Query 031315
Match_columns 161
No_of_seqs 122 out of 600
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 19:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nxp_A Transcription initiatio 90.3 0.56 1.9E-05 34.2 5.6 110 16-129 35-146 (156)
2 2j49_A Transcription initiatio 78.1 0.46 1.6E-05 34.6 0.1 97 16-117 18-116 (148)
3 2j4b_A TAF5, transcription ini 74.6 0.98 3.3E-05 32.3 1.1 97 16-117 16-114 (138)
4 3c1q_A General secretion pathw 55.5 17 0.00056 24.4 4.3 18 6-23 24-42 (123)
5 2cp9_A EF-TS, EF-TSMT, elongat 46.0 8.8 0.0003 23.8 1.5 14 9-22 35-48 (64)
6 2dna_A Unnamed protein product 41.8 13 0.00045 23.2 1.8 17 9-25 45-61 (67)
7 1gng_X Frattide, glycogen synt 40.8 18 0.00061 20.0 2.0 20 3-22 16-36 (39)
8 2ekk_A UBA domain from E3 ubiq 39.2 21 0.00072 20.1 2.3 18 5-22 29-46 (47)
9 2knz_A Ubiquilin-4; cytoplasm, 36.8 18 0.00063 21.1 1.8 17 8-24 36-52 (53)
10 2da6_A Hepatocyte nuclear fact 36.7 83 0.0028 21.1 5.4 42 70-122 15-56 (102)
11 3sjr_A Uncharacterized protein 34.3 60 0.002 23.8 4.5 60 23-83 105-164 (175)
12 1whc_A RSGI RUH-027, UBA/UBX 3 32.5 21 0.00071 21.8 1.6 17 9-25 35-51 (64)
13 3iko_C Nucleoporin NUP84; NPC, 31.5 20 0.0007 30.4 1.9 21 2-22 183-203 (460)
14 3ej9_B Beta-subunit of trans-3 30.4 29 0.00098 21.9 2.0 26 98-123 12-37 (70)
15 4ac7_A Urease subunit gamma; h 30.3 78 0.0027 21.3 4.3 26 39-64 40-66 (100)
16 3dwl_G Actin-related protein 2 29.9 25 0.00084 25.6 1.9 23 2-24 42-64 (152)
17 2jpq_A UPF0352 protein VP2129; 29.6 16 0.00053 23.8 0.7 22 98-119 50-71 (83)
18 2bwb_A Ubiquitin-like protein 29.4 25 0.00087 20.0 1.5 13 8-20 32-44 (46)
19 2dah_A Ubiquilin-3; UBA domain 29.4 25 0.00086 20.7 1.6 15 8-22 34-48 (54)
20 1wgn_A UBAP1, ubiquitin associ 29.4 25 0.00086 21.7 1.6 15 8-22 43-57 (63)
21 3m20_A 4-oxalocrotonate tautom 29.2 43 0.0015 19.6 2.7 27 97-123 10-36 (62)
22 1z96_A DNA-damage, UBA-domain 28.7 27 0.00092 18.6 1.5 11 9-19 29-39 (40)
23 2fvh_A Urease gamma subunit; p 28.4 63 0.0021 22.4 3.6 26 39-64 60-86 (120)
24 1xb2_B EF-TS, elongation facto 28.4 29 0.001 27.7 2.2 40 9-48 30-98 (291)
25 4fur_A Urease subunit gamma 2; 27.6 91 0.0031 21.1 4.3 26 39-64 44-70 (104)
26 1k8k_G P16, ARP2/3 complex 16 27.1 39 0.0013 24.5 2.5 23 2-24 41-63 (151)
27 4ep8_A Urease subunit gamma; a 26.8 98 0.0034 20.7 4.3 26 39-64 40-66 (100)
28 1ify_A HHR23A, UV excision rep 26.6 28 0.00095 20.0 1.4 16 9-24 33-48 (49)
29 3gw4_A Uncharacterized protein 26.5 1.4E+02 0.0046 20.1 5.4 50 6-63 2-54 (203)
30 2jy5_A Ubiquilin-1; UBA, alter 25.7 36 0.0012 19.7 1.8 14 9-22 38-51 (52)
31 2pm7_A Protein WEB1, protein t 25.6 32 0.0011 28.6 2.1 21 2-22 149-169 (399)
32 3op1_A Macrolide-efflux protei 24.8 37 0.0013 27.3 2.3 22 2-23 169-190 (308)
33 2g3q_A Protein YBL047C; endocy 24.1 43 0.0015 18.3 1.8 14 9-22 29-42 (43)
34 2jrx_A UPF0352 protein YEJL; h 23.9 15 0.00052 23.9 -0.1 22 98-119 50-71 (83)
35 1wr1_B Ubiquitin-like protein 23.2 38 0.0013 20.3 1.6 15 8-22 42-56 (58)
36 1vej_A Riken cDNA 4931431F19; 22.8 48 0.0016 20.9 2.1 17 8-24 54-70 (74)
37 3ry0_A Putative tautomerase; o 22.6 53 0.0018 19.2 2.2 26 97-122 11-36 (65)
38 4a18_Q RPL36, 60S ribosomal pr 22.2 1.4E+02 0.0049 20.1 4.5 29 38-66 54-85 (104)
39 2x4k_A 4-oxalocrotonate tautom 21.6 57 0.002 18.4 2.2 25 98-122 15-39 (63)
40 1gyx_A YDCE, B1461, hypothetic 21.4 50 0.0017 20.2 2.0 27 97-123 12-38 (76)
41 3f3f_C Nucleoporin NUP85; stru 20.9 4E+02 0.014 23.2 8.2 45 3-49 249-295 (570)
42 1e9y_A Urease subunit alpha; h 20.9 1.2E+02 0.0042 23.4 4.4 26 39-64 40-67 (238)
43 2jr2_A UPF0352 protein CPS_261 20.9 58 0.002 20.8 2.1 20 98-117 49-68 (76)
44 1aip_C EF-TS, elongation facto 20.5 39 0.0013 25.5 1.4 47 9-59 29-102 (196)
