Query 031319
Match_columns 161
No_of_seqs 144 out of 1120
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 12:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0427 Ubiquitin conjugating 100.0 5.9E-48 1.3E-52 272.4 15.2 161 1-161 1-161 (161)
2 COG5078 Ubiquitin-protein liga 100.0 3E-46 6.6E-51 275.2 13.1 129 15-145 5-135 (153)
3 KOG0417 Ubiquitin-protein liga 100.0 7.8E-46 1.7E-50 268.0 9.4 122 16-139 2-124 (148)
4 KOG0419 Ubiquitin-protein liga 100.0 9.9E-45 2.1E-49 256.1 11.4 127 12-140 1-128 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 1E-42 2.2E-47 258.3 11.5 124 16-141 3-127 (152)
6 PLN00172 ubiquitin conjugating 100.0 4.2E-41 9.1E-46 248.5 15.7 124 16-141 2-126 (147)
7 KOG0425 Ubiquitin-protein liga 100.0 1.4E-39 3E-44 236.1 14.2 128 15-144 5-147 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 6.1E-40 1.3E-44 234.8 11.2 138 12-151 1-146 (158)
9 KOG0418 Ubiquitin-protein liga 100.0 6.4E-39 1.4E-43 238.9 10.6 124 12-138 1-129 (200)
10 KOG0421 Ubiquitin-protein liga 100.0 2.8E-38 6.1E-43 226.4 10.8 124 13-138 27-151 (175)
11 PF00179 UQ_con: Ubiquitin-con 100.0 1.1E-37 2.4E-42 228.2 12.6 125 19-145 1-128 (140)
12 KOG0426 Ubiquitin-protein liga 100.0 2.4E-37 5.3E-42 218.8 12.3 128 12-141 1-143 (165)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 2.2E-36 4.8E-41 221.6 14.8 124 18-143 2-127 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 2.9E-35 6.4E-40 216.6 14.7 126 18-145 1-129 (145)
15 KOG0422 Ubiquitin-protein liga 100.0 7E-34 1.5E-38 202.7 11.8 121 15-138 2-125 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 1.3E-34 2.8E-39 213.1 7.6 136 4-142 17-155 (184)
17 KOG0416 Ubiquitin-protein liga 100.0 6E-32 1.3E-36 198.7 5.3 120 17-140 5-126 (189)
18 KOG0423 Ubiquitin-protein liga 100.0 6.7E-31 1.4E-35 193.7 5.8 128 8-137 3-131 (223)
19 KOG0894 Ubiquitin-protein liga 100.0 2E-28 4.3E-33 186.3 13.5 112 12-127 2-118 (244)
20 KOG0428 Non-canonical ubiquiti 99.9 2.4E-22 5.3E-27 155.8 10.8 117 9-129 5-125 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 2.4E-19 5.3E-24 161.3 7.3 140 15-159 851-1000(1101)
22 KOG0429 Ubiquitin-conjugating 99.7 3.2E-17 7E-22 125.6 9.9 110 17-129 21-135 (258)
23 KOG0895 Ubiquitin-conjugating 99.7 2.4E-16 5.2E-21 142.2 12.5 120 8-127 275-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.4 1.1E-12 2.3E-17 93.7 7.4 115 18-133 8-130 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 2.8E-09 6.2E-14 74.2 3.2 74 63-136 13-88 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 8.4E-08 1.8E-12 69.6 6.3 68 59-126 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.4 7.9E-07 1.7E-11 63.6 6.1 82 42-128 31-119 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.3 6.8E-07 1.5E-11 64.8 4.3 100 14-118 23-136 (161)
29 KOG2391 Vacuolar sorting prote 97.9 0.00016 3.5E-09 59.5 9.9 82 42-129 51-140 (365)
30 KOG3357 Uncharacterized conser 97.7 9.9E-05 2.1E-09 52.9 5.0 100 13-117 25-138 (167)
31 PF14462 Prok-E2_E: Prokaryoti 96.5 0.035 7.5E-07 39.7 8.9 89 33-126 12-121 (122)
32 PF05773 RWD: RWD domain; Int 95.8 0.033 7.1E-07 38.1 5.6 68 18-85 4-73 (113)
33 smart00591 RWD domain in RING 94.5 0.28 6.2E-06 33.1 7.2 27 59-85 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 93.3 0.14 3E-06 38.4 4.2 63 64-126 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 90.8 0.74 1.6E-05 37.7 6.0 90 14-126 98-188 (291)
36 KOG4018 Uncharacterized conser 84.8 3.4 7.4E-05 32.3 5.9 29 62-90 50-78 (215)
37 KOG0309 Conserved WD40 repeat- 83.0 6.6 0.00014 36.4 7.7 66 18-85 423-491 (1081)
38 PF06113 BRE: Brain and reprod 67.2 7.4 0.00016 32.5 3.6 26 62-89 307-332 (333)
39 PF06113 BRE: Brain and reprod 66.1 21 0.00046 29.9 6.0 61 57-123 61-123 (333)
40 PF14460 Prok-E2_D: Prokaryoti 65.4 11 0.00025 28.3 4.1 34 90-126 98-131 (175)
41 cd00421 intradiol_dioxygenase 62.2 13 0.00028 27.1 3.8 25 60-84 65-90 (146)
42 cd03457 intradiol_dioxygenase_ 61.0 13 0.00029 28.4 3.8 26 59-84 85-110 (188)
43 TIGR03737 PRTRC_B PRTRC system 57.5 21 0.00045 28.3 4.4 54 90-147 139-203 (228)
44 smart00340 HALZ homeobox assoc 57.0 9.7 0.00021 22.0 1.8 14 17-30 21-34 (44)
45 cd03459 3,4-PCD Protocatechuat 52.2 24 0.00051 26.2 3.8 25 60-84 72-101 (158)
46 PF14455 Metal_CEHH: Predicted 43.2 1.4E+02 0.003 22.4 7.6 107 22-134 12-130 (177)
47 TIGR02423 protocat_alph protoc 41.3 40 0.00088 25.9 3.6 25 60-84 96-125 (193)
48 KOG4445 Uncharacterized conser 40.0 39 0.00086 28.0 3.5 27 60-86 44-70 (368)
49 cd03463 3,4-PCD_alpha Protocat 38.5 49 0.0011 25.3 3.7 24 61-84 93-121 (185)
50 PF13950 Epimerase_Csub: UDP-g 35.6 28 0.0006 21.6 1.6 21 106-126 37-57 (62)
51 cd05845 Ig2_L1-CAM_like Second 35.5 1.1E+02 0.0023 20.7 4.6 26 58-85 16-41 (95)
52 KOG0177 20S proteasome, regula 33.8 16 0.00035 28.1 0.4 32 95-126 135-166 (200)
53 PF03366 YEATS: YEATS family; 32.2 1.5E+02 0.0032 19.5 5.6 40 44-85 2-41 (84)
54 KOG1047 Bifunctional leukotrie 31.8 46 0.001 29.9 2.9 29 57-86 249-280 (613)
55 PF00845 Gemini_BL1: Geminivir 30.7 1E+02 0.0022 24.8 4.4 44 44-88 103-154 (276)
56 TIGR02439 catechol_proteo cate 27.5 88 0.0019 25.6 3.7 25 60-84 180-222 (285)
57 cd03461 1,2-HQD Hydroxyquinol 24.8 1.1E+02 0.0023 25.0 3.7 25 60-84 172-214 (277)
58 cd03464 3,4-PCD_beta Protocate 24.4 1.1E+02 0.0024 24.0 3.6 25 60-84 122-153 (220)
59 PF12065 DUF3545: Protein of u 24.3 53 0.0012 20.4 1.4 13 17-29 36-48 (59)
60 TIGR02438 catachol_actin catec 24.3 1.1E+02 0.0025 25.0 3.7 25 60-84 184-226 (281)
61 cd03460 1,2-CTD Catechol 1,2 d 23.5 1.2E+02 0.0025 24.9 3.7 25 60-84 176-218 (282)
62 TIGR02422 protocat_beta protoc 23.0 1.2E+02 0.0027 23.8 3.6 25 60-84 117-148 (220)
63 PF09606 Med15: ARC105 or Med1 22.6 29 0.00062 32.6 0.0 24 61-84 714-737 (799)
64 PF04881 Adeno_GP19K: Adenovir 21.5 1.4E+02 0.003 21.7 3.3 31 39-69 43-74 (139)
65 PF14135 DUF4302: Domain of un 21.1 3E+02 0.0065 21.5 5.5 72 15-96 9-103 (235)
66 TIGR02465 chlorocat_1_2 chloro 20.4 1.5E+02 0.0034 23.7 3.8 25 60-84 150-192 (246)
67 PF11745 DUF3304: Protein of u 20.2 51 0.0011 23.1 0.9 21 94-114 49-69 (118)
68 PF08203 RNA_polI_A14: Yeast R 20.1 58 0.0013 21.3 1.1 13 15-27 59-71 (76)
No 1
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-48 Score=272.40 Aligned_cols=161 Identities=87% Similarity=1.448 Sum_probs=158.1
Q ss_pred CCCCCcccccccCHHHHHHHHHHHHHHhhCCCCCcEEeecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeE
Q 031319 1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80 (161)
Q Consensus 1 m~s~~a~~~~~~~~~a~~RL~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v 80 (161)
|+||+|.+...++..+.+||+|||.+++.+++.|+.+...+|+..|.+.+.|.+||.|+|-+|.+.+.||+.||++.|.|
T Consensus 1 mtss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqV 80 (161)
T KOG0427|consen 1 MTSSSAPSRKALSKIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQV 80 (161)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcCccccCCCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHHHhhCCCCCCcceeEeeCCC
Q 031319 81 IFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWWFHDDK 160 (161)
Q Consensus 81 ~f~tp~i~HPnI~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (161)
.|..|...||+|+.+|.||+++|.++|+|++++.+|.++|.++|.+......|.|.+.|.|+|++|++|.+++||||||+
T Consensus 81 mF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~~Yvk~C~~grsPk~TrWwfHDD~ 160 (161)
T KOG0427|consen 81 MFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDK 160 (161)
T ss_pred EEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCccchhhhhccCCCCcccceeeeccCC
Confidence 99998779999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred C
Q 031319 161 V 161 (161)
Q Consensus 161 ~ 161 (161)
|
T Consensus 161 v 161 (161)
