKKKT--AASFGFG----SGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPAD 129
V+E+ R+ T AS G +GT+ G +L GE++ +I+++ N + +V D
Sbjct: 26 VSEAQRRHDTWRTASAALGRSLTAGTMMGAMLKGEQKLTIKVEGNGPIGPILVDAHANGD 85
Query: 130 FLSFIGYPYVQ 140
++ P+V
Sbjct: 86 VRGYVTNPHVD 96
>sp|Q3U034|METL4_MOUSE Methyltransferase-like protein 4 OS=Mus musculus GN=Mettl4 PE=2
SV=1
Length = 471
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 38 GLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQ 97
GL F+ P Q+G C+ TLPL ++E K S LQ
Sbjct: 168 GLRSGFLYPLVEKQDGSSGCI---------TLPLDACNLSELCEMAKHLPSLN--EMELQ 216
Query: 98 GHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKH 157
L G++ IELD ++Q+ SFSK ++ +G Y+ Q F ++ ++
Sbjct: 217 TLQLMGDDVSVIELDLSSQIIENNSSFSK---MITLMGQKYLLPPQSSFLLSDISCMQPL 273
Query: 158 LTA 160
L
Sbjct: 274 LNC 276
>sp|A7TT43|VPS10_VANPO Vacuolar protein sorting/targeting protein 10 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=VPS10 PE=3
SV=1
Length = 1601
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 38 GLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKK-KTAASFGF--GSG 94
G +W+F++P NG K+ C + L +L L IR + ++FG G
Sbjct: 1105 GSDWSFINPPLKDSNGKKY-TCSGKGLKKCSLHLHGYTERNDIRDTFSSGSAFGMLIAVG 1163
Query: 95 TLQGHLLAGEERFSIELDDNNQVWYEI 121
+ HLL +E + D W E+
Sbjct: 1164 NVGEHLLPKDECSTFMTIDGGATWTEV 1190
>sp|A9VN80|HSLO_BACWK 33 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4)
GN=hslO PE=3 SV=1
Length = 291
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 81 RKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYV 139
R A +GT+ G +L GE++ +I+++ N + +V D ++ P+V
Sbjct: 37 RTASAALGRSLTAGTMMGAMLKGEQKLTIKVEGNGPIGPILVDAHANGDVRGYVTNPHV 95
>sp|Q9N0A4|PGES2_MACFA Prostaglandin E synthase 2 OS=Macaca fascicularis GN=PTGES2 PE=1
SV=1
Length = 377
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 56 FCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNN 115
FC V+ FL + LP Q+V VN +R A F S L+A E S +L+D++
Sbjct: 112 FCSKVRAFLDFHALPYQVVEVNPVLR-----AEIKFSSYRKVPILVAQEGESSQQLNDSS 166
Query: 116 QVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 159
V S +L G P ++ Y A ++VN K +T
Sbjct: 167 ------VIISALKTYL-VSGQPLEEIITYYPAMKAVNDQGKEVT 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,435,618
Number of Sequences: 539616
Number of extensions: 2244138
Number of successful extensions: 3613
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3606
Number of HSP's gapped (non-prelim): 10
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)