Query 031317
Match_columns 161
No_of_seqs 104 out of 734
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w63_Q Adapter-related protein 100.0 4E-46 1.4E-50 286.5 20.4 146 1-146 1-146 (158)
2 2vgl_S AP-2 complex subunit si 100.0 4.6E-45 1.6E-49 275.6 20.1 141 1-141 1-141 (142)
3 3tjz_C Coatomer subunit zeta-1 100.0 1.8E-45 6.3E-50 282.0 17.7 135 1-138 12-149 (153)
4 2vgl_M AP-2 complex subunit MU 100.0 2.6E-35 9E-40 256.6 15.5 134 1-137 1-135 (435)
5 1w63_M Adaptor-related protein 100.0 2.5E-35 8.6E-40 255.9 8.0 136 1-139 2-139 (423)
6 2nut_C Vesicle-trafficking pro 96.9 0.019 6.4E-07 44.3 12.5 96 1-97 2-102 (196)
7 4b93_A Vesicle-associated memb 95.5 0.076 2.6E-06 40.8 8.6 84 10-97 10-93 (189)
8 3bw6_A Synaptobrevin homolog Y 95.4 0.48 1.6E-05 34.7 12.5 95 2-97 7-111 (144)
9 2vx8_A Nucleoporin-like protei 95.4 0.11 3.8E-06 39.5 9.0 84 10-97 52-135 (169)
10 3kyq_A YKT6, synaptobrevin hom 94.8 0.9 3.1E-05 35.2 12.9 95 2-97 4-108 (199)
11 3cpt_A Mitogen-activated prote 94.8 0.66 2.3E-05 34.5 11.4 92 2-93 38-135 (143)
12 4afi_A AP-3 complex subunit de 94.7 0.62 2.1E-05 35.4 11.6 80 10-97 62-145 (173)
13 2j3t_C Trafficking protein par 94.1 0.71 2.4E-05 33.9 10.6 92 1-94 2-108 (145)
14 3cue_C Transport protein parti 87.3 2.3 7.8E-05 31.7 7.3 92 1-94 2-114 (159)
15 3cue_A Transport protein parti 84.0 14 0.00048 29.1 13.7 36 1-36 2-41 (219)
16 2j3w_A Sedlin, trafficking pro 82.0 12 0.00041 26.9 12.8 94 2-97 6-114 (142)
17 2fh5_A Signal recognition part 77.9 13 0.00045 28.5 8.3 92 1-97 10-105 (185)
18 1nrj_A Signal recognition part 75.1 15 0.0005 27.4 7.5 73 1-73 1-93 (158)
19 3vjz_A DMP19, putative unchara 62.6 3.9 0.00013 31.0 2.2 45 80-124 16-66 (166)
20 2wl8_A Peroxisomal biogenesis 46.0 34 0.0012 24.6 4.8 44 81-124 65-108 (126)
21 1vet_B P14, late endosomal/lys 32.7 1.2E+02 0.0043 21.0 13.4 94 2-95 19-119 (125)
22 3sbc_A Peroxiredoxin TSA1; alp 23.8 1.3E+02 0.0043 23.2 5.1 33 3-35 144-179 (216)
No 1
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=4e-46 Score=286.50 Aligned_cols=146 Identities=60% Similarity=1.097 Sum_probs=140.5
Q ss_pred CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHH
Q 031317 1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEI 80 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i 80 (161)
||+|+||+|++|++|++|||++.+.++|+++++.+++++.+|++++|||+++++++++|+++++|||+++++.++|||++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 99999999999999999999999998899999999999988877789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhhHHhhh
Q 031317 81 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAK 146 (161)
Q Consensus 81 ~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~~~~~~ 146 (161)
++|||+++++|++|||++||++|++||++||++||||+|+|+|++|+++.|++++..++.+.++..
