BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031320
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 115/128 (89%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+
Sbjct: 23 PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 82
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA
Sbjct: 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETA 142
Query: 151 KEWTRLYA 158
+ WTRLYA
Sbjct: 143 RAWTRLYA 150
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 115/128 (89%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+
Sbjct: 21 PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 80
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA
Sbjct: 81 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETA 140
Query: 151 KEWTRLYA 158
+ WTRLYA
Sbjct: 141 RAWTRLYA 148
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 115/128 (89%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+
Sbjct: 24 PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 83
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA
Sbjct: 84 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETA 143
Query: 151 KEWTRLYA 158
+ WTRLYA
Sbjct: 144 RAWTRLYA 151
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 115/128 (89%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+
Sbjct: 19 PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 78
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA
Sbjct: 79 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETA 138
Query: 151 KEWTRLYA 158
+ WTRLYA
Sbjct: 139 RAWTRLYA 146
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 115/128 (89%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+YPM+APKVRF+TKIYHPN+
Sbjct: 26 PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 85
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL++++A+ WK +E +A+ETA
Sbjct: 86 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETA 145
Query: 151 KEWTRLYA 158
+ WTRLYA
Sbjct: 146 RAWTRLYA 153
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 110/128 (85%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP+DYPM APKVRFLTKIYHPNI
Sbjct: 23 PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
D+LGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL++++A+ W +E A A
Sbjct: 83 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 142
Query: 151 KEWTRLYA 158
+EWT+LYA
Sbjct: 143 REWTKLYA 150
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 110/129 (85%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP+DYPM APKVRFLTKIYHPNI
Sbjct: 21 PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 80
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
D+LGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL++++A+ W +E A A
Sbjct: 81 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 140
Query: 151 KEWTRLYAS 159
+EWT+LYA
Sbjct: 141 REWTKLYAK 149
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 199 bits (507), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 90/130 (69%), Positives = 108/130 (83%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI A P +N R+FN++I GP +PYEGG +KLELFLPE YPM PKVRFLTKIYHPNI
Sbjct: 19 PGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI 78
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
DKLGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL +A+H+K D+ +A A
Sbjct: 79 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVA 138
Query: 151 KEWTRLYASD 160
++W ++YA++
Sbjct: 139 RQWNKIYANN 148
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 199 bits (506), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 90/130 (69%), Positives = 108/130 (83%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI A P +N R+FN++I GP +PYEGG +KLELFLPE YPM PKVRFLTKIYHPNI
Sbjct: 19 PGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI 78
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
DKLGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL +A+H+K D+ +A A
Sbjct: 79 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVA 138
Query: 151 KEWTRLYASD 160
++W ++YA++
Sbjct: 139 RQWNKIYANN 148
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 89/129 (68%), Positives = 109/129 (84%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP+DYPM APKVRFLTKIYHPNI
Sbjct: 21 PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 80
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
D+LGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DPL++++A+ W +E A A
Sbjct: 81 DRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 140
Query: 151 KEWTRLYAS 159
+EWT+LYA
Sbjct: 141 REWTKLYAK 149
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 108/128 (84%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP+DYPM APKVRFLTKIYHP I
Sbjct: 21 PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAI 80
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
D+LGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DPL++++A+ W +E A A
Sbjct: 81 DRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKA 140
Query: 151 KEWTRLYA 158
+EWT+LYA
Sbjct: 141 REWTKLYA 148
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 149 bits (376), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 86/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP SPY GGVF L + P DYP PKV F TKIYHPNI+
Sbjct: 42 SAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQ 101
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDILKD+WSPAL I VLLSI +LL+ PNPDDPL IA +K+D +TA+EW
Sbjct: 102 GAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREW 161
Query: 154 TRLYA 158
++ YA
Sbjct: 162 SQKYA 166
