BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031314
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BYK|A Chain A, Trehalose Repressor From Escherichia Coli
 pdb|1BYK|B Chain B, Trehalose Repressor From Escherichia Coli
          Length = 255

 Score = 29.6 bits (65), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 2   VYIGVCSLVGSLSVMSVKAL-GIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNK 60
            Y+  C    +  +  V AL G+A+K  +E + ++I P+T           +    YL +
Sbjct: 137 AYLAFCK---AHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQE 193

Query: 61  A-LDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICG 107
             +DT   A V     + F    I+     + +  RQ   Q++ ++ G
Sbjct: 194 QRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQAACQLIAQVTG 241


>pdb|3OV6|A Chain A, Cd1c In Complex With Mpm
           (Mannosyl-Beta1-Phosphomycoketide)
          Length = 397

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 93  WDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENAYD 146
           W R    Q  T++   +    GT+ L  T D  DG +A +  R+ KHS     D
Sbjct: 338 WMRGEQEQQGTQLGDILPNAQGTWYLRATLDVADGEAAGLSCRV-KHSSLEGQD 390


>pdb|2H26|A Chain A, Human Cd1b In Complex With Endogenous Phosphatidylcholine
           And Spacer
          Length = 286

 Score = 26.2 bits (56), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 93  WDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENAYD 146
           W R    Q  T++   +   + T+ L  T D  DG +A +  R+ KHS     D
Sbjct: 220 WMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRV-KHSSLEGQD 272


>pdb|1GZP|A Chain A, Cd1b In Complex With Gm2 Ganglioside
 pdb|1GZQ|A Chain A, Cd1b In Complex With Phophatidylinositol
 pdb|1UQS|A Chain A, The Crystal Structure Of Human Cd1b With A Bound Bacterial
           Glycolipid
          Length = 300

 Score = 26.2 bits (56), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 93  WDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENAYD 146
           W R    Q  T++   +   + T+ L  T D  DG +A +  R+ KHS     D
Sbjct: 223 WMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRV-KHSSLEGQD 275


>pdb|3T8X|A Chain A, Crystal Structure Of Human Cd1b In Complex With Synthetic
           Antigenic Diacylsulfoglycolipid Sgl12 And Endogenous
           Spacer
 pdb|3T8X|C Chain C, Crystal Structure Of Human Cd1b In Complex With Synthetic
           Antigenic Diacylsulfoglycolipid Sgl12 And Endogenous
           Spacer
          Length = 301

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 93  WDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENAYD 146
           W R    Q  T++   +   + T+ L  T D  DG +A +  R+ KHS     D
Sbjct: 220 WMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRV-KHSSLEGQD 272


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,263,557
Number of Sequences: 62578
Number of extensions: 144241
Number of successful extensions: 255
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 7
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)