Query 031311
Match_columns 161
No_of_seqs 116 out of 171
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 19:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cnr_A Type IV fimbriae assemb 87.7 1.7 5.7E-05 32.0 6.6 49 32-80 23-74 (117)
2 2pcs_A Conserved protein; stru 73.8 21 0.00072 25.3 12.6 72 88-159 75-147 (162)
3 1ywu_A Hypothetical protein PA 70.7 17 0.00057 27.0 7.2 40 39-78 60-102 (149)
4 2l74_A Putative uncharacterize 66.6 20 0.00067 26.5 6.8 40 39-78 58-100 (145)
5 2d4r_A Hypothetical protein TT 65.2 27 0.00094 23.2 10.5 69 88-159 74-143 (147)
6 3ggn_A Uncharacterized protein 55.9 53 0.0018 23.5 9.8 85 65-160 58-146 (155)
7 3ijt_A SMU.440, putative uncha 52.1 67 0.0023 23.5 12.0 127 16-159 23-153 (155)
8 2ftc_I Mitochondrial ribosomal 41.7 26 0.00089 25.7 3.7 63 17-79 25-95 (118)
9 2leq_A Uncharacterized protein 34.5 1E+02 0.0036 20.6 13.1 98 15-122 9-112 (146)
10 2rde_A Uncharacterized protein 34.1 85 0.0029 24.4 5.9 41 39-79 164-211 (251)
11 2ns9_A Hypothetical protein AP 31.9 1.2E+02 0.0042 20.7 13.6 131 16-160 18-156 (157)
12 1ffk_F Ribosomal protein L10E; 28.5 36 0.0012 26.4 2.7 61 17-79 54-126 (157)
13 2lio_A Uncharacterized protein 28.2 1.8E+02 0.006 21.3 7.0 64 51-128 40-106 (136)
14 3tw5_A Transglutaminase elicit 24.4 1.3E+02 0.0043 26.5 5.6 45 66-119 263-318 (367)
15 3bbo_O Ribosomal protein L16; 22.5 26 0.0009 26.3 0.9 63 17-79 40-108 (135)
No 1
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=87.72 E-value=1.7 Score=32.02 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=36.7
Q ss_pred hcCccc-ccceeEEcCCCCCcCCcEEEEeeecccc--eeeeceEEEEEeecc
Q 031311 32 RVFWHF-GLNWAFVDPKTPIQNGVKFCVCVKEFLP--WVTLPLQIVYVNESI 80 (161)
Q Consensus 32 ~~W~~~-~~~w~~V~~~~p~~~G~~V~v~~g~~~~--~~~~pcRVv~V~de~ 80 (161)
..+-.+ ..||++|.++.|...|+.|.+.+..... .+....+|+|+....
T Consensus 23 ~~y~~~is~GGlFI~T~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~ 74 (117)
T 3cnr_A 23 SAYMPFVKGGGIFVPTPKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAG 74 (117)
T ss_dssp HHEETTBTTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC-
T ss_pred HHhhcccCCCeEEEeeCCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCC
Confidence 345433 5789999999999999999998864332 356779999998643
No 2
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=73.82 E-value=21 Score=25.30 Aligned_cols=72 Identities=7% Similarity=0.027 Sum_probs=42.2
Q ss_pred eeEEeeccCC-CCccceeEEEEEEEeCCCeEEEEEEEeecCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 031311 88 SFGFGSGTLQ-GHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 159 (161)
Q Consensus 88 r~GFaYGTLp-GH~e~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~~~v~ 159 (161)
++-|.+.... +-...++-.+.++-.++|...++...=-.+...+..++.++.....+++....++++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e 147 (162)
T 2pcs_A 75 HYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIA 147 (162)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6555543221 11234666777765234433333322122344457778888877888888888888888764
No 3
>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1
Probab=70.73 E-value=17 Score=27.03 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=30.0
Q ss_pred cceeEEcCCC--CCcCCcEEEEeeecc-cceeeeceEEEEEee
Q 031311 39 LNWAFVDPKT--PIQNGVKFCVCVKEF-LPWVTLPLQIVYVNE 78 (161)
Q Consensus 39 ~~w~~V~~~~--p~~~G~~V~v~~g~~-~~~~~~pcRVv~V~d 78 (161)