45 1otf_A 4-oxalocrotonate tautom 20.2 64 0.0022 18.3 2.2 25 98-122 12-36 (62)
46 3mf7_A CIS-3-chloroacrylic aci 20.1 67 0.0023 22.7 2.7 27 96-122 11-37 (149)
No 1
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=90.29 E-value=0.56 Score=34.24 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHHhhcCCcccccc-CcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHHHhccccCCCcch
Q 031315 16 IEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG 94 (161)
Q Consensus 16 i~~i~~~~p~ll~~-~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~ 94 (161)
.+|+... +++.+. =..+.|=+-+.=|++||.+|...+|-.|-.++-..+. +.+.+.++++.++.--....+.++.
T Consensus 35 ~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~---~~~~~~i~~L~~i~~~~~l~~n~~~ 110 (156)
T 2nxp_A 35 KHFIECS-LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE---CYYQDDLRVLSSLTKKEHMKGNETM 110 (156)
T ss_dssp HHHHHTS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC---GGGHHHHHHHHTCCSHHHHTTCGGG
T ss_pred HHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH---HHHHHHHHHHhcCCCHHHHhhcHHH
Confidence 5666664 333322 2678999999999999999999999999987766664 4577788888777666666666666
Q ss_pred hhh-hHHHHhhhHHHHHHHHhhhccccCCCChhHHH
Q 031315 95 DLL-DISQRLKTASEVNAAILTSQSHEKDPKLPSLL 129 (161)
Q Consensus 95 ~Ll-~~~~r~~la~~vn~aiL~~~~~~~~~~L~~l~ 129 (161)
..+ +...+-.+.......++.+......+.+-.++
T Consensus 111 ~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Ii 146 (156)
T 2nxp_A 111 LDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIV 146 (156)
T ss_dssp GGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHH
T ss_pred HHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHH
Confidence 555 44555677777776777765443344444333
No 2
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=78.15 E-value=0.46 Score=34.57 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=59.6
Q ss_pred HHHhhcCCcccccc-CcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHHHhccccCCCcch
Q 031315 16 IEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG 94 (161)
Q Consensus 16 i~~i~~~~p~ll~~-~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~ 94 (161)
.+|+... +++.+. =..+.|=+-+.=|++||.+| .++|-.|-.++-..+. +.+.++++++.++.--...++.++.
T Consensus 18 r~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~---~~~~~~i~~L~~i~~p~hl~~n~~~ 92 (148)
T 2j49_A 18 KNWVDSS-LEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK---DFHGSEINRLFSVNSIDHIKENEVA 92 (148)
T ss_dssp HHHHHTS-CTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH---HHHHHHHHTTTTCCSHHHHHHCHHH
T ss_pred HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH---HHHHHHHHHHhcCCCHHHHhhCHHH
Confidence 5677664 333322 15789999999999999999 9999999887666553 3566677776665443333334433
Q ss_pred hhh-hHHHHhhhHHHHHHHHhhhc
Q 031315 95 DLL-DISQRLKTASEVNAAILTSQ 117 (161)
Q Consensus 95 ~Ll-~~~~r~~la~~vn~aiL~~~ 117 (161)
..+ +.+.+-.+....-..++.++
T Consensus 93 ~~fr~nKy~I~ls~~s~~lL~~fL 116 (148)
T 2j49_A 93 SAFQSHKYRITMSKTTLNLLLYFL 116 (148)
T ss_dssp HHHHSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHhCCeEEEECHHHHHHHHHHH
Confidence 333 33444455554444444443
No 3
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=74.57 E-value=0.98 Score=32.32 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=61.7
Q ss_pred HHHhhcCCcccccc-CcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHHHhccccCCCcch
Q 031315 16 IEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG 94 (161)
Q Consensus 16 i~~i~~~~p~ll~~-~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~ 94 (161)
.+|++.. +++.+. =..+.|=+-+.=|++||.+|..++|-.|-.++-..+.. . .++++++.++.--...++.++.
