Query 031320
Match_columns 161
No_of_seqs 126 out of 1146
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 19:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r0j_A Ubiquitin carrier prote 100.0 4.9E-52 1.7E-56 307.5 17.6 147 1-161 3-149 (149)
2 4gpr_A Ubiquitin-conjugating e 100.0 1.8E-51 6.1E-56 305.1 19.1 145 1-159 6-150 (151)
3 2c2v_B Ubiquitin-conjugating e 100.0 1E-51 3.4E-56 307.4 16.6 146 1-160 7-152 (154)
4 2ayv_A Ubiquitin-conjugating e 100.0 9.7E-51 3.3E-55 305.4 19.2 144 1-158 23-166 (166)
5 1z2u_A Ubiquitin-conjugating e 100.0 8E-51 2.7E-55 301.3 17.9 145 1-159 6-150 (150)
6 1zdn_A Ubiquitin-conjugating e 100.0 4.2E-51 1.4E-55 305.2 16.4 144 1-158 15-158 (158)
7 2c4o_A Ubiquitin-conjugating e 100.0 1.2E-50 4.2E-55 304.6 19.0 145 1-159 21-165 (165)
8 1fxt_A Ubiquitin-conjugating e 100.0 4.7E-51 1.6E-55 302.2 15.1 145 1-159 3-149 (149)
9 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.6E-50 5.5E-55 305.0 18.1 144 2-159 7-150 (169)
10 1jat_A Ubiquitin-conjugating e 100.0 7.8E-51 2.7E-55 302.8 15.9 146 1-160 7-152 (155)
11 2aak_A UBC1, ubiquitin conjuga 100.0 2.3E-50 7.9E-55 299.4 18.1 145 2-160 7-151 (152)
12 1yh2_A HSPC150 protein similar 100.0 3.8E-50 1.3E-54 303.0 19.5 146 1-160 6-155 (169)
13 2e2c_A Ubiquitin conjugating e 100.0 4.6E-50 1.6E-54 299.0 18.4 144 2-160 12-155 (156)
14 3h8k_A Ubiquitin-conjugating e 100.0 8.8E-50 3E-54 299.6 19.4 146 1-160 5-164 (164)
15 2bep_A Ubiquitin-conjugating e 100.0 6.4E-50 2.2E-54 299.0 18.6 148 2-160 11-159 (159)
16 3rcz_B SUMO-conjugating enzyme 100.0 1E-49 3.6E-54 298.9 17.1 145 1-159 12-163 (163)
17 3bzh_A Ubiquitin-conjugating e 100.0 2.3E-49 8E-54 304.4 19.2 144 2-159 51-194 (194)
18 2ucz_A UBC7, ubiquitin conjuga 100.0 1.9E-49 6.6E-54 298.0 18.1 144 2-159 7-164 (165)
19 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.5E-49 5E-54 305.2 17.6 158 2-160 35-193 (193)
20 2pwq_A Ubiquitin conjugating e 100.0 1.3E-49 4.5E-54 310.1 16.8 146 1-160 25-171 (216)
21 2gjd_A Ubiquitin-conjugating e 100.0 2.5E-49 8.4E-54 295.3 16.6 145 1-159 6-157 (157)
22 3k9o_A Ubiquitin-conjugating e 100.0 6.3E-49 2.2E-53 303.7 18.6 149 1-160 7-156 (201)
23 1wzv_A Ubiquitin-conjugating e 100.0 6.7E-49 2.3E-53 292.3 17.0 144 2-160 7-152 (155)
24 2grr_A Ubiquitin-conjugating e 100.0 5.6E-49 1.9E-53 294.5 16.5 145 2-160 10-161 (161)
25 1i7k_A Ubiquitin-conjugating e 100.0 6.3E-49 2.1E-53 298.6 16.1 144 2-160 33-176 (179)
26 3fn1_B NEDD8-conjugating enzym 100.0 3.8E-48 1.3E-52 291.5 18.0 143 2-159 17-167 (167)
27 1tte_A Ubiquitin-conjugating e 100.0 7.8E-49 2.7E-53 305.5 12.7 146 1-160 4-151 (215)
28 3e46_A Ubiquitin-conjugating e 100.0 8.4E-48 2.9E-52 305.9 18.3 148 2-160 60-208 (253)
29 2onu_A Ubiquitin-conjugating e 100.0 1.7E-48 5.8E-53 289.4 13.2 143 1-160 4-148 (152)
30 3rz3_A Ubiquitin-conjugating e 100.0 1.9E-47 6.5E-52 291.5 16.9 145 1-159 9-173 (183)
31 1c4z_D UBCH7, ubiquitin conjug 100.0 7.2E-48 2.5E-52 286.5 13.0 145 1-160 4-150 (154)
32 1yrv_A Ubiquitin-conjugating l 100.0 2.3E-47 7.9E-52 287.7 15.6 140 2-156 26-168 (169)
33 2awf_A Ubiquitin-conjugating e 100.0 2.5E-47 8.6E-52 288.3 14.5 138 2-153 20-172 (172)
34 2y9m_A Ubiquitin-conjugating e 100.0 2E-46 6.8E-51 283.4 18.2 148 1-159 8-168 (172)
35 1y8x_A Ubiquitin-conjugating e 100.0 1.7E-46 5.9E-51 280.7 17.1 138 2-156 9-147 (160)
36 2z5d_A Ubiquitin-conjugating e 100.0 2E-47 7E-52 290.1 12.2 140 2-159 28-169 (179)
37 4ddg_A Ubiquitin-conjugating e 100.0 5E-46 1.7E-50 313.0 18.2 146 1-160 5-150 (399)
38 2nvu_C NEDD8-conjugating enzym 100.0 4E-46 1.4E-50 283.5 15.9 139 2-157 29-168 (180)
39 1yf9_A Ubiquitin carrier prote 100.0 6.1E-46 2.1E-50 280.4 14.2 141 1-159 14-156 (171)
40 3o2u_A NEDD8-conjugating enzym 100.0 1.2E-44 3.9E-49 277.5 15.6 141 2-159 32-179 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.8E-43 6.1E-48 266.0 13.7 149 1-151 10-163 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 3.1E-41 1E-45 275.5 14.7 145 1-159 78-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 7E-42 2.4E-46 254.7 9.3 127 2-142 24-156 (156)
44 2fo3_A Ubiquitin-conjugating e 100.0 1.3E-40 4.5E-45 239.6 14.2 115 1-129 8-123 (125)
45 2h2y_A Ubiquitin-conjugating e 100.0 1E-39 3.4E-44 238.1 14.6 112 2-127 23-135 (136)
46 2a4d_A Ubiquitin-conjugating e 100.0 4.5E-40 1.5E-44 245.7 12.1 121 2-136 28-156 (160)
47 1jat_B Ubiquitin-conjugating e 100.0 4.8E-41 1.7E-45 245.6 6.4 124 2-139 9-138 (138)
48 2hlw_A Ubiquitin-conjugating e 100.0 1.5E-39 5.1E-44 245.1 8.6 121 2-136 38-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 1E-38 3.5E-43 232.7 12.0 108 2-123 25-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 1E-36 3.5E-41 232.9 15.0 114 1-130 16-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 9.6E-38 3.3E-42 238.4 5.2 139 1-158 29-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 4.5E-27 1.6E-31 174.3 0.5 113 1-141 34-161 (172)