T KOG0427|consen 161 V 161 (161)
T ss_pred C
Confidence 7
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-46 Score=275.21 Aligned_cols=129 Identities=36% Similarity=0.691 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCcEEe-ecC-CceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccc
Q 031319 15 IASNRLQKELVEWQVNPPAGFKHK-VTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (161)
Q Consensus 15 ~a~~RL~~El~~l~~~~~~~~~~~-~~~-~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI 92 (161)
.|.+||++|+++|++++..++++. .++ |+++|.++|.||++||||||.|++.|.||++||++||+|+|.| +||||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t-~i~HPNV 83 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTT-KIFHPNV 83 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecc-CCcCCCc
Confidence 389999999999999999999987 444 9999999999999999999999999999999999999999999 5999999
Q ss_pred cCCCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHHHhhC
Q 031319 93 YSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 145 (161)
Q Consensus 93 ~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~~~~~ 145 (161)
+++|+||+++|.++|+|+++|++||.+|+++|.+ ||.++|+|.+|.....+.
T Consensus 84 ~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~-PN~~~Pln~daa~~~~~d 135 (153)
T COG5078 84 DPSGNVCLDILKDRWSPVYTLETILLSLQSLLLS-PNPDSPLNTEAATLYRED 135 (153)
T ss_pred CCCCCChhHHHhCCCCccccHHHHHHHHHHHHcC-CCCCCCCChHHHHHHHhC
Confidence 9999999999999999999999999999999999 999999998886654443
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-46 Score=268.00 Aligned_cols=122 Identities=46% Similarity=0.773 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccC
Q 031319 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (161)
Q Consensus 16 a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~ 94 (161)
+.+||.||++++.+.+++||++. .++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.| +||||||+.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~T-kIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLT-KIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeec-ccccCCcCc
Confidence 45699999999999999999997 6899999999999999999999999999999999999999999999 599999999
Q ss_pred CCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHH
Q 031319 95 NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRY 139 (161)
Q Consensus 95 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~ 139 (161)
.|.||+|+|.++|+|+++|..||.+|++||.+ |++++|++.++.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~-PnpddPL~~~ia 124 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSD-PNPDDPLVPDIA 124 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcC-CCCCccccHHHH
Confidence 99999999999999999999999999999999 999999976653
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-45 Score=256.06 Aligned_cols=127 Identities=35% Similarity=0.690 Sum_probs=121.9
Q ss_pred cCHHHHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCc
Q 031319 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (161)
Q Consensus 12 ~~~~a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HP 90 (161)
|+..|.+||++|++.++++++.||+.. .++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+ ++|||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs-~mFHP 79 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS-KMFHP 79 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee-eccCC
Confidence 567889999999999999999999986 7899999999999999999999999999999999999999999999 79999
Q ss_pred cccCCCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHH
Q 031319 91 HIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYV 140 (161)
Q Consensus 91 nI~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~ 140 (161)
||+++|.+|+|+|...|+|.|++.+||.+||+||.+ |+..+|+|.+|..
T Consensus 80 Nvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~d-Pn~~sPaN~eAA~ 128 (152)
T KOG0419|consen 80 NVYADGSICLDILQNRWSPTYDVASILTSIQSLLND-PNPNSPANSEAAR 128 (152)
T ss_pred CcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcC-CCCCCcccHHHHH
Confidence 999999999999999999999999999999999999 9999999988753
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1e-42 Score=258.30 Aligned_cols=124 Identities=38% Similarity=0.666 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccC
Q 031319 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (161)
Q Consensus 16 a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~ 94 (161)
+.+||++|+++|+++++.|+.+. .++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.| +||||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t-~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLT-KIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEec-CCeeceECC
Confidence 57999999999999999999986 6789999999999999999999999999999999999999999999 599999999
Q ss_pred CCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHH
Q 031319 95 NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVK 141 (161)
Q Consensus 95 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~ 141 (161)
+|.||+++|.++|+|++||++||++|+++|.+ |+.++|+|.++...
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~-P~~~~pln~~aa~~ 127 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSA-PEPDDPLDTSVADH 127 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhC-CCCCCchHHHHHHH
Confidence 99999999999999999999999999999999 99999998776543
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.2e-41 Score=248.46 Aligned_cols=124 Identities=40% Similarity=0.657 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccC
Q 031319 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS 94 (161)
Q Consensus 16 a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~ 94 (161)
|.+||++|+++|+++++.++++. .++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.| +||||||+.
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTT-KIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEec-CcccceECC
Confidence 46899999999999999999886 6789999999999999999999999999999999999999999999 599999999
Q ss_pred CCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHH
Q 031319 95 NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVK 141 (161)
Q Consensus 95 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~ 141 (161)
+|.||+++|.++|+|+++|++||.+|+++|.+ |+.++|+|.++...
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~-P~~~~p~n~~aa~~ 126 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTD-PNPDDPLVPEIARV 126 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhC-CCCCCchHHHHHHH
Confidence 99999999999999999999999999999999 99999998776543
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=236.10 Aligned_cols=128 Identities=34% Similarity=0.636 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCcEEe--ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccc
Q 031319 15 IASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (161)
Q Consensus 15 ~a~~RL~~El~~l~~~~~~~~~~~--~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI 92 (161)
++..-|+++|++|++++..|+.+. +++|++.|.|.|+||++|.|+||.|+..+.||.+||.+||+++|.| .||||||
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s-~mwHPNv 83 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS-KMWHPNV 83 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh-hhcCCCc
Confidence 377889999999999999999986 5679999999999999999999999999999999999999999999 7999999
Q ss_pred cCCCeeeeccCC-------------CCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHHHhh
Q 031319 93 YSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCR 144 (161)
Q Consensus 93 ~~~G~iCl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~~~~ 144 (161)
+++|.+|+++|- +.|.|.+|+++||++|.+||.+ ||.+.|+|.+|++....
