Query 031314
Match_columns 161
No_of_seqs 105 out of 449
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 12:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 9.1E-42 2E-46 293.1 8.5 135 1-135 187-321 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 2.1E-38 4.5E-43 270.8 10.1 128 1-128 173-300 (300)
3 PRK02971 4-amino-4-deoxy-L-ara 95.4 0.026 5.7E-07 43.1 4.5 73 46-124 53-126 (129)
4 PRK09541 emrE multidrug efflux 94.8 0.053 1.2E-06 40.4 4.5 81 33-122 25-105 (110)
5 PRK11431 multidrug efflux syst 94.6 0.063 1.4E-06 39.8 4.4 80 33-121 24-103 (105)
6 PRK10452 multidrug efflux syst 94.6 0.075 1.6E-06 40.3 4.9 72 46-123 35-106 (120)
7 PRK15051 4-amino-4-deoxy-L-ara 94.6 0.088 1.9E-06 38.9 5.2 81 34-121 30-110 (111)
8 PRK10650 multidrug efflux syst 93.9 0.086 1.9E-06 39.4 3.9 78 33-119 30-107 (109)
9 COG2510 Predicted membrane pro 92.2 0.77 1.7E-05 35.9 7.0 82 29-121 52-140 (140)
10 PF06800 Sugar_transport: Suga 91.7 1.2 2.7E-05 38.2 8.4 93 31-126 34-128 (269)
11 TIGR03340 phn_DUF6 phosphonate 90.8 0.44 9.6E-06 39.6 4.8 74 41-121 63-136 (281)
12 COG4975 GlcU Putative glucose 90.5 0.95 2.1E-05 39.1 6.5 70 51-124 70-139 (288)
13 TIGR00776 RhaT RhaT L-rhamnose 90.3 1.1 2.3E-05 37.9 6.7 73 50-125 69-141 (290)
14 PF00893 Multi_Drug_Res: Small 89.5 0.49 1.1E-05 33.7 3.5 67 33-104 24-90 (93)
15 PF00892 EamA: EamA-like trans 87.3 0.35 7.5E-06 33.9 1.5 60 52-118 65-124 (126)
16 COG2076 EmrE Membrane transpor 86.9 0.92 2E-05 33.9 3.6 79 34-121 26-104 (106)
17 TIGR03340 phn_DUF6 phosphonate 86.7 1.6 3.5E-05 36.2 5.5 66 45-118 216-281 (281)
18 PF13536 EmrE: Multidrug resis 83.8 1.3 2.9E-05 32.0 3.2 65 53-125 47-111 (113)
19 PF10639 UPF0546: Uncharacteri 82.3 5.2 0.00011 30.2 5.9 53 60-118 60-112 (113)
20 TIGR00950 2A78 Carboxylate/Ami 80.7 8 0.00017 31.0 7.0 71 37-115 187-259 (260)
21 PLN00411 nodulin MtN21 family 76.2 4.9 0.00011 35.4 4.8 62 57-125 272-333 (358)
22 TIGR00776 RhaT RhaT L-rhamnose 73.5 5.3 0.00011 33.8 4.2 68 52-122 222-290 (290)
23 PF06027 DUF914: Eukaryotic pr 71.2 27 0.00059 30.8 8.2 61 58-125 250-310 (334)
24 PRK10532 threonine and homoser 67.7 26 0.00057 29.2 7.2 80 36-122 203-283 (293)
25 PF15048 OSTbeta: Organic solu 62.9 2.4 5.1E-05 32.7 -0.1 32 89-121 26-57 (125)
26 PF08507 COPI_assoc: COPI asso 58.2 17 0.00037 27.5 4.0 20 100-119 85-104 (136)
27 PRK13499 rhamnose-proton sympo 57.3 18 0.00039 32.1 4.5 72 48-120 81-153 (345)
28 PRK11453 O-acetylserine/cystei 55.6 17 0.00037 30.4 3.9 67 48-121 222-288 (299)
29 PF07457 DUF1516: Protein of u 54.4 18 0.00039 27.0 3.4 82 36-125 5-90 (110)
30 PF11297 DUF3098: Protein of u 52.1 16 0.00035 25.4 2.6 36 97-132 4-40 (69)
31 PRK13499 rhamnose-proton sympo 51.9 7.5 0.00016 34.5 1.2 41 80-121 302-342 (345)
32 PF06800 Sugar_transport: Suga 50.4 15 0.00032 31.7 2.7 102 12-117 164-268 (269)
33 COG0697 RhaT Permeases of the 49.4 37 0.00079 26.9 4.8 67 54-126 83-149 (292)
34 PRK11272 putative DMT superfam 49.3 23 0.00051 29.5 3.8 66 51-123 223-288 (292)
35 PRK15430 putative chlorampheni 46.1 39 0.00084 28.3 4.6 45 48-94 221-265 (296)
36 COG0697 RhaT Permeases of the 45.1 87 0.0019 24.7 6.3 61 54-121 228-288 (292)
37 TIGR00817 tpt Tpt phosphate/ph 43.7 27 0.00058 29.1 3.3 59 60-125 240-298 (302)
38 PF11970 Git3_C: G protein-cou 42.5 17 0.00037 25.4 1.6 49 67-115 13-61 (76)
39 PRK11689 aromatic amino acid e 41.0 41 0.00089 28.1 4.0 64 49-120 224-287 (295)
40 PF04276 DUF443: Protein of un 40.8 1.5E+02 0.0033 23.9 7.2 61 34-94 86-166 (199)
41 PF07857 DUF1632: CEO family ( 40.8 58 0.0013 27.7 4.8 64 61-125 63-139 (254)
42 KOG2922 Uncharacterized conser 38.6 49 0.0011 29.5 4.2 105 9-125 32-141 (335)
43 KOG1688 Golgi proteins involve 38.4 1E+02 0.0022 25.3 5.6 47 99-160 63-109 (188)
44 PF08507 COPI_assoc: COPI asso 38.4 37 0.00079 25.6 3.0 20 99-118 91-110 (136)
45 PRK13673 hypothetical protein; 37.1 45 0.00097 25.4 3.3 84 36-125 4-88 (118)
46 PF08449 UAA: UAA transporter 35.8 1.1E+02 0.0024 25.6 5.9 79 35-120 219-297 (303)
47 PF15383 TMEM237: Transmembran 34.9 38 0.00082 28.9 2.8 51 35-85 137-197 (253)
48 PLN02392 probable steroid redu 33.8 1E+02 0.0022 26.5 5.2 16 48-63 80-95 (260)
49 PF02038 ATP1G1_PLM_MAT8: ATP1 32.4 13 0.00029 24.3 -0.2 24 98-121 13-36 (50)
50 TIGR00950 2A78 Carboxylate/Ami 31.7 1.3E+02 0.0029 23.8 5.5 60 55-121 61-120 (260)
51 PF05814 DUF843: Baculovirus p 30.5 98 0.0021 22.3 3.9 29 31-59 19-47 (83)
52 PF06379 RhaT: L-rhamnose-prot 30.2 1E+02 0.0022 27.6 4.8 78 41-119 259-339 (344)
53 KOG1580 UDP-galactose transpor 29.7 1.6E+02 0.0035 25.7 5.8 72 36-117 236-310 (337)
54 PRK15430 putative chlorampheni 29.2 1.4E+02 0.003 24.9 5.3 68 38-108 70-137 (296)
55 PF14018 DUF4234: Domain of un 25.6 90 0.0019 20.9 3.0 26 41-66 5-30 (75)
56 COG4975 GlcU Putative glucose 24.1 48 0.001 28.8 1.6 109 10-122 176-287 (288)
57 PF05653 Mg_trans_NIPA: Magnes 24.0 93 0.002 26.8 3.4 55 60-121 69-123 (300)
58 COG3926 zliS Lysozyme family p 23.6 1E+02 0.0023 26.3 3.5 29 36-64 222-250 (252)
59 PF04923 Ninjurin: Ninjurin ; 22.6 1.7E+02 0.0037 21.6 4.1 31 24-56 27-57 (104)
60 PF06422 PDR_CDR: CDR ABC tran 22.0 65 0.0014 23.4 1.8 28 93-120 43-70 (103)
61 PRK11085 magnesium/nickel/coba 21.9 1.9E+02 0.004 25.3 4.9 35 25-60 271-312 (316)
62 PF04184 ST7: ST7 protein; In 21.8 52 0.0011 31.1 1.5 54 40-94 6-68 (539)
63 PF11368 DUF3169: Protein of u 21.6 42 0.00092 27.8 0.8 30 35-64 46-75 (248)
64 PF12273 RCR: Chitin synthesis 21.2 39 0.00085 25.3 0.5 32 98-130 2-33 (130)
65 TIGR00383 corA magnesium Mg(2+ 20.8 2E+02 0.0044 24.1 4.8 22 39-60 293-314 (318)
66 KOG3071 Fatty acyl-CoA elongas 20.7 62 0.0014 28.0 1.7 21 51-71 111-131 (274)
67 PF01235 Na_Ala_symp: Sodium:a 20.1 89 0.0019 28.5 2.6 72 43-119 315-389 (416)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.1e-42 Score=293.05 Aligned_cols=135 Identities=65% Similarity=1.084 Sum_probs=131.9
Q ss_pred CEEEEEeccccCeeeehHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHH
Q 031314 1 MVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTS 80 (161)
Q Consensus 1 ~vY~~ic~llGs~tVl~~K~~~~~l~~~~~g~nqf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~ 80 (161)
+||+++||++||+||+++|++|+++|++++|+||+.||+||+++++++.|+++|++|||||||+|||++|.|+|||+||+
T Consensus 187 lvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTt 266 (335)
T KOG2922|consen 187 LVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTT 266 (335)
T ss_pred eehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCCCCCCcchhcc
Q 031314 81 LTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMR 135 (161)
Q Consensus 81 ~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~~~~~~~~~~~ 135 (161)
++|++|+|+||||++++..|+.+++|||++++.|+++|+++||.+.+..+..+++
T Consensus 267 l~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~~s~~~~~ 321 (335)
T KOG2922|consen 267 LVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISLASYNSMS 321 (335)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecccccccccccccc
Confidence 9999999999999999999999999999999999999999999999888877665
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=2.1e-38 Score=270.79 Aligned_cols=128 Identities=44% Similarity=0.840 Sum_probs=125.0
Q ss_pred CEEEEEeccccCeeeehHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHH
Q 031314 1 MVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTS 80 (161)
Q Consensus 1 ~vY~~ic~llGs~tVl~~K~~~~~l~~~~~g~nqf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~ 80 (161)
++|+++||++||+||+++|+++++++++++|+|||.||.+|++++++++|+++|++||||||++||+++|+|+|||+||+
T Consensus 173 ~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~ 252 (300)
T PF05653_consen 173 LVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTL 252 (300)
T ss_pred EEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCCCCC
Q 031314 81 LTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGS 128 (161)
Q Consensus 81 ~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~~~~ 128 (161)
+++++|+|+||||+++++++++++.+|++++++||++|+.+||.++++
T Consensus 253 ~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~~~ 300 (300)
T PF05653_consen 253 SSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEISQ 300 (300)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhccC
Confidence 999999999999999999999999999999999999999999998753
No 3
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=95.44 E-value=0.026 Score=43.09 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhce-eeecccCCCCchhHHHHHHHHHHHhhheeeecccCCC
Q 031314 46 IVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASV-IMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDA 124 (161)
Q Consensus 46 ~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~-I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~ 124 (161)
.-+++-..-....+.+|+.-|.+...|+....+....+.+-. ++|+|-- ++ .-.+|..+++.||+++++.+++
T Consensus 53 lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~l--s~----~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 53 LGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETF--SL----KKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CH----HHHHHHHHHHHHHHHhccCCCC
Confidence 344555666778899999999999999988887555555554 4899833 43 4467888999999999865543
No 4
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=94.82 E-value=0.053 Score=40.43 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHh
Q 031314 33 NQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTIL 112 (161)
Q Consensus 33 nqf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~ 112 (161)
+.|++|..++. .+++...-...|-+|++..+-++.+|+-=..=+..+.+-|.++|+|=- ++.+ ..|..+++
T Consensus 25 ~gf~~~~~~i~---~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~--~~~~----~~gi~lIi 95 (110)
T PRK09541 25 EGFTRLWPSVG---TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLIC 95 (110)
T ss_pred cCCCchhHHHH---HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHH
Confidence 44777776554 355666677889999999887776666554445667778899999944 4433 46788899
Q ss_pred hheeeecccC
Q 031314 113 SGTFLLHKTK 122 (161)
Q Consensus 113 ~GV~lLs~~k 122 (161)
.||.++....
T Consensus 96 ~GVi~l~l~~ 105 (110)
T PRK09541 96 AGVLVINLLS 105 (110)
T ss_pred HHHHHHhcCC
Confidence 9999986544
No 5
>PRK11431 multidrug efflux system protein; Provisional
Probab=94.62 E-value=0.063 Score=39.81 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=54.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHh
Q 031314 33 NQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTIL 112 (161)
Q Consensus 33 nqf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~ 112 (161)
+.|+++..+++. +++...=.++|.+|+|.-+..+.+++.=..=+..+.+.|.++|+|=- ++.+ .+|+.+++
T Consensus 24 ~gf~~~~~~~~~---i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~--~~~~----~~gi~lIi 94 (105)
T PRK11431 24 HGFSRLTPSIIT---VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESA--SPAR----LLSLALIV 94 (105)
T ss_pred hCCccHHHHHHH---HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHH
Confidence 567888776654 45555667899999998775554444433334555667888999944 4444 46788899
Q ss_pred hheeeeccc
Q 031314 113 SGTFLLHKT 121 (161)
Q Consensus 113 ~GV~lLs~~ 121 (161)
.||..|...
T Consensus 95 ~GVv~l~l~ 103 (105)
T PRK11431 95 AGIIGLKLS 103 (105)
T ss_pred HHHHhhhcc
Confidence 999988644
No 6
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=94.58 E-value=0.075 Score=40.34 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCC
Q 031314 46 IVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKD 123 (161)
Q Consensus 46 ~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~ 123 (161)
..+++...=.+.|.+|++.-+-++.+|+.=..=+..+.+.|.++|+|=- ++ .-.+|..+++.||.++....+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~--s~----~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESL--SL----MKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC--CH----HHHHHHHHHHHHHHHhhcCCC
Confidence 3455666668899999999988877777554555666778888999943 33 345788899999999876544
No 7
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=94.58 E-value=0.088 Score=38.94 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=57.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhh
Q 031314 34 QLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILS 113 (161)
Q Consensus 34 qf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~ 113 (161)
.+++|......+..+.+...-...+-++++.-|.+..+|+-+ .=...+.+.|..+|+| +.++.+ .+|..+++.
T Consensus 30 ~~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E--~ls~~~----~~Gi~lii~ 102 (111)
T PRK15051 30 GKRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHE--PVSPRH----WCGVAFIIG 102 (111)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHHH
Confidence 345554334444445566667788999999999999999998 5556667788888998 345555 457777888
Q ss_pred heeeeccc
Q 031314 114 GTFLLHKT 121 (161)
Q Consensus 114 GV~lLs~~ 121 (161)
||.+++++
T Consensus 103 Gv~~i~~~ 110 (111)
T PRK15051 103 GIVILGST 110 (111)
T ss_pred HHHHHhcc
Confidence 88887653
No 8
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=93.92 E-value=0.086 Score=39.39 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=54.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHh
Q 031314 33 NQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTIL 112 (161)
Q Consensus 33 nqf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~ 112 (161)
+.|++|...+.. +++...=.+.|.+|+|.-+-.+.+|+-=..=+..+.+.|.++|+|=- ++.+ .+|..+++
T Consensus 30 ~gf~~~~~~~~~---~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~--~~~~----~~gi~lIi 100 (109)
T PRK10650 30 DGFRRKIYGILS---LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRL--NRKG----WIGLVLLL 100 (109)
T ss_pred cCCcchHHHHHH---HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHH----HHHHHHHH
Confidence 557877764443 45555567899999998877666665555555677778889999944 4444 46777888
Q ss_pred hheeeec
Q 031314 113 SGTFLLH 119 (161)
Q Consensus 113 ~GV~lLs 119 (161)
.||..|.
