Query 031320
Match_columns 161
No_of_seqs 126 out of 1146
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 12:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 7.6E-54 1.6E-58 311.1 15.0 145 2-160 4-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.5E-52 3.3E-57 310.0 16.9 145 1-159 7-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.2E-50 2.6E-55 301.8 18.4 147 1-161 4-150 (152)
4 PLN00172 ubiquitin conjugating 100.0 1.5E-49 3.3E-54 294.6 18.2 144 2-159 4-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 1.4E-49 3.1E-54 282.0 14.4 144 2-159 7-150 (152)
6 KOG0418 Ubiquitin-protein liga 100.0 4.1E-45 9E-50 273.3 14.0 149 1-160 5-154 (200)
7 KOG0425 Ubiquitin-protein liga 100.0 1.6E-44 3.4E-49 263.1 15.4 134 25-158 17-164 (171)
8 cd00195 UBCc Ubiquitin-conjuga 100.0 6.6E-44 1.4E-48 262.4 16.7 140 1-154 1-141 (141)
9 PF00179 UQ_con: Ubiquitin-con 100.0 3.9E-44 8.4E-49 263.2 14.2 138 3-154 1-140 (140)
10 smart00212 UBCc Ubiquitin-conj 100.0 8.4E-43 1.8E-47 257.6 18.0 143 2-158 1-145 (145)
11 KOG0424 Ubiquitin-protein liga 100.0 5.6E-43 1.2E-47 251.7 14.4 137 24-160 15-158 (158)
12 KOG0426 Ubiquitin-protein liga 100.0 7.3E-42 1.6E-46 242.9 13.8 144 1-158 6-163 (165)
13 KOG0421 Ubiquitin-protein liga 100.0 2.7E-41 5.9E-46 243.1 11.7 140 2-156 32-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 5.1E-39 1.1E-43 230.1 13.9 144 2-160 5-150 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 4.8E-38 1E-42 231.9 12.2 129 32-160 19-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 2.5E-35 5.5E-40 217.8 11.5 136 24-160 37-176 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 4.5E-36 9.8E-41 222.1 7.0 146 1-160 12-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 3.7E-30 8E-35 182.9 11.8 115 2-131 18-134 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 7E-28 1.5E-32 184.1 12.2 111 1-127 7-120 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 9.4E-25 2E-29 167.5 13.9 132 25-157 31-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 2.1E-22 4.6E-27 156.9 8.6 107 1-124 13-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 1.5E-15 3.2E-20 137.7 6.7 102 23-124 861-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1.8E-14 3.9E-19 130.7 10.4 109 3-125 286-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 1E-13 2.3E-18 99.3 8.1 109 3-124 9-123 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.6 1.4E-07 3E-12 68.7 7.6 67 58-124 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.5 2.9E-07 6.2E-12 64.6 6.1 72 63-134 14-89 (122)
27 PF05743 UEV: UEV domain; Int 98.3 2.3E-06 5E-11 61.4 6.9 78 42-124 32-117 (121)
28 KOG2391 Vacuolar sorting prote 97.7 0.00018 3.8E-09 59.5 7.6 81 41-126 51-139 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.0 0.092 2E-06 37.7 8.8 90 31-123 12-120 (122)
30 PF08694 UFC1: Ubiquitin-fold 95.8 0.04 8.7E-07 40.5 6.5 102 2-115 27-135 (161)
31 PF14457 Prok-E2_A: Prokaryoti 94.9 0.045 9.8E-07 41.2 4.2 61 64-124 57-126 (162)
32 PF05773 RWD: RWD domain; Int 94.7 0.077 1.7E-06 36.3 4.9 47 39-85 26-74 (113)
33 smart00591 RWD domain in RING 94.4 0.98 2.1E-05 30.5 10.2 27 58-84 39-65 (107)
34 KOG3357 Uncharacterized conser 93.6 0.19 4E-06 36.5 5.0 59 50-108 58-128 (167)
35 PF09765 WD-3: WD-repeat regio 87.7 1.5 3.2E-05 36.1 5.5 84 2-122 102-186 (291)
36 KOG0309 Conserved WD40 repeat- 86.5 3.2 7E-05 38.5 7.4 80 4-84 402-491 (1081)
37 PF14460 Prok-E2_D: Prokaryoti 75.8 4.3 9.2E-05 30.7 3.8 42 82-126 89-134 (175)
38 TIGR03737 PRTRC_B PRTRC system 72.6 6.4 0.00014 31.3 4.1 38 83-124 131-172 (228)
39 KOG4018 Uncharacterized conser 65.9 5.6 0.00012 31.2 2.5 20 61-80 50-69 (215)
40 cd07981 TAF12 TATA Binding Pro 63.3 23 0.00049 22.7 4.7 44 117-160 6-49 (72)
41 PF06113 BRE: Brain and reprod 62.2 22 0.00047 29.9 5.4 63 44-118 55-120 (333)
42 PF06113 BRE: Brain and reprod 58.5 32 0.00069 28.9 5.8 27 60-87 306-332 (333)
43 COG1222 RPT1 ATP-dependent 26S 58.2 13 0.00027 31.9 3.4 37 5-55 160-196 (406)
44 smart00340 HALZ homeobox assoc 51.5 11 0.00024 21.9 1.4 14 2-15 22-35 (44)
45 cd00421 intradiol_dioxygenase 47.8 31 0.00067 25.1 3.8 26 58-83 64-90 (146)
46 PF03847 TFIID_20kDa: Transcri 47.0 59 0.0013 20.7 4.5 44 117-160 4-47 (68)
47 cd03457 intradiol_dioxygenase_ 45.6 33 0.00073 26.3 3.8 26 58-83 85-110 (188)
48 KOG3696 Aspartyl beta-hydroxyl 41.8 53 0.0011 27.5 4.5 49 46-95 274-328 (334)
49 KOG0727 26S proteasome regulat 39.6 40 0.00086 27.9 3.5 37 5-55 164-200 (408)
50 KOG0743 AAA+-type ATPase [Post 38.5 23 0.0005 31.0 2.1 36 2-55 211-246 (457)
51 cd03459 3,4-PCD Protocatechuat 37.2 56 0.0012 24.3 3.8 26 58-83 71-101 (158)
52 KOG0177 20S proteasome, regula 36.0 17 0.00036 28.2 0.8 30 93-122 135-164 (200)
53 PF14798 Ca_hom_mod: Calcium h 36.0 27 0.00059 28.1 2.0 34 128-161 206-240 (251)
54 cd05845 Ig2_L1-CAM_like Second 34.4 1.1E+02 0.0024 20.6 4.6 26 57-84 16-41 (95)
55 PF09606 Med15: ARC105 or Med1 33.2 14 0.00031 34.6 0.0 26 61-86 715-740 (799)
56 PF14135 DUF4302: Domain of un 32.5 1.3E+02 0.0028 23.6 5.4 66 2-93 12-102 (235)
57 KOG0662 Cyclin-dependent kinas 32.4 48 0.001 26.0 2.8 55 74-128 167-225 (292)
58 smart00803 TAF TATA box bindin 31.5 1.4E+02 0.0029 18.8 4.8 41 119-160 9-49 (65)
59 PF03366 YEATS: YEATS family; 29.2 1.7E+02 0.0038 19.3 5.0 43 43-87 2-44 (84)
60 PF00845 Gemini_BL1: Geminivir 28.5 1.1E+02 0.0025 24.7 4.3 48 40-88 100-156 (276)
61 KOG4445 Uncharacterized conser 27.6 74 0.0016 26.6 3.2 25 60-84 45-69 (368)
62 PF04881 Adeno_GP19K: Adenovir 27.1 1E+02 0.0022 22.4 3.5 30 29-58 32-63 (139)
63 PF11123 DNA_Packaging_2: DNA 25.4 29 0.00063 22.9 0.4 39 2-40 17-56 (82)
64 PF12018 DUF3508: Domain of un 25.0 1E+02 0.0022 25.0 3.7 28 131-158 239-266 (281)
65 TIGR02423 protocat_alph protoc 24.4 1.1E+02 0.0025 23.5 3.7 26 58-83 95-125 (193)
66 KOG1047 Bifunctional leukotrie 23.8 75 0.0016 28.8 2.8 29 55-84 248-279 (613)
67 PF14455 Metal_CEHH: Predicted 22.6 2.2E+02 0.0048 21.4 4.6 69 13-85 6-77 (177)
68 cd03463 3,4-PCD_alpha Protocat 21.9 1.4E+02 0.0031 22.8 3.7 25 58-82 91-120 (185)
69 PF00779 BTK: BTK motif; Inte 20.4 39 0.00084 18.4 0.2 15 85-99 2-17 (32)
70 PHA00425 DNA packaging protein 20.4 46 0.00099 22.2 0.6 39 2-40 19-58 (88)
71 KOG2851 Eukaryotic-type DNA pr 20.3 2.2E+02 0.0048 24.4 4.7 29 93-121 336-369 (412)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-54 Score=311.08 Aligned_cols=145 Identities=59% Similarity=0.984 Sum_probs=141.7
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
+||.+|++++.++ +++|+++.++++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|