T Consensus 81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~~~~~ 146 (158)
T 1w63_Q 81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDE 146 (158)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999998876543
No 2
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=4.6e-45 Score=275.56 Aligned_cols=141 Identities=49% Similarity=0.973 Sum_probs=135.4
Q ss_pred CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHH
Q 031317 1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEI 80 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i 80 (161)
||+|++|+|++|+++++|||++++..+++++++.+++.+.++++++|||+++++++++|+++++|||+++++.++|||++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 99999999999999999999998888888999999999888777799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhhhh
Q 031317 81 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 141 (161)
Q Consensus 81 ~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~~~ 141 (161)
++|||+++++|++|||++||++|++||++||++||||+|+|+|++|++..+++++..++++
T Consensus 81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~ 141 (142)
T 2vgl_S 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141 (142)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999988899999988764
No 3
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=1.8e-45 Score=282.02 Aligned_cols=135 Identities=22% Similarity=0.377 Sum_probs=126.4
Q ss_pred CeEEEEEEcCCCCeEEEecCCC--CCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHH
Q 031317 1 MIHFVLLISRQGKVRLTKWYSP--YTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNEL 78 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~--~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel 78 (161)
||+|++|+|++|++|++|||++ ++.++|+++++++|+++ +|++ +|++.++|++++||||++|||++++++|+||+
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~-~r~~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTD--SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHH-SSCC--CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCC--CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 8999999999999999999998 57788889999999997 4433 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-cccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhh
Q 031317 79 EILEIIHHYVEILDRYF-GSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQ 138 (161)
Q Consensus 79 ~i~efL~~~ve~L~~yf-g~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~ 138 (161)
++++|||+++++|++|| |++||++|++||++||++||||+|+|+|||||++.|+++++..
T Consensus 89 ~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~ 149 (153)
T 3tjz_C 89 MLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALR 149 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcc
Confidence 99999999999999999 8999999999999999999999999999999999999998764
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=2.6e-35 Score=256.56 Aligned_cols=134 Identities=18% Similarity=0.301 Sum_probs=118.9
Q ss_pred CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhcc-CCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHH
Q 031317 1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTR-GPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELE 79 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r-~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~ 79 (161)
||+|+||+|++|+++++|||++...+ ...+.+++.+.++ +..+||++++++++++|+++++|||+++++.|+|||+
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 77 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGR---NAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM 77 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCH---HHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCCh---hHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 99999999999999999999984332 2244555666553 3468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHh
Q 031317 80 ILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAA 137 (161)
Q Consensus 80 i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~ 137 (161)
++||||+++++|++|||++||++|++||++||++||||+|+|+|++|+++.|..++..
T Consensus 78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~ 135 (435)
T 2vgl_M 78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQ 135 (435)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999966555443
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.5e-35 Score=255.89 Aligned_cols=136 Identities=17% Similarity=0.300 Sum_probs=121.8
Q ss_pred CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHhcc-C-CCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHH
Q 031317 1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTR-G-PKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNEL 78 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r-~-~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel 78 (161)
||+|++|+|++|+++++|||++...+ ...+.+++.+.++ + ..+||++++++++++|+++++|||+++++.|+|||
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l 78 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDM---SEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVS 78 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTT---TTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCCh---HHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence 89999999999999999999984332 2345556666554 2 45899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEeeecCHHHHHHHHHhhh
Q 031317 79 EILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQD 139 (161)
Q Consensus 79 ~i~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~eT~~~~i~~~i~~~~ 139 (161)
+++||||+++++|++|||++||++|++||++||++||||+|+|+|++|+++.|++++....
T Consensus 79 ~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~ 139 (423)
T 1w63_M 79 LVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEG 139 (423)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999999999999998888877643
No 6
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.95 E-value=0.019 Score=44.32 Aligned_cols=96 Identities=9% Similarity=0.122 Sum_probs=66.8
Q ss_pred CeEEEEEEcCCCCeEEEecCCCCC-----HHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCC
Q 031317 1 MIHFVLLISRQGKVRLTKWYSPYT-----QKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQED 75 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~~~-----~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~ne 75 (161)
||..-+|.-...-+.|+.++...+ ..+-+.+...+.+++....+... .+..+++.+.|...+++.++++++.+-
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~-s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRC-TLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEE-EEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 666666654433566677766321 12233455555555533223333 346799999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcc
Q 031317 76 NELEILEIIHHYVEILDRYFGS 97 (161)
Q Consensus 76 Nel~i~efL~~~ve~L~~yfg~ 97 (161)
+.-..+.||..+.+-+..-+|.