.+|+.|..+. ++.+|+.|.+.+... ..-+..|++||++.+
T Consensus 60 ~~G~~I~~~~~~~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~ 102 (149)
T 1ywu_A 60 LHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD 102 (149)
T ss_dssp SSEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEEEET
T ss_pred cccCEEEcCCcCCCCCCCEEEEEEEcCCCCeEEEEEEEEEEcC
Confidence 5688887544 679999999987632 124789999999985
No 4
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=66.55 E-value=20 Score=26.50 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=29.6
Q ss_pred cceeEEcCCC--CCcCCcEEEEeeecc-cceeeeceEEEEEee
Q 031311 39 LNWAFVDPKT--PIQNGVKFCVCVKEF-LPWVTLPLQIVYVNE 78 (161)
Q Consensus 39 ~~w~~V~~~~--p~~~G~~V~v~~g~~-~~~~~~pcRVv~V~d 78 (161)
.+|+.|..+. ++.+|+.|.+.+... ..-+..|++||++.+
T Consensus 58 l~G~~I~~~~~~~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~ 100 (145)
T 2l74_A 58 LHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD 100 (145)
T ss_dssp TTEEEEECCTTCCCCTTSCEEEEEECSSSCEEEEEEEEEEEET
T ss_pred cCCCEEEcCCccCCCCCCEEEEEEEcCCCCeEEEEEEEEEEcC
Confidence 5688887554 679999998887632 124789999999975
No 5
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=65.19 E-value=27 Score=23.18 Aligned_cols=69 Identities=9% Similarity=0.004 Sum_probs=37.7
Q ss_pred eeEEeeccCCCCccceeEEEEEEEeCCCeEEEEEEE-eecCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 031311 88 SFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVS-FSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 159 (161)
Q Consensus 88 r~GFaYGTLpGH~e~GEE~F~Ve~~~dg~V~~~I~A-FSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~~~v~ 159 (161)
++.|.. ..|-...-+-.+.++-.++| ..++... |.-+..++..+..|++...-+....+.++++++.+.
T Consensus 74 ~i~~~~--~~g~~~~~~~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e 143 (147)
T 2d4r_A 74 RNRFFS--PEGDFDRYEGTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVL 143 (147)
T ss_dssp EEEEEE--EEESCSEEEEEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEe--ccCChhheEEEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555543 33432222556666655666 4443332 333334566667776655545566778888877664
No 6
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=55.87 E-value=53 Score=23.46 Aligned_cols=85 Identities=11% Similarity=0.032 Sum_probs=37.3
Q ss_pred ceeeeceEEEEEeecccccCCcceeEEeeccCCC--CccceeEEEEEEEe-CCCeEEEEEE-EeecCChhhHhhhhhhHH
Q 031311 65 PWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQG--HLLAGEERFSIELD-DNNQVWYEIV-SFSKPADFLSFIGYPYVQ 140 (161)
Q Consensus 65 ~~~~~pcRVv~V~de~~~~~~~~r~GFaYGTLpG--H~e~GEE~F~Ve~~-~dg~V~~~I~-AFSRPa~~l~rlg~P~~r 140 (161)
.....-++|+.+.. + +++.|.+ ..| -...|.=+| +-. +++...++.. .|.-|+.++.++..|+..
T Consensus 58 ~~~~~~~~v~e~~p-~------~~i~~~~--~~g~~~~~~g~~~F--~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~~ 126 (155)
T 3ggn_A 58 GTVSWEAELTADEP-G------KRIAWRS--LPGARIENSGEVLF--RPAPGARGTEVVVRLTYRPPGGSAGAVIARMFN 126 (155)
T ss_dssp CEEEEEEEEEEEET-T------TEEEEEE--CTTCSSCEEEEEEE--EECSSSSCEEEEEEEEEC---------------
T ss_pred ceEEEEEEEEEecC-C------CEEEEEE--CCCCCcceEEEEEE--EECCCCCceEEEEEEEEECCCcHHHHHHHHHhh
Confidence 33445566665433 1 2666655 334 234555555 333 2333444443 355566678888888877
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 031311 141 LRQKYFAHQSVNAVKKHLTA 160 (161)
Q Consensus 141 ~~Qr~f~rry~~am~~~v~~ 160 (161)
....++.+.-++++++.+..