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 87/128 (67%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D++ ++ I+GP+ SPY GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 22 SAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSN 81
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+D+WSPAL I VLLSI +LL+ PNPDDPL IA +K D + +A+EW
Sbjct: 82 GSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREW 141
Query: 154 TRLYASDG 161
TR YA G
Sbjct: 142 TRKYAIHG 149
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 91/125 (72%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D++ ++ I GP SPY+GG+F L++ P DYP AP+V F+TK+YHPNI+K
Sbjct: 25 SAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKN 84
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDILKD+WSPAL + VLLSI +LL+ PNP DPL +A +A++ + +TA+EW
Sbjct: 85 GVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREW 144
Query: 154 TRLYA 158
TR+YA
Sbjct: 145 TRMYA 149
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 143 bits (360), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 87/125 (69%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D++ ++ I+GPS SPY+GGVF L + P DYP PKV F TKIYHPNI+
Sbjct: 27 SAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSN 86
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA +K+D+ + A+EW
Sbjct: 87 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREW 146
Query: 154 TRLYA 158
T+ YA
Sbjct: 147 TQKYA 151
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 27 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 86
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 87 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 146
Query: 154 TRLYA 158
T+ YA
Sbjct: 147 TQKYA 151
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 154 TRLYA 158
T+ YA
Sbjct: 144 TQKYA 148
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 81
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 82 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 141
Query: 154 TRLYA 158
T+ YA
Sbjct: 142 TQKYA 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 154 TRLYA 158
T+ YA
Sbjct: 144 TQKYA 148
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 40 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 100 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 159
Query: 154 TRLYA 158
T+ YA
Sbjct: 160 TQKYA 164
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 142 bits (358), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D++ ++ I+GP+ SPY GGVF L + P DYP PK+ F TKIYHPNI+
Sbjct: 23 SAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINAN 82
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDILKD+WSPAL + VLLSI +LL+ NPDDPL IA +K D + TA+EW
Sbjct: 83 GNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREW 142
Query: 154 TRLYA 158
T+ YA
Sbjct: 143 TKKYA 147
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D++ ++ I+GP +SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 25 SAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 84
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 85 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREW 144
Query: 154 TRLYA 158
T+ YA
Sbjct: 145 TQKYA 149
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 32 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 91
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + ++EW
Sbjct: 92 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 151
Query: 154 TRLYA 158
T+ YA
Sbjct: 152 TQKYA 156
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 32 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 91
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ ++ D + A+EW
Sbjct: 92 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREW 151
Query: 154 TRLYA 158
T+ YA
Sbjct: 152 TQKYA 156
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + ++EW
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 143
Query: 154 TRLYA 158
T+ YA
Sbjct: 144 TQKYA 148
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 21 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 80
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + ++EW
Sbjct: 81 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 140
Query: 154 TRLYA 158
T+ YA
Sbjct: 141 TQKYA 145
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 85/128 (66%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 84 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 154 TRLYASDG 161
T+ YA G
Sbjct: 144 TQKYAMGG 151
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 84/125 (67%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +W PAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 84 GSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 154 TRLYA 158
T+ YA
Sbjct: 144 TQKYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 30 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 89
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + ++EW
Sbjct: 90 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 149
Query: 154 TRLYA 158
T+ YA
Sbjct: 150 TQKYA 154
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 84/125 (67%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLD L+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 84 GSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 154 TRLYA 158
T+ YA
Sbjct: 144 TQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 84/125 (67%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ +GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 154 TRLYA 158
T+ YA
Sbjct: 144 TQKYA 148
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 21 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 80
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G I LDIL+ +WSPAL+I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 81 GSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 140