T Consensus 101 ~GVi~lk 107 (109)
T PRK10650 101 AGMVMIK 107 (109)
T ss_pred HHHHHhc
Confidence 8888764
No 9
>COG2510 Predicted membrane protein [Function unknown]
Probab=92.16 E-value=0.77 Score=35.91 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=52.0
Q ss_pred hcCCcccc---hhHHHH--HHHHHHHHHHHHHHHHHHHhcccCceeecch--hhhhHHHhhhhhceeeecccCCCCchhH
Q 031314 29 FEGMNQLI---YPQTWI--FTMIVLVCVITQMNYLNKALDTFNTAVVSPI--YYVMFTSLTILASVIMFKDWDRQNPTQI 101 (161)
Q Consensus 29 ~~g~nqf~---~~~ty~--~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi--~yv~fT~~~Ii~g~I~f~e~~~~~~~~i 101 (161)
..|+-|-. .+-.|. .+-.+...+.-+.+| +||+.-+++.|+|+ .++.++ ++=|.++.+|= ++..+
T Consensus 52 ~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf--~ALk~G~as~VvPldk~svvl~---~lls~lfL~E~--ls~~~- 123 (140)
T COG2510 52 VTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYF--RALKKGKASRVVPLDKTSVVLA---VLLSILFLGER--LSLPT- 123 (140)
T ss_pred hcCceecccccCcceehhhhHHHHHHHHHHHHHH--HHHhcCCcceEEEcccccHHHH---HHHHHHHhcCC--CCHHH-
Confidence 34655543 344444 444444334444444 99999999999999 344433 33466777873 34443
Q ss_pred HHHHHHHHHHhhheeeeccc
Q 031314 102 VTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 102 ~~~~~G~lii~~GV~lLs~~ 121 (161)
.+|+.++.+|+.+++.+
T Consensus 124 ---~iG~~LI~~Gailvs~~ 140 (140)
T COG2510 124 ---WIGIVLIVIGAILVSLR 140 (140)
T ss_pred ---HHHHHHHHhCeeeEecC
Confidence 46889999999999753
No 10
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=91.65 E-value=1.2 Score=38.19 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCcccc-hhHHHHH-HHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHH
Q 031314 31 GMNQLI-YPQTWIF-TMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGF 108 (161)
Q Consensus 31 g~nqf~-~~~ty~~-l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~ 108 (161)
-++++. ++..|+. ++.=+.-++.|+.-. ++.+.---+.-.|+-=.+=-..+.+-|.++|+||+. ..+.+.=++++
T Consensus 34 ~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf-~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~--~~~~~~G~~Al 110 (269)
T PF06800_consen 34 RQPAFSMSGTSFIVAFLSGAFWAIGQIGQF-KSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTT--TTQKIIGFLAL 110 (269)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCC--cchHHHHHHHH
Confidence 344555 2344433 333344467777655 788888999999997666666666779999999995 44566666689
Q ss_pred HHHhhheeeecccCCCCC
Q 031314 109 VTILSGTFLLHKTKDAVD 126 (161)
Q Consensus 109 lii~~GV~lLs~~k~~~~ 126 (161)
++++.|+.+-+.++++++
T Consensus 111 ~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 111 VLIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHHhcccccccc
Confidence 999999987666554444
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=90.76 E-value=0.44 Score=39.59 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecc
Q 031314 41 WIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHK 120 (161)
Q Consensus 41 y~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~ 120 (161)
|...+........-...+++|++.-|++...|+.|.. -..+.+-|.++++|. .+..+++ |..+.+.|+.++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e~--~~~~~~~----g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGET--LSPLAWL----GILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcCC--CCHHHHH----HHHHHHHHHHHHhc
Confidence 4444444455666777899999999999999999987 777777788889985 4666655 56666688877765
Q ss_pred c
Q 031314 121 T 121 (161)
Q Consensus 121 ~ 121 (161)
.
T Consensus 136 ~ 136 (281)
T TIGR03340 136 S 136 (281)
T ss_pred c
Confidence 4
No 12
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.47 E-value=0.95 Score=39.06 Aligned_cols=70 Identities=29% Similarity=0.435 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCC
Q 031314 51 VITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDA 124 (161)
Q Consensus 51 ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~ 124 (161)
.+.|++-+ ||.++-..+.-.|+---+==..+-+-|.+.|+||+ ++.+++.=.....++++|+++=+ .+|+
T Consensus 70 s~GQ~~Qf-ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~--t~~~~IlG~iAliliviG~~lTs-~~~~ 139 (288)
T COG4975 70 SFGQANQF-KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWT--TPTQIILGFIALILIVIGIYLTS-KQDR 139 (288)
T ss_pred hhhhhhhh-hheeeeeeeccccccchhhHhhceeeeEEEEeccC--cchhHHHHHHHHHHHHHhheEee-eecc
Confidence 56788877 78999999999999777777777888999999999 55566666677789999998855 4444
No 13
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=90.25 E-value=1.1 Score=37.94 Aligned_cols=73 Identities=22% Similarity=0.376 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCC
Q 031314 50 CVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 125 (161)
Q Consensus 50 ~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~ 125 (161)
-++.|+-|. .|.+.=+.+.-.|++++.=-+.+.+.|.++|+|+. +..+.....+|+++++.|+++++..++.+
T Consensus 69 w~ig~~~~~-~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~--t~~~~~~~~~g~~l~l~G~~l~~~~~~~~ 141 (290)
T TIGR00776 69 WALGQINQF-KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWS--TSIQTLLGLLALILIIIGVYLTSRSKDKS 141 (290)
T ss_pred HHhhhhhHH-HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhHheEEeccccc
Confidence 345555554 67777777888888885555577788999999998 66677888999999999999998776443
No 14
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=89.47 E-value=0.49 Score=33.74 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=32.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHH
Q 031314 33 NQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTE 104 (161)
Q Consensus 33 nqf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~ 104 (161)
+.++++..++. .+.+-..-..++.+|++.-|.++.+|+.-..=+..+.+.|..+|+|=- ++.++++.
T Consensus 24 ~g~~~~~~~~~---~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~--s~~~~~gi 90 (93)
T PF00893_consen 24 HGFTQLIPTIL---AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESL--SLSKWLGI 90 (93)
T ss_dssp ----------H---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HhhcchhhHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCC--CHHHHhhe
Confidence 44566654443 334566667899999999999999999887777788888999999944 55565544
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=87.29 E-value=0.35 Score=33.88 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeee
Q 031314 52 ITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLL 118 (161)
Q Consensus 52 i~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lL 118 (161)
..-....++|+++-+++.+.++.+ .-...+.+.|.++++|-- ++. -..|..+++.|+.++
T Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~--~~~----~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 65 ALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERP--SWR----QIIGIILIIIGVVLI 124 (126)
T ss_pred ehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHH
Confidence 444566789999999999999988 677788888889998854 443 445666677776654
No 16
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=86.92 E-value=0.92 Score=33.95 Aligned_cols=79 Identities=22% Similarity=0.173 Sum_probs=50.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhh
Q 031314 34 QLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILS 113 (161)
Q Consensus 34 qf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~ 113 (161)
.|+++..++ .++++...-..+|-+|+|.=+-.+-+++-=-.=+..+.+.|.++|+|=- ++. =++|..+++.
T Consensus 26 gf~~~~~~i---l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l--~~~----~~~gl~Liia 96 (106)
T COG2076 26 GFTRLWPSI---LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESL--SLI----KLLGLALILA 96 (106)
T ss_pred cccccchHH---HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcC--CHH----HHHHHHHHHH
Confidence 355555444 3445566667889999998665544333333334455667889999943 333 3467788899
Q ss_pred heeeeccc
Q 031314 114 GTFLLHKT 121 (161)
Q Consensus 114 GV~lLs~~ 121 (161)
||..|...
