Query 031314
Match_columns 161
No_of_seqs 105 out of 449
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 19:48:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031314.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031314hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 15.9 79 0.0057 19.7 3.9 40 72-119 44-83 (103)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.7 1.5E+02 0.011 14.6 2.3 12 37-48 7-18 (26)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 7.6 1.8E+02 0.013 15.4 2.8 22 38-59 16-37 (37)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 6.8 36 0.0026 24.9 -0.8 18 70-87 153-170 (447)
5 d2ejna2 a.101.1.1 (A:75-144) A 6.7 74 0.0054 19.6 0.9 12 57-68 20-31 (70)
6 d1eysh2 f.23.10.1 (H:7-43) Pho 6.5 1.1E+02 0.008 16.5 1.5 15 34-48 7-21 (37)
7 d2cora2 g.39.1.3 (A:8-42) Pinc 6.3 1E+02 0.0075 16.4 1.3 11 150-160 21-32 (35)
8 d1m56d_ f.23.8.1 (D:) Bacteria 6.2 2.1E+02 0.016 15.6 2.7 19 34-52 18-36 (42)
9 d1qled_ f.23.8.1 (D:) Bacteria 6.0 1.8E+02 0.013 16.1 2.3 19 34-52 19-37 (43)
10 d1od6a_ c.26.1.3 (A:) Phosphop 5.9 1.4E+02 0.01 18.5 2.2 21 54-74 16-36 (160)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.92 E-value=79 Score=19.69 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=24.7
Q ss_pred chhhhhHHHhhhhhceeeecccCCCCchhHHHHHHHHHHHhhheeeec
Q 031314 72 PIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLH 119 (161)
Q Consensus 72 Pi~yv~fT~~~Ii~g~I~f~e~~~~~~~~i~~~~~G~lii~~GV~lLs 119 (161)
.+|+++-|..+ + .|.++.|....+=+++++..+.|+.+++
T Consensus 44 aly~~~vT~tT-----v---GYGDi~P~t~~gr~~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 44 ALWWSVETATT-----V---GYGDLYPVTLWGRCVAVVVMVAGITSFG 83 (103)
T ss_dssp HHHHHHHHHTT-----C---CCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeeecc-----c---ccCccccCChhHHHHHHHHHHHHHHHHH
Confidence 45666666555 2 3444566666677777777777776543
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.75 E-value=1.5e+02 Score=14.58 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHH
Q 031314 37 YPQTWIFTMIVL 48 (161)
Q Consensus 37 ~~~ty~~l~~lv 48 (161)
-|.+|.++..++
T Consensus 7 iw~fw~ffalli 18 (26)
T d1rzhh2 7 IYSFWIFLAGLI 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 477777766554
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.61 E-value=1.8e+02 Score=15.43 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 031314 38 PQTWIFTMIVLVCVITQMNYLN 59 (161)
Q Consensus 38 ~~ty~~l~~lv~~ai~Qi~yLN 59 (161)
.+.|-++++.+..+++--++.|
T Consensus 16 sLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777777776666654
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.77 E-value=36 Score=24.88 Aligned_cols=18 Identities=0% Similarity=0.045 Sum_probs=9.7
Q ss_pred ecchhhhhHHHhhhhhce
Q 031314 70 VSPIYYVMFTSLTILASV 87 (161)
Q Consensus 70 VvPi~yv~fT~~~Ii~g~ 87 (161)
..-++...+....+++..
T Consensus 153 ~~~~~~~~~~~g~~i~~~ 170 (447)
T d1pw4a_ 153 IVSVWNCAHNVGGGIPPL 170 (447)
T ss_dssp HHHHHHHHHHHHHTSHHH
T ss_pred cccccccccchhhhhhhh
Confidence 344555666666555543
No 5
>d2ejna2 a.101.1.1 (A:75-144) Allergen Fel d I-B chain {Cat (Felis catus) [TaxId: 9685]}
Probab=6.72 E-value=74 Score=19.57 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=10.4
Q ss_pred HHHHHhcccCce
Q 031314 57 YLNKALDTFNTA 68 (161)
Q Consensus 57 yLNkAL~~fdt~ 68 (161)
+||.-|+.||++
T Consensus 20 ~L~~~L~~fnaT 31 (70)
T d2ejna2 20 LLDLSLTKVNAT 31 (70)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHhcCC
Confidence 589999999986
No 6
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=6.54 E-value=1.1e+02 Score=16.49 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=9.8
Q ss_pred ccchhHHHHHHHHHH
Q 031314 34 QLIYPQTWIFTMIVL 48 (161)
Q Consensus 34 qf~~~~ty~~l~~lv 48 (161)
|..-|.+|+++..++
T Consensus 7 ql~ly~Fw~FFagLi 21 (37)
T d1eysh2 7 QITIWAFWLFFFGLI 21 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445577777776665
No 7
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.32 E-value=1e+02 Score=16.42 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=7.5
Q ss_pred cccc-ccCCCCC
Q 031314 150 MPLR-RQDNMRP 160 (161)
Q Consensus 150 ~~~~-~~~~~~~ 160 (161)
-||+ |.|-+.|
T Consensus 21 ~pL~Fr~d~YHp 32 (35)
T d2cora2 21 QPLIFKNDPYHP 32 (35)
T ss_dssp CCCCCSSSCCCT
T ss_pred CcceecCCCCCC
Confidence 5677 7776665
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.23 E-value=2.1e+02 Score=15.64 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=11.8
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 031314 34 QLIYPQTWIFTMIVLVCVI 52 (161)
Q Consensus 34 qf~~~~ty~~l~~lv~~ai 52 (161)
.|..|.+|..+++.++.+.
T Consensus 18 gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677778876665555443
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=6.02 E-value=1.8e+02 Score=16.08 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=11.8
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 031314 34 QLIYPQTWIFTMIVLVCVI 52 (161)
Q Consensus 34 qf~~~~ty~~l~~lv~~ai 52 (161)
.|-.|.+|..+++.++.+.
T Consensus 19 gFi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVF 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677788876665555443
No 10
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=5.90 E-value=1.4e+02 Score=18.45 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=16.7
Q ss_pred HHHHHHHHhcccCceeecchh
Q 031314 54 QMNYLNKALDTFNTAVVSPIY 74 (161)
Q Consensus 54 Qi~yLNkAL~~fdt~~VvPi~ 74 (161)
.+...++|++.||-..++|..
T Consensus 16 Hl~ii~~a~~~~D~v~i~~~~ 36 (160)
T d1od6a_ 16 HLDVIQRASRLFEKVTVAVLE 36 (160)
T ss_dssp HHHHHHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHHHHhCCEEEEeccC
Confidence 456678899999998888864
Done!