53 3r3q_A Suppressor protein STP2 99.8 9.3E-20 3.2E-24 135.7 9.5 114 15-129 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.6 1.1E-17 3.9E-22 121.5 -0.3 64 43-109 58-132 (168)
55 3obq_A Tumor susceptibility ge 99.5 1.9E-14 6.5E-19 105.3 8.7 102 17-124 25-138 (146)
56 2ebm_A RWD domain-containing p 95.8 0.09 3.1E-06 36.3 9.4 42 42-83 37-78 (128)
57 3zqs_A E3 ubiquitin-protein li 94.8 0.51 1.7E-05 35.3 11.0 84 2-123 4-87 (186)
58 2daw_A RWD domain containing p 94.2 0.32 1.1E-05 34.9 8.6 24 61-84 76-99 (154)
59 2yz0_A Serine/threonine-protei 93.6 0.24 8.2E-06 34.6 6.8 42 42-84 45-86 (138)
60 2day_A Ring finger protein 25; 93.3 0.23 8E-06 34.2 6.3 44 41-84 38-83 (128)
61 2ebk_A RWD domain-containing p 92.9 0.39 1.3E-05 33.1 6.9 40 42-82 39-78 (128)
62 2cwb_A Chimera of immunoglobul 91.0 0.041 1.4E-06 37.7 0.0 35 125-159 21-55 (108)
63 1ukx_A GCN2, GCN2 EIF2alpha ki 90.5 0.19 6.4E-06 35.1 3.0 24 60-83 63-86 (137)
64 2dax_A Protein C21ORF6; RWD do 90.4 0.59 2E-05 33.2 5.7 24 61-84 74-97 (152)
65 4b4t_J 26S protease regulatory 41.9 31 0.001 28.5 4.6 39 3-55 155-193 (405)
66 1h3o_B Transcription initiatio 39.0 33 0.0011 21.6 3.4 43 118-160 11-53 (76)
67 4b4t_H 26S protease regulatory 30.5 43 0.0015 28.3 3.7 39 3-55 216-254 (467)
68 4b4t_L 26S protease subunit RP 30.0 48 0.0016 27.6 3.9 38 4-55 189-226 (437)
69 4b4t_K 26S protease regulatory 27.9 56 0.0019 27.1 4.0 39 3-55 179-217 (428)
70 4b4t_M 26S protease regulatory 27.6 53 0.0018 27.2 3.8 38 4-55 189-226 (434)
71 2cu9_A Spcia1, histone chapero 27.1 73 0.0025 22.9 4.0 38 41-78 36-86 (161)
72 4b4t_I 26S protease regulatory 26.3 60 0.0021 27.1 3.9 39 3-55 189-227 (437)
73 1taf_B TFIID TBP associated fa 24.8 86 0.0029 19.2 3.5 31 130-160 23-53 (70)
74 2bum_A Protocatechuate 3,4-dio 24.7 74 0.0025 23.7 3.8 27 57-83 108-139 (209)
75 3rls_A YAF9, protein AF-9 homo 23.8 2.1E+02 0.0072 20.7 6.3 46 39-86 29-74 (175)
76 3ra3_B P2F; coiled coil domain 23.2 48 0.0016 16.2 1.6 14 1-14 2-15 (28)
77 2bbu_A Suppressor of cytokine 23.0 2E+02 0.0069 20.2 7.0 60 2-67 11-75 (164)
78 2wh6_B BCL-2-like protein 11; 22.6 47 0.0016 16.2 1.5 12 3-14 7-18 (26)
79 2c9w_A Suppressor of cytokine 21.7 2.1E+02 0.0072 20.0 7.2 60 2-68 5-70 (169)
80 3zqs_A E3 ubiquitin-protein li 21.4 1.1E+02 0.0038 22.4 4.1 55 61-118 125-179 (186)
81 4fmh_A VP1; viral capsid prote 21.1 1.1E+02 0.0038 24.0 4.2 63 31-98 183-247 (289)
No 1
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=4.9e-52 Score=307.53 Aligned_cols=147 Identities=63% Similarity=1.119 Sum_probs=142.9
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++||++++++ +++|+++.++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 3 ~~RL~kEl~~l~~~--------------~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 68 (149)
T 2r0j_A 3 PRRITKETQNLANE--------------PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVR 68 (149)
T ss_dssp CHHHHHHHHHHHHS--------------CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeE
Confidence 58999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
|.|++|||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 69 f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 69 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp ECSCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred eccCCccCCCCCCCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 031320 161 G 161 (161)
Q Consensus 161 ~ 161 (161)
|
T Consensus 149 ~ 149 (149)
T 2r0j_A 149 N 149 (149)
T ss_dssp -
T ss_pred C
Confidence 5
No 2
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.8e-51 Score=305.10 Aligned_cols=145 Identities=48% Similarity=0.911 Sum_probs=142.1
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++||++++++ ++.|+++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 6 ~~RL~kEl~~l~~~--------------~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 71 (151)
T 4gpr_A 6 MRRIQKELREIQQD--------------PPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVT 71 (151)
T ss_dssp HHHHHHHHHHHHHS--------------CCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeE
Confidence 48999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
|.|++|||||+.+|.||+++|.++|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 72 f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 72 FMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp ESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred EecCcccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-51 Score=307.38 Aligned_cols=146 Identities=69% Similarity=1.197 Sum_probs=140.7