T Consensus 97 Gvi~Lk~~ 104 (106)
T COG2076 97 GVIGLKLG 104 (106)
T ss_pred HHHHhhhc
Confidence 99887643
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=86.68 E-value=1.6 Score=36.19 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeee
Q 031314 45 MIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLL 118 (161)
Q Consensus 45 ~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lL 118 (161)
...+.+++. ....++|+++-+++.+.|..|.. -..+++-|.++++|-- ++ .-..|..+++.|+.++
T Consensus 216 ~~~~~s~l~-~~l~~~al~~~~a~~~~~~~~l~-pv~a~l~g~~~lgE~~--~~----~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 216 LGGLMIGGA-YALVLWAMTRLPVATVVALRNTS-IVFAVVLGIWFLNERW--YL----TRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHH-HHHHHHHHhhCCceEEEeecccH-HHHHHHHHHHHhCCCc--cH----HHHHHHHHHHHhHHhC
Confidence 333444444 44668999999999999998875 5666677888889844 33 4456777888888764
No 18
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=83.83 E-value=1.3 Score=31.97 Aligned_cols=65 Identities=25% Similarity=0.290 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCC
Q 031314 53 TQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 125 (161)
Q Consensus 53 ~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~ 125 (161)
........|+++-+ ..+.|+++ ....++.+.|.++|+| +.++.+ ..|..++++||.++...+...
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~i~~-~~pi~~~ll~~~~~~e--r~~~~~----~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAAIFS-LSPIFTALLSWLFFKE--RLSPRR----WLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHHHHH-HHHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHHHHHhhhhccc
Confidence 34555668888888 56666655 5778888888999997 556554 457778888998887665443
No 19
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=82.32 E-value=5.2 Score=30.16 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=43.5
Q ss_pred HHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeee
Q 031314 60 KALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLL 118 (161)
Q Consensus 60 kAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lL 118 (161)
-.|...|=++.+|+....-=.++.++|.++.+|... . --.+|+.++++||.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~--~----~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS--R----RTWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc--h----hHHHHHHHHHcCeeee
Confidence 578999999999998887778888889999888652 2 3478999999999863
No 20
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=80.68 E-value=8 Score=31.01 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=46.0
Q ss_pred hhHHHH--HHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhh
Q 031314 37 YPQTWI--FTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSG 114 (161)
Q Consensus 37 ~~~ty~--~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~G 114 (161)
.+..|. +....+.+.+.+.-| ++|+++-+++.+..+.| .-...+.+-+.++++|- .++.+ ..|..+++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E~--~~~~~----~~G~~li~~g 258 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLW-NKGLTLVDPSAASILAL-AEPLVALLLGLLILGET--LSLPQ----LIGGALIIAA 258 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhCCC--CCHHH----HHHHHHHHHh
Confidence 444553 334444455555544 89999999999988887 44555666777788883 35544 4566666666
Q ss_pred e
Q 031314 115 T 115 (161)
Q Consensus 115 V 115 (161)
+
T Consensus 259 ~ 259 (260)
T TIGR00950 259 V 259 (260)
T ss_pred c
Confidence 5
No 21
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=76.23 E-value=4.9 Score=35.39 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=43.2
Q ss_pred HHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCC
Q 031314 57 YLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 125 (161)
Q Consensus 57 yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~ 125 (161)
.-|+++++-+++.+-+..+.. -.++.+.|.++++|= +++. -++|.++++.|+++.++.|.+|
T Consensus 272 lw~~~v~~~ga~~as~~~~L~-PV~a~llg~l~LgE~--lt~~----~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLS-ILIAVVMGAIFLNDS--LYLG----CLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHhccCchHHHHHHhHH-HHHHHHHHHHHhCCC--CcHH----HHHHHHHHHHHHHHHHhhhhhh
Confidence 479999999988766555443 445666677778873 3443 3478889999999987655444
No 22
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=73.50 E-value=5.3 Score=33.76 Aligned_cols=68 Identities=9% Similarity=0.110 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhc-ccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccC
Q 031314 52 ITQMNYLNKALD-TFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTK 122 (161)
Q Consensus 52 i~Qi~yLNkAL~-~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k 122 (161)
..+.-...++++ .=.++.-.++-+.- -..+.+.|..+++|-. ++.++..+.+|+.+++.|+.++...|
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~-pvia~~~~v~~l~E~~--~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLG-VIISTLGGILILGEKK--TKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHH-HHHHHHHHHHHhccCC--CcceeehhHHHHHHHHHHHHHHhccC
Confidence 555555567777 44454444555555 7788888999999976 78899999999999999998876543
No 23
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=71.18 E-value=27 Score=30.75 Aligned_cols=61 Identities=10% Similarity=0.069 Sum_probs=38.5
Q ss_pred HHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCC
Q 031314 58 LNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 125 (161)
Q Consensus 58 LNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~ 125 (161)
.+-.++.-+++.+.. ---.=...+++.+.++|++-- ++ ..++|+.++++|+++.+..+++.
T Consensus 250 ~p~~l~~ssAt~~nL-sLLTsd~~ali~~i~~f~~~~--~~----ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 250 VPIVLRMSSATFFNL-SLLTSDFYALIIDIFFFGYKF--SW----LYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHhCccceeeh-HHHHhhHHHHHHHHHhcCccc--cH----HHHHHHHHHHHHhheEEccCCcc
Confidence 455566666654433 223334456777888888732 33 46788999999999988655444
No 24
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=67.72 E-value=26 Score=29.22 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=51.3
Q ss_pred chhHHHHH-HHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhh
Q 031314 36 IYPQTWIF-TMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSG 114 (161)
Q Consensus 36 ~~~~ty~~-l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~G 114 (161)
.++..|.. +..-+++.+.+....|+++++-+++.+.++.|.- -..+.+-|.++++|-- ++.+ +.|..+++.|
T Consensus 203 ~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~-Pv~a~l~~~l~lgE~~--~~~~----~iG~~lIl~~ 275 (293)
T PRK10532 203 WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSME-PALAAVSGMIFLGETL--TLIQ----WLALGAIIAA 275 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhH-HHHHHHHHHHHhCCCC--cHHH----HHHHHHHHHH
Confidence 34555532 3344455666777779999999998888777654 4455666777788853 4444 4566666666
Q ss_pred eeeecccC
Q 031314 115 TFLLHKTK 122 (161)
Q Consensus 115 V~lLs~~k 122 (161)
+.......
T Consensus 276 ~~~~~~~~ 283 (293)
T PRK10532 276 SMGSTLTI 283 (293)
T ss_pred HHHHHhcC
Confidence 66655443
No 25
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=62.86 E-value=2.4 Score=32.71 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=26.3
Q ss_pred eecccCCCCchhHHHHHHHHHHHhhheeeeccc
Q 031314 89 MFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 89 ~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
||+-- .-++|++.++.+.++++++|++||.++
T Consensus 26 ~fR~E-D~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 26 FFRVE-DATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred heecC-CCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34443 458899999999999999999999764
No 26
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=58.18 E-value=17 Score=27.47 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHhhheeeec
Q 031314 100 QIVTEICGFVTILSGTFLLH 119 (161)
Q Consensus 100 ~i~~~~~G~lii~~GV~lLs 119 (161)
.+...+.|....+.|+..+.
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655443
No 27
>PRK13499 rhamnose-proton symporter; Provisional
Probab=57.27 E-value=18 Score=32.13 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccC-CCCchhHHHHHHHHHHHhhheeeecc
Q 031314 48 LVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWD-RQNPTQIVTEICGFVTILSGTFLLHK 120 (161)
Q Consensus 48 v~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~-~~~~~~i~~~~~G~lii~~GV~lLs~ 120 (161)
+.-++.|+.+. ++.++---+.-.|+---.=...+.+-+.++|+||+ .++..+....+.|++++++|+.+-+.
T Consensus 81 ~~W~iG~i~~~-~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 81 ALWGIGGITYG-LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHhhhhhHH-HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34466677665 78888888888898777777777777899999998 23444555688999999999998776
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=55.62 E-value=17 Score=30.39 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeeccc
Q 031314 48 LVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 48 v~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
+++...+....|+++++.+++.+.++.+ +-=..+++-|.++++|-- ++. ..+|..++++|+++....