T Consensus 127 ~~~~~~v~~~l~r~k~~~e~ 146 (155)
T 3ggn_A 127 QEPSQQLRDDLMRFKREQEL 146 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 66777888888888877643
No 7
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A
Probab=52.09 E-value=67 Score=23.52 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=64.6
Q ss_pred hcccCCCchHHHHHHHhcCccc---ccceeEEcCCCCCcCCcEEEEeeecccceeeeceEEEEEeecccccCCcceeEEe
Q 031311 16 SKKIKGSQKMVSYSIMRVFWHF---GLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFG 92 (161)
Q Consensus 16 ~~~~~~~~~~~A~~aL~~W~~~---~~~w~~V~~~~p~~~G~~V~v~~g~~~~~~~~pcRVv~V~de~~~~~~~~r~GFa 92 (161)
|..| +++-+..=+.|.+.... ...=..+..+.|.++|+++.+... .+. ...++|+.+.. ++++.|
T Consensus 23 si~I-~Appe~VW~~ltD~~~~~~W~p~v~~~~~~G~~~~G~~~~~~~~-~~~--~~~~~v~~~~p-------~~~~~~- 90 (155)
T 3ijt_A 23 ELAV-NTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKME-DMP--ELAFTLVEVRE-------NQCFSD- 90 (155)
T ss_dssp EEEE-SSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEET-TSC--CEEEEECCCBT-------TTEEEE-
T ss_pred EEEE-cCCHHHHHHHHhCcccccccchhhEeeeccCCCCCCCEEEEEeC-CCC--cEEEEEEEEeC-------CcEEEE-
Confidence 4556 77777777766543321 111113445678899999887765 222 23445553332 236665
Q ss_pred eccCCCCccceeEEEEEEEeCCCeEEEEE-EEeecCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 031311 93 SGTLQGHLLAGEERFSIELDDNNQVWYEI-VSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 159 (161)
Q Consensus 93 YGTLpGH~e~GEE~F~Ve~~~dg~V~~~I-~AFSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~~~v~ 159 (161)
.+.+|+=..+ -.+.|+-.++|...++- ..|+-|......++ +.+.++. ...+.+++|++.+.
T Consensus 91 ~~~~p~~~~~--~~h~l~p~~~ggTrvt~~~~~~G~~~~~~~~~--~~~~i~~-~~~~~l~~LK~~aE 153 (155)
T 3ijt_A 91 LTATPFGNVL--FEHEILENPDGTISLRHSVSLTDSDTTEEALA--FLKQIFA-DVPESVGKLKQILE 153 (155)
T ss_dssp EEEETTEEEE--EEEEEEECTTSCEEEEEEEEESCCSCCHHHHH--HHHHHHT-THHHHHHHHHHHHT
T ss_pred EEecCCeEEE--EEEEEEEcCCCcEEEEEEEEEECCCcchhHHH--HHHHHHH-HHHHHHHHHHHHhh
Confidence 3456653333 23455544456555544 47777764222222 3332222 22445666666543
No 8
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=41.71 E-value=26 Score=25.68 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=41.8
Q ss_pred cccCCCchHHHHHHHhcCcc-cc--cceeEEcCCCCC-cCCcEEEEeeecc--cce--eeeceEEEEEeec
Q 031311 17 KKIKGSQKMVSYSIMRVFWH-FG--LNWAFVDPKTPI-QNGVKFCVCVKEF--LPW--VTLPLQIVYVNES 79 (161)
Q Consensus 17 ~~~~~~~~~~A~~aL~~W~~-~~--~~w~~V~~~~p~-~~G~~V~v~~g~~--~~~--~~~pcRVv~V~de 79 (161)
.-|+..++|+|+.++.+.=. .+ .-|++|.|+.|+ .-+..+-+..|-+ -.| ...|=||++-++.