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999888876664
No 7
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=95.48 E-value=0.076 Score=40.83 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=60.5
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q 031317 10 RQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVE 89 (161)
Q Consensus 10 ~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~~~ve 89 (161)
.+|.++|+.|=.. +. .-..+...+..++.. ++..+ .+.++++.|.|....++.++++++.+-+.-..+.||..+.+
T Consensus 10 Arg~~iLae~t~~-~g-nf~~ia~~iL~kip~-~~~k~-s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~ 85 (189)
T 4b93_A 10 ARGTTILAKHAWC-GG-NFLEVTEQILAKIPS-ENNKL-TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 85 (189)
T ss_dssp EETTEEEEEEESS-EE-CHHHHHHHHHTTCCS-SSEEE-EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EeCCEEEEeCCCC-CC-CHHHHHHHHHHhCCC-CCCeE-EEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHH
Confidence 4699999997332 11 112334444433321 12222 45789999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 031317 90 ILDRYFGS 97 (161)
Q Consensus 90 ~L~~yfg~ 97 (161)
-+..-+|.
T Consensus 86 eF~~~~~~ 93 (189)
T 4b93_A 86 RFQTTYGS 93 (189)
T ss_dssp HHHHHHGG
T ss_pred HHHhhccc
Confidence 88877765
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=95.44 E-value=0.48 Score=34.72 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=65.1
Q ss_pred eEEEEEEcCCC--CeEEEecCCC--CC---HHHHHHHHHHHHHHHhccCC--CccceEEeCCeEEEEE-EeCcEEEEEEe
Q 031317 2 IHFVLLISRQG--KVRLTKWYSP--YT---QKERSKVIRELSGVILTRGP--KLCNFVEWRGYKVVYK-RYASLYFCMCV 71 (161)
Q Consensus 2 I~al~Iln~~G--~~~l~K~Y~~--~~---~~~~~~~~~~i~~~i~~r~~--~~~~i~~~~~~~~vy~-~~~~L~f~~v~ 71 (161)
|-++.|+-..+ -++|+..++- .+ ....+++...+-+.+..|.. ..+ -++.+++.+.|. +.++|.+++++
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~-sv~~~~y~fH~~~~~~gl~~l~i~ 85 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQ-SIEEGNYIGHVYARSEGICGVLIT 85 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEE-EEEETTEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceE-EEEeCCEEEEEEEecCCEEEEEEE
Confidence 45665554332 4567776653 11 11224455555566665542 233 346799999888 88999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcc
Q 031317 72 DQEDNELEILEIIHHYVEILDRYFGS 97 (161)
Q Consensus 72 ~~neNel~i~efL~~~ve~L~~yfg~ 97 (161)
|.+-+.-..+.||..+.+-+..-+|.