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~~~~~l~lgE~~--~~~----~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSL-LVPVVGLASAALLLDERL--TGL----QFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHhCCCc--cHH----HHHHHHHHHHHHHHHhcc
Confidence 4555666677889999999988877655 335567777888888843 333 367788888999876543
No 29
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=54.39 E-value=18 Score=26.99 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecch---hhhhHHHhhhhhceee-ecccCCCCchhHHHHHHHHHHH
Q 031314 36 IYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPI---YYVMFTSLTILASVIM-FKDWDRQNPTQIVTEICGFVTI 111 (161)
Q Consensus 36 ~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi---~yv~fT~~~Ii~g~I~-f~e~~~~~~~~i~~~~~G~lii 111 (161)
.|-.+|++++++.+.+.. +++. -++-...|. .-.+|-. .+++|+.+ .+++.+.+....+-.++|..++
T Consensus 5 ~Hi~sWvl~iIlf~~a~~----~~~~---g~~k~~k~~~MilRl~Yll-iiisG~~L~~~~~~~~~~l~~iK~l~gl~vI 76 (110)
T PF07457_consen 5 IHITSWVLLIILFIVAYF----LYSK---GKTKKAKILHMILRLFYLL-IIISGVWLFIRTFAGNPMLYIIKMLLGLIVI 76 (110)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhc---ccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 477889988887777664 1121 111111221 2234444 44445544 4559999999999999999887
Q ss_pred hhheeeecccCCCC
Q 031314 112 LSGTFLLHKTKDAV 125 (161)
Q Consensus 112 ~~GV~lLs~~k~~~ 125 (161)
-.-=..++++|+.+
T Consensus 77 ~lmEm~l~rkkk~k 90 (110)
T PF07457_consen 77 GLMEMALARKKKGK 90 (110)
T ss_pred HHHHHHHHHHHcCC
Confidence 66656666666544
No 30
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=52.10 E-value=16 Score=25.38 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=29.4
Q ss_pred CchhHHHHHHHHHHHhhheeeecccCCCCC-CCCcch
Q 031314 97 NPTQIVTEICGFVTILSGTFLLHKTKDAVD-GSSASI 132 (161)
Q Consensus 97 ~~~~i~~~~~G~lii~~GV~lLs~~k~~~~-~~~~~~ 132 (161)
+-.+...+.+|+.+++.|-.+.+..++.++ ..+|++
T Consensus 4 gk~Nyill~iG~~vIilGfilMsg~~s~dp~~fn~~I 40 (69)
T PF11297_consen 4 GKKNYILLAIGIAVIILGFILMSGGGSDDPNVFNPDI 40 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHheeCCCCCCccccCccc
Confidence 446788999999999999999999887774 446665
No 31
>PRK13499 rhamnose-proton symporter; Provisional
Probab=51.92 E-value=7.5 Score=34.51 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=33.9
Q ss_pred HhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeeccc
Q 031314 80 SLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 80 ~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
..+-+.|+ +.+||++.+.......++|+++++.|..++...
T Consensus 302 iistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 302 LCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 34445566 599999999999999999999999999887643
No 32
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=50.39 E-value=15 Score=31.66 Aligned_cols=102 Identities=15% Similarity=0.274 Sum_probs=57.5
Q ss_pred CeeeehHHHHHHHHHHHhc---CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhcee
Q 031314 12 SLSVMSVKALGIALKLTFE---GMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVI 88 (161)
Q Consensus 12 s~tVl~~K~~~~~l~~~~~---g~nqf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I 88 (161)
+.+.+.-+++|.++-..+- .++++.+..+|.=++.=+.-.+.=+-|+ -|-+.---+.=.|+-|.- ...+-++|..
T Consensus 164 ~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~~-is~~~~G~a~af~lSQ~~-vvIStlgGI~ 241 (269)
T PF06800_consen 164 GWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFYL-ISAQKNGVATAFTLSQLG-VVISTLGGIF 241 (269)
T ss_pred hhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHHH-HhHHhccchhhhhHHhHH-HHHHHhhhhe
Confidence 4455556666655543221 1444555555542221111111111111 112233334445666665 4556789999
Q ss_pred eecccCCCCchhHHHHHHHHHHHhhheee
Q 031314 89 MFKDWDRQNPTQIVTEICGFVTILSGTFL 117 (161)
Q Consensus 89 ~f~e~~~~~~~~i~~~~~G~lii~~GV~l 117 (161)
+++|.+ +..++...++|+++++.|..+
T Consensus 242 il~E~K--t~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 242 ILKEKK--TKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred EEEecC--chhhHHHHHHHHHHHHHhhhc
Confidence 999988 778999999999999888765
No 33
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=49.43 E-value=37 Score=26.95 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=47.3
Q ss_pred HHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCCC
Q 031314 54 QMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVD 126 (161)
Q Consensus 54 Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~~ 126 (161)
-....+.+++.-+.+...++.+..=-...+++..++++|-- +..++ .|.++.+.|+.++......+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~--~~~~~----~~~~~~~~Gv~lv~~~~~~~~ 149 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERL--SLLQI----LGILLALAGVLLILLGGGGGG 149 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCC--cHHHH----HHHHHHHHhHHheecCCCcch
Confidence 33444577888888888888888777777777766668744 44444 457777899999987666543
No 34
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=49.29 E-value=23 Score=29.47 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCC
Q 031314 51 VITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKD 123 (161)
Q Consensus 51 ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~ 123 (161)
.+.-....|+++++-+++.+.++.|.-=. .+.+-|.++++|- .++. .+.|..+++.|+++++.++.
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi-~a~i~~~~~l~E~--~t~~----~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPV-VAVLLGTGLGGET--LSPI----EWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHH-HHHHHHHHHcCCC--CcHH----HHHHHHHHHHHHHHHHHHHh
Confidence 33444567899999999888877665444 4555567777774 3433 36788899999988876443
No 35
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=46.07 E-value=39 Score=28.25 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccC
Q 031314 48 LVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWD 94 (161)
Q Consensus 48 v~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~ 94 (161)
+.+++.|. ..|+|+++.+++.+.|+.|.-=.. +++-|.++++|--
T Consensus 221 ~~t~i~~~-~~~~a~~~~~a~~~s~~~~l~Pv~-a~~~g~l~l~E~~ 265 (296)
T PRK15430 221 IVTTVPLL-CFTAAATRLRLSTLGFFQYIGPTL-MFLLAVTFYGEKP 265 (296)
T ss_pred HHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHcCCC
Confidence 35666666 889999999999999888876554 4455677788853
No 36
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=45.06 E-value=87 Score=24.75 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=41.3
Q ss_pred HHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeeccc
Q 031314 54 QMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 54 Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
-....+++++.-+++.+.|+.+ .-...+++-+.++++|-- +..+ ..|..+++.|+.+...+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~l~~~e~~--~~~~----~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSL-LEPVFAALLGVLLLGEPL--SPAQ----LLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHH-HHHHHHHHHHHHHhCCCC--cHHH----HHHHHHHHHHHHHHhcc
Confidence 3344579999999999998873 334444446777888854 3333 45557888888777655
No 37
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=43.67 E-value=27 Score=29.11 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCC
Q 031314 60 KALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 125 (161)
Q Consensus 60 kAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~ 125 (161)
+++++-+++...-. ..+=...+++-|.++++|- +++.+ .+|..+++.|+++.++.|.++
T Consensus 240 ~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~--lt~~~----~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 240 MLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTK--ISPQQ----VFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHccCCchHHHHH-hhhhhhheeeeehhhcCCC--CchhH----HHHHHHHHHHHHHHHHHhccC
Confidence 56666665544333 3333455666778888883 45544 457778899998887765444
No 38
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=42.49 E-value=17 Score=25.38 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=37.3
Q ss_pred ceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhhe
Q 031314 67 TAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGT 115 (161)
Q Consensus 67 t~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV 115 (161)
...++|+.|++-.++=++.+..-|.+..+-++.-.+..+.|+...+.|.
T Consensus 13 ~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~ 61 (76)
T PF11970_consen 13 SMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGF 61 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCH
Confidence 3467888888888888888888887666667777777778888777774
No 39
>PRK11689 aromatic amino acid exporter; Provisional
Probab=41.05 E-value=41 Score=28.09 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecc
Q 031314 49 VCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHK 120 (161)
Q Consensus 49 ~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~ 120 (161)
.+++.++-| |+++++-+++.+.+..|.. -..+++-|.++++|-- + ....+|..+++.|+.+...
T Consensus 224 ~t~~~~~l~-~~al~~~~a~~~s~~~~l~-Pv~a~i~~~~~lgE~~--~----~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 224 AMGFGYAAW-NVGILHGNMTLLATASYFT-PVLSAALAALLLSTPL--S----FSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHH-HHHHHccCHHHHHHHHHhH-HHHHHHHHHHHhCCCC--c----HHHHHHHHHHHHhHHHHhh
Confidence 455555555 9999999988777666543 4456677778888843 3 3445678888888866543
No 40
>PF04276 DUF443: Protein of unknown function (DUF443) ; InterPro: IPR005915 The members of this family share 50 % or greater sequence identity. They are found as eleven tandem genes, arranged head-to-tail, in Staphylococcus aureus (strain COL). Distant full-length homologs are found in a Staphylococcus haemolyticus plasmid and in Bacillus halodurans. The function of these proteins is unknown.