T Consensus 16 ~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~---~-~~~i~~L~~i~~~e~l~~n~~~ 90 (138)
T 2j4b_A 16 KTWIEDS-LDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYN---K-SEEIKQFESIYTVQHIHENNFA 90 (138)
T ss_dssp HHHHHHS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----C-HHHHHHHTTCCSHHHHHHCHHH
T ss_pred HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhh---H-HHHHHHHhcCCCHHHHhhCHHH
Confidence 5677664 333322 26789999999999999999999999998877666642 2 5566666655444444445544
Q ss_pred hhh-hHHHHhhhHHHHHHHHhhhc
Q 031315 95 DLL-DISQRLKTASEVNAAILTSQ 117 (161)
Q Consensus 95 ~Ll-~~~~r~~la~~vn~aiL~~~ 117 (161)
..+ +.+.+-.+.+..-..++.+.
T Consensus 91 ~~fr~nKy~I~ls~~s~~lL~~fL 114 (138)
T 2j4b_A 91 YTFKNSKYHLSMGRYAFDLLINFL 114 (138)
T ss_dssp HHHHHSCEEEEEEHHHHHHHHHHH
T ss_pred HHHHhCCeEEEECHHHHHHHHHHH
Confidence 433 44445556555555555554
No 4
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=55.49 E-value=17 Score=24.40 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=9.6
Q ss_pred hhhcC-CHHHHHHHhhcCC
Q 031315 6 AVQCG-NVEDAIEKVNDLN 23 (161)
Q Consensus 6 ~I~~G-~i~~Ai~~i~~~~ 23 (161)
++.+| .+.+|++.+.+..
T Consensus 24 ll~sGv~l~~aL~~~~~~~ 42 (123)
T 3c1q_A 24 LVQSGMPLEECLRAVAEQS 42 (123)
T ss_dssp HHHTTCCHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHc
Confidence 34444 3566666665544
No 5
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=45.99 E-value=8.8 Score=23.84 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=11.5
Q ss_pred cCCHHHHHHHhhcC
Q 031315 9 CGNVEDAIEKVNDL 22 (161)
Q Consensus 9 ~G~i~~Ai~~i~~~ 22 (161)
+||++.|+.|+++.
T Consensus 35 ~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 35 GGDLKQAEIWLHKE 48 (64)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 68999999998753
No 6
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.82 E-value=13 Score=23.22 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.6
Q ss_pred cCCHHHHHHHhhcCCcc
Q 031315 9 CGNVEDAIEKVNDLNPE 25 (161)
Q Consensus 9 ~G~i~~Ai~~i~~~~p~ 25 (161)
.||++.|++|+-.+-|+
T Consensus 45 ~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 45 DGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp TSCHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHHhCCCc
Confidence 69999999999888664
No 7
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=40.82 E-value=18 Score=20.03 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=13.6
Q ss_pred hhhhhhcCC-HHHHHHHhhcC
Q 031315 3 VKKAVQCGN-VEDAIEKVNDL 22 (161)
Q Consensus 3 I~~~I~~G~-i~~Ai~~i~~~ 22 (161)
+++++++|+ |.+|+..++.+
T Consensus 16 LQ~Llr~G~LIkEAVrRlq~~ 36 (39)
T 1gng_X 16 LQQLVLSGNLIKEAVRRLHSR 36 (39)
T ss_dssp HHHHHHHTCHHHHHHHHHHC-
T ss_pred HHHHHHhCcHHHHHHHHHHHc
Confidence 466777777 77777776654
No 8
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.19 E-value=21 Score=20.14 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=13.1
Q ss_pred hhhhcCCHHHHHHHhhcC
Q 031315 5 KAVQCGNVEDAIEKVNDL 22 (161)
Q Consensus 5 ~~I~~G~i~~Ai~~i~~~ 22 (161)
-+...|+++.|++|+-.|
T Consensus 29 AL~~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 29 ALLNTSTMEQATEYLLTH 46 (47)
T ss_dssp HHHHSCSHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 344467999999998654
No 9
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=36.76 E-value=18 Score=21.12 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.4
Q ss_pred hcCCHHHHHHHhhcCCc
Q 031315 8 QCGNVEDAIEKVNDLNP 24 (161)
Q Consensus 8 ~~G~i~~Ai~~i~~~~p 24 (161)
..||++.|++|+-.+-+
T Consensus 36 t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 36 TGGDINAAIERLLGSQL 52 (53)
T ss_dssp HTSCHHHHHHHHHHCCC
T ss_pred hCCCHHHHHHHHHHcCC
Confidence 46889999999976643
No 10
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.69 E-value=83 Score=21.07 Aligned_cols=42 Identities=12% Similarity=-0.056 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhHHHhccccCCCcchhhhhHHHHhhhHHHHHHHHhhhccccCC
Q 031315 70 QSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 122 (161)
Q Consensus 70 ~~~~~~l~~~~~LLay~~~~~sp~~~Ll~~~~r~~la~~vn~aiL~~~~~~~~ 122 (161)
+..+..|++.+.-=-| .+...|+.||+.+|++-|...|.++.