T Consensus 86 D~~yp~rvAF~~L~~i~~eF~~~y~~ 111 (144)
T 3bw6_A 86 DKEYPVRPAYTLLNKILDEYLVAHPK 111 (144)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCCChhHHHHHHHHHHHHHHHHccc
Confidence 99999999999999888888776664
No 9
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=95.37 E-value=0.11 Score=39.48 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=62.1
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHHHhccCCCccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHHHHHH
Q 031317 10 RQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVE 89 (161)
Q Consensus 10 ~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~i~~r~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~~~ve 89 (161)
.+|.++|+.|-.. +. .-+.+.+.+.+++..++ ..+ -+..+++.+-|...++|.|+++++.+-.--..+.||..+.+
T Consensus 52 aRG~~VLae~t~~-~g-nf~~iak~ll~kl~~~~-~r~-s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~ 127 (169)
T 2vx8_A 52 ARGTTILAKHAWC-GG-NFLEVTEQILAKIPSEN-NKL-TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 127 (169)
T ss_dssp EETTEEEEEEESS-CB-SHHHHHHHHHTTSCSSC-EEE-EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EcCCEEEEEeccC-CC-CHHHHHHHHHhhCCCCC-Cce-EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHH
Confidence 4578999986432 11 22344555555543322 223 35679999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 031317 90 ILDRYFGS 97 (161)
Q Consensus 90 ~L~~yfg~ 97 (161)
-+..-+|+
T Consensus 128 eF~~~y~~ 135 (169)
T 2vx8_A 128 RFQTTYGS 135 (169)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhh
Confidence 99888775
No 10
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=94.77 E-value=0.9 Score=35.15 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=66.4
Q ss_pred eEEEEEEcCCCC-e-EEEecCCC-----CCHHHHHHHHHHHHHHHhccCCC--ccceEEeCCeEEE-EEEeCcEEEEEEe
Q 031317 2 IHFVLLISRQGK-V-RLTKWYSP-----YTQKERSKVIRELSGVILTRGPK--LCNFVEWRGYKVV-YKRYASLYFCMCV 71 (161)
Q Consensus 2 I~al~Iln~~G~-~-~l~K~Y~~-----~~~~~~~~~~~~i~~~i~~r~~~--~~~i~~~~~~~~v-y~~~~~L~f~~v~ 71 (161)
|-++.|+-..|+ + +|+.-|+- ......+.+...+-+.+..|... .+ .+..+++.+. |.+.+++.+++++
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~-s~~~~~y~fH~y~~~~gl~yl~it 82 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRA-SVKEQEYLCHVYVRSDSLAGVVIA 82 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEE-EEECSSEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeE-EEEeCCEEEEEEEecCCEEEEEEE
Confidence 557777765544 3 45555542 22333344444444556666432 22 3467899997 9999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcc
Q 031317 72 DQEDNELEILEIIHHYVEILDRYFGS 97 (161)
Q Consensus 72 ~~neNel~i~efL~~~ve~L~~yfg~ 97 (161)
+.+-+.-..+.||..+.+-+..-+|.
T Consensus 83 d~~yp~r~AF~fL~ei~~eF~~~~~~ 108 (199)
T 3kyq_A 83 DSEYPSRVAFTLLEKVLDEFSKQVDR 108 (199)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999888887763
No 11
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=94.76 E-value=0.66 Score=34.47 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=66.5
Q ss_pred eEEEEEEcCCCCeEEEecCCC-CCHHHHHHHHHHHHH---HHhcc--CCCccceEEeCCeEEEEEEeCcEEEEEEecCCC
Q 031317 2 IHFVLLISRQGKVRLTKWYSP-YTQKERSKVIRELSG---VILTR--GPKLCNFVEWRGYKVVYKRYASLYFCMCVDQED 75 (161)
Q Consensus 2 I~al~Iln~~G~~~l~K~Y~~-~~~~~~~~~~~~i~~---~i~~r--~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~ne 75 (161)
+.+++|-|++|=+++.-.... +...-++.+...+-. +..+- ..+..-+..++++.+|+.....+++..++.++.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 579999999999999888765 333345556665421 12221 123455667899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 031317 76 NELEILEIIHHYVEILDR 93 (161)
Q Consensus 76 Nel~i~efL~~~ve~L~~ 93 (161)
|.-+++++=..+...|+.
T Consensus 118 NtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHH
Confidence 999999875555555543
No 12
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=94.71 E-value=0.62 Score=35.40 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=60.2
Q ss_pred CCCCeEEEecCCCC-CHHHHHHHHHHHHHHHhccCC---CccceEEeCCeEEEEEEeCcEEEEEEecCCCCHHHHHHHHH
Q 031317 10 RQGKVRLTKWYSPY-TQKERSKVIRELSGVILTRGP---KLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIH 85 (161)
Q Consensus 10 ~~G~~~l~K~Y~~~-~~~~~~~~~~~i~~~i~~r~~---~~~~i~~~~~~~~vy~~~~~L~f~~v~~~neNel~i~efL~ 85 (161)
.+|.++|+.|=... +- . .+.+.++.+-. ..+ .+..+++.|.|...+++.++++++.+..--..+.||.