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~-PN~~SPANVDAa~~~Re 147 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNS-PNDESPANVDAAKEWRE 147 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcC-CCCCCccchHHHHHHhh
Confidence 999999999994 3799999999999999999999 99999999999765443
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-40 Score=234.85 Aligned_cols=138 Identities=34% Similarity=0.723 Sum_probs=126.4
Q ss_pred cCHHHHHHHHHHHHHHhhCCCCCcEEee------cCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCC
Q 031319 12 LSKIASNRLQKELVEWQVNPPAGFKHKV------TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (161)
Q Consensus 12 ~~~~a~~RL~~El~~l~~~~~~~~~~~~------~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp 85 (161)
|+..+..||+.|-+.+.++.+.|+++.. ..|++.|.|.|.|++||+||||.|.+++.||++||.+||+++|.+|
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 4556799999999999999999999852 2489999999999999999999999999999999999999999998
Q ss_pred CCcCccccCCCeeeeccCCCC--CCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHHHhhCCCCCCc
Q 031319 86 APLHPHIYSNGHICLDILYDS--WSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKE 151 (161)
Q Consensus 86 ~i~HPnI~~~G~iCl~~l~~~--W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~~~~~~~~~~~ 151 (161)
.|||||+.+|.|||++|.+. |+|+.||.+||.+||+||.+ ||..+|++.+||.-.|++....++
T Consensus 81 -l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~-Pn~~~pAq~eA~~~~~~~r~eYek 146 (158)
T KOG0424|consen 81 -LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDT-PNITSPAQTEAYTIYCQDRAEYEK 146 (158)
T ss_pred -CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcC-CCCCCchhhHHHHHHhhCHHHHHH
Confidence 89999999999999999864 99999999999999999999 999999999999888876654443
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-39 Score=238.93 Aligned_cols=124 Identities=35% Similarity=0.624 Sum_probs=115.9
Q ss_pred cCHHHHHHHHHHHHHHhhCC---CCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCC
Q 031319 12 LSKIASNRLQKELVEWQVNP---PAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (161)
Q Consensus 12 ~~~~a~~RL~~El~~l~~~~---~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i 87 (161)
|+. +.+||++|++++.+++ ..+|.+. .++|+.+..+.|.||+|||||||.|.+.|.||++|||+||+|+|.| +|
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~T-kI 78 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFIT-KI 78 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeee-ee
Confidence 345 8999999999999987 5788886 6789999999999999999999999999999999999999999999 79
Q ss_pred cCccccC-CCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhH
Q 031319 88 LHPHIYS-NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDR 138 (161)
Q Consensus 88 ~HPnI~~-~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~ 138 (161)
|||||++ +|.||+|+|.+.|.+++||..+|++||++|+. |++++|+++..
T Consensus 79 wHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~-pEp~dPqDavv 129 (200)
T KOG0418|consen 79 WHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCA-PEPKDPQDAVV 129 (200)
T ss_pred ecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcC-CCCCChHHHHH
Confidence 9999975 99999999999999999999999999999999 99999997654
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-38 Score=226.41 Aligned_cols=124 Identities=33% Similarity=0.663 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCcc
Q 031319 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH 91 (161)
Q Consensus 13 ~~~a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPn 91 (161)
.....|||++||..|.....+||++. .+||++.|.++|.||++|+|+|-.|++.+.||.+||++||.|+|+|| .||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp-c~HPN 105 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP-CFHPN 105 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc-ccCCC
Confidence 55678999999999999999999985 67899999999999999999999999999999999999999999998 79999
Q ss_pred ccCCCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhH
Q 031319 92 IYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDR 138 (161)
Q Consensus 92 I~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~ 138 (161)
||..|.||+|+|.+.|+..++++.||.+||+||-+ ||...|+|+.|
T Consensus 106 VD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGE-PNn~SPLNaqA 151 (175)
T KOG0421|consen 106 VDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGE-PNNSSPLNAQA 151 (175)
T ss_pred ccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCC-CCCCCcchhHH
Confidence 99999999999999999999999999999999999 99999998655
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.1e-37 Score=228.17 Aligned_cols=125 Identities=43% Similarity=0.784 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhCCCCCcEEe-ecC-CceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccCCC
Q 031319 19 RLQKELVEWQVNPPAGFKHK-VTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG 96 (161)
Q Consensus 19 RL~~El~~l~~~~~~~~~~~-~~~-~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~~G 96 (161)
||++|+++++++++.|+.+. .++ |++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+ ||||||+.+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~-i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP-IFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS--SBTTB-TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccc-cccccccccc
Confidence 89999999999999999997 454 89999999999999999999999999999999999999999995 9999999999
Q ss_pred eeeeccCCC-CCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHHHhhC
Q 031319 97 HICLDILYD-SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 145 (161)
Q Consensus 97 ~iCl~~l~~-~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~~~~~ 145 (161)
.||+++|.. .|+|+++|.+||.+|+++|.+ |+.++|+|.+|+......
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~-p~~~~~~n~~a~~~~~~~ 128 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSE-PNPEDPLNEEAAELYKND 128 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHS-TCTTSTSSHHHHHHHHHC
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhC-CCCCCcchHHHHHHHHHC
Confidence 999999985 599999999999999999988 899999999887655443
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-37 Score=218.78 Aligned_cols=128 Identities=30% Similarity=0.609 Sum_probs=119.8
Q ss_pred cCHHHHHHHHHHHHHHhhCCCCCcEEe--ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcC
Q 031319 12 LSKIASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (161)
Q Consensus 12 ~~~~a~~RL~~El~~l~~~~~~~~~~~--~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~H 89 (161)
|+..|+|||++|+++|..+++.||.+. .++|.+.|.++|.||+||+|+||+|..++.||.+||..||+++|.. .+||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc-~~fH 79 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC-EMFH 79 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec-cccc
Confidence 567899999999999999999999885 6789999999999999999999999999999999999999999999 6999
Q ss_pred ccccCCCeeeeccCC-------------CCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHH
Q 031319 90 PHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVK 141 (161)
Q Consensus 90 PnI~~~G~iCl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~ 141 (161)
|||+++|+||+++|. +.|+|.++++.||.++-++|.+ ||.+.++|.+|-+.
T Consensus 80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaE-PNdESgANvdA~~m 143 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAE-PNDESGANVDACKM 143 (165)
T ss_pred CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcC-CCcccCcccHHHHH
Confidence 999999999999983 4799999999999999999999 99999999887543
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.2e-36 Score=221.58 Aligned_cols=124 Identities=37% Similarity=0.715 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccCCC
Q 031319 18 NRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG 96 (161)
Q Consensus 18 ~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~~G 96 (161)
+||++|+++|++.+..|+++. .++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.+ .+|||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~-~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVT-KIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeC-CcccCCCCCCC
Confidence 799999999999999999887 5579999999999999999999999999999999999999999999 59999999999
Q ss_pred eeeeccCCCC-CCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHHHh
Q 031319 97 HICLDILYDS-WSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNC 143 (161)
Q Consensus 97 ~iCl~~l~~~-W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~~~ 143 (161)
.||+++|... |+|+++|.+||.+|+++|.+ |+.++|+|.+|.....
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~-p~~~~~~n~~aa~~~~ 127 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNE-PNPSDPLNAEAAKLYK 127 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhC-CCCCCchhHHHHHHHH
Confidence 9999999876 99999999999999999997 9999999988765544
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.9e-35 Score=216.57 Aligned_cols=126 Identities=41% Similarity=0.738 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhhCCCCCcEEe-ec-CCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccCC
Q 031319 18 NRLQKELVEWQVNPPAGFKHK-VT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN 95 (161)
Q Consensus 18 ~RL~~El~~l~~~~~~~~~~~-~~-~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~~ 95 (161)
+||++|++++++++..|+.+. .+ +|++.|+++|.||++|||+||.|+|.|.||++||++||+|+|.++ +|||||+++
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~-i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK-IYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC-ceEeeECCC
Confidence 599999999999998998875 34 499999999999999999999999999999999999999999996 899999999
Q ss_pred CeeeeccCC-CCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHHHhhC
Q 031319 96 GHICLDILY-DSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 145 (161)
Q Consensus 96 G~iCl~~l~-~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~~~~~ 145 (161)
|.||+++|. ++|+|++++.+||.+|+++|.+ |+.++|+|.+|.......