T Consensus 4 ~RI~kE~~~l~~d--------------p~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F 69 (148)
T KOG0417|consen 4 KRIIKELQDLLRD--------------PPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRF 69 (148)
T ss_pred HHHHHHHHHHhcC--------------CCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEe
Confidence 5999999988877 88999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|+||||||+.+|.||+|+|++.|+|+++|..+|.+|.++|.+||+++|++.++|.+|++|+.+|.++||+|+.+||++
T Consensus 70 ~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 70 LTKIYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred ecccccCCcCccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-52 Score=309.98 Aligned_cols=145 Identities=48% Similarity=0.937 Sum_probs=141.7
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCC-CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
.+||++|++++++. +++++++.|.++ |+++|+++|.||++||||||+|++.|.||++||++||+|
T Consensus 7 ~~RL~kE~~~l~~~--------------~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv 72 (153)
T COG5078 7 LKRLLKELKKLQKD--------------PPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKV 72 (153)
T ss_pred HHHHHHHHHHHhcC--------------CCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCee
Confidence 37999999999998 889999999887 999999999999999999999999999999999999999
Q ss_pred EEeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 80 RFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 80 ~f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
+|.|+|||||||++|.||+++|.+.|+|++++++||.+|+++|.+||+++|+|.|||++|++|+++|.++||+|+++||+
T Consensus 73 ~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 73 RFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred eeccCCcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.2e-50 Score=301.84 Aligned_cols=147 Identities=61% Similarity=1.082 Sum_probs=143.0
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.|||++|+++++++ +++|+.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+
T Consensus 4 ~kRl~~E~~~l~~~--------------~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~ 69 (152)
T PTZ00390 4 SKRIEKETQNLAND--------------PPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVR 69 (152)
T ss_pred HHHHHHHHHHHHhC--------------CCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEE
Confidence 38999999999987 7889999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
|.|+||||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||++
T Consensus 70 F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 70 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred EecCCeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 031320 161 G 161 (161)
Q Consensus 161 ~ 161 (161)
+
T Consensus 150 ~ 150 (152)
T PTZ00390 150 N 150 (152)
T ss_pred c
Confidence 4
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.5e-49 Score=294.55 Aligned_cols=144 Identities=49% Similarity=0.905 Sum_probs=141.0
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
+||++|+++++++ +++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|
T Consensus 4 ~Rl~kE~~~l~~~--------------~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f 69 (147)
T PLN00172 4 KRIQKEHKDLLKD--------------PPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQF 69 (147)
T ss_pred HHHHHHHHHHHhC--------------CCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEE
Confidence 7999999999987 78899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
.|+||||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 70 ~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 70 TTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred ecCcccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-49 Score=281.96 Aligned_cols=144 Identities=40% Similarity=0.756 Sum_probs=140.8
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++|+++++++ ++.|++..|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|
T Consensus 7 rrLmrDfkrlqed--------------pp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrF 72 (152)
T KOG0419|consen 7 RRLMRDFKRLQED--------------PPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRF 72 (152)
T ss_pred HHHHHHHHHhhcC--------------CCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEe
Confidence 8999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
.+.+||||||++|.+|+|+|...|+|.|++.+||.+|++||.+||+++|+|.+||++|.+|+.+|.+++++.+.+...
T Consensus 73 vs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~ 150 (152)
T KOG0419|consen 73 VSKMFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWS 150 (152)
T ss_pred eeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988654
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-45 Score=273.29 Aligned_cols=149 Identities=42% Similarity=0.791 Sum_probs=141.2
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
++||++|++++.++.- =...|+.+...++|+.+.++.|.||+|||||||+|.+.|++|++|||+||+|+
T Consensus 5 ~~ri~~e~k~v~~~~e-----------isq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~ 73 (200)
T KOG0418|consen 5 FKRINREQKEVLDDPE-----------ISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK 73 (200)
T ss_pred HHHHHHHHHHhccChh-----------hhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence 5799999999988830 02578999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccC-CCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 81 FLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 81 f~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
|.|+||||||.+ +|.||+|++.+.|++++|++.+|++|+++|..|++.+|.+..+|++|.+|++.|.++||.|+..||+
T Consensus 74 F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 74 FITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred eeeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 999999999965 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 031320 160 D 160 (161)
Q Consensus 160 ~ 160 (161)
+
T Consensus 154 ~ 154 (200)
T KOG0418|consen 154 G 154 (200)
T ss_pred C
Confidence 6
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=263.08 Aligned_cols=134 Identities=33% Similarity=0.723 Sum_probs=126.4
Q ss_pred HhhCCCCCeEEEeCC-CCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeeccccccccCCCceEeccCC-
Q 031320 25 ISVNTAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK- 102 (161)
Q Consensus 25 l~~~~~~~~~~~p~~-~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnV~~~G~ic~~~l~- 102 (161)
|+.++..|+.+...+ .|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|.+||||||++|.+|+++|.