Query: 154 TRLYA 158
T+ YA
Sbjct: 141 TQKYA 145
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 84/125 (67%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 25 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 84
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 85 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 144
Query: 154 TRLYA 158
T+ YA
Sbjct: 145 TQKYA 149
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 84/125 (67%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 40 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EW
Sbjct: 100 GSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 159
Query: 154 TRLYA 158
T+ YA
Sbjct: 160 TQKYA 164
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 86/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D++ ++ I+GP S Y+GGVF L + P DYP PK+ F TKIYHPNI+
Sbjct: 28 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 87
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+D+ + A+EW
Sbjct: 88 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREW 147
Query: 154 TRLYA 158
T+ YA
Sbjct: 148 TQKYA 152
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 86/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D++ ++ I+GP S Y+GGVF L + P DYP PK+ F TKIYHPNI+
Sbjct: 24 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 83
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+D+ + A+EW
Sbjct: 84 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREW 143
Query: 154 TRLYA 158
T+ YA
Sbjct: 144 TQKYA 148
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 86/125 (68%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D++ ++ I+GP S Y+GGVF L + P DYP PK+ F TKIYHPNI+
Sbjct: 40 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 99
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+D+ + A+EW
Sbjct: 100 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREW 159
Query: 154 TRLYA 158
T+ YA
Sbjct: 160 TQKYA 164
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 84/125 (67%)
Query: 34 SASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
SA P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHPNI+
Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 81
Query: 94 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153
G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + ++EW
Sbjct: 82 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141
Query: 154 TRLYA 158
T+ YA
Sbjct: 142 TQKYA 146
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Query: 24 VISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 83
+++ PGI+ +D M ILG + +PYE GVFKLE+ +PE YP P++RFLT
Sbjct: 15 MLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLT 74
Query: 84 KIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHW 139
IYHPNID GRICLD+L K W P+L I TVL SIQ L+S PNPDDPL +I+ +
Sbjct: 75 PIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEF 134
Query: 140 KADETEAVETAKEWTRLYA 158
K ++ ++ A++WT +A
Sbjct: 135 KYNKPAFLKNARQWTEKHA 153
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 82/124 (66%)
Query: 35 ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 94
A P D+M ++ I+GP+ SPY+GGVF L + P DYP PKV F T+IYHP I+ G
Sbjct: 23 AGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNG 82
Query: 95 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 154
I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +K D + A+EWT
Sbjct: 83 SISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWT 142
Query: 155 RLYA 158
+ YA
Sbjct: 143 QKYA 146
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Query: 33 ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID- 91
I A + N + I GP +PYEGG F L + +P DYP + PK++F+TKI+HPNI
Sbjct: 43 IDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISS 102
Query: 92 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAK 151
+ G ICLD+LK++WSPAL IRT LLSIQALLS P PDDP +AK +K + V+TA
Sbjct: 103 QTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTAS 162
Query: 152 EWTRLYAS 159
WT+ +A+
Sbjct: 163 VWTKTFAT 170
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 84/124 (67%)
Query: 35 ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 94
A P D++ ++ I+GP S Y+GGVF L + P DYP PK+ F TKIYHPNI+ G
Sbjct: 29 AGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNG 88
Query: 95 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 154
I LDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+D+ + A+EWT
Sbjct: 89 SIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWT 148
Query: 155 RLYA 158
+ YA
Sbjct: 149 QKYA 152
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 85/135 (62%)
Query: 25 ISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 84
I+++ P SA P DN+ + ILGP S YEGGVF L++ DYP PKV F T+
Sbjct: 15 ITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTR 74
Query: 85 IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET 144
IYH NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +IA + +
Sbjct: 75 IYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRA 134
Query: 145 EAVETAKEWTRLYAS 159
E A++WT+ YA+
Sbjct: 135 EHDRMARQWTKRYAT 149
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%)
Query: 25 ISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 84
I+++ P SA P DN+ + ILGP S YEGGVF L++ +YP PKV F T+
Sbjct: 60 ITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR 119
Query: 85 IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET 144
IYH NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +IA + +
Sbjct: 120 IYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRA 179
Query: 145 EAVETAKEWTRLYAS 159
E A++WT+ YA+
Sbjct: 180 EHDRMARQWTKRYAT 194