T Consensus 15 ~~ql~~Le~~F~~~~y-----------Ps~~~Re~LA~~ln~~~c~q~g~~~~ 56 (102)
T 2da6_A 15 PASQQILYQAYDRQKN-----------PSKEEREALVEECNRAECLQRGVSPS 56 (102)
T ss_dssp HHHHHHHHHHHTTCSS-----------CCHHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHcCCCC-----------CCHHHHHHHHHHHHHhhhcccccccc
Confidence 4556666665432222 25788999999999998776665443
No 11
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=34.25 E-value=60 Score=23.81 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=39.9
Q ss_pred CccccccCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcCCCCccchHHHHHHHHHhHHH
Q 031315 23 NPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALL 83 (161)
Q Consensus 23 ~p~ll~~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~~~~~~~~~~~~~l~~~~~LL 83 (161)
|+.-.++|+++.+.=....|+++|+.| ++.-..=|+.-|.-+.==.+.....|.++..|.
T Consensus 105 F~~yq~qhPd~~~ee~L~~Fm~lIgGG-iEqGF~EArdIL~GL~VleG~IA~~IdkTY~Lv 164 (175)
T 3sjr_A 105 MELYRQQHPDWTAPAIRQAFAPLARAG-LERGYQEACQVLRQLNVYTPAVAGQLQGLLLLT 164 (175)
T ss_dssp HHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhccccCcHHHHhHHHHHHHH
Confidence 333445678999999999999999966 666666677666654211344555666665553
No 12
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.52 E-value=21 Score=21.80 Aligned_cols=17 Identities=12% Similarity=0.226 Sum_probs=13.0
Q ss_pred cCCHHHHHHHhhcCCcc
Q 031315 9 CGNVEDAIEKVNDLNPE 25 (161)
Q Consensus 9 ~G~i~~Ai~~i~~~~p~ 25 (161)
+|+++.|++|+-+|-++
T Consensus 35 ~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 35 NQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp SCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhCCCC
Confidence 47899999999776543
No 13
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=31.53 E-value=20 Score=30.40 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.2
Q ss_pred hhhhhhhcCCHHHHHHHhhcC
Q 031315 2 AVKKAVQCGNVEDAIEKVNDL 22 (161)
Q Consensus 2 ~I~~~I~~G~i~~Ai~~i~~~ 22 (161)
.|-.+|++|++++|++||++.
T Consensus 183 ~i~~liR~G~~~eA~~lc~~~ 203 (460)
T 3iko_C 183 YIYELILAGAIDEALEEAKLS 203 (460)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHc
Confidence 366889999999999999775
No 14
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=30.45 E-value=29 Score=21.88 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=22.9
Q ss_pred hHHHHhhhHHHHHHHHhhhccccCCC
Q 031315 98 DISQRLKTASEVNAAILTSQSHEKDP 123 (161)
Q Consensus 98 ~~~~r~~la~~vn~aiL~~~~~~~~~ 123 (161)
+.+++.+|.+.|.+++.+..|.|.++
T Consensus 12 T~EQK~~lI~~VT~a~~eslgap~es 37 (70)
T 3ej9_B 12 SVARKQQLIRDVIDVTNKSIGSDPKI 37 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 67899999999999999999987664
No 15
>4ac7_A Urease subunit gamma; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_A* 1ie7_A* 1ubp_A* 4ubp_A* 3ubp_A* 2ubp_A* 4ep8_A* 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* ...
Probab=30.34 E-value=78 Score=21.27 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.7
Q ss_pred HHHHHHHHHcc-chHHHHHHHHHhcCC
Q 031315 39 QQRLIELIRNG-KVEEALEFAQEELAP 64 (161)
Q Consensus 39 ~q~fIElir~~-~~~eAl~yar~~l~~ 64 (161)
.-..+|.+|.| .+.+.+.+|++-+..
T Consensus 40 ~~~ilE~aRdG~sVaelm~~g~~~L~r 66 (100)
T 4ac7_A 40 TSFIMEGARDGKTVAMLMEEGKHVLTR 66 (100)
T ss_dssp HHHHHHHHHHTCCHHHHHHHGGGSCCG
T ss_pred HHHHHHHHHCCCCHHHHHHHhcccCCH
Confidence 56778899988 789999999987774
No 16
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=29.88 E-value=25 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.6
Q ss_pred hhhhhhhcCCHHHHHHHhhcCCc
Q 031315 2 AVKKAVQCGNVEDAIEKVNDLNP 24 (161)
Q Consensus 2 ~I~~~I~~G~i~~Ai~~i~~~~p 24 (161)
+||.+|..|+..+|+..+=++-|
T Consensus 42 qvr~lL~~g~~~~ALk~aL~~pP 64 (152)
T 3dwl_G 42 QARSAIQTGNALQGLKTLLSYVP 64 (152)
T ss_dssp HHHHHHHHSCCHHHHHHHTSSCC
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC
Confidence 57888888888888888877744
No 17
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=29.57 E-value=16 Score=23.84 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.1
Q ss_pred hHHHHhhhHHHHHHHHhhhccc
Q 031315 98 DISQRLKTASEVNAAILTSQSH 119 (161)
Q Consensus 98 ~~~~r~~la~~vn~aiL~~~~~ 119 (161)
.+++|..+|+.|-.|+..+...