T Consensus 25 ~~it~~qiEaaR~ai~r~l~~k~~~~~wirv~P~~pvt~k~~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g 95 (118)
T 2ftc_I 25 GYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGG 95 (118)
T ss_pred CccCHHHHHHHHHHHHheeeccCCeEEEEEECCCcccCcCchhcccccCCCCccEEEEEECCCCEEEEEec
Confidence 35778899999999988862 22 249999999997 6666666655322 233 2355566665543
No 9
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=34.50 E-value=1e+02 Score=20.63 Aligned_cols=98 Identities=9% Similarity=-0.082 Sum_probs=54.2
Q ss_pred hhcccCCCchHHHHHHHhcCccccccee-EEcCCCCCcCCcEEEEeeecccceeeeceEEEEEeecccccCCcceeEEee
Q 031311 15 ASKKIKGSQKMVSYSIMRVFWHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGS 93 (161)
Q Consensus 15 ~~~~~~~~~~~~A~~aL~~W~~~~~~w~-~V~~~~p~~~G~~V~v~~g~~~~~~~~pcRVv~V~de~~~~~~~~r~GFaY 93 (161)
.+..| +++-+..-++|.+=.... .|. ....+.++++|..+.......+.-+...++|+.+.. + ++..|.+
T Consensus 9 ~~~~i-~ap~e~Vw~~ltd~~~~~-~W~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~------~~l~~~~ 79 (146)
T 2leq_A 9 VKTVI-NAPIEKVWEALVNPEIIK-EYMFGTTVVSDWKEGSQIVWKGEWKGKAYEDKGTILQFNE-R------SILQYSH 79 (146)
T ss_dssp EEEEE-CSCHHHHHHHHSCTTHHH-HHSSSCEEECCCSTTCEEEEEEEETTEEEEEEEEEEEEET-T------TEEEEEC
T ss_pred EEEEE-CCCHHHHHHHHcCHHHhc-eeEcCCcceeccCCCCEEEEEecCCCceecccEEEEEEcC-C------CEEEEEE
Confidence 56677 778888888876643222 121 111233458899887765432322345667666554 2 3788877
Q ss_pred cc-CCCC----ccceeEEEEEEEeCCCeEEEEEE
Q 031311 94 GT-LQGH----LLAGEERFSIELDDNNQVWYEIV 122 (161)
Q Consensus 94 GT-LpGH----~e~GEE~F~Ve~~~dg~V~~~I~ 122 (161)
.. .+|. ...+.-.|.++-.++| ..+++.
T Consensus 80 ~~~~~g~~~~~~~~~~~~~~l~~~~~g-T~l~~~ 112 (146)
T 2leq_A 80 FSPLTGKPDLPENYHVVTITLTALKKG-VEVELT 112 (146)
T ss_dssp BCGGGCCCSCGGGSCEEEEEEEECSSC-EEEEEE
T ss_pred ccCccCCCCCCCCceEEEEEEEEcCCC-eEEEEE
Confidence 43 2342 1246677877765544 445443
No 10
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI protein structure initiative, northeast structural genomics consortium, NESG; HET: C2E; 1.92A {Vibrio cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Probab=34.10 E-value=85 Score=24.41 Aligned_cols=41 Identities=15% Similarity=-0.004 Sum_probs=28.4
Q ss_pred cceeEEcCC---CCCcCCcEEEEeeeccc----ceeeeceEEEEEeec
Q 031311 39 LNWAFVDPK---TPIQNGVKFCVCVKEFL----PWVTLPLQIVYVNES 79 (161)
Q Consensus 39 ~~w~~V~~~---~p~~~G~~V~v~~g~~~----~~~~~pcRVv~V~de 79 (161)
.+|+.+..+ .+..+|+.+.+.+.... ..+..+++|+++..+
T Consensus 164 ~gG~~i~~~~~~~~~~~g~~v~l~~~l~~~~~~~~~~~~~~V~~~~~~ 211 (251)
T 2rde_A 164 RSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRS 211 (251)
T ss_dssp SSEEEEEECTTSCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEEC