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~-p~~~~~~n~eaa~~~~~~ 129 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSE-PNPDSPLNADAATLYKKN 129 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHC
Confidence 999999998 8999999999999999999998 999999998887655443
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-34 Score=202.72 Aligned_cols=121 Identities=28% Similarity=0.564 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCcEEe--ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccc
Q 031319 15 IASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (161)
Q Consensus 15 ~a~~RL~~El~~l~~~~~~~~~~~--~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI 92 (161)
.+.+||+|||.+|++++...+... ++.|++.|.++|. |.+-||..|.|+++|.||.+|||+||+|.|.| +||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~t-kiYHpNV 79 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKT-KIYHPNV 79 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeee-eeccCCC
Confidence 367999999999999987766542 6789999999999 78889999999999999999999999999999 7999999
Q ss_pred cCCCeeeeccC-CCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhH
Q 031319 93 YSNGHICLDIL-YDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDR 138 (161)
Q Consensus 93 ~~~G~iCl~~l-~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~ 138 (161)
|+.|.+|+.++ .++|+|++.+++||++|.+++.+ |++++|+++++
T Consensus 80 De~gqvClPiis~EnWkP~T~teqVlqaLi~liN~-P~pe~plr~dl 125 (153)
T KOG0422|consen 80 DEKGQVCLPIISAENWKPATRTEQVLQALIALIND-PEPEHPLRIDL 125 (153)
T ss_pred CCCCceeeeeeecccccCcccHHHHHHHHHHHhcC-CCccccchhhH
Confidence 99999999998 57999999999999999999999 99999997655
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=213.08 Aligned_cols=136 Identities=23% Similarity=0.475 Sum_probs=116.5
Q ss_pred CCcccccccCHHHHHHHHHHHHHHhhCCCCCcEEee-cCCcee--EEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeE
Q 031319 4 SSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQR--WIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80 (161)
Q Consensus 4 ~~a~~~~~~~~~a~~RL~~El~~l~~~~~~~~~~~~-~~~~~~--w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v 80 (161)
+.+++.....+.+..||++|+.++.--+...+++.. .++++. +.++|. |.++.|+||.|.|.+.+|+.||++||+|
T Consensus 17 ~~~~~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKV 95 (184)
T KOG0420|consen 17 SRYTSTRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKV 95 (184)
T ss_pred cccccccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCee
Confidence 334466777889999999999998654444444442 344444 888888 8888999999999999999999999999
Q ss_pred EEeCCCCcCccccCCCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHHHH
Q 031319 81 IFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKN 142 (161)
Q Consensus 81 ~f~tp~i~HPnI~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~~~ 142 (161)
+|+| ++||||||.+|.||+++|.++|+|+.+|.+|+.+++.||.+ |+.+||+|.+|....
T Consensus 96 kClt-kV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~e-pn~eDpLN~eAA~~l 155 (184)
T KOG0420|consen 96 KCLT-KVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLE-PNPEDPLNKEAAAVL 155 (184)
T ss_pred eeee-ccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhcc-CCCcccccHHHHHHH
Confidence 9999 79999999999999999999999999999999999999999 999999998885533
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-32 Score=198.69 Aligned_cols=120 Identities=20% Similarity=0.576 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccC-
Q 031319 17 SNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS- 94 (161)
Q Consensus 17 ~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~- 94 (161)
.||+-.|...|.. .+..+. .++++.+++|.+.||+||||+||+++++|.+|++||++.|+|.|.+ +||||||++
T Consensus 5 ~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvn-KIfHPNIDe~ 80 (189)
T KOG0416|consen 5 KRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVN-KIFHPNIDEA 80 (189)
T ss_pred ccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCccccee-eccCCCchhc
Confidence 5889999888875 355676 6677999999999999999999999999999999999999999999 799999996
Q ss_pred CCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChhHHH
Q 031319 95 NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYV 140 (161)
Q Consensus 95 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~~~~ 140 (161)
+|.||++.+++.|+|.+.|.-|+....-.|...||+.+|+|.+|..
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAa 126 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAA 126 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHH
Confidence 9999999999999999999999988777766679999999988744
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-31 Score=193.74 Aligned_cols=128 Identities=26% Similarity=0.544 Sum_probs=119.6
Q ss_pred cccccCHHHHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCC
Q 031319 8 SRKALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPA 86 (161)
Q Consensus 8 ~~~~~~~~a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~ 86 (161)
|+.+.+...++.|.+|++.+...|+.||.+. .++|.....+.|.||.||||++|+|++.+.+..|||.+||+-.|+| +
T Consensus 3 snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlT-K 81 (223)
T KOG0423|consen 3 SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLT-K 81 (223)
T ss_pred cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeee-e
Confidence 3577888899999999999999999999997 5678888899999999999999999999999999999999999999 7
Q ss_pred CcCccccCCCeeeeccCCCCCCCcCCHHHHHHHHHHHhCCCCCCCCCCChh
Q 031319 87 PLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADND 137 (161)
Q Consensus 87 i~HPnI~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p~~~~ 137 (161)
||||||..+|.||++.|..+|+|..+|.+||..|.+||.. |+++..+|.+
T Consensus 82 IFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~-PnPESALNEe 131 (223)
T KOG0423|consen 82 IFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIE-PNPESALNEE 131 (223)
T ss_pred eccCCcccCceehhhhhhcccCcccchhhHhhhhheeeec-CChHHHHhHH
Confidence 9999999999999999999999999999999999999999 8888877543
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-28 Score=186.29 Aligned_cols=112 Identities=28% Similarity=0.533 Sum_probs=102.5
Q ss_pred cCHHHHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCC-cC
Q 031319 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP-LH 89 (161)
Q Consensus 12 ~~~~a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i-~H 89 (161)
.+.+|.|||+||++.|+++|.+.|.+. .++|++.||.+|.||+||||+||.|+.+|.||.+||++||.|+++||.. |-
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 467899999999999999999999986 6899999999999999999999999999999999999999999999943 54
Q ss_pred ccccCCCeeeeccC---CCCCCCcCCHHHHHHHHHHHhCCC
Q 031319 90 PHIYSNGHICLDIL---YDSWSPAMTVSSVCISILSMLSSS 127 (161)
Q Consensus 90 PnI~~~G~iCl~~l---~~~W~p~~~i~~vl~~i~~ll~~~ 127 (161)
+| -++||++. .+.|+|+|++.+||.+|.++|.+.
T Consensus 82 tn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 82 TN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred cC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC
Confidence 44 79999776 578999999999999999999873
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.4e-22 Score=155.82 Aligned_cols=117 Identities=26% Similarity=0.587 Sum_probs=102.0
Q ss_pred ccccCHHHHHHHHHHHHHHhhCCCCCcEE-eecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCC
Q 031319 9 RKALSKIASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP 87 (161)
Q Consensus 9 ~~~~~~~a~~RL~~El~~l~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i 87 (161)
+.+..+.++|||++|.++++ +|...+.. ..++|++.|+++|.||.||-|+||+|+.+|.||.+||++||.+..+||+.
T Consensus 5 rYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG 83 (314)
T KOG0428|consen 5 RYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG 83 (314)
T ss_pred hhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence 45667889999999999999 56555555 48999999999999999999999999999999999999999999999843
Q ss_pred cCccccCCCeeeeccC---CCCCCCcCCHHHHHHHHHHHhCCCCC
Q 031319 88 LHPHIYSNGHICLDIL---YDSWSPAMTVSSVCISILSMLSSSTV 129 (161)
Q Consensus 88 ~HPnI~~~G~iCl~~l---~~~W~p~~~i~~vl~~i~~ll~~~p~ 129 (161)
. +.-+-+||+++. .+.|.|.|+|...|.+|..+|-..|+
T Consensus 84 R---FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 84 R---FEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred c---eeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 2 344678999987 47899999999999999999987664
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.4e-19 Score=161.31 Aligned_cols=140 Identities=21% Similarity=0.461 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCC-CCcCccc
Q 031319 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP-APLHPHI 92 (161)
Q Consensus 15 ~a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp-~i~HPnI 92 (161)
...+..+.|++-|..+.+.+|.+. .++.+....++|.||+||||..|+|.|.|.||++||..||.|.+.+- .-++||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 667777788888888888999997 67888888999999999999999999999999999999999999985 2389999
Q ss_pred cCCCeeeeccCC-------CCCCCcCCHHHHHHHHHHHhCC-CCCCCCCCChhHHHHHhhCCCCCCcceeEeeCC
Q 031319 93 YSNGHICLDILY-------DSWSPAMTVSSVCISILSMLSS-STVKQRPADNDRYVKNCRNGRSPKETRWWFHDD 159 (161)
Q Consensus 93 ~~~G~iCl~~l~-------~~W~p~~~i~~vl~~i~~ll~~-~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (161)
+++|+||+++|+ +-|+|+-+|.+||.+||.|..+ +|..+++. ....+....+.+..+.|+++
T Consensus 931 y~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~g-----y~~~~g~~~g~~~s~~y~~~ 1000 (1101)
T KOG0895|consen 931 YEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEAG-----YEKQRGTAEGEKNSRVYNEN 1000 (1101)
T ss_pred ccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCccc-----ccccccccccccccccccch
Confidence 999999999995 4699988999999999999665 45444443 23334444444444555443
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.2e-17 Score=125.58 Aligned_cols=110 Identities=19% Similarity=0.326 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCC--CCCeEEEeCCCCcCcccc
Q 031319 17 SNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM--EAPQVIFLPPAPLHPHIY 93 (161)
Q Consensus 17 ~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~--~pP~v~f~tp~i~HPnI~ 93 (161)
---|+.|+..+.+.+..||++. .-.|-+.|.++|++.+| .|.||+|+|+|.+|++||. .-|+|.|.++ +|||+|+
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~-vfHP~ic 98 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQS-VFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecc-ccccccC
Confidence 4567889999998999999996 66899999999999888 9999999999999999994 4599999996 8999998
Q ss_pred C-CCeeeeccCCCCCCCcC-CHHHHHHHHHHHhCCCCC
Q 031319 94 S-NGHICLDILYDSWSPAM-TVSSVCISILSMLSSSTV 129 (161)
Q Consensus 94 ~-~G~iCl~~l~~~W~p~~-~i~~vl~~i~~ll~~~p~ 129 (161)
+ ++.+|++-....|+-.- .|++||..||..|.+ |+
T Consensus 99 p~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~d-pd 135 (258)
T KOG0429|consen 99 PKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYD-PD 135 (258)
T ss_pred CCccceeHhhhhhhhhccccHHHHHHHHHHHHhcC-cc
Confidence 6 99999987766698766 699999999999999 44
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.4e-16 Score=142.21 Aligned_cols=120 Identities=29% Similarity=0.531 Sum_probs=108.6
Q ss_pred cccccCHHHHHHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCC-
Q 031319 8 SRKALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP- 85 (161)
Q Consensus 8 ~~~~~~~~a~~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp- 85 (161)
+....+....+|+++|++-+.++.+.++.+. .+.++....++|.||.||||++|+|.|.|.||..||..||.|.+.|.