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~ 71 (83)
T 2jpq_A 50 AASQRKLIAEKFAQALMSSLET 71 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999987654
No 18
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=29.43 E-value=25 Score=19.96 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.8
Q ss_pred hcCCHHHHHHHhh
Q 031315 8 QCGNVEDAIEKVN 20 (161)
Q Consensus 8 ~~G~i~~Ai~~i~ 20 (161)
..||++.|++|+-
T Consensus 32 ~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 32 SGGSVQGALDSLL 44 (46)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 3689999999974
No 19
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.42 E-value=25 Score=20.74 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.3
Q ss_pred hcCCHHHHHHHhhcC
Q 031315 8 QCGNVEDAIEKVNDL 22 (161)
Q Consensus 8 ~~G~i~~Ai~~i~~~ 22 (161)
..||++.|++|+-.+
T Consensus 34 ~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 34 TGGDVDAAVEKLRQS 48 (54)
T ss_dssp HTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 379999999998654
No 20
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.38 E-value=25 Score=21.68 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=11.8
Q ss_pred hcCCHHHHHHHhhcC
Q 031315 8 QCGNVEDAIEKVNDL 22 (161)
Q Consensus 8 ~~G~i~~Ai~~i~~~ 22 (161)
..||++.|.+|+=.|
T Consensus 43 t~~NvErAaDWLFSH 57 (63)
T 1wgn_A 43 KGENIEQILDYLFAH 57 (63)
T ss_dssp HCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 368899999998544
No 21
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=29.16 E-value=43 Score=19.56 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=23.2
Q ss_pred hhHHHHhhhHHHHHHHHhhhccccCCC
Q 031315 97 LDISQRLKTASEVNAAILTSQSHEKDP 123 (161)
Q Consensus 97 l~~~~r~~la~~vn~aiL~~~~~~~~~ 123 (161)
.+.+++.++++.+..++....|.+.+.
T Consensus 10 rt~eqK~~L~~~it~~~~~~lg~~~~~ 36 (62)
T 3m20_A 10 LDVGKKREFVERLTSVAAEIYGMDRSA 36 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 467889999999999999999987664
No 22
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=28.75 E-value=27 Score=18.58 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=9.4
Q ss_pred cCCHHHHHHHh
Q 031315 9 CGNVEDAIEKV 19 (161)
Q Consensus 9 ~G~i~~Ai~~i 19 (161)
.||++.|++|+
T Consensus 29 ~~n~e~A~~~L 39 (40)
T 1z96_A 29 NGDLDVAASFL 39 (40)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67899999986
No 23
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=28.42 E-value=63 Score=22.43 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHHHHHHHHcc-chHHHHHHHHHhcCC
Q 031315 39 QQRLIELIRNG-KVEEALEFAQEELAP 64 (161)
Q Consensus 39 ~q~fIElir~~-~~~eAl~yar~~l~~ 64 (161)
.-+.+|.+|.| .+.+.+++|++-+..
T Consensus 60 s~~ilE~aRDG~sVAeLM~~G~~vL~r 86 (120)
T 2fvh_A 60 ADHILEGARDGRTVAELMASGREVLGR 86 (120)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTSSSCG
T ss_pred HHHHHHHhHcCCCHHHHHHHhhhhcCH
Confidence 55778899987 688999999987774
No 24
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=28.39 E-value=29 Score=27.74 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=32.6
Q ss_pred cCCHHHHHHHhhc-----------------------------CCccccccCcchhhhhhHHHHHHHHHc
Q 031315 9 CGNVEDAIEKVND-----------------------------LNPEILDTNPQLFFHLQQQRLIELIRN 48 (161)
Q Consensus 9 ~G~i~~Ai~~i~~-----------------------------~~p~ll~~~~~l~F~L~~q~fIElir~ 48 (161)
+||++.|++|+++ ...-+++-|..-.|.=+--.|+.+++.
T Consensus 30 ~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcETDFVArN~~F~~l~~~ 98 (291)
T 1xb2_B 30 GGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQ 98 (291)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESCHHHHTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEecccceeeCCHHHHHHHHH
Confidence 6999999999997 234455667888999999999999874
No 25
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=27.61 E-value=91 Score=21.07 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=21.3
Q ss_pred HHHHHHHHHcc-chHHHHHHHHHhcCC
Q 031315 39 QQRLIELIRNG-KVEEALEFAQEELAP 64 (161)
Q Consensus 39 ~q~fIElir~~-~~~eAl~yar~~l~~ 64 (161)
+-..+|..|.| .+.+.+++|++-+..