T ss_pred ccCcEEEecCCCCCcCCCCEEEEEEEcCCCCcccceeEEEEEEEeEec
Confidence 568877543 25799999888776421 124789999998754
No 11
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=31.86 E-value=1.2e+02 Score=20.72 Aligned_cols=131 Identities=10% Similarity=0.021 Sum_probs=66.0
Q ss_pred hcccCCCchHHHHHHHhcCcccc--ccee-EEcCCCCCcCCc--EEEEeeecccceeeeceEEEEEeecccccCCcceeE
Q 031311 16 SKKIKGSQKMVSYSIMRVFWHFG--LNWA-FVDPKTPIQNGV--KFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFG 90 (161)
Q Consensus 16 ~~~~~~~~~~~A~~aL~~W~~~~--~~w~-~V~~~~p~~~G~--~V~v~~g~~~~~~~~pcRVv~V~de~~~~~~~~r~G 90 (161)
+..| +++-+..-+++.+-.... ..|. .++ . .|. .+.+..+.++.-....+++.+...++. .++-
T Consensus 18 ~~~i-~ap~e~Vw~~l~D~~~~~~w~p~~~~~~----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~i~ 86 (157)
T 2ns9_A 18 SFEV-SKTPEEVFEFLTDPKRFSRAFPGFKSVE----V-EDGSFTIELRLSLGPLRGDARVRASFEDLEKP-----SKAT 86 (157)
T ss_dssp EEEE-SSCHHHHHHHHTCHHHHGGGSTTEEEEE----E-ETTEEEEEEEEESSSSEEEEEEEEEEEEEETT-----TEEE
T ss_pred EEEE-cCCHHHHHHHHcCHHHHHhhCCCceEEE----E-CCCEEEEEEEEEEcceeEEEEEEEEEEecCCC-----cEEE
Confidence 4455 667777776665443221 1122 222 1 232 333333322222344566555443332 2665
Q ss_pred EeeccCCCC--ccceeEEEEEEEeCCCeEEEEEEE-eecCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 031311 91 FGSGTLQGH--LLAGEERFSIELDDNNQVWYEIVS-FSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTA 160 (161)
Q Consensus 91 FaYGTLpGH--~e~GEE~F~Ve~~~dg~V~~~I~A-FSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~~~v~~ 160 (161)
|... ..|. +..++-.+.++-.+ |...++... |. ....+..++.++.....++.....++++++.+.+
T Consensus 87 ~~~~-~~~~~~~~~~~~~~~l~~~~-~gT~v~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~ 156 (157)
T 2ns9_A 87 VKGS-GRGAGSTLDFTLRFAVEPSG-GGSRVSWVFEGN-VGGLAASMGGRVLDSLARRMINDVISGVKRELGE 156 (157)
T ss_dssp EEEE-EECSSEEEEEEEEEEEEEET-TEEEEEEEEEEE-EEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEE-ecCCCccEEEEEEEEEEeCC-CcEEEEEEEEEE-ECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5421 1121 33456667776544 434444332 22 2334566777877777778888888888887754
No 12
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=28.46 E-value=36 Score=26.41 Aligned_cols=61 Identities=8% Similarity=-0.145 Sum_probs=39.0
Q ss_pred cccCCCchHHHHHHHhcCccccc------ceeEEcCCCCC--cCCcEEEEeee--cccce--eeeceEEEEEeec
Q 031311 17 KKIKGSQKMVSYSIMRVFWHFGL------NWAFVDPKTPI--QNGVKFCVCVK--EFLPW--VTLPLQIVYVNES 79 (161)
Q Consensus 17 ~~~~~~~~~~A~~aL~~W~~~~~------~w~~V~~~~p~--~~G~~V~v~~g--~~~~~--~~~pcRVv~V~de 79 (161)
..|+..+.|+|+.|+.+.-.... -|++|+|+.|+ .+ .+-++.+ ..-.| ...|=+|++-++.