T Consensus 275 ~~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~ 354 (1101)
T KOG0895|consen 275 SSKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGG 354 (1101)
T ss_pred CCCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeecc
Confidence 3455677889999999999999999998886 77889999999999999999999999999999999999999999995
Q ss_pred -CCcCccccCCCeeeeccCC-------CCCCCc-CCHHHHHHHHHHHhCCC
Q 031319 86 -APLHPHIYSNGHICLDILY-------DSWSPA-MTVSSVCISILSMLSSS 127 (161)
Q Consensus 86 -~i~HPnI~~~G~iCl~~l~-------~~W~p~-~~i~~vl~~i~~ll~~~ 127 (161)
.-+.||.+.+|+||+++|. +.|+|. .+|.++|..||.++.++
T Consensus 355 ~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 355 GVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 2389999999999999983 579999 68999999999998874
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-12 Score=93.71 Aligned_cols=115 Identities=24% Similarity=0.356 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhCCCCCcEE---eecCC--ceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccc
Q 031319 18 NRLQKELVEWQVNPPAGFKH---KVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI 92 (161)
Q Consensus 18 ~RL~~El~~l~~~~~~~~~~---~~~~~--~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI 92 (161)
-||.+|+.+=++.--++... .+.+| +..|...|.||+-|+||+.+|.++|..-++||..||+|+|.+ ++--.-|
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~t-kinm~gv 86 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGT-KINMNGV 86 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEE-Eeeeccc
Confidence 36777777765543333222 23333 568999999999999999999999999999999999999999 6766777
Q ss_pred cC-CCeeeeccC--CCCCCCcCCHHHHHHHHHHHhCCCCCCCCC
Q 031319 93 YS-NGHICLDIL--YDSWSPAMTVSSVCISILSMLSSSTVKQRP 133 (161)
Q Consensus 93 ~~-~G~iCl~~l--~~~W~p~~~i~~vl~~i~~ll~~~p~~~~p 133 (161)
.. +|.+.-..+ -.+|+..++++.||..++.+|...-|...+
T Consensus 87 n~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~~eN~kl~ 130 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMSKENRKLP 130 (138)
T ss_pred ccCCCccCccccchhhcccccchhhHHHHhhhHHHHHHHhhccc
Confidence 64 667654322 368999999999999999887764444433
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.8e-09 Score=74.21 Aligned_cols=74 Identities=24% Similarity=0.436 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCCCCCCeEEEeCCCCcCccccCCCeeeeccCC-CCCCCcCCHHHHHHHHHHHhCCC-CCCCCCCCh
Q 031319 63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-DSWSPAMTVSSVCISILSMLSSS-TVKQRPADN 136 (161)
Q Consensus 63 f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~~G~iCl~~l~-~~W~p~~~i~~vl~~i~~ll~~~-p~~~~p~~~ 136 (161)
.-+.+.|+++||+.||.+|...|.+-..-|-.+|.||+.+|. ++|+.+++++.++++|-..+..- -....|+++
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k 88 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK 88 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence 456788999999999999988886556667789999999994 68999999999999999998862 123445543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.64 E-value=8.4e-08 Score=69.61 Aligned_cols=68 Identities=28% Similarity=0.698 Sum_probs=61.9
Q ss_pred CCCeEEEEEEcCCCCCCCCCeEEEeCCCC--cCccccCCCeeee---ccCCCCCCCcCCHHHHHHHHHHHhCC
Q 031319 59 ANETFELQVDFPEHYPMEAPQVIFLPPAP--LHPHIYSNGHICL---DILYDSWSPAMTVSSVCISILSMLSS 126 (161)
Q Consensus 59 egg~f~~~l~fp~~YP~~pP~v~f~tp~i--~HPnI~~~G~iCl---~~l~~~W~p~~~i~~vl~~i~~ll~~ 126 (161)
.|+.+.++|.||++||..||.|....+.- +-|||+.+|.+|+ ....+.|.|.-.+.++|..++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999997632 6799999999999 77788999999999999999999986
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.40 E-value=7.9e-07 Score=63.60 Aligned_cols=82 Identities=23% Similarity=0.412 Sum_probs=55.5
Q ss_pred CceeEEEEEecCCCCCCCCCeEE--EEEEcCCCCCCCCCeEEEeCC---CC-cCccccCCCeeeeccCCCCCCC-cCCHH
Q 031319 42 NLQRWIIEVNGAPGTLYANETFE--LQVDFPEHYPMEAPQVIFLPP---AP-LHPHIYSNGHICLDILYDSWSP-AMTVS 114 (161)
Q Consensus 42 ~~~~w~~~i~gp~~tpyegg~f~--~~l~fp~~YP~~pP~v~f~tp---~i-~HPnI~~~G~iCl~~l~~~W~p-~~~i~ 114 (161)
.+....++|.- .|+|..|. +.|-+|.+||..||.+..... .| -+.+||++|+|.+..|. +|++ ..+|.
T Consensus 31 ~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~ 105 (121)
T PF05743_consen 31 LLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HH
T ss_pred eEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHH
Confidence 34445555543 59998885 566679999999998866542 11 24599999999998885 4987 67899
Q ss_pred HHHHHHHHHhCCCC
Q 031319 115 SVCISILSMLSSST 128 (161)
Q Consensus 115 ~vl~~i~~ll~~~p 128 (161)
+++..++..|.++|
T Consensus 106 ~lv~~l~~~F~~~p 119 (121)
T PF05743_consen 106 DLVQELQAVFSEEP 119 (121)
T ss_dssp HHHHHHHHCCCHS-
T ss_pred HHHHHHHHHHhHcC
Confidence 99999999998754
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.33 E-value=6.8e-07 Score=64.82 Aligned_cols=100 Identities=21% Similarity=0.393 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcEEeecCCceeEEEEEecCCCCCCCCCe----------EEEEEEcCCCCCCCCCeEEEe
Q 031319 14 KIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANET----------FELQVDFPEHYPMEAPQVIFL 83 (161)
Q Consensus 14 ~~a~~RL~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpyegg~----------f~~~l~fp~~YP~~pP~v~f~ 83 (161)
..+..||..|++.|.+ .+.... ++-..|.-.-.-+.||-|.|.+ |.+++.+|..||..||.|...
T Consensus 23 ~~W~~RLKEEy~aLI~----Yv~~nK-~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIK----YVENNK-ENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHH-HTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHHH----HHHhcc-cccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 7899999999999864 111111 1112232222336666666643 556777799999999999876
Q ss_pred CCCCcCccccCCCeeeeccCC----CCCCCcCCHHHHHH
Q 031319 84 PPAPLHPHIYSNGHICLDILY----DSWSPAMTVSSVCI 118 (161)
Q Consensus 84 tp~i~HPnI~~~G~iCl~~l~----~~W~p~~~i~~vl~ 118 (161)
.=..-..-.+.+|+||++... ..=.|.++|.+.|.