T Consensus 17 L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~ 96 (171)
T KOG0425|consen 17 LQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHP 96 (171)
T ss_pred HhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecC
Confidence 344489999999865 599999999999999999999999999999999999999999999999999999999999994
Q ss_pred ------------CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 103 ------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 103 ------------~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
+.|.|..|+++||++|.+||.+||.++|+|-+||+.|++|+++|.++++.+|.+.-
T Consensus 97 pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~ 164 (171)
T KOG0425|consen 97 PGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQ 164 (171)
T ss_pred CCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999998753
No 8
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=6.6e-44 Score=262.36 Aligned_cols=140 Identities=51% Similarity=0.950 Sum_probs=135.8
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++|+++++++ +++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus 1 ~~Rl~~E~~~l~~~--------------~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~ 66 (141)
T cd00195 1 SKRLQKELKDLKKD--------------PPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVR 66 (141)
T ss_pred CchHHHHHHHHHhC--------------CCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEE
Confidence 69999999999988 7789999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCC-CCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 154 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~-W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~ 154 (161)
|.|+++||||+.+|.||++++... |+|++++++||.+|+++|.+|+.++|+|.+||++|++|+++|.++|++|+
T Consensus 67 f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 67 FVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred EeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999999999999999999766 99999999999999999999999999999999999999999999999985
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.9e-44 Score=263.21 Aligned_cols=138 Identities=52% Similarity=0.979 Sum_probs=127.7
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCC-CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 3 YVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 3 r~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
||++|+++++++ ++.|+.+.+.++ |+.+|+++|.||++|||+||+|+++|.||++||++||+|+|
T Consensus 1 Rl~~E~~~l~~~--------------~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f 66 (140)
T PF00179_consen 1 RLQKELKELQKN--------------PPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRF 66 (140)
T ss_dssp HHHHHHHHHHHS--------------HTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEE
T ss_pred CHHHHHHHHhhC--------------CCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccc
Confidence 899999988887 889999999886 99999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCC-CCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 031320 82 LTKIYHPNIDKLGRICLDILKD-KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 154 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~-~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~ 154 (161)
.|+||||||+.+|.||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 67 ~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 67 LTPIFHPNIDENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp SSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred ccccccccccccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 9999999999999999999974 599999999999999999999999999999999999999999999999984
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=8.4e-43 Score=257.60 Aligned_cols=143 Identities=52% Similarity=0.942 Sum_probs=138.2
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCC-CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+||++|+++++++ +++|+.+.+.++ |+++|+++|.||++|||+||+|++.|.||++||.+||+|+
T Consensus 1 ~Rl~~E~~~~~~~--------------~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~ 66 (145)
T smart00212 1 KRLLKELKELLKD--------------PPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVK 66 (145)
T ss_pred ChHHHHHHHHHhC--------------CCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEE
Confidence 6999999999988 678999998775 9999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCC-CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 81 FLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~-~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
|.++++||||+++|.||++.+. ++|+|++++++||.+|+++|.+|+.++|+|.+||++|++|+++|.++|++|+++++
T Consensus 67 f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 67 FITKIYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred EeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998 89999999999999999999999999999999999999999999999999999985
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-43 Score=251.67 Aligned_cols=137 Identities=33% Similarity=0.640 Sum_probs=129.6
Q ss_pred HHhhCCCCCeEEEeCC-----CCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeeccccccccCCCceEe
Q 031320 24 VISVNTAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICL 98 (161)
Q Consensus 24 ~l~~~~~~~~~~~p~~-----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnV~~~G~ic~ 98 (161)
.+.++.+.|+++.|.. .|++.|.+.|.|++||+||||.|.+++.||++||.+||+++|.+++||||||++|.||+
T Consensus 15 ~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcL 94 (158)
T KOG0424|consen 15 KWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCL 94 (158)
T ss_pred HHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEeh
Confidence 3455599999999854 47899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC--CCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 99 DILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 99 ~~l~~~--W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
++|.+. |+|+.||.+||..|++||.+||+.+|+|.||...|..|+.+|.++||.++++||+.
T Consensus 95 siL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 95 SILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred hhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 999754 99999999999999999999999999999999999999999999999999999963
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-42 Score=242.94 Aligned_cols=144 Identities=35% Similarity=0.679 Sum_probs=137.3
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeC-CCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
+|||++|++++-.+ +|+|+.+.|. ++|++.|.+.|.||+||+|+||+|..++.||.+||.+||++
T Consensus 6 lkRLm~EykqLt~~--------------~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm 71 (165)
T KOG0426|consen 6 LKRLMAEYKQLTLN--------------PPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKM 71 (165)
T ss_pred HHHHHHHHHHHccC--------------CCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCce
Confidence 48999999998888 9999999995 67899999999999999999999999999999999999999
Q ss_pred EEeeccccccccCCCceEeccCC-------------CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHH
Q 031320 80 RFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEA 146 (161)
Q Consensus 80 ~f~t~i~HPnV~~~G~ic~~~l~-------------~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f 146 (161)
+|...+|||||+++|+||+++|. +.|+|..+++.||.++-+||.+||-++++|.+|+.++++|+++|
T Consensus 72 ~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef 151 (165)
T KOG0426|consen 72 RFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEF 151 (165)
T ss_pred eeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHH
Confidence 99999999999999999999984 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 031320 147 VETAKEWTRLYA 158 (161)
Q Consensus 147 ~~~a~~~~~~~a 158 (161)
.+.||..+.|.-
T Consensus 152 ~~i~~~lvrKtL 163 (165)
T KOG0426|consen 152 EKIAKRLVRKTL 163 (165)
T ss_pred HHHHHHHHHHhh
Confidence 999999998863
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-41 Score=243.05 Aligned_cols=140 Identities=42% Similarity=0.725 Sum_probs=133.0
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
+||++||-.+.-. ..+|+++.|+++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|
T Consensus 32 KRLq~ELm~Lmms--------------~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkF 97 (175)
T KOG0421|consen 32 KRLQSELMGLMMS--------------NTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKF 97 (175)
T ss_pred HHHHHHHHHHHhc--------------CCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEe
Confidence 5788888777666 77899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRL 156 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~ 156 (161)
+|+.||||||..|.||+|+|.+.|+..|+++.||.+|+++|-+||.++|+|..||+++. |.++|++.+.+.-++
T Consensus 98 ltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 98 LTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred eccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999998 999999999887654
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-39 Score=230.13 Aligned_cols=144 Identities=33% Similarity=0.705 Sum_probs=134.1
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeE-EEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGIS-ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~-~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
|||.+||.++++..+ ..+. +..+++|+..|.+.|. |.+-||..|.|+++|.||.+|||+||+|.
T Consensus 5 ~Rl~kEL~dl~~~~~--------------~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~ 69 (153)
T KOG0422|consen 5 RRLRKELADLQKNKM--------------KFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIK 69 (153)
T ss_pred HHHHHHHHHHHhccH--------------HHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeee
Confidence 899999999999853 2221 4456889999999999 89999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccC-CCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 81 FLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l-~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
|.|.|||||||+.|.+|+.++ .++|.|++.+.++|++|.+++.+|+++.|++.|+|..|..|+..|.++|.+|++||+.
T Consensus 70 f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 70 FKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred eeeeeccCCCCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 999999999999999999988 5899999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 031320 160 D 160 (161)
Q Consensus 160 ~ 160 (161)
.
T Consensus 150 ~ 150 (153)
T KOG0422|consen 150 K 150 (153)
T ss_pred c
Confidence 4
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-38 Score=231.89 Aligned_cols=129 Identities=39% Similarity=0.792 Sum_probs=123.1
Q ss_pred CeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeeccccccccC-CCceEeccCCCCCCcccC
Q 031320 32 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK-LGRICLDILKDKWSPALQ 110 (161)
Q Consensus 32 ~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~ 110 (161)
+..+...+++.++++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+. +|.||++.+...|+|.+.
T Consensus 19 ~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yD 98 (189)
T KOG0416|consen 19 DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYD 98 (189)
T ss_pred CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHH
Confidence 5667778888999999999999999999999999999999999999999999999999986 899999999999999999
Q ss_pred HHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 111 IRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 111 i~~il~~-l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
+..|+.. |-.||..||+.+|+|.+||.+|..++++|.+++|++++|||+.
T Consensus 99 L~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 99 LVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred HHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 9999976 6889999999999999999999999999999999999999963
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-35 Score=217.83 Aligned_cols=136 Identities=33% Similarity=0.672 Sum_probs=122.5
Q ss_pred HHhhCCCCCeEEEe--CCCCcc--eEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeeccccccccCCCceEec
Q 031320 24 VISVNTAPGISASP--AEDNMR--YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLD 99 (161)
Q Consensus 24 ~l~~~~~~~~~~~p--~~~n~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnV~~~G~ic~~ 99 (161)
.+..+.|+++++.- ..+++. +..++|. |..+.|.||.|.|.+.+|+.||+.||+|+|+|.|||||||.+|.||++
T Consensus 37 i~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLn 115 (184)
T KOG0420|consen 37 ILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLN 115 (184)
T ss_pred hhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHH
Confidence 44455777777542 234444 5999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 100 ILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 100 ~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
+|++.|+|+.++.+|+.+|+++|.+|+++||+|.+||+++.+|++.|...||.....++-+
T Consensus 116 ILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~ 176 (184)
T KOG0420|consen 116 ILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVG 176 (184)
T ss_pred HHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccC
Confidence 9999999999999999999999999999999999999999999999999999988877644
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-36 Score=222.12 Aligned_cols=146 Identities=36% Similarity=0.666 Sum_probs=140.1
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
||-+++||+.+... ||.|+.|.+.++|++...+.|.||.||||++|.|++.+.+..+||.+||+-+
T Consensus 12 ik~~~kEl~~l~~~--------------PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgY 77 (223)
T KOG0423|consen 12 IKQLAKELKSLDES--------------PPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGY 77 (223)
T ss_pred HHHHHHHHHhcccC--------------CCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcce
Confidence 46677788777666 9999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
|+|+||||||-.||.||...|...|+|+..|..||..|.++|..|++++.+|.+|.++..++.++|.+.||.++.-||+.