T Consensus 54 ~~Its~qIEAaRia~nR~lkr~~Gk~~fklwIRifP~~~it~kp--etrMg~gkG~p~~wvArVk~G~ilfei~g 126 (157)
T 1ffk_F 54 VQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPFHVIREQD--GDGMRAPFGKSVGTAARSHGANHDFIAWV 126 (157)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhcCCcccEEEEEECCCeeeEecc--cccccCCCCCccEEEEEEcCCCEEEEEec
Confidence 45777888999999998865542 49999999997 44 3333332 22233 3455566655543
No 13
>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}
Probab=28.16 E-value=1.8e+02 Score=21.29 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=43.1
Q ss_pred cCCcEEEEeeecccceeeeceEEEEEeecccccCCcceeEEeeccCCCCccceeEEEEEEEeCC---CeEEEEEEEeecC
Q 031311 51 QNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDN---NQVWYEIVSFSKP 127 (161)
Q Consensus 51 ~~G~~V~v~~g~~~~~~~~pcRVv~V~de~~~~~~~~r~GFaYGTLpGH~e~GEE~F~Ve~~~d---g~V~~~I~AFSRP 127 (161)
.+|.......+ .. -..||+|+.+... .++.|....-++. .-.|.++...+ +.+.++|+-|+.+
T Consensus 40 ~~g~~~~F~w~--~~-~~~~~~v~~~~~~-------~~i~FrW~~~~~~----~~~~e~~l~~~~~t~~~~L~vtdFa~~ 105 (136)
T 2lio_A 40 SDDKTVTFCWG--KT-EQRQAGIVAIRAY-------SFIRFHWLDDENE----RDYFEIKMSYNELTGDYVLEITDFSEA 105 (136)
T ss_dssp EETTEEEEESS--SS-SEEEEEEEEEETT-------TEEEEEESSSSSS----SCEEEEEEEECTTTSCEEEEEEEEECH
T ss_pred ccCceEEEEeC--CC-CcEeEEEEEEcCC-------CEEEEEccCCCCC----ceEEEEEEEecCCCCcEEEEEecCCCc
Confidence 46776666554 22 4579999998753 3888888764321 12666666532 5899999999987
Q ss_pred C
Q 031311 128 A 128 (161)
Q Consensus 128 a 128 (161)
.
T Consensus 106 ~ 106 (136)
T 2lio_A 106 D 106 (136)
T ss_dssp H
T ss_pred c
Confidence 5
No 14
>3tw5_A Transglutaminase elicitor; cysteine protease, convergent evolution, innate immunity, PA associated molecular pattern (PAMP); HET: CXS; 2.95A {Phytophthora sojae}
Probab=24.44 E-value=1.3e+02 Score=26.46 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=36.4
Q ss_pred eeeeceEEEEEeecccccCCcceeEEeeccCCCCcc-----------ceeEEEEEEEeCCCeEEE
Q 031311 66 WVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLL-----------AGEERFSIELDDNNQVWY 119 (161)
Q Consensus 66 ~~~~pcRVv~V~de~~~~~~~~r~GFaYGTLpGH~e-----------~GEE~F~Ve~~~dg~V~~ 119 (161)
|-..-++|+||.. ++.+...|.+.|.+ +-.=.+.+|+|++|.|.-
T Consensus 263 fN~~a~~ivyv~~---------~~swivEt~~d~~lv~sg~~~~~t~~~~Y~YlLELD~~g~IIG 318 (367)
T 3tw5_A 263 WNAAAKSLVYVKS---------RLSWIYETYTDGGLVSSGQIDKFTTGQYYYYLLELDDAGEIIG 318 (367)
T ss_dssp SCTTCCEEEEEEE---------EEEEECCCCCCSCHHHHTGGGGGEEEEEEEEEEEECTTCBEEE
T ss_pred CChhhceEEEEEE---------EEEEEEEccCCCCcccccccccccccceeEEEEEecCCCCEec
Confidence 4556699999998 99999999998854 335678899999998864
No 15
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=22.50 E-value=26 Score=26.32 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=42.5
Q ss_pred cccCCCchHHHHHHHhcCcc-cccceeEEcCCCCC-cCCcEEEEeeec--ccce--eeeceEEEEEeec
Q 031311 17 KKIKGSQKMVSYSIMRVFWH-FGLNWAFVDPKTPI-QNGVKFCVCVKE--FLPW--VTLPLQIVYVNES 79 (161)
Q Consensus 17 ~~~~~~~~~~A~~aL~~W~~-~~~~w~~V~~~~p~-~~G~~V~v~~g~--~~~~--~~~pcRVv~V~de 79 (161)
.-|+..++|+|+.|+.+.=- ...-|++|.|+.|+ .-+..+-+..|- .-.| ...|=||++-++.
T Consensus 40 ~~it~~qiEaaR~ai~R~lk~~~k~wirv~P~~pvt~k~~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g 108 (135)
T 3bbo_O 40 AWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISG 108 (135)
T ss_dssp CCCCHHHHHHHHHHHHHTTCSSSCCCCCCCCCSCCCCCCSSCCSSCCCSCSSCCCCCCCTTCEEEEECS
T ss_pred CccCHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccEeccccccccccCCCceEEEEEECCCCEEEEEec
Confidence 35777899999999988742 23459999999997 666655555542 2234 3456677766654
Done!