T Consensus 98 eLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHala 136 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHALA 136 (161)
T ss_dssp GGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHHH
T ss_pred ccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHHH
Confidence 533355667889999998753 34478889888763
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00016 Score=59.49 Aligned_cols=82 Identities=21% Similarity=0.412 Sum_probs=62.9
Q ss_pred CceeEEEEEecCCCCCCCCCeEEEEEE--cCCCCCCCCCeEEEeCC-----CCcCccccCCCeeeeccCCCCCCC-cCCH
Q 031319 42 NLQRWIIEVNGAPGTLYANETFELQVD--FPEHYPMEAPQVIFLPP-----APLHPHIYSNGHICLDILYDSWSP-AMTV 113 (161)
Q Consensus 42 ~~~~w~~~i~gp~~tpyegg~f~~~l~--fp~~YP~~pP~v~f~tp-----~i~HPnI~~~G~iCl~~l~~~W~p-~~~i 113 (161)
.++...++|. .+|.|.+|.+=|. +.+.||..||.+. ..| .-.|-+|+.+|+|.|..|.+ |.+ +.+|
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~-VnPT~~M~ik~~~hVd~nG~V~LPYLh~-W~~pssdL 124 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICY-VNPTSTMIIKVHEHVDPNGKVYLPYLHN-WDPPSSDL 124 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEE-ecCCchhhhHHhhccCCCCeEechhhcc-CCCccchH
Confidence 4555555555 4799988875544 6999999999774 444 11489999999999999975 975 5579
Q ss_pred HHHHHHHHHHhCCCCC
Q 031319 114 SSVCISILSMLSSSTV 129 (161)
Q Consensus 114 ~~vl~~i~~ll~~~p~ 129 (161)
..++..+.+.|.++|.
T Consensus 125 v~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 125 VGLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 9999999999998554
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=9.9e-05 Score=52.94 Aligned_cols=100 Identities=21% Similarity=0.420 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCcEEeecCCceeEEEEEecCCCCCCCCCe----------EEEEEEcCCCCCCCCCeEEE
Q 031319 13 SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANET----------FELQVDFPEHYPMEAPQVIF 82 (161)
Q Consensus 13 ~~~a~~RL~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpyegg~----------f~~~l~fp~~YP~~pP~v~f 82 (161)
...++.||..|++.|.+- +.. ..++-..|.-+-..++||-|-|.+ |.+++.+|..||..+|.+..
T Consensus 25 ~~~wvqrlkeey~sli~y----vqn-nk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 25 GDLWVQRLKEEYQSLIAY----VQN-NKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred chHHHHHHHHHHHHHHHH----HHh-CcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 567899999999998641 111 112223344334558888888754 55677779999999998876
Q ss_pred eCCCCcCccccCCCeeeeccC-CCCC---CCcCCHHHHH
Q 031319 83 LPPAPLHPHIYSNGHICLDIL-YDSW---SPAMTVSSVC 117 (161)
Q Consensus 83 ~tp~i~HPnI~~~G~iCl~~l-~~~W---~p~~~i~~vl 117 (161)
..-..-.-..+.+|+||+.-. ..-| .|.++|.+.+
T Consensus 100 peldgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred cccCchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 542223344577999998543 2335 4666777654
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.52 E-value=0.035 Score=39.73 Aligned_cols=89 Identities=20% Similarity=0.477 Sum_probs=60.3
Q ss_pred CCcEEe-ecCCceeEEEEEec---CCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccCCCee--eec-----
Q 031319 33 AGFKHK-VTDNLQRWIIEVNG---APGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHI--CLD----- 101 (161)
Q Consensus 33 ~~~~~~-~~~~~~~w~~~i~g---p~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~~G~i--Cl~----- 101 (161)
.|+..+ ..+.-..|.+ |.| |+| .|.+..-.+-|.+|..||..+|.+-+..|...- -.+|.+ |-+
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~---~~G~~iP~~~~~~~~~ 86 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVYPPLKL---ADGGPIPNAAEVTQTF 86 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCC-ccCccceEEEEECCCCCCCCCCCcEEECCceEc---cCCCcCCchhcchhhc
Confidence 355554 4444456655 666 555 799999999999999999999988887773210 011223 322
Q ss_pred ---------cCCCCCCCcC-CHHHHHHHHHHHhCC
Q 031319 102 ---------ILYDSWSPAM-TVSSVCISILSMLSS 126 (161)
Q Consensus 102 ---------~l~~~W~p~~-~i~~vl~~i~~ll~~ 126 (161)
.....|.|.. +|.+.|..|...|..
T Consensus 87 ~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~~ 121 (122)
T PF14462_consen 87 DGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALAK 121 (122)
T ss_pred CCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 1224699987 699999999888764
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.76 E-value=0.033 Score=38.11 Aligned_cols=68 Identities=15% Similarity=0.257 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCCCcEEeecCCceeEEEEEec--CCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCC
Q 031319 18 NRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNG--APGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (161)
Q Consensus 18 ~RL~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~g--p~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp 85 (161)
.+...|+..|+.-=...+......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...++
T Consensus 4 e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 45677888877532222211123344556666632 233344556789999999999999999998885
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.46 E-value=0.28 Score=33.10 Aligned_cols=27 Identities=41% Similarity=0.710 Sum_probs=22.9
Q ss_pred CCCeEEEEEEcCCCCCCCCCeEEEeCC
Q 031319 59 ANETFELQVDFPEHYPMEAPQVIFLPP 85 (161)
Q Consensus 59 egg~f~~~l~fp~~YP~~pP~v~f~tp 85 (161)
..-.+.+.+.||.+||..+|.|.+.++
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345588999999999999999988874
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=93.35 E-value=0.14 Score=38.39 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=49.1
Q ss_pred EEEEEcCCCCCCCCCeEEEeCCCC--cCccccCC-----CeeeeccC-CCCCCCcCCHHHHHHHHHHHhCC
Q 031319 64 ELQVDFPEHYPMEAPQVIFLPPAP--LHPHIYSN-----GHICLDIL-YDSWSPAMTVSSVCISILSMLSS 126 (161)
Q Consensus 64 ~~~l~fp~~YP~~pP~v~f~tp~i--~HPnI~~~-----G~iCl~~l-~~~W~p~~~i~~vl~~i~~ll~~ 126 (161)
.+.|.|+.+||..+|.|.+.-..+ .+||+... ..+|+--- ...|.+..++..+|..|..-|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 367899999999999877776321 25788765 67998544 35699999999999999988774
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=90.82 E-value=0.74 Score=37.73 Aligned_cols=90 Identities=22% Similarity=0.356 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcEEeecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCcccc
Q 031319 14 KIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY 93 (161)
Q Consensus 14 ~~a~~RL~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~ 93 (161)
.....+|.+|+.+|..+. .+.+..++++...++.+..- .....++|.++.+||.++|.+...-|..+
T Consensus 98 ~~~ys~ll~EIe~IGW~k--l~~i~~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~~~----- 164 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDK--LVQIQFDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPIPF----- 164 (291)
T ss_dssp -GGC-CHHHHHHHHHCGC--CEEEEE-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS-H-----
T ss_pred cHHHHHHHHHHHHhcccc--ceEEecCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCcch-----
Confidence 556688899999886543 34444577888877777731 14678999999999999997544443111
Q ss_pred CCCeeeeccCCCCCCC-cCCHHHHHHHHHHHhCC
Q 031319 94 SNGHICLDILYDSWSP-AMTVSSVCISILSMLSS 126 (161)
Q Consensus 94 ~~G~iCl~~l~~~W~p-~~~i~~vl~~i~~ll~~ 126 (161)
...|.+ ..++.+|+...+..|..