T Consensus 62 Arg~tiLAE~t~~~gnf---~----~va~~iL~kip~~~~r~-t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLe 133 (173)
T 4afi_A 62 ARGTTILAKHAWCGGNF---L----EVTEQILAKIPSENNKL-TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLN 133 (173)
T ss_dssp EETTEEEEEEESSCCCH---H----HHHHHHHTTSCSSSEEE-EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHH
T ss_pred ECCCEEEEEccCCCCCH---H----HHHHHHHHhCCCCCCeE-EEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHH
Confidence 46889999875431 21 1 33444444322 123 4468999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 031317 86 HYVEILDRYFGS 97 (161)
Q Consensus 86 ~~ve~L~~yfg~ 97 (161)
.+.+-+..-+|+
T Consensus 134 dI~~eF~~~yg~ 145 (173)
T 4afi_A 134 EVKKRFQTTYGS 145 (173)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHhch
Confidence 999999888875
No 13
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=94.14 E-value=0.71 Score=33.91 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=57.0
Q ss_pred CeEEEEEEcCCCCeEEEecCCCC-----CHHHHHHHHHHHHHH----Hhc--cCCCc--cceEEeCCeEE-EEEEeCcEE
Q 031317 1 MIHFVLLISRQGKVRLTKWYSPY-----TQKERSKVIRELSGV----ILT--RGPKL--CNFVEWRGYKV-VYKRYASLY 66 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~~-----~~~~~~~~~~~i~~~----i~~--r~~~~--~~i~~~~~~~~-vy~~~~~L~ 66 (161)
||..++|+|+.|.+++.+-|.+. +..+...+...++.- +.+ ..... -..+..+++++ .|..-.++-
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK 81 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK 81 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence 58899999999999999988642 212222333333211 111 11111 12335677777 567777899
Q ss_pred EEEEecCCCCHHHHHHHHHHHH-HHHHHH
Q 031317 67 FCMCVDQEDNELEILEIIHHYV-EILDRY 94 (161)
Q Consensus 67 f~~v~~~neNel~i~efL~~~v-e~L~~y 94 (161)
|+++++.+++. +-++++.+. ++.-+|
T Consensus 82 Fvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 82 VVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp EEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred EEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 99999988765 456677666 555554
No 14
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=87.25 E-value=2.3 Score=31.71 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=52.9
Q ss_pred CeEEEEEEcCCCCeEEEecCCCC-----------CHHHHHHHHHH-HHHH---HhccC--CCccceE--EeCCeEE-EEE
Q 031317 1 MIHFVLLISRQGKVRLTKWYSPY-----------TQKERSKVIRE-LSGV---ILTRG--PKLCNFV--EWRGYKV-VYK 60 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~~-----------~~~~~~~~~~~-i~~~---i~~r~--~~~~~i~--~~~~~~~-vy~ 60 (161)
||.+++|+|+.|..+..|-|.+. ...+...+... +|.. +.+-+ .....+. ..+.+++ .|.