T Consensus 78 FlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 78 FLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eeeeeccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=182.91 Aligned_cols=115 Identities=32% Similarity=0.642 Sum_probs=106.1
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
+||++||.+.+.+ +|.|+... ..+|+.+|.+.+.|.+||.|+|.+|.+.+.||+.||++.|.|.|
T Consensus 18 ~RLqKEl~e~q~~--------------pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF 82 (161)
T KOG0427|consen 18 NRLQKELSEWQNN--------------PPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMF 82 (161)
T ss_pred HHHHHHHHHHhcC--------------CCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEE
Confidence 6899999888777 99999888 77899999999999999999999999999999999999999999
Q ss_pred eecc-ccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcC-CCCCCcc
Q 031320 82 LTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA-PNPDDPL 131 (161)
Q Consensus 82 ~t~i-~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~-p~~~~p~ 131 (161)
..++ .||+||.||.||+++|.+.|+|++++.+|..+|.+||.+ ..-..|.
T Consensus 83 ~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 83 VGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred ecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 9987 799999999999999999999999999999999999987 3334444
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7e-28 Score=184.10 Aligned_cols=111 Identities=24% Similarity=0.623 Sum_probs=101.4
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
++||++|.+.+.++ |.+++.+.|.++|+.+|+.+|.||+||||+||.|+.+|.||++||++||.|+
T Consensus 7 ~kRl~keY~~l~k~--------------Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~ 72 (244)
T KOG0894|consen 7 VKRLQKEYRALCKD--------------PVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAIT 72 (244)
T ss_pred HHHHHHHHHHHHhC--------------CchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeE
Confidence 47999999988888 8999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCC---CCCCcccCHHHHHHHHHHHhcCCCC
Q 031320 81 FLTKIYHPNIDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNP 127 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~---~~W~p~~~i~~il~~l~~ll~~p~~ 127 (161)
+.|| +..+-.+.++|+++.. +.|+|+|++.+||.+|.++|.+-.+
T Consensus 73 MiTP--NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 73 MITP--NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred EECC--CCceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 9997 4445556899998884 8999999999999999999987443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.4e-25 Score=167.51 Aligned_cols=132 Identities=23% Similarity=0.395 Sum_probs=120.2
Q ss_pred HhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCC--CCCeEEEeeccccccccC-CCceEeccC
Q 031320 25 ISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPM--SAPKVRFLTKIYHPNIDK-LGRICLDIL 101 (161)
Q Consensus 25 l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~--~pP~v~f~t~i~HPnV~~-~G~ic~~~l 101 (161)
..+.+.+|+++.|+-.|-+.|.++|++..| .|.||+|+|+|.+|++||. ..|+|.|.++++||+|.+ ++.+|+.-.
T Consensus 31 V~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~ra 109 (258)
T KOG0429|consen 31 VCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRA 109 (258)
T ss_pred HHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhh
Confidence 445588999999999999999999997775 7999999999999999995 699999999999999987 899999877
Q ss_pred CCCCCccc-CHHHHHHHHHHHhcCCCCCCc--ccHHHHHHHHHCHHHHHHHHHHHHHHH
Q 031320 102 KDKWSPAL-QIRTVLLSIQALLSAPNPDDP--LSDNIAKHWKADETEAVETAKEWTRLY 157 (161)
Q Consensus 102 ~~~W~p~~-~i~~il~~l~~ll~~p~~~~p--~n~~aa~~y~~~~~~f~~~a~~~~~~~ 157 (161)
...|+-.- +|+++|..|+.+|++|+.+.+ .|++|+.+|++++++|.++|+++++..
T Consensus 110 f~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 110 FPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred hhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77798765 799999999999999998877 499999999999999999999999753
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.1e-22 Score=156.87 Aligned_cols=107 Identities=29% Similarity=0.607 Sum_probs=96.2
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++|-++++ + |...+.+.|.++|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+.
T Consensus 13 VkRlmkEa~El~-~--------------Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~i 77 (314)
T KOG0428|consen 13 VKRLMKEAAELK-D--------------PTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSII 77 (314)
T ss_pred HHHHHHHHHHhc-C--------------chhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEE
Confidence 489999999887 4 6777888999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCC---CCCCcccCHHHHHHHHHHHhcC
Q 031320 81 FLTKIYHPNIDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSA 124 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~---~~W~p~~~i~~il~~l~~ll~~ 124 (161)
.+|+ +..+-.+.+||+++.. +.|.|+|+|+..|.+|..+|-+
T Consensus 78 LLTp--NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 78 LLTP--NGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred EEcC--CCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 9997 4445556789999985 8899999999999999998865
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=137.71 Aligned_cols=102 Identities=32% Similarity=0.689 Sum_probs=93.4
Q ss_pred HHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeec--cccccccCCCceEecc
Q 031320 23 FVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK--IYHPNIDKLGRICLDI 100 (161)
Q Consensus 23 ~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~HPnV~~~G~ic~~~ 100 (161)
+.|....|.|++|...++.+-..++.|.||.||||.+|.|.|.+.||++||..||.|...+. .++||.|..|+||+++
T Consensus 861 ~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~ 940 (1101)
T KOG0895|consen 861 KILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSL 940 (1101)
T ss_pred HhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhh
Confidence 45677789999999999988888999999999999999999999999999999999999885 4899999999999999
Q ss_pred CC-------CCCCcccCHHHHHHHHHHHhcC
Q 031320 101 LK-------DKWSPALQIRTVLLSIQALLSA 124 (161)
Q Consensus 101 l~-------~~W~p~~~i~~il~~l~~ll~~ 124 (161)
|. +-|+|+-+|.++|.+|+.|+-.
T Consensus 941 l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 941 LNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred hccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 96 5699988999999999998765
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-14 Score=130.75 Aligned_cols=109 Identities=35% Similarity=0.696 Sum_probs=98.4
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEe
Q 031320 3 YVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL 82 (161)
Q Consensus 3 r~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~ 82 (161)
|+++|++.+.++ .+.|+.+.|.+......++.|.||.||||++|+|.|.|.||..||..||.|++.