T Consensus 165 ----------~~~w~~~~ssL~~v~~qF~~~le~ 188 (291)
T PF09765_consen 165 ----------SLSWSPSQSSLKDVVQQFQEALES 188 (291)
T ss_dssp ----------HHHHHCHT-SHHHHHHHHHHHHHH
T ss_pred ----------hhhhcccccCHHHHHHHHHHHHHH
Confidence 124888 66899988888777663
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.77 E-value=3.4 Score=32.29 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCCCCCCeEEEeCCCCcCc
Q 031319 62 TFELQVDFPEHYPMEAPQVIFLPPAPLHP 90 (161)
Q Consensus 62 ~f~~~l~fp~~YP~~pP~v~f~tp~i~HP 90 (161)
.+.+.+.++.+||..+|-|.+..+.-++.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~~~~~~~~ 78 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAFENENLED 78 (215)
T ss_pred cEEEEEEccCCCCCCCcceeccccccccH
Confidence 78899999999999999995555433443
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.01 E-value=6.6 Score=36.38 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCCCCcEEe-ecCCceeEEEEEecCCCCCCCCCeE-EEEEEcCCCCCCC-CCeEEEeCC
Q 031319 18 NRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETF-ELQVDFPEHYPME-APQVIFLPP 85 (161)
Q Consensus 18 ~RL~~El~~l~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpyegg~f-~~~l~fp~~YP~~-pP~v~f~tp 85 (161)
.-|.+|+.-|-.. -..+.++ .+-.-..-.+.+.||-- +-.|-+| ++.|.||.+||.+ +|+++|..|
T Consensus 423 QnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4455666555332 1233332 22122345667777544 3344444 8999999999986 599999987
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=67.21 E-value=7.4 Score=32.52 Aligned_cols=26 Identities=23% Similarity=0.631 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCCCCCCeEEEeCCCCcC
Q 031319 62 TFELQVDFPEHYPMEAPQVIFLPPAPLH 89 (161)
Q Consensus 62 ~f~~~l~fp~~YP~~pP~v~f~tp~i~H 89 (161)
.|-+.|.+|..||...|.++|.+ +||
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS--~yH 332 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS--VYH 332 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe--ecc
Confidence 46778888999999999999999 588
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=66.11 E-value=21 Score=29.87 Aligned_cols=61 Identities=23% Similarity=0.392 Sum_probs=43.1
Q ss_pred CCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccCCCeeeeccCCCCCCCcC--CHHHHHHHHHHH
Q 031319 57 LYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAM--TVSSVCISILSM 123 (161)
Q Consensus 57 pyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~~G~iCl~~l~~~W~p~~--~i~~vl~~i~~l 123 (161)
||.|-..+-+|.|...||..||-+.|-.-.-|+|-... +..| .+|.+.- .+..++..+..+
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHHHHH
Confidence 68899999999999999999999999631248884322 1222 3598765 466666666544
No 40
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=65.38 E-value=11 Score=28.28 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=22.5
Q ss_pred ccccCCCeeeeccCCCCCCCcCCHHHHHHHHHHHhCC
Q 031319 90 PHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126 (161)
Q Consensus 90 PnI~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~ 126 (161)
+||..+|+||+.... .|.......+..+...|.+
T Consensus 98 ~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~ 131 (175)
T PF14460_consen 98 FNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFN 131 (175)
T ss_pred cccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhC
Confidence 699999999996642 3444444556666655555
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=62.24 E-value=13 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCC-CCCCeEEEeC
Q 031319 60 NETFELQVDFPEHYP-MEAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP-~~pP~v~f~t 84 (161)
.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999999875
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=60.95 E-value=13 Score=28.40 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCeEEEEEEcCCCCCCCCCeEEEeC
Q 031319 59 ANETFELQVDFPEHYPMEAPQVIFLP 84 (161)
Q Consensus 59 egg~f~~~l~fp~~YP~~pP~v~f~t 84 (161)
+.|.|.|+=.||--||.++|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 34889999999999999999999976
No 43
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=57.45 E-value=21 Score=28.30 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=34.0
Q ss_pred ccccCCCeeeeccCCCCCCCcC-CHHHHHHHHHHHhCCC----CCCC------CCCChhHHHHHhhCCC
Q 031319 90 PHIYSNGHICLDILYDSWSPAM-TVSSVCISILSMLSSS----TVKQ------RPADNDRYVKNCRNGR 147 (161)
Q Consensus 90 PnI~~~G~iCl~~l~~~W~p~~-~i~~vl~~i~~ll~~~----p~~~------~p~~~~~~~~~~~~~~ 147 (161)
.||+++|+||+.-.. .|.. ++.+ +......|.+. ++.. ...|.-++-++...+.
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH~n~~~~~~~t~~~~~~~lwk~ll~~~ 203 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTHPNPASKDRLTYGVGPYAFWKDMLDGK 203 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccCCCCCccccccccCcHHHHHHHHHhCC
Confidence 589999999996553 5555 5666 88888877651 2222 1245556666654444
No 44
>smart00340 HALZ homeobox associated leucin zipper.
Probab=57.01 E-value=9.7 Score=22.05 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhC
Q 031319 17 SNRLQKELVEWQVN 30 (161)
Q Consensus 17 ~~RL~~El~~l~~~ 30 (161)
-+||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999864
No 45
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=52.19 E-value=24 Score=26.24 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCCC-----CCCCeEEEeC
Q 031319 60 NETFELQVDFPEHYP-----MEAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP-----~~pP~v~f~t 84 (161)
.|.|.|+-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 378999999999999 8999999875
No 46
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=43.19 E-value=1.4e+02 Score=22.37 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=56.1
Q ss_pred HHHHHHhhCC----CCCcEEeecCCceeEEEEEec-CCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCCCCcCccccCCC
Q 031319 22 KELVEWQVNP----PAGFKHKVTDNLQRWIIEVNG-APGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG 96 (161)
Q Consensus 22 ~El~~l~~~~----~~~~~~~~~~~~~~w~~~i~g-p~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp~i~HPnI~~~G 96 (161)
+|+..+.... ..|+.+...+-+ ... +|++ |+-.|-.=| ..++|.| .||-..||+|.|+.| |.----+..
T Consensus 12 R~V~~~~~~~~a~r~rgwfLiqa~fP-~~~-~iF~~~kvaP~~~~-~~lr~d~-~n~Dl~PPSV~fvDp--~T~~~~~~k 85 (177)
T PF14455_consen 12 RQVGRFRPRADAYRMRGWFLIQASFP-TAD-VIFAAPKVAPRSIG-LRLRFDF-TNWDLRPPSVVFVDP--FTGTPLARK 85 (177)
T ss_pred HHHhhhhhhhhHhhhcCeEEEEccCc-eEE-EEeeCCccCccccc-eEEEEec-cccCcCCCceEEecc--ccCCccccc
Confidence 4555554332 245655433322 222 3454 444553323 4566666 789999999999997 221112223
Q ss_pred eeeeccCCCCCCCcC--CHHHHHH-----HHHHHhCCCCCCCCCC
Q 031319 97 HICLDILYDSWSPAM--TVSSVCI-----SILSMLSSSTVKQRPA 134 (161)
Q Consensus 97 ~iCl~~l~~~W~p~~--~i~~vl~-----~i~~ll~~~p~~~~p~ 134 (161)
.+-+++|..+--+.. .+-++|. +++.+|...|....|.
T Consensus 86 ~l~~~mlr~~~L~~app~~~~~l~qq~~~s~~~~~~ah~~~~~pF 130 (177)
T PF14455_consen 86 DLGLKMLRRPHLPGAPPEMISVLMQQQALSLQDFLSAHPNTGRPF 130 (177)
T ss_pred ccchhhhhcCCCCCCCchhhhhcccccchhhhhhccCCCCCCCcE
Confidence 455566644322222 2444443 4777777766666554
No 47
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=41.30 E-value=40 Score=25.90 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.3
Q ss_pred CCeEEEEEEcCCCCCC-----CCCeEEEeC
Q 031319 60 NETFELQVDFPEHYPM-----EAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP~-----~pP~v~f~t 84 (161)
.|.|.|+-..|-.||. .||.|+|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4789999999999998 888887764
No 48
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=40.00 E-value=39 Score=28.05 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCCCCCCeEEEeCCC
Q 031319 60 NETFELQVDFPEHYPMEAPQVIFLPPA 86 (161)
Q Consensus 60 gg~f~~~l~fp~~YP~~pP~v~f~tp~ 86 (161)
.-.+.+.+..+..||...|.|....||
T Consensus 44 yvcvtl~m~vs~gYP~esPtvtl~nPR 70 (368)
T KOG4445|consen 44 YVCVTLEMTVSEGYPAESPTVTLSNPR 70 (368)
T ss_pred eEEEEEEEecCCCCCCcCCceEecCCC
Confidence 356788999999999999999999985
No 49
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=38.45 E-value=49 Score=25.27 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCCCCC-----CCCeEEEeC
Q 031319 61 ETFELQVDFPEHYPM-----EAPQVIFLP 84 (161)
Q Consensus 61 g~f~~~l~fp~~YP~-----~pP~v~f~t 84 (161)
|.|.|+-.+|--||. .||.|+|.-
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 789999999999995 788777764
No 50
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=35.59 E-value=28 Score=21.57 Aligned_cols=21 Identities=10% Similarity=0.340 Sum_probs=13.2
Q ss_pred CCCCcCCHHHHHHHHHHHhCC
Q 031319 106 SWSPAMTVSSVCISILSMLSS 126 (161)
Q Consensus 106 ~W~p~~~i~~vl~~i~~ll~~ 126 (161)
+|+|.++|+++|...-.-...