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 28 NTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 87
+T+ G+SA ++ + I GP +PYEGG F L++ +P DYP + PK++F+TKI+H
Sbjct: 60 STSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWH 119
Query: 88 PNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEA 146
PNI + G ICLDILK +WSPAL IRT LLSIQA+L+ P P DP +AK +
Sbjct: 120 PNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLF 179
Query: 147 VETAKEWTRLYASD 160
V+TAK WT +A +
Sbjct: 180 VQTAKLWTETFAKE 193
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Query: 38 AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRI 96
+E ++ + LGP +PYEGG F +++ +P +YP PK++F TK+YHPNI + G I
Sbjct: 27 SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 86
Query: 97 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRL 156
CLDILK+ WSP + +++ L+S+QALL +P P+DP +A+H+ D +TA WTRL
Sbjct: 87 CLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 146
Query: 157 YAS 159
YAS
Sbjct: 147 YAS 149
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Query: 38 AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRI 96
+E ++ + LGP +PYEGG F +++ +P +YP PK++F TK+YHPNI + G I
Sbjct: 28 SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 87
Query: 97 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRL 156
CLDIL++ WSP + +++ L+S+QALL +P P+DP +A+H+ D +TA WTRL
Sbjct: 88 CLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 147
Query: 157 YASD 160
YAS+
Sbjct: 148 YASE 151
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 82/122 (67%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PG+SASP DN+ +N MI+GP+ +PYE G F+L L E+YP P V+FL++++HPN+
Sbjct: 22 PGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV 81
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
G ICLDIL+++W+P + ++L SIQ+L + PNP P + A +K +++ V+
Sbjct: 82 YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRV 141
Query: 151 KE 152
KE
Sbjct: 142 KE 143
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 78/114 (68%)
Query: 32 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 91
G+S +P+E+N+ +N +I GP +P+E G FKL + E+YP P VRFL+K++HPN+
Sbjct: 23 GVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVY 82
Query: 92 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 145
G ICLDIL+++WSP + ++L SIQ+LL PNP+ P + A+ ++ ++ E
Sbjct: 83 ADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 32 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 91
GIS +P ++N+ +N +I GP +P++GG FKL L EDYP P VRF+++++HPNI
Sbjct: 23 GISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY 82
Query: 92 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 145
G ICLDIL+++WSP + +L SIQ+LL PNP+ P + A+ + + E
Sbjct: 83 ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKRE 136
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 75/114 (65%)
Query: 32 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 91
G+S +P EDN+ + +I GP ++P+E G FKL L E+YP P V+F++K++HPN+
Sbjct: 26 GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY 85
Query: 92 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 145
G ICLDIL+++WSP + +L SIQ+LL PNP+ P + A+ ++ + E
Sbjct: 86 ADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 139
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 75/114 (65%)
Query: 32 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 91
G+S +P EDN+ + +I GP ++P+E G FKL L E+YP P V+F++K++HPN+
Sbjct: 23 GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY 82
Query: 92 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 145
G ICLDIL+++WSP + +L SIQ+LL PNP+ P + A+ ++ + E
Sbjct: 83 ADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRIC 97
++N I GP +PYEGG ++LE+ +PE YP + PKVRF+TKI+HPNI + G IC
Sbjct: 50 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 109
Query: 98 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 157
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K + +TA+ W +Y
Sbjct: 110 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 169
Query: 158 AS 159
A
Sbjct: 170 AG 171
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRIC 97
++N I GP +PYEGG ++LE+ +PE YP + PKVRF+TKI+HPNI + G IC
Sbjct: 86 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 145
Query: 98 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 157
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K + +TA+ W +Y
Sbjct: 146 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205
Query: 158 AS 159
A
Sbjct: 206 AG 207
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRIC 97
++N I GP +PYEGG ++LE+ +PE YP + PKVRF+TKI+HPNI + G IC
Sbjct: 35 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 94
Query: 98 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 157
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K + +TA+ W +Y
Sbjct: 95 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 154
Query: 158 AS 159
A
Sbjct: 155 AG 156
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRIC 97
++N I GP +PYEGG ++LE+ +PE YP + PKVRF+TKI+HPNI + G IC
Sbjct: 37 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 96
Query: 98 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 157
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K + +TA+ W +Y
Sbjct: 97 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156
Query: 158 AS 159
A
Sbjct: 157 AG 158
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRIC 97
++N I GP +PYEGG ++LE+ +PE YP + PKVRF+TKI+HPNI + G IC
Sbjct: 34 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 93
Query: 98 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 157
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K + +TA+ W +Y
Sbjct: 94 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153