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~e 81 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYC 81 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEEC
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEE
Confidence 48899999999999999988531 11222222222 2211 11111 1112232 3456666 455
Q ss_pred EeCcEEEEEEecCCCCHHHHHHHHHHHHH-HHHHH
Q 031317 61 RYASLYFCMCVDQEDNELEILEIIHHYVE-ILDRY 94 (161)
Q Consensus 61 ~~~~L~f~~v~~~neNel~i~efL~~~ve-~L~~y 94 (161)
--.++-|++++|..++++ -++|+.+.+ +.-+|
T Consensus 82 T~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y 114 (159)
T 3cue_C 82 TASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY 114 (159)
T ss_dssp CSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred eCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence 567899999999886654 356666665 55554
No 15
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=84.02 E-value=14 Score=29.11 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=25.9
Q ss_pred CeEEEEEEcCCCCeEEEecCCC----CCHHHHHHHHHHHH
Q 031317 1 MIHFVLLISRQGKVRLTKWYSP----YTQKERSKVIRELS 36 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~----~~~~~~~~~~~~i~ 36 (161)
||..++|+|+.|..++.|-|.. .+..+..-+..-+|
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lh 41 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLH 41 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhH
Confidence 5899999999999999998863 34334444444443
No 16
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=81.95 E-value=12 Score=26.92 Aligned_cols=94 Identities=9% Similarity=0.122 Sum_probs=55.6
Q ss_pred eEEEEEEcCCCCeEEEecCCCCCH---HHHHHHHH-H-HH------HHHhccCCCcc---ceEEeCCeEE-EEEEeCcEE
Q 031317 2 IHFVLLISRQGKVRLTKWYSPYTQ---KERSKVIR-E-LS------GVILTRGPKLC---NFVEWRGYKV-VYKRYASLY 66 (161)
Q Consensus 2 I~al~Iln~~G~~~l~K~Y~~~~~---~~~~~~~~-~-i~------~~i~~r~~~~~---~i~~~~~~~~-vy~~~~~L~ 66 (161)
|.++.|+|++|.+++.+-|.+... .+..++.. . ++ ......+ ..+ .+-.++++++ .|..-.++=
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~-~~~~l~~~~~~~~y~v~~~~T~tg~K 84 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS-NNMYLKTVDKFNEWFVSAFVTAGHMR 84 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC-SCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC-CcceeEeeecccceEEEEEEcCCCcE
Confidence 589999999999999998876321 12222332 1 11 1111111 111 1222456656 566777899
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 031317 67 FCMCVDQEDNELEILEIIHHYVEILDRYFGS 97 (161)
Q Consensus 67 f~~v~~~neNel~i~efL~~~ve~L~~yfg~ 97 (161)
|+++++.. ++-.+-.+++.+.++.-+|.-|
T Consensus 85 fvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 85 FIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp EEEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 99999874 4555667777777666655433
No 17
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=77.93 E-value=13 Score=28.48 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=58.4
Q ss_pred CeEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHH-Hhc-cCCCccceEEeCCeEEEEEEeCc--EEEEEEecCCCC
Q 031317 1 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGV-ILT-RGPKLCNFVEWRGYKVVYKRYAS--LYFCMCVDQEDN 76 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~-i~~-r~~~~~~i~~~~~~~~vy~~~~~--L~f~~v~~~neN 76 (161)
|+-.+-|+++.|=++-+ |.+.... ....++.+.+. ++. |. ..+.+.++++++-|+.-++ |.|+++-..--+
T Consensus 10 ~~D~~~IfTkGGvVLWs--~~~~~~~-~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~ 84 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWC--FQGVSDS-CTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILT 84 (185)
T ss_dssp SCSEEEEEETTSBEEEE--EBTTTBS-CCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGG
T ss_pred ceeEEEEEeCCeEEEEe--ecCCccc-ccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEccccc
Confidence 66778899988888866 3332110 11234454444 232 22 2334678999998888664 889999888777
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 031317 77 ELEILEIIHHYVEILDRYFGS 97 (161)