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~ 57 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKK 57 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 799999999999876665444
No 51
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=35.51 E-value=1.1e+02 Score=20.66 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=20.8
Q ss_pred CCCCeEEEEEEcCCCCCCCCCeEEEeCC
Q 031319 58 YANETFELQVDFPEHYPMEAPQVIFLPP 85 (161)
Q Consensus 58 yegg~f~~~l~fp~~YP~~pP~v~f~tp 85 (161)
-||..+.|.-.-|..|| .|.|...++
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46677888888899999 489988875
No 52
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.83 E-value=16 Score=28.10 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCeeeeccCCCCCCCcCCHHHHHHHHHHHhCC
Q 031319 95 NGHICLDILYDSWSPAMTVSSVCISILSMLSS 126 (161)
Q Consensus 95 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~ 126 (161)
.+..|++++.+-|+|.+|++.-+.-++..+.+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999988777766554
No 53
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=32.23 E-value=1.5e+02 Score=19.49 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=26.6
Q ss_pred eeEEEEEecCCCCCCCCCeEEEEEEcCCCCCCCCCeEEEeCC
Q 031319 44 QRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP 85 (161)
Q Consensus 44 ~~w~~~i~gp~~tpyegg~f~~~l~fp~~YP~~pP~v~f~tp 85 (161)
..|.+-+.|+.+..-..-+=++.+.+.+.|+. |...+..|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 57999999988764444445788888888876 66666665
No 54
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=31.80 E-value=46 Score=29.92 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=24.1
Q ss_pred CCCCCeEEEEEEcCCCCCC---CCCeEEEeCCC
Q 031319 57 LYANETFELQVDFPEHYPM---EAPQVIFLPPA 86 (161)
Q Consensus 57 pyegg~f~~~l~fp~~YP~---~pP~v~f~tp~ 86 (161)
||.=|.|.+ |.+|+.||+ +-|.+.|+||.
T Consensus 249 pY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 249 PYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CcccccceE-EEecCCCCcccccCcceeeecch
Confidence 688888885 668999998 46999999993
No 55
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=30.72 E-value=1e+02 Score=24.83 Aligned_cols=44 Identities=14% Similarity=0.296 Sum_probs=26.8
Q ss_pred eeEEEEEecCCCCCCCC---CeEEEEEEc-----CCCCCCCCCeEEEeCCCCc
Q 031319 44 QRWIIEVNGAPGTLYAN---ETFELQVDF-----PEHYPMEAPQVIFLPPAPL 88 (161)
Q Consensus 44 ~~w~~~i~gp~~tpyeg---g~f~~~l~f-----p~~YP~~pP~v~f~tp~i~ 88 (161)
--|++......-....| ..|+.+|.+ ..|-||++|+|..++. -|
T Consensus 103 ~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK-~f 154 (276)
T PF00845_consen 103 IPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSK-QF 154 (276)
T ss_pred CCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeec-cc
Confidence 34666555422222333 234555655 3789999999999994 44
No 56
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=27.53 E-value=88 Score=25.64 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCeEEEEEEcCCCCC------------------CCCCeEEEeC
Q 031319 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP------------------~~pP~v~f~t 84 (161)
.|.|.|+=.+|.-|| ..||.|+|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 488999999999997 6788888874
No 57
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=24.78 E-value=1.1e+02 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=21.2
Q ss_pred CCeEEEEEEcCCCCC------------------CCCCeEEEeC
Q 031319 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP------------------~~pP~v~f~t 84 (161)
.|.|.|+-..|.-|| ..||.|+|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 488999999999999 4788888874
No 58
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.41 E-value=1.1e+02 Score=24.02 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCeEEEEEEcCCCCCC-------CCCeEEEeC
Q 031319 60 NETFELQVDFPEHYPM-------EAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP~-------~pP~v~f~t 84 (161)
.|.|.|+-..|--||. .||.|+|.-
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~V 153 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFSL 153 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEEE
Confidence 4889999999999975 789888853
No 59
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=24.28 E-value=53 Score=20.41 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhh
Q 031319 17 SNRLQKELVEWQV 29 (161)
Q Consensus 17 ~~RL~~El~~l~~ 29 (161)
.+||++||+++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4799999999854
No 60
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=24.25 E-value=1.1e+02 Score=24.97 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.5
Q ss_pred CCeEEEEEEcCCCCC------------------CCCCeEEEeC
Q 031319 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP------------------~~pP~v~f~t 84 (161)
.|.|.|+-.+|..|| ..||.|+|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 488999999998887 5778888764
No 61
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=23.45 E-value=1.2e+02 Score=24.89 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCeEEEEEEcCCCCC------------------CCCCeEEEeC
Q 031319 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP------------------~~pP~v~f~t 84 (161)
.|.|.|+=..|.-|| ..||.|+|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 488999999999997 5678887764
No 62
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=23.04 E-value=1.2e+02 Score=23.79 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.1
Q ss_pred CCeEEEEEEcCCCCCC-------CCCeEEEeC
Q 031319 60 NETFELQVDFPEHYPM-------EAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP~-------~pP~v~f~t 84 (161)
.|.|.|+=.+|--||. .||.|+|.-
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~V 148 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFSL 148 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEEE
Confidence 4889999999999975 889888853
No 63
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=22.63 E-value=29 Score=32.55 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=0.0
Q ss_pred CeEEEEEEcCCCCCCCCCeEEEeC
Q 031319 61 ETFELQVDFPEHYPMEAPQVIFLP 84 (161)
Q Consensus 61 g~f~~~l~fp~~YP~~pP~v~f~t 84 (161)
.+=-++|.+|.+||..+|.+.+.+
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp ------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccH
Confidence 444588999999999999987765
No 64
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.49 E-value=1.4e+02 Score=21.68 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=20.9
Q ss_pred ecCCceeEEEEEecCCCCCCCC-CeEEEEEEc
Q 031319 39 VTDNLQRWIIEVNGAPGTLYAN-ETFELQVDF 69 (161)
Q Consensus 39 ~~~~~~~w~~~i~gp~~tpyeg-g~f~~~l~f 69 (161)
..++...|.|++.|+.||+... .+|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 4567778899999999887653 344444443
No 65
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=21.05 E-value=3e+02 Score=21.50 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCcEEeecCCceeEEEEEecCCCCCCCCCeEEEEEEcCCC-------------------CCC
Q 031319 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH-------------------YPM 75 (161)
Q Consensus 15 ~a~~RL~~El~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpyegg~f~~~l~fp~~-------------------YP~ 75 (161)
.+..||...++++++.. .+...-|.+.+....+.-| || |.|.+.|.++ |-.
T Consensus 9 s~~eR~~e~~~~~k~~L--------~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~ 78 (235)
T PF14135_consen 9 SPAERINEALAEYKKIL--------TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRL 78 (235)
T ss_pred CHHHHHHHHHHHHHHHH--------hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEE
Confidence 45677777777665421 2233457777773333223 33 7777777543 222
Q ss_pred ---CCCeEEEeCCC-CcCccccCCC
Q 031319 76 ---EAPQVIFLPPA-PLHPHIYSNG 96 (161)
Q Consensus 76 ---~pP~v~f~tp~-i~HPnI~~~G 96 (161)
.-|.+.|.|=. +.|-..++++
T Consensus 79 ~~~~gp~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 79 KQDQGPVLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred ecCCceEEEEEeCCceEEEccCCCc
Confidence 24888898854 6775555433
No 66
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=20.40 E-value=1.5e+02 Score=23.66 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=20.4
Q ss_pred CCeEEEEEEcCCCCC------------------CCCCeEEEeC
Q 031319 60 NETFELQVDFPEHYP------------------MEAPQVIFLP 84 (161)
Q Consensus 60 gg~f~~~l~fp~~YP------------------~~pP~v~f~t 84 (161)
.|.|.|+=..|.-|| ..||.|+|.-
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~V 192 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYKV 192 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEEE
Confidence 488999999999997 4678887764
No 67
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=20.22 E-value=51 Score=23.05 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=15.8
Q ss_pred CCCeeeeccCCCCCCCcCCHH
Q 031319 94 SNGHICLDILYDSWSPAMTVS 114 (161)
Q Consensus 94 ~~G~iCl~~l~~~W~p~~~i~ 114 (161)
..|.+|.-.+..+|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 355668777888999998754
No 68
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=20.09 E-value=58 Score=21.29 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 031319 15 IASNRLQKELVEW 27 (161)
Q Consensus 15 ~a~~RL~~El~~l 27 (161)
.-+|||++||+-|
T Consensus 59 SQLKRiQRdlrGL 71 (76)
T PF08203_consen 59 SQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCC
Confidence 3479999999876
Done!