Query: 158 AS 159
A
Sbjct: 154 AG 155
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 108 bits (271), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 70/109 (64%)
Query: 32 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 91
GISA P DN+ + I G + + YE +KL L P YP +AP V+FLT YHPN+D
Sbjct: 49 GISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD 108
Query: 92 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWK 140
G I LDILK+KWS +RT+LLSIQ+LL PN D PL+ + A+ WK
Sbjct: 109 TQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 76/127 (59%)
Query: 32 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 91
GI P E+++ V I GP +PY GG+F+++L L +D+P S PK FLTKI+HPN+
Sbjct: 32 GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91
Query: 92 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAK 151
G IC+++LK W+ L IR VLL+I+ LL PNP+ L++ + + E A+
Sbjct: 92 ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 151
Query: 152 EWTRLYA 158
T ++
Sbjct: 152 LLTEIHG 158
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
PGI+A P DN+ + + GP + YE +KL L P DYP P V+F T +HPN+
Sbjct: 27 PGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV 86
Query: 91 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETA 150
D+ G ICLDILK+ W+ + +RT+LLS+Q+LL PN PL+ A W +++TE +
Sbjct: 87 DQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVL 145
Query: 151 KEWTRLYASD 160
E + SD
Sbjct: 146 HEKYKTAQSD 155
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 14/134 (10%)
Query: 25 ISVNTAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 83
++ N G SA +DN Y + V+I+GP + YEGGVFK L P+DYP+ PK++F+T
Sbjct: 29 LNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT 88
Query: 84 KIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDP 130
+I+HPN+DK G +C+ IL +++W P + T+++S+ ++L+ PN D P
Sbjct: 89 EIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSP 148
Query: 131 LSDNIAKHWKADET 144
+ + AK W+ D
Sbjct: 149 ANVDAAKEWREDRN 162
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 45 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKD 103
F+VM GP+ + YEGG++K+ + LP+DYP ++P + F+ K+ HPN+D+ G +CLD++
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 104 KWSPALQIRTVL-LSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159
W+P + V + + LL+ PNP DPL+ + A D+ E KE+ +LYAS
Sbjct: 91 TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 49 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSP 107
++ P PY+ G F++E+ P +YP PK+ F TKIYHPNID+ G++CL ++ + W P
Sbjct: 40 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKP 99
Query: 108 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159
A + V+ S+ AL++ P P+ PL ++A+ + D + + A+E+T+ Y
Sbjct: 100 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 151
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 49 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSP 107
++ P PY+ G F++E+ P +YP PK+ F TKIYHPNID+ G++CL ++ + W P
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKP 97
Query: 108 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159
A + V+ S+ AL++ P P+ PL ++A+ + D + + A+E+T+ Y
Sbjct: 98 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 14/138 (10%)
Query: 32 GISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 90
G SA +DN Y + V+++GP + YEGG FK L P DYP PK++F+++I+HPNI
Sbjct: 22 GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI 81
Query: 91 DKLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 137
DK G +C+ IL D +W P + T+LLS+ ++L+ PN + P + + AK
Sbjct: 82 DKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAK 141
Query: 138 HWKADETEAVETAKEWTR 155
+ + E + + R
Sbjct: 142 MQRENYAEFKKKVAQCVR 159
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 14/142 (9%)
Query: 25 ISVNTAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 83
+++N GI A P E+N + +I+GP + +E GVF L P DYP+S PK+RF
Sbjct: 21 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 80
Query: 84 KIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 130
+++HPNI GR+C+ IL ++WSP + +LLS+ ++L+ PN +
Sbjct: 81 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 140
Query: 131 LSDNIAKHWKADETEAVETAKE 152
+ + +K W+ D + + AK+
Sbjct: 141 ANVDASKMWRDDREQFYKIAKQ 162
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 14/142 (9%)
Query: 25 ISVNTAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 83
+++N GI A P E+N + +I+GP + +E GVF L P DYP+S PK+RF
Sbjct: 18 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 77
Query: 84 KIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 130
+++HPNI GR+C+ IL ++WSP + +LLS+ ++L+ PN +
Sbjct: 78 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 137
Query: 131 LSDNIAKHWKADETEAVETAKE 152
+ + +K W+ D + + AK+
Sbjct: 138 ANVDASKMWRDDREQFYKIAKQ 159
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 14/142 (9%)
Query: 25 ISVNTAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 83
+++N GI A P E+N + +I+GP + +E GVF L P DYP+S PK+RF
Sbjct: 19 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 78
Query: 84 KIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 130
+++HPNI GR+C+ IL ++WSP + +LLS+ ++L+ PN +
Sbjct: 79 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 138
Query: 131 LSDNIAKHWKADETEAVETAKE 152
+ + +K W+ D + + AK+
Sbjct: 139 ANVDASKMWRDDREQFYKIAKQ 160
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 14/142 (9%)
Query: 25 ISVNTAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 83
+++N GI A P E+N + +I+GP + +E GVF L P DYP+S PK+RF
Sbjct: 15 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 74
Query: 84 KIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 130
+++HPNI GR+C+ IL ++WSP + +LLS+ ++L+ PN +
Sbjct: 75 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 134