Q Consensus 77 el~i~efL~~~ve~L~~yfg~ 97 (161)
-..+-+||..+...+.+.|++
T Consensus 85 L~YiD~LL~~v~~~Fv~~Y~~ 105 (185)
T 2fh5_A 85 LTYVDKLIDDVHRLFRDKYRT 105 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888777754
No 18
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=75.10 E-value=15 Score=27.40 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=41.4
Q ss_pred CeEEEEEEcCCCCeEEEec--CCCCCHHHHHHHHHHHHHHHhccCCC---------ccceEEe-------CCeEEEEEE-
Q 031317 1 MIHFVLLISRQGKVRLTKW--YSPYTQKERSKVIRELSGVILTRGPK---------LCNFVEW-------RGYKVVYKR- 61 (161)
Q Consensus 1 MI~al~Iln~~G~~~l~K~--Y~~~~~~~~~~~~~~i~~~i~~r~~~---------~~~i~~~-------~~~~~vy~~- 61 (161)
||-.+.|+..+|++++.-- =+..+...-.+++..+...=.++.+. --+++.+ +++++.|.-
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 8999999999999987542 12244333334444443221111111 2245556 788887754
Q ss_pred -eCcEEEEEEecC
Q 031317 62 -YASLYFCMCVDQ 73 (161)
Q Consensus 62 -~~~L~f~~v~~~ 73 (161)
...|||+++-.+
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 567888887744
No 19
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=62.63 E-value=3.9 Score=31.01 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhcccch-----hhHHhhHHHHHHHHH-HHHhCcEee
Q 031317 80 ILEIIHHYVEILDRYFGSVCE-----LDLIFNFHKAYYILD-EILIAGELQ 124 (161)
Q Consensus 80 i~efL~~~ve~L~~yfg~v~E-----~~i~~Nf~~vy~lLD-Emid~G~~~ 124 (161)
--+||+.|++.....+|.+++ .+--.+.-+.|..|| |+++||++|
T Consensus 16 ~d~fl~~~~da~~~~i~~l~~e~m~~Ls~~Q~tLLAy~~L~~EV~~GGFvQ 66 (166)
T 3vjz_A 16 PSALLYTLVSAYLEHTAQTGDESLSCLSDDQHTLTAFCYLDSQVEEGGFVQ 66 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHcCHHHHHHHHHHHHHHHHHcCChHh
Confidence 346788888887777775543 334456667777665 777999876
No 20
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=46.00 E-value=34 Score=24.55 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHhhHHHHHHHHHHHHhCcEee
Q 031317 81 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQ 124 (161)
Q Consensus 81 ~efL~~~ve~L~~yfg~v~E~~i~~Nf~~vy~lLDEmid~G~~~ 124 (161)
++++.++++.++.=--+=++..-+.+|..|..++.+|=+.|.|-
T Consensus 65 ~~lv~~I~~~fE~~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 65 HSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHcCCCc
Confidence 45666666666641101112233478999999999999999874
No 21
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=32.73 E-value=1.2e+02 Score=21.00 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=62.9
Q ss_pred eEEEEEEcCCCCeEEEecCCCCCHHHHHHHHHHHHHH---Hhcc----CCCccceEEeCCeEEEEEEeCcEEEEEEecCC
Q 031317 2 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGV---ILTR----GPKLCNFVEWRGYKVVYKRYASLYFCMCVDQE 74 (161)
Q Consensus 2 I~al~Iln~~G~~~l~K~Y~~~~~~~~~~~~~~i~~~---i~~r----~~~~~~i~~~~~~~~vy~~~~~L~f~~v~~~n 74 (161)
+++.++++.+|-++-+--......+.--++...+|.. .... .+-+.-+++.++-+++-..-.+.++++.++++
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 5678999999999887765444443334566666532 2221 11233466666555544444899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 031317 75 DNELEILEIIHHYVEILDRYF 95 (161)
Q Consensus 75 eNel~i~efL~~~ve~L~~yf 95 (161)
.+.-++.-=++++++-|..=+
T Consensus 99 a~lGlv~~~m~~lv~~L~~~l 119 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYLEEPL 119 (125)
T ss_dssp SCHHHHHHHHHHHHHHHHCC-
T ss_pred CChHHHHHHHHHHHHHHhhhh
Confidence 999998888888887666443
No 22
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=23.80 E-value=1.3e+02 Score=23.15 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCeEEEecCCC---CCHHHHHHHHHHH
Q 031317 3 HFVLLISRQGKVRLTKWYSP---YTQKERSKVIREL 35 (161)
Q Consensus 3 ~al~Iln~~G~~~l~K~Y~~---~~~~~~~~~~~~i 35 (161)
.++||+|.+|.++..-+|.. .+..|-.+..+.+
T Consensus 144 R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al 179 (216)
T 3sbc_A 144 RGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF 179 (216)
T ss_dssp EEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 68999999999999888764 3444444444443
Done!