T Consensus 286 rv~ke~~llskd--------------lpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~l 351 (1101)
T KOG0895|consen 286 KVAKELKLLSKD--------------LPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYL 351 (1101)
T ss_pred HHHHHhhhhccc--------------CCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEe
Confidence 566666666666 889999999999999999999999999999999999999999999999999999
Q ss_pred ec---cccccccCCCceEeccCC-------CCCCcc-cCHHHHHHHHHHHhcCC
Q 031320 83 TK---IYHPNIDKLGRICLDILK-------DKWSPA-LQIRTVLLSIQALLSAP 125 (161)
Q Consensus 83 t~---i~HPnV~~~G~ic~~~l~-------~~W~p~-~~i~~il~~l~~ll~~p 125 (161)
|. .+.||.|.+|+||+++|. +.|+|. -++.++|..|+.++..-
T Consensus 352 t~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 352 TGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred eccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 98 489999999999999884 679998 68999999999998764
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1e-13 Score=99.30 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=84.6
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEe-CCCC--cceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 3 YVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 3 r~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
||.+||.+-++.. -+..++-.. +++| +..|.++|.||+.|+||+-+|+++|.+.++||..||+|
T Consensus 9 rlleele~g~kg~-------------g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~v 75 (138)
T KOG0896|consen 9 RLLEELEEGEKGI-------------GDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTV 75 (138)
T ss_pred hhhhhhccccccc-------------cCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCcee
Confidence 5777777775552 222233222 2333 45899999999999999999999999999999999999
Q ss_pred EEeeccccccccC-CCceEeccC--CCCCCcccCHHHHHHHHHHHhcC
Q 031320 80 RFLTKIYHPNIDK-LGRICLDIL--KDKWSPALQIRTVLLSIQALLSA 124 (161)
Q Consensus 80 ~f~t~i~HPnV~~-~G~ic~~~l--~~~W~p~~~i~~il~~l~~ll~~ 124 (161)
+|.+++--+-|+. +|.+.-..+ -.+|.-.++++.+|..++.+|.+
T Consensus 76 rf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 76 RFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred EEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 9999998888865 667663222 27999999999999999876654
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.64 E-value=1.4e-07 Score=68.72 Aligned_cols=67 Identities=31% Similarity=0.658 Sum_probs=60.4
Q ss_pred CCCeEEEEEeCCCCCCCCCCeEEEeecc---ccccccCCCceEe---ccCCCCCCcccCHHHHHHHHHHHhcC
Q 031320 58 EGGVFKLELFLPEDYPMSAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 124 (161)
Q Consensus 58 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~HPnV~~~G~ic~---~~l~~~W~p~~~i~~il~~l~~ll~~ 124 (161)
.|+.+.+.|.+|+.||..||.|....+. +=|||+.+|.+|+ +..-+.|.|.-.+.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988765 6899999999998 66678999999999999999998873
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.9e-07 Score=64.58 Aligned_cols=72 Identities=24% Similarity=0.453 Sum_probs=55.9
Q ss_pred EEEEeCCCCCCCCCCeEEEeeccc-cccccCCCceEeccC-CCCCCcccCHHHHHHHHHHHhcCCC--CCCcccHH
Q 031320 63 KLELFLPEDYPMSAPKVRFLTKIY-HPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPN--PDDPLSDN 134 (161)
Q Consensus 63 ~~~i~fp~~yP~~pP~v~f~t~i~-HPnV~~~G~ic~~~l-~~~W~p~~~i~~il~~l~~ll~~p~--~~~p~n~~ 134 (161)
-+.+.|++|||+.||.++...|+- -.-|-.+|.||+.++ .++|+.+++|+.+++++-.++-.-. .+.+++.+
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~ 89 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKS 89 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchh
Confidence 456889999999999998776642 223446799999999 5889999999999999999887644 34445443
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.32 E-value=2.3e-06 Score=61.44 Aligned_cols=78 Identities=27% Similarity=0.543 Sum_probs=54.5
Q ss_pred cceEEEEEECCCCCCCCCCeEE--EEEeCCCCCCCCCCeEEEeeccc-----cccccCCCceEeccCCCCCCc-ccCHHH
Q 031320 42 MRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTKIY-----HPNIDKLGRICLDILKDKWSP-ALQIRT 113 (161)
Q Consensus 42 ~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~yP~~pP~v~f~t~i~-----HPnV~~~G~ic~~~l~~~W~p-~~~i~~ 113 (161)
+....++|. -.|.|..|. +.|-+|.+||..||.+....... +.+||++|+|.+..| +.|.+ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 444555553 458898885 66779999999999998875532 449999999999888 78987 678999
Q ss_pred HHHHHHHHhcC
Q 031320 114 VLLSIQALLSA 124 (161)
Q Consensus 114 il~~l~~ll~~ 124 (161)
++..|...|..
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 98888887653
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00018 Score=59.50 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=64.0
Q ss_pred CcceEEEEEECCCCCCCCCCeEE--EEEeCCCCCCCCCCeEEEeecc-----ccccccCCCceEeccCCCCCC-cccCHH
Q 031320 41 NMRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWS-PALQIR 112 (161)
Q Consensus 41 n~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~yP~~pP~v~f~t~i-----~HPnV~~~G~ic~~~l~~~W~-p~~~i~ 112 (161)
+++...++|. ++|.|.+|. +.|-+.+.||..||.+.....- -|-+|+++|.|.+..| -+|. |+.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHH
Confidence 4555666664 578888876 4566899999999999776431 3889999999999999 6787 577899
Q ss_pred HHHHHHHHHhcCCC
Q 031320 113 TVLLSIQALLSAPN 126 (161)
Q Consensus 113 ~il~~l~~ll~~p~ 126 (161)
.++..|.+.|.++.
T Consensus 126 ~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 126 GLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999988888744
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.99 E-value=0.092 Score=37.73 Aligned_cols=90 Identities=17% Similarity=0.371 Sum_probs=59.7
Q ss_pred CCeEEEeCCCCcceEEEEEEC--CCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeeccccccccCCCce--EeccC-----
Q 031320 31 PGISASPAEDNMRYFNVMILG--PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI--CLDIL----- 101 (161)
Q Consensus 31 ~~~~~~p~~~n~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnV~~~G~i--c~~~l----- 101 (161)
.|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|..||..+|.+.+..|-.... ..|.+ |.+..
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 46677766555566655 555 44556999999999999999999998776665422111 11222 32111
Q ss_pred ---------CCCCCccc-CHHHHHHHHHHHhc
Q 031320 102 ---------KDKWSPAL-QIRTVLLSIQALLS 123 (161)
Q Consensus 102 ---------~~~W~p~~-~i~~il~~l~~ll~ 123 (161)
...|+|.. +|.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 25689877 69999988887764
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.85 E-value=0.04 Score=40.47 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=46.5
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCC--CeEEEEEeCCCCCCCCCCeE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEG--GVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~g--g~f~~~i~fp~~yP~~pP~v 79 (161)
.||+.|++.+-+- .+..+......+.+... .+=+.|.+..-- .+.- ..|.+++.+|..||..||.+
T Consensus 27 ~RLKEEy~aLI~Y-------v~~nK~~DndWF~lesn-~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 27 QRLKEEYQALIKY-------VENNKENDNDWFRLESN-KEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----
T ss_pred HHHHHHHHHHHHH-------HHhcccccCCeEEeccC-CCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcce
Confidence 4777776654333 12344456667777743 344667554331 1222 34556677899999999999
Q ss_pred EEeeccc-cccccCCCceEeccCC-CCCC---cccCHHHHH
Q 031320 80 RFLTKIY-HPNIDKLGRICLDILK-DKWS---PALQIRTVL 115 (161)
Q Consensus 80 ~f~t~i~-HPnV~~~G~ic~~~l~-~~W~---p~~~i~~il 115 (161)
....--- -.-.|..|+||++.=. .-|. |.+.|...+
T Consensus 95 ~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 95 ALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred eccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 7543211 1234567999997653 3463 666665543
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.87 E-value=0.045 Score=41.20 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=48.0
Q ss_pred EEEeCCCCCCCCCCeEEEeeccc---cccccCC-----CceEeccC-CCCCCcccCHHHHHHHHHHHhcC
Q 031320 64 LELFLPEDYPMSAPKVRFLTKIY---HPNIDKL-----GRICLDIL-KDKWSPALQIRTVLLSIQALLSA 124 (161)
Q Consensus 64 ~~i~fp~~yP~~pP~v~f~t~i~---HPnV~~~-----G~ic~~~l-~~~W~p~~~i~~il~~l~~ll~~ 124 (161)
+.|.|+.+||..+|.|.++...| +||+... ..+|+.-. -..|.+..++..+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 45899999999999877776543 5777765 67998544 26789999999999999887753
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.72 E-value=0.077 Score=36.32 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=30.1
Q ss_pred CCCcceEEEEEE--CCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeecc
Q 031320 39 EDNMRYFNVMIL--GPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 85 (161)
Q Consensus 39 ~~n~~~w~~~i~--Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i 85 (161)
..+...+.+.+. ....+.-....+.+.+.||++||..+|.|...+..
