Query 031314
Match_columns 161
No_of_seqs 105 out of 449
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.6 0.00055 1.9E-08 51.7 1.5 68 49-122 38-105 (137)
2 3b5d_A Multidrug transporter E 95.1 0.018 6.3E-07 41.2 3.8 69 48-122 37-105 (110)
3 2zxe_G FXYD10, phospholemman-l 28.9 13 0.00045 25.2 0.2 25 98-122 18-42 (74)
4 2jp3_A FXYD domain-containing 27.5 12 0.00043 24.9 -0.1 24 98-121 16-39 (67)
5 3b9w_A Ammonium transporter fa 21.3 1.1E+02 0.0038 26.5 4.7 46 58-107 284-329 (407)
6 2jo1_A Phospholemman; FXYD1, N 16.1 27 0.00092 23.5 -0.3 25 97-121 14-38 (72)
7 3eff_K Voltage-gated potassium 12.2 1.1E+02 0.0038 21.5 2.1 15 68-82 40-54 (139)
8 3u7d_B Protein HEG homolog 1; 11.4 62 0.0021 17.3 0.4 8 151-158 19-26 (26)
9 4gx0_A TRKA domain protein; me 10.0 4.1E+02 0.014 22.8 5.3 15 68-82 51-65 (565)
10 3vou_A ION transport 2 domain 9.9 4.5E+02 0.015 18.5 4.8 44 67-118 51-94 (148)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.64 E-value=0.00055 Score=51.73 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccC
Q 031314 49 VCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTK 122 (161)
Q Consensus 49 ~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k 122 (161)
++...-...+++|++.-+.+..+|+.-..=...+.+.|.++|+|=- ++.+ ++|..+++.||++++..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l--s~~~----~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--------C----HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcCC
Confidence 3444446688999999999999999655556667788889999843 4444 678889999999997644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.11 E-value=0.018 Score=41.24 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeecccC
Q 031314 48 LVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTK 122 (161)
Q Consensus 48 v~~ai~Qi~yLNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs~~k 122 (161)
+++...-...+++|++.-|.+.++|+.=..=...+.+.|.++|+|=- ++.+ .+|..+++.||.+++..+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~--s~~~----~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcCC
Confidence 33444456788999999999999999766667777888999999943 4444 678889999999987643
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=28.87 E-value=13 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHhhheeeecccC
Q 031314 98 PTQIVTEICGFVTILSGTFLLHKTK 122 (161)
Q Consensus 98 ~~~i~~~~~G~lii~~GV~lLs~~k 122 (161)
..++.+++++.++.+.||.+|-+.|
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HheeccchhHHHHHHHHHHHHHcCc
Confidence 4678888998888889988877554
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=27.55 E-value=12 Score=24.86 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHhhheeeeccc
Q 031314 98 PTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 98 ~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
..++.+++++.++.+.||.+|.+.
T Consensus 16 tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HheecchhhHHHHHHHHHHHHHcC
Confidence 467888888888888888877654
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=21.28 E-value=1.1e+02 Score=26.53 Aligned_cols=46 Identities=15% Similarity=-0.058 Sum_probs=27.5
Q ss_pred HHHHhcccCceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHH
Q 031314 58 LNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICG 107 (161)
Q Consensus 58 LNkAL~~fdt~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G 107 (161)
|++-++.-|+.-+.|+.-+-=...++..+..- .+. +..|+++....
T Consensus 284 l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa-~~~---~~~Ql~g~~~~ 329 (407)
T 3b9w_A 284 LESKAKTIDTCGVHNLHGLPGLLGGFSAILIV-PGI---AVAQLTGIGIT 329 (407)
T ss_dssp HHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHS-TTC---HHHHHHHHHHH
T ss_pred HHhcCCCCCCCCCeecchHHHHHHHHHHHHHc-cCC---cHHHHHHHHHH
Confidence 67779999999999997654444444433211 111 22466665543
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=16.14 E-value=27 Score=23.50 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHHhhheeeeccc
Q 031314 97 NPTQIVTEICGFVTILSGTFLLHKT 121 (161)
Q Consensus 97 ~~~~i~~~~~G~lii~~GV~lLs~~ 121 (161)
...++.+++++.++.+.||.+|.+.
T Consensus 14 ~tLRiGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 14 QSLQIGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHcC
Confidence 3477888899888888998887654
No 7
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=12.22 E-value=1.1e+02 Score=21.53 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=9.2
Q ss_pred eeecchhhhhHHHhh
Q 031314 68 AVVSPIYYVMFTSLT 82 (161)
Q Consensus 68 ~~VvPi~yv~fT~~~ 82 (161)
+..-.+||++-|..+
T Consensus 40 ~~~~a~yf~~~T~tT 54 (139)
T 3eff_K 40 TYPRALWWSVETATT 54 (139)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHheeeec
Confidence 445567777666655
No 8
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=11.43 E-value=62 Score=17.34 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=5.8
Q ss_pred cccccCCC
Q 031314 151 PLRRQDNM 158 (161)
Q Consensus 151 ~~~~~~~~ 158 (161)
..||.|||
T Consensus 19 dsrrrdyf 26 (26)
T 3u7d_B 19 ESRRRDYF 26 (26)
T ss_pred cchhcccC
Confidence 45788886
No 9
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=10.00 E-value=4.1e+02 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=9.0
Q ss_pred eeecchhhhhHHHhh
Q 031314 68 AVVSPIYYVMFTSLT 82 (161)
Q Consensus 68 ~~VvPi~yv~fT~~~ 82 (161)
+..-.+||++-|.++
T Consensus 51 ~~~~~~y~~~~t~tT 65 (565)
T 4gx0_A 51 SFMAGIYWTITVMTT 65 (565)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred chhhhhheeeeeeee
Confidence 455566776666554
No 10
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=9.92 E-value=4.5e+02 Score=18.50 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=21.8
Q ss_pred ceeecchhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeee
Q 031314 67 TAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLL 118 (161)
Q Consensus 67 t~~VvPi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lL 118 (161)
-+..-.+||++-|..++ =|-|. .|....+-++..+..+.|+.+.
T Consensus 51 ~~~~~a~y~~~~t~tTv-----GyGd~---~p~t~~~r~~~~~~~~~g~~~~ 94 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTV-----GDGNF---SPQTDFGKVFTILYIFIGIGLV 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTC-----CCSSC---CCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcc-----CCCCC---CCCCccHHHHHHHHHHHHHHHH
Confidence 34555678777766553 24443 3333344444444444444433
Done!