T Consensus 44 s~~v~E~aRdG~sVaelM~~g~~~L~~ 70 (104)
T 4fur_A 44 SAYVLDGAREGKTVEEVMDGARSVLKA 70 (104)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHCCCCHHHHHHHHhhhCCH
Confidence 66788888987 688999999987765
No 26
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=27.09 E-value=39 Score=24.46 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.4
Q ss_pred hhhhhhhcCCHHHHHHHhhcCCc
Q 031315 2 AVKKAVQCGNVEDAIEKVNDLNP 24 (161)
Q Consensus 2 ~I~~~I~~G~i~~Ai~~i~~~~p 24 (161)
+|+.+|..|+..+|+..+=++-|
T Consensus 41 qv~~lL~~g~~~~ALk~~L~~pP 63 (151)
T 1k8k_G 41 EVDSCLRQGNMTAALQAALKNPP 63 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHTSSCC
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC
Confidence 57888888888888888877655
No 27
>4ep8_A Urease subunit gamma; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* 1fwb_A* 1fwc_A* 1fwd_A* 1fwe_A* 1fwf_A* 1fwg_A* 1fwh_A* ...
Probab=26.79 E-value=98 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHcc-chHHHHHHHHHhcCC
Q 031315 39 QQRLIELIRNG-KVEEALEFAQEELAP 64 (161)
Q Consensus 39 ~q~fIElir~~-~~~eAl~yar~~l~~ 64 (161)
+-..+|..|.| .+.+.+++|++-+..
T Consensus 40 s~~v~E~aRdG~sVaelm~~g~~~L~~ 66 (100)
T 4ep8_A 40 SAFIMEGARDGKSVASLMEEGRHVLTR 66 (100)
T ss_dssp HHHHHHHHHHTCCHHHHHHHGGGSCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHhhhcCH
Confidence 66778888887 688999999987764
No 28
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.57 E-value=28 Score=19.96 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=12.8
Q ss_pred cCCHHHHHHHhhcCCc
Q 031315 9 CGNVEDAIEKVNDLNP 24 (161)
Q Consensus 9 ~G~i~~Ai~~i~~~~p 24 (161)
.||++.|++|+-.+-|
T Consensus 33 ~~n~e~A~e~L~~gip 48 (49)
T 1ify_A 33 YNNPHRAVEYLLTGIP 48 (49)
T ss_dssp TSCSHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHhCCC
Confidence 4789999999876655
No 29
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=26.52 E-value=1.4e+02 Score=20.05 Aligned_cols=50 Identities=12% Similarity=-0.130 Sum_probs=25.0
Q ss_pred hhhcCCHHHHHH---HhhcCCccccccCcchhhhhhHHHHHHHHHccchHHHHHHHHHhcC
Q 031315 6 AVQCGNVEDAIE---KVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 63 (161)
Q Consensus 6 ~I~~G~i~~Ai~---~i~~~~p~ll~~~~~l~F~L~~q~fIElir~~~~~eAl~yar~~l~ 63 (161)
++..|++++|.+ ++... | .........-=.-....|+.++|+.+.++-+.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-P-------ATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-T-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCC-h-------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 567899999999 77442 2 11222222222223456777777777765544
No 30
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=25.75 E-value=36 Score=19.75 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.2
Q ss_pred cCCHHHHHHHhhcC
Q 031315 9 CGNVEDAIEKVNDL 22 (161)
Q Consensus 9 ~G~i~~Ai~~i~~~ 22 (161)
.||++.|++|+-.+
T Consensus 38 ~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 38 GGDINAAIERLLGS 51 (52)
T ss_dssp TTCHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhC
Confidence 58899999998543
No 31
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=25.65 E-value=32 Score=28.58 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=17.6
Q ss_pred hhhhhhhcCCHHHHHHHhhcC
Q 031315 2 AVKKAVQCGNVEDAIEKVNDL 22 (161)
Q Consensus 2 ~I~~~I~~G~i~~Ai~~i~~~ 22 (161)
.|+++|+.||++.|+++|=+.