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 26 SKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp SSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred cCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 344455666662 12344455678999999999999999999877753
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.42 E-value=0.98 Score=30.46 Aligned_cols=27 Identities=33% Similarity=0.600 Sum_probs=22.7
Q ss_pred CCCeEEEEEeCCCCCCCCCCeEEEeec
Q 031320 58 EGGVFKLELFLPEDYPMSAPKVRFLTK 84 (161)
Q Consensus 58 ~gg~f~~~i~fp~~yP~~pP~v~f~t~ 84 (161)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999987764
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=0.19 Score=36.47 Aligned_cols=59 Identities=24% Similarity=0.450 Sum_probs=36.7
Q ss_pred ECCCCCCCCCC----------eEEEEEeCCCCCCCCCCeEEEeeccc-cccccCCCceEecc-CCCCCCcc
Q 031320 50 LGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLTKIY-HPNIDKLGRICLDI-LKDKWSPA 108 (161)
Q Consensus 50 ~Gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f~t~i~-HPnV~~~G~ic~~~-l~~~W~p~ 108 (161)
.-+.||-|-|. .|.+++.+|..||..+|.+....--- ---.|..|.||+.- +..-|...
T Consensus 58 sn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn 128 (167)
T KOG3357|consen 58 SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARN 128 (167)
T ss_pred cCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhc
Confidence 44677777663 45566778999999999986422110 11234569999843 34557533
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=87.66 E-value=1.5 Score=36.11 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=51.6
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
.+|.+||.++..+. .+.+. .++++...++.+.. +.-...++|.++.+||.++|.+..
T Consensus 102 s~ll~EIe~IGW~k----------------l~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~ 158 (291)
T PF09765_consen 102 SNLLKEIEAIGWDK----------------LVQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSL 158 (291)
T ss_dssp -CHHHHHHHHHCGC----------------CEEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS
T ss_pred HHHHHHHHHhcccc----------------ceEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeC
Confidence 35667777666663 23332 35678888888872 225667899999999999997543
Q ss_pred eeccccccccCCCceEeccCCCCCCc-ccCHHHHHHHHHHHh
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALL 122 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p-~~~i~~il~~l~~ll 122 (161)
.-++ .+...|.+ ..++.+++...+..+
T Consensus 159 ~~P~--------------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 159 DLPI--------------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp -TTS---------------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred CCCc--------------chhhhhcccccCHHHHHHHHHHHH
Confidence 2221 01135888 667777766655554
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.47 E-value=3.2 Score=38.46 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=50.4
Q ss_pred HHHHHHHhhhh--hhcchhhhHHHhh------CCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeE-EEEEeCCCCCCC
Q 031320 4 VNNYLKSCSDE--QLFDNSLCFVISV------NTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVF-KLELFLPEDYPM 74 (161)
Q Consensus 4 ~~~el~~~~~~--~~~~~~~~~~l~~------~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f-~~~i~fp~~yP~ 74 (161)
+..+|+-++-. .++++++-+-|.. .+.+++.++..+-.-..-.+++.||--- -.|.+| ++.|.||.+||.
T Consensus 402 ~l~wl~gi~mgq~~~~n~~~pQnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~-~d~y~flrm~V~FP~nYPn 480 (1081)
T KOG0309|consen 402 LLEWLKGIQMGQEDLFNETLPQNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHR-VDDYIFLRMLVKFPANYPN 480 (1081)
T ss_pred hhhhhhccccccccccchhhhhhHHhHHhHhhccccccceEeeccccceEEEEecCCCCc-cccceeEEEEEeccccCCC
Confidence 34445544432 4555555544333 3445666665555556677788876543 344444 788999999999
Q ss_pred -CCCeEEEeec
Q 031320 75 -SAPKVRFLTK 84 (161)
Q Consensus 75 -~pP~v~f~t~ 84 (161)
.+|.++|..+
T Consensus 481 ~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 481 NAAPSFQFENP 491 (1081)
T ss_pred CCCCceEEecC
Confidence 5899999865
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=75.80 E-value=4.3 Score=30.73 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=26.0
Q ss_pred eeccccc---cccCCCceEeccCCCCCCcccCHHHHHHHHHH-HhcCCC
Q 031320 82 LTKIYHP---NIDKLGRICLDILKDKWSPALQIRTVLLSIQA-LLSAPN 126 (161)
Q Consensus 82 ~t~i~HP---nV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~-ll~~p~ 126 (161)
.|++||. ||+.+|.||.... =.|.......+..+.. +|.++.
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~---~~P~~~~~~~i~~we~~Ff~S~f 134 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNN---SLPKISTLASIEAWEDAFFNSPF 134 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCC---cCCCccCHHHHHHHHHHHhCCCc
Confidence 4566665 9999999998653 2344444455666654 444443
No 38
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=72.64 E-value=6.4 Score=31.31 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=26.3
Q ss_pred eccccc---cccCCCceEeccCCCCCCccc-CHHHHHHHHHHHhcC
Q 031320 83 TKIYHP---NIDKLGRICLDILKDKWSPAL-QIRTVLLSIQALLSA 124 (161)
Q Consensus 83 t~i~HP---nV~~~G~ic~~~l~~~W~p~~-~i~~il~~l~~ll~~ 124 (161)
|++||. ||+.+|.||+.... .|.. ++.+ +....+.|.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhC
Confidence 556765 99999999986553 4544 5666 7777666554
No 39
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=65.88 E-value=5.6 Score=31.22 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCCCCCCeEE
Q 031320 61 VFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 61 ~f~~~i~fp~~yP~~pP~v~ 80 (161)
.+.+.+.++.+||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 40
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=63.34 E-value=23 Score=22.70 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=36.7
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 117 SIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 117 ~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|..++..-++...+..+|.....+=-+.|...+-.-+.++|++
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkH 49 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKH 49 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777677788999999999999999999998888888864
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=62.24 E-value=22 Score=29.93 Aligned_cols=63 Identities=25% Similarity=0.540 Sum_probs=42.7
Q ss_pred eEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEe-eccccccccCCCceEeccCCCCCCccc--CHHHHHHHH
Q 031320 44 YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL-TKIYHPNIDKLGRICLDILKDKWSPAL--QIRTVLLSI 118 (161)
Q Consensus 44 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~-t~i~HPnV~~~G~ic~~~l~~~W~p~~--~i~~il~~l 118 (161)
.+++.| ||.|...+-+|.|...||..||.+.|- ..-|+|.... +..+ .+|++.- ++..++..|
T Consensus 55 RF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 55 RFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred eEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHH
Confidence 455555 699999999999999999999999996 3347884321 1222 5787654 344444443
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=58.46 E-value=32 Score=28.93 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=22.5
Q ss_pred CeEEEEEeCCCCCCCCCCeEEEeecccc
Q 031320 60 GVFKLELFLPEDYPMSAPKVRFLTKIYH 87 (161)
Q Consensus 60 g~f~~~i~fp~~yP~~pP~v~f~t~i~H 87 (161)
=.|-+.|.+|..||...|.++|.+- ||
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS~-yH 332 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQSV-YH 332 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEee-cc
Confidence 4477889999999999999999873 44
No 43
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.20 E-value=13 Score=31.89 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=32.2
Q ss_pred HHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 5 NNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 5 ~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
.+||+|.-...+...++-..+.-+||.|+ .+.|||||
T Consensus 160 i~EirE~VELPL~~PElF~~~GI~PPKGV--------------LLYGPPGT 196 (406)
T COG1222 160 IQEIREVVELPLKNPELFEELGIDPPKGV--------------LLYGPPGT 196 (406)
T ss_pred HHHHHHHhcccccCHHHHHHcCCCCCCce--------------EeeCCCCC
Confidence 57888888888888888899999999997 57899998
No 44
>smart00340 HALZ homeobox associated leucin zipper.