Query: 131 LSDNIAKHWKADETEAVETAKE 152
+ + +K W+ D + + AK+
Sbjct: 135 ANVDASKMWRDDREQFYKIAKQ 156
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 45 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKD 103
F V GP +PYEGGV+K+ + LP+ YP +P + F+ KI+HPNID+ G +CLD++
Sbjct: 53 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112
Query: 104 KWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160
W+ + + S + LL+ PNP DPL+ + A + E + KE+ + YA++
Sbjct: 113 TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 14/138 (10%)
Query: 28 NTAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 86
++ PGI A P +E+N+ ++ +I GP +PY GVF +L P+DYP+S PK+ F I
Sbjct: 19 DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL 78
Query: 87 HPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSD 133
HPNI G +C+ IL +++WSP + +LLS+ ++LS PN + +
Sbjct: 79 HPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANI 138
Query: 134 NIAKHWKADETEAVETAK 151
+ W+ + E K
Sbjct: 139 DACILWRDNRPEFERQVK 156
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICL 98
E ++ + V I GP + YEGG FK L P DYP S P RFLTK++HPNI + G +C+
Sbjct: 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI 93
Query: 99 DILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA---KHWKAD 142
IL ++W+P +RT+LLS+ +LL+ PN P + + + + WK
Sbjct: 94 SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES 153
Query: 143 ETEAVE 148
+ + E
Sbjct: 154 KGKDRE 159
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICL 98
E ++ + V I GP + YEGG FK L P DYP S P RFLTK++HPNI + G +C+
Sbjct: 31 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI 90
Query: 99 DILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA---KHWKAD 142
IL ++W+P +RT+LLS+ +LL+ PN P + + + + WK
Sbjct: 91 SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES 150
Query: 143 ETEAVE 148
+ + E
Sbjct: 151 KGKDRE 156
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
N+ + I G +P+EGG+FKL + +DYP S PK +F ++HPN+ G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
L++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDP 131
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
N+ + I G +P+EGG+FKL + +DYP S PK +F ++HPN+ G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
L++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDP 131
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 32 GISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 86
G A P ++ N+ + I G +P+EGG+FKL + +DYP S PK +F ++
Sbjct: 24 GFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF 83
Query: 87 HPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 84 HPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 129
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 32 GISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 86
G A P ++ N+ + I G +P+EGG+FKL + +DYP S PK +F ++
Sbjct: 23 GFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF 82
Query: 87 HPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 83 HPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 32 GISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 86
G A P ++ N+ + I G +P+EGG+FKL + +DYP S PK +F ++
Sbjct: 25 GFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF 84
Query: 87 HPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 85 HPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 130
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
N+ + I G +P+EGG+FKL + +DYP S PK +F ++HPN+ G +CL I
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
L++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEPNIQDP 130
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
N+ + I G +P+EGG+FKL + +DYP S PK +F ++HPN+ G +CL I
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
L++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 102 LEEDKDWRPAITIKQILLGIQELLNEPNIQDP 133
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSP 107
+I+ P + Y G L E YP+ PKV L KI+HPNID G +CL+IL++ WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 108 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASDG 161
AL +++++ + L PNP+DPL+ + AK E E E RL S G
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEA----VRLTMSGG 177
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 40 DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICL 98
D + F V GP +PYE G + L + LP DYP +P + F +I HPN+D + G +CL
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 99 DILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 157
D++ W+P Q+ + + + LL PNP DPL+ A AD +E +
Sbjct: 95 DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTH 154
Query: 158 AS 159
A+
Sbjct: 155 AT 156
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
N+ + I G +P+EGG+FKL + +DYP S PK +F ++HP + G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
L++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDP 131
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 45 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK 104
+ V I G ++ +EGG++KL + PE+YP PK RF ++HPN+ G +CL IL ++
Sbjct: 47 WKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEE 106
Query: 105 --WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 145
W PA+ I+ +LL IQ LL PN P +K D+ E
Sbjct: 107 EGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVE 149
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 32 GISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 86
G A P ++ N+ + I G +P+EGG+FKL + +DYP S PK +F ++
Sbjct: 26 GFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF 85
Query: 87 HPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN P
Sbjct: 86 HPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSP 131
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