Probab=40.84 E-value=1.5e+02 Score=23.90 Aligned_cols=61 Identities=25% Similarity=0.400 Sum_probs=42.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhc--ccC-------ceeecc----------hhhhhHHHhhhhhceeee-ccc
Q 031314 34 QLIYPQTWIFTMIVLVCVITQMNYLNKALD--TFN-------TAVVSP----------IYYVMFTSLTILASVIMF-KDW 93 (161)
Q Consensus 34 qf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~--~fd-------t~~VvP----------i~yv~fT~~~Ii~g~I~f-~e~ 93 (161)
|+....-+++.++.++.++.=-.|+||-++ .++ ...+.| ..|+++...++..-..++ .|.
T Consensus 86 ~~~~~i~~~i~~i~~l~v~~l~~~l~kk~k~~i~~~~~~~~~ki~l~P~~~K~~~~~lf~yi~~~~~~i~~~~~fi~~~~ 165 (199)
T PF04276_consen 86 QSSRIINIIICIIVILGVLILRIYLNKKLKKKIYNRNKNSKQKIILIPETFKNFFKNLFAYIFFLFFSIFLFYMFITNEG 165 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceEEEEEEcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444455555566666667788888877 666 568899 688888888888888887 443
Q ss_pred C
Q 031314 94 D 94 (161)
Q Consensus 94 ~ 94 (161)
+
T Consensus 166 ~ 166 (199)
T PF04276_consen 166 Q 166 (199)
T ss_pred c
Confidence 3
No 41
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=40.77 E-value=58 Score=27.74 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=40.5
Q ss_pred HhcccCceeecch--------hhhhHHHhhhhhcee-----eecccCCCCchhHHHHHHHHHHHhhheeeecccCCCC
Q 031314 61 ALDTFNTAVVSPI--------YYVMFTSLTILASVI-----MFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 125 (161)
Q Consensus 61 AL~~fdt~~VvPi--------~yv~fT~~~Ii~g~I-----~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~ 125 (161)
+|=.-....++|+ -+-.|++.+++.|.. +|..-++ .+.+-.+-.+|..++++|..+.+.-|.+.
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~-~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQ-VPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccc-ccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 3333344556665 467899988888865 6665444 45566666777777777776666544444
No 42
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.60 E-value=49 Score=29.50 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=66.5
Q ss_pred cccCeeeehHHHHHHHHHHHhc-CCc---ccchhHHHHHHHHHHHHHHHHHHHHHH-HhcccCceeecchhhhhHHHhhh
Q 031314 9 LVGSLSVMSVKALGIALKLTFE-GMN---QLIYPQTWIFTMIVLVCVITQMNYLNK-ALDTFNTAVVSPIYYVMFTSLTI 83 (161)
Q Consensus 9 llGs~tVl~~K~~~~~l~~~~~-g~n---qf~~~~ty~~l~~lv~~ai~Qi~yLNk-AL~~fdt~~VvPi~yv~fT~~~I 83 (161)
.+|+-..+--|+.-.+-+...+ |+. -+++|.-| ..++..++.++ .|= |-..-.+++|+|+--.-...+++
T Consensus 32 ~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww---~G~ltm~vGei--~NFaAYaFAPasLVtPLGAlsvi~sai 106 (335)
T KOG2922|consen 32 FIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWW---AGMLTMIVGEI--ANFAAYAFAPASLVTPLGALSVIISAI 106 (335)
T ss_pred EEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHH---HHHHHHHHHhH--hhHHHHhhchHhhhccchhHHHHHHHH
Confidence 4555556666676444433232 333 35554444 44444444443 333 34456788999999999999999
Q ss_pred hhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccCCCC
Q 031314 84 LASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 125 (161)
Q Consensus 84 i~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k~~~ 125 (161)
++..++=+.++ ..-.+||.+.+.|-.++=.+.+.+
T Consensus 107 la~~~L~Ekl~-------~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 107 LASFFLKEKLN-------LLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHHHHHHH-------HhhhhheeEEecccEEEEEecCcc
Confidence 99998877665 334589999999988776554444
No 43
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.44 E-value=1e+02 Score=25.32 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHhhheeeecccCCCCCCCCcchhcccccCCCCCCCCCCCccccccCCCCC
Q 031314 99 TQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENAYDPEGMPLRRQDNMRP 160 (161)
Q Consensus 99 ~~i~~~~~G~lii~~GV~lLs~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (161)
+-++...+|+-.+=.=+..|+.+-|.+ . +|..|++..|-|+.|-|||
T Consensus 63 ~YII~Y~LgIYlLNlfiaFLtPk~Dp~--------------~-~~~~dg~~Lpt~~~dEFrP 109 (188)
T KOG1688|consen 63 FYIITYALGIYLLNLFIAFLTPKVDPE--------------L-QDADDGPSLPTRKSDEFRP 109 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCch--------------h-hcccCCCCCCCCCccccch
Confidence 456777777655544455566552222 1 1334667777778888887
No 44
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=38.41 E-value=37 Score=25.64 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHhhheeee
Q 031314 99 TQIVTEICGFVTILSGTFLL 118 (161)
Q Consensus 99 ~~i~~~~~G~lii~~GV~lL 118 (161)
....++.+|++-++.|..-.
T Consensus 91 ~g~~~~~~G~~~i~l~~~~~ 110 (136)
T PF08507_consen 91 IGLLLFLVGVIYIILGFFCP 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 34567778888888887553
No 45
>PRK13673 hypothetical protein; Provisional
Probab=37.14 E-value=45 Score=25.41 Aligned_cols=84 Identities=13% Similarity=0.247 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeeccc-CCCCchhHHHHHHHHHHHhhh
Q 031314 36 IYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDW-DRQNPTQIVTEICGFVTILSG 114 (161)
Q Consensus 36 ~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~-~~~~~~~i~~~~~G~lii~~G 114 (161)
.|-.+|++.+++..-+..=.. | +=+.+. .+-=+.=.+| ...+++|+.++.+. .+.+....+=.++|+.++-.-
T Consensus 4 ~Hi~sWvi~iILf~vay~l~s--~-~~~~~k--i~hMilRLfy-il~iiTG~~l~~~~~~~~~~l~~~K~l~gi~vIg~m 77 (118)
T PRK13673 4 LHITSWVLAIILFFVAYSLYS--G-GSKKAK--ILHMILRLFY-ILIIITGFWLLIRSFGSNHMLYILKMLLGIIVIGLM 77 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--c-CCccch--HHHHHHHHHH-HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Confidence 467789888777766533111 1 122221 1111122233 34566665555554 666777777888998877666
Q ss_pred eeeecccCCCC
Q 031314 115 TFLLHKTKDAV 125 (161)
Q Consensus 115 V~lLs~~k~~~ 125 (161)
=..+.++|+.+
T Consensus 78 Em~l~r~kk~k 88 (118)
T PRK13673 78 EMSLAKRKKGK 88 (118)
T ss_pred HHHHHHHHcCC
Confidence 66666655543
No 46
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=35.76 E-value=1.1e+02 Score=25.60 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=49.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhh
Q 031314 35 LIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSG 114 (161)
Q Consensus 35 f~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~G 114 (161)
..||..+..++....+...=..+.+.-.+.+++....=+-= .=...+++-|.++|++ .+++.++++ ..+++.|
T Consensus 219 ~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t-~Rk~~sillS~~~f~~--~~~~~~~~G----~~lv~~g 291 (303)
T PF08449_consen 219 SAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTT-LRKFLSILLSVIIFGH--PLSPLQWIG----IVLVFAG 291 (303)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHH-HHHHHHHHHHHHhcCC--cCChHHHHH----HHHhHHH
Confidence 36777776666666665554456678888888765543322 2245677788888974 677777654 4556666
Q ss_pred eeeecc
Q 031314 115 TFLLHK 120 (161)
Q Consensus 115 V~lLs~ 120 (161)
+.+=+.