Probab=51.53 E-value=11 Score=21.94 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=11.9
Q ss_pred hhHHHHHHHhhhhh
Q 031320 2 RYVNNYLKSCSDEQ 15 (161)
Q Consensus 2 rr~~~el~~~~~~~ 15 (161)
|||++|++++...+
T Consensus 22 rRL~ke~~eLralk 35 (44)
T smart00340 22 RRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHhcc
Confidence 79999999988774
No 45
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=47.78 E-value=31 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=23.1
Q ss_pred CCCeEEEEEeCCCCCC-CCCCeEEEee
Q 031320 58 EGGVFKLELFLPEDYP-MSAPKVRFLT 83 (161)
Q Consensus 58 ~gg~f~~~i~fp~~yP-~~pP~v~f~t 83 (161)
+.|.|.|.-.+|..|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4599999999999999 9999997765
No 46
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=46.96 E-value=59 Score=20.72 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 117 SIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 117 ~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|+.++..-++...+++++.++..+=.+.|...+-..+.+-|++
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKh 47 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKH 47 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888899999999999999998899999988888888764
No 47
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=45.63 E-value=33 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCCeEEEEEeCCCCCCCCCCeEEEee
Q 031320 58 EGGVFKLELFLPEDYPMSAPKVRFLT 83 (161)
Q Consensus 58 ~gg~f~~~i~fp~~yP~~pP~v~f~t 83 (161)
+.|.|.|+-.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 56999999999999999999998875
No 48
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=41.76 E-value=53 Score=27.47 Aligned_cols=49 Identities=18% Similarity=0.414 Sum_probs=30.4
Q ss_pred EEEEECCCCCCCCCCeEE-EEEeC-----CCCCCCCCCeEEEeeccccccccCCCc
Q 031320 46 NVMILGPSQSPYEGGVFK-LELFL-----PEDYPMSAPKVRFLTKIYHPNIDKLGR 95 (161)
Q Consensus 46 ~~~i~Gp~~tpy~gg~f~-~~i~f-----p~~yP~~pP~v~f~t~i~HPnV~~~G~ 95 (161)
...+-|-+.. |+-|.+. +...| -++=+...|+|.|.-.+|||||-+.-+
T Consensus 274 ~l~Vg~E~q~-w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~~r 328 (334)
T KOG3696|consen 274 ELVVGGEPQC-WAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPAER 328 (334)
T ss_pred eEEEcCcccc-ccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccccc
Confidence 3445443433 5544433 33443 244466799999999999999976433
No 49
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.58 E-value=40 Score=27.88 Aligned_cols=37 Identities=16% Similarity=0.401 Sum_probs=28.2
Q ss_pred HHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 5 NNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 5 ~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
+||+++.-...+.-.++-+.+.-+||.|+ .+.||+||
T Consensus 164 kqeireavelplt~~~ly~qigidpprgv--------------llygppg~ 200 (408)
T KOG0727|consen 164 KQEIREAVELPLTHADLYKQIGIDPPRGV--------------LLYGPPGT 200 (408)
T ss_pred HHHHHHHHhccchHHHHHHHhCCCCCcce--------------EEeCCCCC
Confidence 57888877777766777778888888887 46788887
No 50
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.54 E-value=23 Score=31.02 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=29.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
++|..||.++.+.+-+...+.+.|+| |+ .+.|||||
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKR----GY--------------LLYGPPGT 246 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKR----GY--------------LLYGPPGT 246 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhc----cc--------------eeeCCCCC
Confidence 58999999999998888888888776 22 47888888
No 51
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=37.22 E-value=56 Score=24.32 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=22.8
Q ss_pred CCCeEEEEEeCCCCCC-----CCCCeEEEee
Q 031320 58 EGGVFKLELFLPEDYP-----MSAPKVRFLT 83 (161)
Q Consensus 58 ~gg~f~~~i~fp~~yP-----~~pP~v~f~t 83 (161)
+.|.|.|.-.+|.-|| ..||.|.|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 4589999999999999 8999998775
No 52
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.03 E-value=17 Score=28.16 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCceEeccCCCCCCcccCHHHHHHHHHHHh
Q 031320 93 LGRICLDILKDKWSPALQIRTVLLSIQALL 122 (161)
Q Consensus 93 ~G~ic~~~l~~~W~p~~~i~~il~~l~~ll 122 (161)
.+..|++++.+.|+|.+|++..+.-++.++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 357999999999999999887776665544
No 53
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=36.02 E-value=27 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.072 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHH-CHHHHHHHHHHHHHHHhcCC
Q 031320 128 DDPLSDNIAKHWKA-DETEAVETAKEWTRLYASDG 161 (161)
Q Consensus 128 ~~p~n~~aa~~y~~-~~~~f~~~a~~~~~~~a~~~ 161 (161)
-+.+-..--+.|.+ +++.|+++++++|++.|++|
T Consensus 206 ~s~lQ~kyW~~Y~~~E~~lF~~~~~eHA~~lA~~n 240 (251)
T PF14798_consen 206 VSFLQLKYWSIYIEKEQELFDETAKEHARKLAERN 240 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566765 57899999999999999864
No 54
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=34.40 E-value=1.1e+02 Score=20.63 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.5
Q ss_pred CCCCeEEEEEeCCCCCCCCCCeEEEeec
Q 031320 57 YEGGVFKLELFLPEDYPMSAPKVRFLTK 84 (161)
Q Consensus 57 y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 84 (161)
-+|..+.+...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46777888888899999 599999875
No 55
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=33.22 E-value=14 Score=34.59 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCCCCCCeEEEeeccc
Q 031320 61 VFKLELFLPEDYPMSAPKVRFLTKIY 86 (161)
Q Consensus 61 ~f~~~i~fp~~yP~~pP~v~f~t~i~ 86 (161)
+=.+.|.+|.+||..+|.+.+.+.-|
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp --------------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccHHHh
Confidence 34578999999999999998766543
No 56
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=32.51 E-value=1.3e+02 Score=23.63 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=42.1
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC-CCCCCeEEEEEeCCCCC--------
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS-PYEGGVFKLELFLPEDY-------- 72 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t-py~gg~f~~~i~fp~~y-------- 72 (161)
.||.+.++++++.. .+...-|.+.+. |... -| || |.+.++|.++=
T Consensus 12 eR~~e~~~~~k~~L-----------------------~~a~~GW~~~yy-p~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~ 65 (235)
T PF14135_consen 12 ERINEALAEYKKIL-----------------------TSAPNGWKLEYY-PKTDQSY-GG-YTFLMKFDDDGKVTMASDF 65 (235)
T ss_pred HHHHHHHHHHHHHH-----------------------hcCCCceEEEEE-CCCCccC-Cc-EEEEEEECCCCeEEEEEcc
Confidence 37777777777773 234456999998 4433 23 33 77777777654
Q ss_pred --------------CCCCCeEEEeec--cccccccCC
Q 031320 73 --------------PMSAPKVRFLTK--IYHPNIDKL 93 (161)
Q Consensus 73 --------------P~~pP~v~f~t~--i~HPnV~~~ 93 (161)
...-|.+.|.|- +.|--.++.