N+ + I G +P+EGG+FKL + +DYP S PK +F ++HPN+ G +CL I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
L++ W PA+ I+ +LL IQ LL+ PN P
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQAP 131
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 33 ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 92
IS S +D + + +++ P + Y+ G F + + YP PKV+ T +YHPNID
Sbjct: 26 ISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDL 83
Query: 93 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 152
G +CL+IL++ W P L I +++ +Q L PNP+DPL+ EA E +
Sbjct: 84 EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN-----------KEAAEVLQN 132
Query: 153 WTRLYASD 160
RL+ +
Sbjct: 133 NRRLFEQN 140
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
N+ + I G +P+EGG+FKL + +DYP S PK +F ++HPN+ G + L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
L++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 32 GISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 86
G A P ++ N+ + I G +P+EGG+FKL + +DYP S PK +F ++
Sbjct: 23 GFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF 82
Query: 87 HPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 130
HPN+ G + L IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 83 HPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSP 107
+++ P + Y+ G F + + YP PKV+ T +YHPNID G + L+IL++ W P
Sbjct: 59 LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKP 118
Query: 108 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160
L I +++ +Q L PNP+DPL+ EA E + RL+ +
Sbjct: 119 VLTINSIIYGLQYLFLEPNPEDPLN-----------KEAAEVLQNNRRLFEQN 160
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 49 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSP 107
+L P Q PY F L + P +YP P ++F TKIYHPN+D+ G+ICL I+ + W P
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 96
Query: 108 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160
+ VL ++ L++ PN +PL ++A + + A+E+T + D
Sbjct: 97 CTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 149
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK--- 104
+ + P + Y+GG F+ E +P+ Y M PKV+ LTKI+HPNI + G ICL +L++
Sbjct: 49 LTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSID 108
Query: 105 ---WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160
W+P ++ V+ + +L + N DDPL+ A+H D+ + ++ + YA
Sbjct: 109 GTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYARS 168
Query: 161 G 161
G
Sbjct: 169 G 169
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 49 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSP 107
+L P Q PY F L + P +YP P ++F TKIYHPN+D+ G+ICL I+ + W P
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 99
Query: 108 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160
+ VL ++ L++ PN +PL ++A + + A+E+T + D
Sbjct: 100 CTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 152
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK--- 104
+ + P + Y+GG F+ E +P+ Y M PKV+ LTKI+HPNI + G ICL +L++
Sbjct: 49 LTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSID 108
Query: 105 ---WSPALQIRTVLLSIQALLS-APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158
W+P ++ V+ + +L + N DDPL+ A+H D+ + ++ + YA
Sbjct: 109 GTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
+++ + I G + + GGV+ + + P +YP PKV+F YHPN+ G ICL I
Sbjct: 39 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 98
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 145
L + W PA+ ++ ++L +Q LL +PNP+ P + + + ++ E
Sbjct: 99 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAE 145
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDI 100
+++ + I G + + GGV+ + + P +YP PKV+F YHPN+ G ICL I
Sbjct: 37 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 96
Query: 101 LKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETE 145
L + W PA+ ++ ++L +Q LL +PNP+ P + + + ++ E
Sbjct: 97 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAE 143
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 28 NTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 87
N GI+A P ++M + V I G S ++G VF+L + +Y + P V+F+T +H
Sbjct: 38 NNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH 97
Query: 88 PNID-KLGRICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET 144
PN+D G+ C+D L +KW+ + ++LL++Q +LS P ++P++ A+ DE+
Sbjct: 98 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDES 157
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL-TKIYHPNIDK-LGRI 96
E ++ + +I GPS +PYE F++ + +P YPM+ PK+ F+ I H N+ G I
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEI 103
Query: 97 CLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVE 148
CL+ILK ++W+P + + ++ LL P D PL +I + + A +
Sbjct: 104 CLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL-TKIYHPNIDK-LGRI 96
E ++ + +I GPS +PYE F++ + +P YPM+ PK+ F+ I H N+ G I
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEI 103
Query: 97 CLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVE 148
CL+ILK ++W+P + + ++ LL P D PL +I + + A +
Sbjct: 104 CLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL-TKIYHPNIDK-LGRI 96
E ++ + +I GPS +PYE F++ + +P YPM+ PK+ F+ I H N+ G I
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEI 103
Query: 97 CLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVE 148
CL+ILK ++W+P + + ++ LL P D PL +I + + A +
Sbjct: 104 CLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQ 156
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH-----PNIDKL 93
E+ + V+I GP+ +PY G F+ +++ P+DYP S P V T H PN+
Sbjct: 106 EERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYND 165
Query: 94 GRICLDIL-------KDKWSPAL-QIRTVLLSIQALLSAPNP 127
G++CL IL ++KW+P VL+S+Q+L+ P