T Consensus 292 ~~~~~~ 297 (303)
T PF08449_consen 292 IFLYSY 297 (303)
T ss_pred HHHHHH
Confidence 655433
No 47
>PF15383 TMEM237: Transmembrane protein 237
Probab=34.91 E-value=38 Score=28.89 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=31.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHH----------HHHHHhcccCceeecchhhhhHHHhhhhh
Q 031314 35 LIYPQTWIFTMIVLVCVITQMN----------YLNKALDTFNTAVVSPIYYVMFTSLTILA 85 (161)
Q Consensus 35 f~~~~ty~~l~~lv~~ai~Qi~----------yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~ 85 (161)
+.+|.-.++.+++++|.+.=+. .+-+.+......+.+++|++.+.++....
T Consensus 137 la~p~~~~fY~l~~is~VSafDr~dl~~~~~~~~r~~~~~~~~~lai~ly~~~lvlsls~~ 197 (253)
T PF15383_consen 137 LAYPAQSLFYFLLAISTVSAFDRYDLAHFSMAHLRGFLKLDPGALAILLYFIALVLSLSCQ 197 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhcccHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 4445444455555555554333 34455667777788899999888766544
No 48
>PLN02392 probable steroid reductase DET2
Probab=33.82 E-value=1e+02 Score=26.48 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 031314 48 LVCVITQMNYLNKALD 63 (161)
Q Consensus 48 v~~ai~Qi~yLNkAL~ 63 (161)
+..++.++||.|||+-
T Consensus 80 vl~~lf~~HY~~Ra~i 95 (260)
T PLN02392 80 LLMSPYLLHYFHRTCI 95 (260)
T ss_pred HHHHHHHHHHHhHHHh
Confidence 4456789999999863
No 49
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=32.35 E-value=13 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHhhheeeeccc
Q 031314 98 PTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 98 ~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
..++.+.+++.++.+.|+.++...
T Consensus 13 tLrigGLi~A~vlfi~Gi~iils~ 36 (50)
T PF02038_consen 13 TLRIGGLIFAGVLFILGILIILSG 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhccchHHHHHHHHHHHHHHHcC
Confidence 367888888888888888777654
No 50
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=31.72 E-value=1.3e+02 Score=23.85 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=40.5
Q ss_pred HHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeeccc
Q 031314 55 MNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 55 i~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
.-....|+++=+++...++ +...-..+.+-+.++++| +.+..++ .|+++.++|+.++...
T Consensus 61 ~~~~~~a~~~~~~~~~~ii-~~~~P~~~~~~~~l~~~e--~~~~~~~----~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 61 YVLYFVAVKRLPVGEAALL-LYLAPLYVTLLSDLMGKE--RPRKLVL----LAAVLGLAGAVLLLSD 120 (260)
T ss_pred HHHHHHHHHhcChhhhHHH-HhhhHHHHHHHHHHHccC--CCcHHHH----HHHHHHHHhHHhhccC
Confidence 3456899999887777655 445555566667778886 4566655 4666777888777643
No 51
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=30.51 E-value=98 Score=22.28 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=22.5
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031314 31 GMNQLIYPQTWIFTMIVLVCVITQMNYLN 59 (161)
Q Consensus 31 g~nqf~~~~ty~~l~~lv~~ai~Qi~yLN 59 (161)
+..-+.....+++++.++..++.|++|-|
T Consensus 19 k~~~~s~li~~~LilfviF~~~L~~yy~k 47 (83)
T PF05814_consen 19 KNEGFSELIITLLILFVIFFCVLQVYYIK 47 (83)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33356677778888888889999999975
No 52
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=30.15 E-value=1e+02 Score=27.65 Aligned_cols=78 Identities=13% Similarity=0.282 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhc---eeeecccCCCCchhHHHHHHHHHHHhhheee
Q 031314 41 WIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILAS---VIMFKDWDRQNPTQIVTEICGFVTILSGTFL 117 (161)
Q Consensus 41 y~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g---~I~f~e~~~~~~~~i~~~~~G~lii~~GV~l 117 (161)
|++..+.-+.=..|..+.-++=..--+. --.+-++.+..+.++.| .+..+||++.+....-.+.+|+.+++..+.+
T Consensus 259 ~~~~aLaG~lWy~qfffYg~G~s~lg~~-~~~~sW~i~ma~~vl~snvwGl~lkEWKg~s~kt~~vl~~G~~vlI~s~~i 337 (344)
T PF06379_consen 259 YLFCALAGVLWYSQFFFYGMGESKLGAS-GPFSSWAIHMALIVLFSNVWGLILKEWKGASKKTIRVLVLGIAVLILSVVI 337 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHH
Confidence 5565556666677888888776655533 11123444444444433 3568999999999999999999999988776
Q ss_pred ec
Q 031314 118 LH 119 (161)
Q Consensus 118 Ls 119 (161)
+.
T Consensus 338 vG 339 (344)
T PF06379_consen 338 VG 339 (344)
T ss_pred Hh
Confidence 54
No 53
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=29.70 E-value=1.6e+02 Score=25.69 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=41.7
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHHhcccCcee--ecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHh
Q 031314 36 IYPQTWIFTMIVLV-CVITQMNYLNKALDTFNTAV--VSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTIL 112 (161)
Q Consensus 36 ~~~~ty~~l~~lv~-~ai~Qi~yLNkAL~~fdt~~--VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~ 112 (161)
+||..|.=+..+.+ +++.| ++.=+....|.+.. ++-.--= .++|++|.++|..= +++.|++ |..++|
T Consensus 236 RhP~~~~~l~l~ai~s~LGQ-~fIF~tv~~FgPLtCSivTTTRK---fFTil~SVllf~np--ls~rQwl----gtvlVF 305 (337)
T KOG1580|consen 236 RHPYVFWDLTLLAIASCLGQ-WFIFKTVEEFGPLTCSIVTTTRK---FFTILISVLLFNNP--LSGRQWL----GTVLVF 305 (337)
T ss_pred hccHHHHHHHHHHHHHHhhh-HHHHHHHHHhCCeeEEEEeehHH---HHHHHHHHHHhcCc--CcHHHHH----HHHHHH
Confidence 56666544444444 45555 56667778887532 2222233 34678899999863 4666654 556666
Q ss_pred hheee
Q 031314 113 SGTFL 117 (161)
Q Consensus 113 ~GV~l 117 (161)
.|...
T Consensus 306 ~aL~~ 310 (337)
T KOG1580|consen 306 SALTA 310 (337)
T ss_pred HHhhh
Confidence 66543
No 54
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=29.17 E-value=1.4e+02 Score=24.92 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHH
Q 031314 38 PQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGF 108 (161)
Q Consensus 38 ~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~ 108 (161)
+..+...+.-......+....+.|+++=+.+...-++| ..-..+.+.+.++++| +.+..++++..+|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~v~l~~~~~l~E--~~~~~~~~g~~l~~ 137 (296)
T PRK15430 70 PQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYF-INPLVNIVLGMIFLGE--RFRRMQWLAVILAI 137 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH
Confidence 44433333334445567778899999988888777766 4466677777788886 56777777666544
No 55
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=25.56 E-value=90 Score=20.88 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Q 031314 41 WIFTMIVLVCVITQMNYLNKALDTFN 66 (161)
Q Consensus 41 y~~l~~lv~~ai~Qi~yLNkAL~~fd 66 (161)
..+++.++.|.+-+++++.|-.+-+|
T Consensus 5 ~~ilLsiiT~GIY~l~W~y~~~~~~~ 30 (75)
T PF14018_consen 5 KVILLSIITCGIYGLYWLYKIWKELN 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777888888888887777644
No 56
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=24.15 E-value=48 Score=28.85 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=67.6
Q ss_pred ccCeeeehHHHHHHHHHH---HhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhc
Q 031314 10 VGSLSVMSVKALGIALKL---TFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILAS 86 (161)
Q Consensus 10 lGs~tVl~~K~~~~~l~~---~~~g~nqf~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g 86 (161)
+.+.+.+.-+++|-.+-. ...+++-..+-.+|+-++.=+.-++.-+.+|--+=+.-.++-.. +-|.. -..+.++|
T Consensus 176 v~g~saiLPqAiGMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FS-lSQlg-ViisTiGG 253 (288)
T COG4975 176 VDGLSAILPQAIGMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFS-LSQLG-VIISTIGG 253 (288)
T ss_pred ccchhhhhHHHHHHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeee-Hhhhe-eeeeecce
Confidence 457777777777655543 33344455566777766555555555555554433333222110 11111 12355788
Q ss_pred eeeecccCCCCchhHHHHHHHHHHHhhheeeecccC
Q 031314 87 VIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTK 122 (161)
Q Consensus 87 ~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k 122 (161)
+.+++|=+ |..++...+.|.++++.|..+|..-|
T Consensus 254 Il~L~ekK--tkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 254 ILFLGEKK--TKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred EEEEeccC--chhhhhhhhhhHHHHHHHhhhhheec
Confidence 99999977 88999999999999999998887544
No 57
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=24.00 E-value=93 Score=26.75 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=38.2
Q ss_pred HHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeeccc
Q 031314 60 KALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 60 kAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
-|+..-.+++|.|+-=+-....++++..++=+.+. ..+ ..|+..++.|+.++-..