T Consensus 149 ~I~~aLl~Gd~e~AV~~cl~~ 169 (399)
T 2pm7_A 149 TISKNLVSGNIKSAVKNSLEN 169 (399)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHC
Confidence 488999999999999988443
No 32
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=24.82 E-value=37 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.9
Q ss_pred hhhhhhhcCCHHHHHHHhhcCC
Q 031315 2 AVKKAVQCGNVEDAIEKVNDLN 23 (161)
Q Consensus 2 ~I~~~I~~G~i~~Ai~~i~~~~ 23 (161)
.||++|.+|+++.|-+++-..|
T Consensus 169 ~IR~~L~~G~v~~A~~lLGrpy 190 (308)
T 3op1_A 169 RIRQAILDGNVKEAGKLLGAPL 190 (308)
T ss_dssp HHHHHHHHTCHHHHHHHHSSCC
T ss_pred HHHHHHHcCCHHHHHhhcCcce
Confidence 5899999999999999997776
No 33
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.12 E-value=43 Score=18.31 Aligned_cols=14 Identities=21% Similarity=0.057 Sum_probs=11.0
Q ss_pred cCCHHHHHHHhhcC
Q 031315 9 CGNVEDAIEKVNDL 22 (161)
Q Consensus 9 ~G~i~~Ai~~i~~~ 22 (161)
.||++.|++|+-.+
T Consensus 29 ~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 29 NWDLEAATNFLLDS 42 (43)
T ss_dssp TSCHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHcC
Confidence 57899999998543
No 34
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=23.94 E-value=15 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=18.9
Q ss_pred hHHHHhhhHHHHHHHHhhhccc
Q 031315 98 DISQRLKTASEVNAAILTSQSH 119 (161)
Q Consensus 98 ~~~~r~~la~~vn~aiL~~~~~ 119 (161)
.+++|..+|+.|-.|+..+...
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~ 71 (83)
T 2jrx_A 50 APAQRQAIANSFARALQSSINE 71 (83)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999987654
No 35
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.17 E-value=38 Score=20.30 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.1
Q ss_pred hcCCHHHHHHHhhcC
Q 031315 8 QCGNVEDAIEKVNDL 22 (161)
Q Consensus 8 ~~G~i~~Ai~~i~~~ 22 (161)
..||++.|++|+-.+
T Consensus 42 ~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 42 SGGSVQGALDSLLNG 56 (58)
T ss_dssp HTSCHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHhC
Confidence 368999999998654
No 36
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.77 E-value=48 Score=20.95 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.7
Q ss_pred hcCCHHHHHHHhhcCCc
Q 031315 8 QCGNVEDAIEKVNDLNP 24 (161)
Q Consensus 8 ~~G~i~~Ai~~i~~~~p 24 (161)
..||++.|++|+-.+-|
T Consensus 54 t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 54 TDGDIHAAIEMLLGASG 70 (74)
T ss_dssp TTSCHHHHHHHHHTCCC
T ss_pred hCCCHHHHHHHHHhCCC
Confidence 36899999999977654
No 37
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.58 E-value=53 Score=19.25 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=22.4
Q ss_pred hhHHHHhhhHHHHHHHHhhhccccCC
Q 031315 97 LDISQRLKTASEVNAAILTSQSHEKD 122 (161)
Q Consensus 97 l~~~~r~~la~~vn~aiL~~~~~~~~ 122 (161)
.+.+++.++++.+..++....|.|.+
T Consensus 11 rs~eqk~~L~~~it~~~~~~lg~p~~ 36 (65)
T 3ry0_A 11 RSPQEVAALGEALTAAAHETLGTPVE 36 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 36888999999999999999988754
No 38
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=22.23 E-value=1.4e+02 Score=20.09 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=24.4
Q ss_pred hHHHHHHHHHccc---hHHHHHHHHHhcCCCC
Q 031315 38 QQQRLIELIRNGK---VEEALEFAQEELAPRG 66 (161)
Q Consensus 38 ~~q~fIElir~~~---~~eAl~yar~~l~~~~ 66 (161)
+-.+.+||++.+. ---|+.|++..+..+.
T Consensus 54 YErR~mELLKvsk~~~dKRAlKf~KKRlGth~ 85 (104)
T 4a18_Q 54 YEKRIIELIKAGSAKDSKKATKIARKRLGTHR 85 (104)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHH
T ss_pred hHHHHHHHHHcccchhhHHHHHHHHHHhhhHH
Confidence 4567899999998 7899999999988764
No 39
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=21.64 E-value=57 Score=18.38 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.2
Q ss_pred hHHHHhhhHHHHHHHHhhhccccCC
Q 031315 98 DISQRLKTASEVNAAILTSQSHEKD 122 (161)
Q Consensus 98 ~~~~r~~la~~vn~aiL~~~~~~~~ 122 (161)
+.+++.++++.+-.++-...|.|.+
T Consensus 15 s~e~k~~l~~~l~~~l~~~lg~p~~ 39 (63)
T 2x4k_A 15 SDEQLKNLVSEVTDAVEKTTGANRQ 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 6788899999999999998887653
No 40
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=21.43 E-value=50 Score=20.15 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.2
Q ss_pred hhHHHHhhhHHHHHHHHhhhccccCCC
Q 031315 97 LDISQRLKTASEVNAAILTSQSHEKDP 123 (161)
Q Consensus 97 l~~~~r~~la~~vn~aiL~~~~~~~~~ 123 (161)
++.+++.++++.+..++-+..|.+.+.