Sbjct: 166 GKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 40 DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-IYHPNIDKLGRICL 98
+N+R + V +G + Y V+KL++ P+DYP+ P V FL K H ++ G ICL
Sbjct: 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 92
Query: 99 DILKDKWSPALQIRTVLLSIQALLSA 124
+L D ++P+L I ++LSI ++LS+
Sbjct: 93 SLLGDDYNPSLSISGLVLSIISMLSS 118
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 41 NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK-IYHPNIDKLGRICLD 99
N+R + V +G + Y V+K+++ P++YP+ P V FL K H ++ G ICL
Sbjct: 48 NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLS 107
Query: 100 ILKDKWSPALQIRTVLLSIQALLSA 124
+L D ++P+L I ++LSI ++LS+
Sbjct: 108 VLGDDYNPSLSISGLILSIISMLSS 132
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 57 YEGGVFKLELFLPEDYPMSAPKVRFLTK--IYHPNIDKLGRICLDILKDKWSPALQIRTV 114
YEG F+L YP +P+V F + HP++ G ICL IL + WSPAL +++V
Sbjct: 68 YEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSV 127
Query: 115 LLSIQALLS 123
LSI ++LS
Sbjct: 128 CLSIISMLS 136
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 25 ISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 84
I + P I A P N+ ++ ++ GP +PYEGG + +L P ++P P + +T
Sbjct: 26 IKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT- 84
Query: 85 IYHPN--IDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 127
PN R+CL D D W+PA + T+L + + + P
Sbjct: 85 ---PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 28 NTAPGIS---ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 84
N + G+S S + + ++ I G + +E ++ L +F ++YP S P V+F TK
Sbjct: 41 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 85 IYHPNIDKLGRIC---LDILKDKWSPALQIRTVLLSI-QALLSAPNPDDP 130
I +D GR+ L ILK+ W+ I T+L+S+ Q +LS+ N P
Sbjct: 101 IEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANKRLP 149
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 28 NTAPGIS---ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 84
N + G+S S + + ++ I G + +E ++ L +F ++YP S P V+F TK
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 85 IYHPNIDKLGRIC---LDILKDKWSPALQIRTVLLSI-QALLSAPNPDDP 130
I +D GR+ L ILK+ W+ I T+L+S+ Q +LS+ N P
Sbjct: 97 IEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANKRLP 145
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 49 ILGPSQSPYEGG--VFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWS 106
+ P+ S Y G ++L + +DYP P VRF+T +Y P + G IC ++ D W+
Sbjct: 56 VKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWT 115
Query: 107 PALQIRTVL 115
P V+
Sbjct: 116 PDQHASDVI 124
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 42 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDI 100
M +N ILGP S +E ++ L + +YP S PKV F++KI P ++ G + D
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 101 --LKDKWSPALQIRTVLLSIQALLSAP 125
L+D W A + T+LL ++ ++ P
Sbjct: 99 HTLRD-WKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 42 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDI 100
M +N ILGP S +E ++ L + +YP S PKV F++KI P ++ G + D
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 101 --LKDKWSPALQIRTVLLSIQALLSAP 125
L+D W A + T+LL ++ ++ P
Sbjct: 98 HTLRD-WKRAYTMETLLLDLRKEMATP 123
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC----LDILKD 103
MI+GP ++ YE ++ L++ YP + P VRF+TKI I+ + + +L
Sbjct: 49 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 107
Query: 104 KWSPALQIRTVLLSIQALL 122
KW + I+ VL ++ L+
Sbjct: 108 KWQNSYSIKVVLQELRRLM 126
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI----CLDILKD 103
MILGP ++ YE ++ L++ YP + P VRF+TKI ++ + + +L
Sbjct: 46 MILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 104
Query: 104 KWSPALQIRTVLLSIQALL 122
KW + I+ VL ++ L+
Sbjct: 105 KWQNSYSIKVVLQELRRLM 123
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC----LDILKD 103
MI+GP ++ YE ++ L++ YP + P VRF+TKI I+ + + +L
Sbjct: 43 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 101
Query: 104 KWSPALQIRTVLLSIQALL 122
KW + I+ VL ++ L+
Sbjct: 102 KWQNSYSIKVVLQELRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC----LDILKD 103
MI+GP ++ YE ++ L++ YP + P VRF+TKI I+ + + +L
Sbjct: 54 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 112
Query: 104 KWSPALQIRTVLLSIQALL 122
KW + I+ VL ++ L+
Sbjct: 113 KWQNSYSIKVVLQELRRLM 131
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC----LDILKD 103
MI+GP ++ YE ++ L++ YP + P VRF+TKI I+ + + +L
Sbjct: 44 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 102
Query: 104 KWSPALQIRTVLLSIQALL 122
KW + I+ VL ++ L+
Sbjct: 103 KWQNSYSIKVVLQELRRLM 121
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI----CLDILKD 103
MI+GP ++ YE ++ L++ YP + P VRF+TKI ++ + + +L
Sbjct: 74 MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 132
Query: 104 KWSPALQIRTVLLSIQALL 122
KW + I+ VL ++ L+
Sbjct: 133 KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 48 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI----CLDILKD 103
MI+GP ++ YE ++ L++ YP + P VRF+TKI ++ + + +L
Sbjct: 64 MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 122
Query: 104 KWSPALQIRTVLLSIQALL 122
KW + I+ VL ++ L+
Sbjct: 123 KWQNSYSIKVVLQELRRLM 141
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 37 PAE--DNMRYFNVMILGPSQSPYEGGVFKLELFLPED 71
PAE D +R + V I+GP +P GG+ L + L ++
Sbjct: 85 PAETLDLIREYRVAIMGPLTTPVGGGIRSLNVALRQE 121
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 63 KLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 93
K+ P+D +VR + K++HPNI +L
Sbjct: 63 KIRQINPKDVERIKTEVRLMKKLHHPNIARL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,032,931
Number of Sequences: 62578
Number of extensions: 193927
Number of successful extensions: 559
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 119
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)