T Consensus 69 ~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~---~~~----~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 69 VALGFAPASLVAPLGALSLVFNAVLARFFLGEKLT---RRD----IVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccch---HhH----HhhHHHHHhhheeeEEe
Confidence 58888899999999877777777777776644433 333 46677777777665443
No 58
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=23.55 E-value=1e+02 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031314 36 IYPQTWIFTMIVLVCVITQMNYLNKALDT 64 (161)
Q Consensus 36 ~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~ 64 (161)
..|.+|.+...++.+...-++|+||.++.
T Consensus 222 ~~P~~~ala~~~~A~~g~gl~~~~~~~~~ 250 (252)
T COG3926 222 LSPLSYALASAVLAIGGLGLWYFNRKVKH 250 (252)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 46999999999999999999999998874
No 59
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=22.56 E-value=1.7e+02 Score=21.57 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHhcCCcccchhHHHHHHHHHHHHHHHHHH
Q 031314 24 ALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMN 56 (161)
Q Consensus 24 ~l~~~~~g~nqf~~~~ty~~l~~lv~~ai~Qi~ 56 (161)
-+|..++.+++ ++..++++.++.++.++|+-
T Consensus 27 QLk~vl~~g~~--~~~y~~~l~Li~iSlvLQv~ 57 (104)
T PF04923_consen 27 QLKYVLEVGPE--HPFYYFLLTLISISLVLQVV 57 (104)
T ss_pred HHHHHHHcCCC--CchHHHHHHHHHHHHHHHHH
Confidence 35555554443 67777888888888999863
No 60
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=22.03 E-value=65 Score=23.36 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=21.4
Q ss_pred cCCCCchhHHHHHHHHHHHhhheeeecc
Q 031314 93 WDRQNPTQIVTEICGFVTILSGTFLLHK 120 (161)
Q Consensus 93 ~~~~~~~~i~~~~~G~lii~~GV~lLs~ 120 (161)
|+.-..|.=+++++|+.+.+..+.++..
T Consensus 43 y~~sh~WRN~GIli~f~i~f~~~~~~~~ 70 (103)
T PF06422_consen 43 YSYSHRWRNFGILIAFWIFFIVLTLLAT 70 (103)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334567788899999988888888776
No 61
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.91 E-value=1.9e+02 Score=25.26 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=19.2
Q ss_pred HHHHhcCCcccc-----h--hHHHHHHHHHHHHHHHHHHHHHH
Q 031314 25 LKLTFEGMNQLI-----Y--PQTWIFTMIVLVCVITQMNYLNK 60 (161)
Q Consensus 25 l~~~~~g~nqf~-----~--~~ty~~l~~lv~~ai~Qi~yLNk 60 (161)
+...+.|.| |. + +..|+.++++++.++...+|+-|
T Consensus 271 liagiyGMN-f~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~r 312 (316)
T PRK11085 271 LVASSYGMN-FEFMPELKWSFGYPGAIILMILAGLAPYLYFKR 312 (316)
T ss_pred HHHhhcccc-cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777 32 1 23344555666666666777644
No 62
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=21.76 E-value=52 Score=31.09 Aligned_cols=54 Identities=19% Similarity=0.513 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcee--------ecchhhhhHH-HhhhhhceeeecccC
Q 031314 40 TWIFTMIVLVCVITQMNYLNKALDTFNTAV--------VSPIYYVMFT-SLTILASVIMFKDWD 94 (161)
Q Consensus 40 ty~~l~~lv~~ai~Qi~yLNkAL~~fdt~~--------VvPi~yv~fT-~~~Ii~g~I~f~e~~ 94 (161)
+|+..+.++..++ =+++|---|+++|..- .+|=+||--| ++++++|+|+.=||=
T Consensus 6 ~y~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~f~~~ltpkfyvaltgtsslisg~i~ifEWw 68 (539)
T PF04184_consen 6 TYLWLIWFLLVAF-LLYFLRAPLRLCENLNAVSVFLNTLTPKFYVALTGTSSLISGLILIFEWW 68 (539)
T ss_pred HHHHHHHHHHHHH-HHHHHhcchhccccHHHHHHHHhccCchheeeeccchHHHHHHHHHHHHH
Confidence 4444444333332 3677777788887643 5676777665 688999999877763
No 63
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=21.62 E-value=42 Score=27.76 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=16.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031314 35 LIYPQTWIFTMIVLVCVITQMNYLNKALDT 64 (161)
Q Consensus 35 f~~~~ty~~l~~lv~~ai~Qi~yLNkAL~~ 64 (161)
+..+..++..++.+++.+...+++.++.+.
T Consensus 46 ~~~~~~~i~~~~~~i~~~~~~~~~~~~~k~ 75 (248)
T PF11368_consen 46 NIPWISFIALLIIIILFLLTFYFIYKSRKY 75 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555443
No 64
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.18 E-value=39 Score=25.27 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHhhheeeecccCCCCCCCCc
Q 031314 98 PTQIVTEICGFVTILSGTFLLHKTKDAVDGSSA 130 (161)
Q Consensus 98 ~~~i~~~~~G~lii~~GV~lLs~~k~~~~~~~~ 130 (161)
|.-++.+++.+++++++.++.+++|.++ +..|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~-G~~P 33 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR-GLQP 33 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC
No 65
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.84 E-value=2e+02 Score=24.08 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031314 39 QTWIFTMIVLVCVITQMNYLNK 60 (161)
Q Consensus 39 ~ty~~l~~lv~~ai~Qi~yLNk 60 (161)
.+|.+++++++.++.-+.|+-|
T Consensus 293 gy~~~l~~m~~i~~~~~~~fkr 314 (318)
T TIGR00383 293 GYPAVLIVMAVIALGPLIYFRR 314 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555565656665666544
No 66
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=20.74 E-value=62 Score=27.97 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcccCceeec
Q 031314 51 VITQMNYLNKALDTFNTAVVS 71 (161)
Q Consensus 51 ai~Qi~yLNkAL~~fdt~~Vv 71 (161)
-..|.+|+||-++++||...+
T Consensus 111 ~~~~~yylsKflel~DTvFfV 131 (274)
T KOG3071|consen 111 FWSYLYYLSKFLELLDTVFFV 131 (274)
T ss_pred HHHHHHHHHHHHHHHhheeeE
Confidence 456899999999999998754
No 67
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=20.10 E-value=89 Score=28.50 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-cCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHH--hhheeeec
Q 031314 43 FTMIVLVCVITQMNYLNKALDT-FNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTI--LSGTFLLH 119 (161)
Q Consensus 43 ~l~~lv~~ai~Qi~yLNkAL~~-fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii--~~GV~lLs 119 (161)
+++.-..|++.+.+|-.++++. ++......+|.+.|....++++.. +.+ ..|++.-+..|+..+ ++++++|+
T Consensus 315 l~lFafTTilg~~~yge~~~~yl~~~~~~~~~~ri~~i~~~~~G~~~---~~~--~vW~~~Di~~~lmai~Nlial~lL~ 389 (416)
T PF01235_consen 315 LFLFAFTTILGWYYYGEKCAEYLFGGKKAIWIYRILFIAMVFIGAVI---DLD--LVWDLADIANGLMAIPNLIALLLLS 389 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEeeeehhhhhhhhhhcc---cch--hHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445556788899999999988 546667778888898888888864 333 567888787777755 46666664
Done!