T Consensus 12 ls~eqk~~L~~~l~~~l~~~lgip~~~ 38 (76)
T 1gyx_A 12 LDEQQKAALAADITDVIIRHLNSKDSS 38 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCCce
Confidence 478899999999999999999987653
No 41
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.92 E-value=4e+02 Score=23.23 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=30.6
Q ss_pred hhhhhhcCCHHHHHHHhhcCC--ccccccCcchhhhhhHHHHHHHHHcc
Q 031315 3 VKKAVQCGNVEDAIEKVNDLN--PEILDTNPQLFFHLQQQRLIELIRNG 49 (161)
Q Consensus 3 I~~~I~~G~i~~Ai~~i~~~~--p~ll~~~~~l~F~L~~q~fIElir~~ 49 (161)
|-++|+.|-.+.|+..+.... +.|- ....-.|.+. +.++.++++-
T Consensus 249 v~~LvLRGl~~qA~~~L~~s~~~~~L~-~~~~~~~~~i-~dli~LL~~y 295 (570)
T 3f3f_C 249 LNQLVLRGLLSQAIGCIERSDLLPYLS-DTCAVSFDAV-SDSIELLKQY 295 (570)
T ss_dssp HHHHHHTTCHHHHHHHHTTTTTTHHHH-HSCHHHHHHH-HHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHhcccchhhc-ccChHHHHHH-HHHHHHHHhC
Confidence 567899999999999998442 3333 3344445543 6788888764
No 42
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A*
Probab=20.92 E-value=1.2e+02 Score=23.41 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.7
Q ss_pred HHHHHHHHHccc--hHHHHHHHHHhcCC
Q 031315 39 QQRLIELIRNGK--VEEALEFAQEELAP 64 (161)
Q Consensus 39 ~q~fIElir~~~--~~eAl~yar~~l~~ 64 (161)
.-+.+|.+|.|. +.+.+.+|++.|..
T Consensus 40 ~~~ilE~aRdG~~sVaelM~~g~~~L~r 67 (238)
T 1e9y_A 40 SAHIMEEARAGKKTAAELMQEGRTLLKP 67 (238)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHGGGSCCT
T ss_pred HHHHHHHHhcCCCcHHHHHHHhhhhcCH
Confidence 567899999986 99999999988875
No 43
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=20.86 E-value=58 Score=20.76 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.2
Q ss_pred hHHHHhhhHHHHHHHHhhhc
Q 031315 98 DISQRLKTASEVNAAILTSQ 117 (161)
Q Consensus 98 ~~~~r~~la~~vn~aiL~~~ 117 (161)
.+++|..+|+.|-.|+....
T Consensus 49 ~~~qR~~iAe~Fa~AL~~Sv 68 (76)
T 2jr2_A 49 PESKRVAVVDNFTKALKQSV 68 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999987653
No 44
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=20.47 E-value=39 Score=25.53 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=32.6
Q ss_pred cCCHHHHHHHhhcC---------------------------CccccccCcchhhhhhHHHHHHHHHccchHHHHHHHH
Q 031315 9 CGNVEDAIEKVNDL---------------------------NPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 59 (161)
Q Consensus 9 ~G~i~~Ai~~i~~~---------------------------~p~ll~~~~~l~F~L~~q~fIElir~~~~~eAl~yar 59 (161)
+||++.|++|+++. ..-+++-|..-.|.-+--.|.++.+ +-|++-|-
T Consensus 29 ~GD~ekAie~LR~kG~akAaKka~R~aaEGlV~~~i~~~~~~gvlvEvNcETDFVArn~~F~~lak----diAMhiAA 102 (196)
T 1aip_C 29 GWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAK----DLAMHIAM 102 (196)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSSHHHHTSHHHHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCchhhHhccccccCCeEEEEEecCCCEEEEEEEecCCccccCCHHHHHHHH----HHHHHHHH
Confidence 69999999999753 2233444677788888888888854 34555544
No 45
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=20.19 E-value=64 Score=18.29 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=21.0
Q ss_pred hHHHHhhhHHHHHHHHhhhccccCC
Q 031315 98 DISQRLKTASEVNAAILTSQSHEKD 122 (161)
Q Consensus 98 ~~~~r~~la~~vn~aiL~~~~~~~~ 122 (161)
+.+++.++++.+..++-...|.+.+
T Consensus 12 s~e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 12 TDEQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 6788899999999999988887653
No 46
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=20.09 E-value=67 Score=22.73 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=23.8
Q ss_pred hhhHHHHhhhHHHHHHHHhhhccccCC
Q 031315 96 LLDISQRLKTASEVNAAILTSQSHEKD 122 (161)
Q Consensus 96 Ll~~~~r~~la~~vn~aiL~~~~~~~~ 122 (161)
-++++++.++++.|.+++....|.|.+
T Consensus 11 ~~t~eqK~aLa~~It~a~~e~~~vP~~ 37 (149)
T 3mf7_A 11 RLTPSAKHAVAKAITDAHRGLTGTQHF 37 (149)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTCCTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcChH
Confidence 357899999999999999999988764
Done!