T Consensus 66 ~~~~~~~tS~Y~~~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 66 DSASTPSTSSYRLKQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred CCCCceeeEEEEEecCCceEEEEEeCCceEEEccCCC
Confidence 233488888882 677655543
No 57
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=32.41 E-value=48 Score=26.05 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=42.8
Q ss_pred CCCCeEEEeecccccccc--CCCceEeccCCCCCC--cccCHHHHHHHHHHHhcCCCCC
Q 031320 74 MSAPKVRFLTKIYHPNID--KLGRICLDILKDKWS--PALQIRTVLLSIQALLSAPNPD 128 (161)
Q Consensus 74 ~~pP~v~f~t~i~HPnV~--~~G~ic~~~l~~~W~--p~~~i~~il~~l~~ll~~p~~~ 128 (161)
..||.|-|-.+.|...|+ +.|-|-..+...+|- |.-++.+-|..|..++..|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 479999999999999987 356555566666664 7788888888888888887754
No 58
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=31.51 E-value=1.4e+02 Score=18.75 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 119 QALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 119 ~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
+.+..+-..+ .++.+++....++-+.|.+.+-+-+.+|+.+
T Consensus 9 ~ria~~~Gi~-ris~~a~~~l~~~~e~rl~~i~~~A~k~~~h 49 (65)
T smart00803 9 KDVAESLGIG-NLSDEAAKLLAEDVEYRIKEIVQEALKFMRH 49 (65)
T ss_pred HHHHHHCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 4888999999999999999998888888754
No 59
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=29.19 E-value=1.7e+02 Score=19.27 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=30.1
Q ss_pred ceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeecccc
Q 031320 43 RYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 87 (161)
Q Consensus 43 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 87 (161)
.+|.+.+.|+.+.-...-+=++...+.+.|+. |...+..+-|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 47999999988876666777888999999886 77666665433
No 60
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=28.54 E-value=1.1e+02 Score=24.70 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=32.9
Q ss_pred CCcceEEEEEECCCCCCCCCC----eEEEEEeCC-----CCCCCCCCeEEEeeccccc
Q 031320 40 DNMRYFNVMILGPSQSPYEGG----VFKLELFLP-----EDYPMSAPKVRFLTKIYHP 88 (161)
Q Consensus 40 ~n~~~w~~~i~Gp~~tpy~gg----~f~~~i~fp-----~~yP~~pP~v~f~t~i~HP 88 (161)
.|+.-|++.+. -.+|.-..| .|+.+++++ .+-||++|+|+.+++-|-.
T Consensus 100 KDp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 45667888887 455544444 345555554 6889999999999986644
No 61
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=27.56 E-value=74 Score=26.61 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.5
Q ss_pred CeEEEEEeCCCCCCCCCCeEEEeec
Q 031320 60 GVFKLELFLPEDYPMSAPKVRFLTK 84 (161)
Q Consensus 60 g~f~~~i~fp~~yP~~pP~v~f~t~ 84 (161)
-.+.+.+..++.||...|+|+.+.|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4566788899999999999998876
No 62
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=27.12 E-value=1e+02 Score=22.43 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred CCCCeEEEe--CCCCcceEEEEEECCCCCCCC
Q 031320 29 TAPGISASP--AEDNMRYFNVMILGPSQSPYE 58 (161)
Q Consensus 29 ~~~~~~~~p--~~~n~~~w~~~i~Gp~~tpy~ 58 (161)
+.-+-.+.+ .+.|...|.+++.|+.||+..
T Consensus 32 Kt~~~~~~~~WqPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 32 KTWNNTVYPTWQPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cccCceeeeeccCCCCcceEEEEECCCCccee
Confidence 333444443 467888899999999988653
No 63
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.39 E-value=29 Score=22.86 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=30.3
Q ss_pred hhHHHHHHHhhhh-hhcchhhhHHHhhCCCCCeEEEeCCC
Q 031320 2 RYVNNYLKSCSDE-QLFDNSLCFVISVNTAPGISASPAED 40 (161)
Q Consensus 2 rr~~~el~~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~~~ 40 (161)
||+.++|++-.++ ..+.+.+.+.|.+++-.--++.|+.+
T Consensus 17 ~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~pd~~ 56 (82)
T PF11123_consen 17 QQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQPDEN 56 (82)
T ss_pred HHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcCccHH
Confidence 6788888887776 67888899999998776666666654
No 64
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=24.96 E-value=1e+02 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 131 LSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 131 ~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
.+.+|+..|.++++.|...+.+.+++.+
T Consensus 239 ~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 239 SSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 5789999999999999999999988765
No 65
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.42 E-value=1.1e+02 Score=23.48 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=21.3
Q ss_pred CCCeEEEEEeCCCCCCC-----CCCeEEEee
Q 031320 58 EGGVFKLELFLPEDYPM-----SAPKVRFLT 83 (161)
Q Consensus 58 ~gg~f~~~i~fp~~yP~-----~pP~v~f~t 83 (161)
+.|.|.|.-..|-.||. .||.|.|.-
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 45889999999999998 888886653
No 66
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=23.83 E-value=75 Score=28.76 Aligned_cols=29 Identities=38% Similarity=0.817 Sum_probs=24.7
Q ss_pred CCCCCCeEEEEEeCCCCCCC---CCCeEEEeec
Q 031320 55 SPYEGGVFKLELFLPEDYPM---SAPKVRFLTK 84 (161)
Q Consensus 55 tpy~gg~f~~~i~fp~~yP~---~pP~v~f~t~ 84 (161)
+||.=|.|-+ +.+|++||+ +-|-++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4788888885 668999998 5899999998
No 67
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=22.59 E-value=2.2e+02 Score=21.44 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=37.1
Q ss_pred hhhhcchhhhHHHhhC---CCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeecc
Q 031320 13 DEQLFDNSLCFVISVN---TAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 85 (161)
Q Consensus 13 ~~~~~~~~~~~~l~~~---~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i 85 (161)
++..||.++...-.+. -..|..+. +.+.=...+.+..|+-+|= --...+++.| .||-..||.|.|..+.
T Consensus 6 SrakFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp~ 77 (177)
T PF14455_consen 6 SRAKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDPF 77 (177)
T ss_pred hHHHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEeccc
Confidence 3344555555322222 12455554 2333334444444555542 2223566666 6899999999999874
No 68
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.85 E-value=1.4e+02 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=20.1
Q ss_pred CCCeEEEEEeCCCCCCC-----CCCeEEEe
Q 031320 58 EGGVFKLELFLPEDYPM-----SAPKVRFL 82 (161)
Q Consensus 58 ~gg~f~~~i~fp~~yP~-----~pP~v~f~ 82 (161)
+.|.|.|.-.+|.-||. .||.|.|.
T Consensus 91 ~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 91 ADGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999995 78877554
No 69
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=20.43 E-value=39 Score=18.36 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=9.1
Q ss_pred cccccccCCCc-eEec
Q 031320 85 IYHPNIDKLGR-ICLD 99 (161)
Q Consensus 85 i~HPnV~~~G~-ic~~ 99 (161)
.|||.++.+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999988776 5643
No 70
>PHA00425 DNA packaging protein, small subunit
Probab=20.36 E-value=46 Score=22.18 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhhh-hhcchhhhHHHhhCCCCCeEEEeCCC
Q 031320 2 RYVNNYLKSCSDE-QLFDNSLCFVISVNTAPGISASPAED 40 (161)
Q Consensus 2 rr~~~el~~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~~~ 40 (161)
||+..+|++-.++ ..+.+.|.+.|.|.+-.--.+.|+.+
T Consensus 19 ~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~pD~~ 58 (88)
T PHA00425 19 QRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQPDEN 58 (88)
T ss_pred HHHHHHhcCccccChHHHHHHHHHHHHhcccccccCCcHH
Confidence 6788888887776 67888899999998776666666653
No 71
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=20.26 E-value=2.2e+02 Score=24.42 Aligned_cols=29 Identities=31% Similarity=0.645 Sum_probs=23.3
Q ss_pred CCceEeccCC---CCCCccc--CHHHHHHHHHHH
Q 031320 93 LGRICLDILK---DKWSPAL--QIRTVLLSIQAL 121 (161)
Q Consensus 93 ~G~ic~~~l~---~~W~p~~--~i~~il~~l~~l 121 (161)
+|+||.++-- +...|.. +|.+++..|.++
T Consensus 336 Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 336 TGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred CCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 8999976542 6677766 799999999888
Done!