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.|||++||++++++ +++|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 7 ~~RL~kEl~~l~~~--------------~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~ 72 (154)
T 2c2v_B 7 PRRIIKETQRLLAE--------------PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR 72 (154)
T ss_dssp CHHHHHHHHHHHHS--------------CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEE
Confidence 48999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
|.|++|||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 73 f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 73 FMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp ECSCCCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred eecCcccCcCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
No 4
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=9.7e-51 Score=305.38 Aligned_cols=144 Identities=51% Similarity=0.924 Sum_probs=140.8
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.|||++||++++++ +++|+++.++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 23 ~~RL~kEl~~l~~~--------------~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 88 (166)
T 2ayv_A 23 LKRINKELNDLSKD--------------PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVN 88 (166)
T ss_dssp HHHHHHHHHHHHHS--------------CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceee
Confidence 37999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
|.|+||||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||
T Consensus 89 F~T~i~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 89 FTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp ECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred eccCCcCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=8e-51 Score=301.26 Aligned_cols=145 Identities=47% Similarity=0.873 Sum_probs=141.5
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++|+++++++ +++|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 6 ~~RL~kEl~~l~~~--------------~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 71 (150)
T 1z2u_A 6 LKRIQKELQDLGRD--------------PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVA 71 (150)
T ss_dssp HHHHHHHHHHHHHS--------------CCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEE
Confidence 38999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
|.|+||||||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 72 f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 72 FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp ESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred EecCcccCcCCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
No 6
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-51 Score=305.18 Aligned_cols=144 Identities=36% Similarity=0.702 Sum_probs=140.8
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++||++++++ +++|+++.++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 15 ~~RL~kEl~~l~~~--------------~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 80 (158)
T 1zdn_A 15 IRLVYKEVTTLTAD--------------PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGY 80 (158)
T ss_dssp HHHHHHHHHHHHHS--------------CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEE
Confidence 38999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
|.|++|||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||
T Consensus 81 f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 81 FLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp ESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred eccCcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.2e-50 Score=304.56 Aligned_cols=145 Identities=48% Similarity=0.878 Sum_probs=141.6
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.|||++|+++++++ +++|+++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 21 ~~RL~kEl~~l~~~--------------~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~ 86 (165)
T 2c4o_A 21 LKRIHKELNDLARD--------------PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA 86 (165)
T ss_dssp HHHHHHHHHHHHSS--------------CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEE
Confidence 37999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
|.|+||||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 87 F~T~i~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 87 FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp ECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred EecCCcCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
No 8
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=4.7e-51 Score=302.19 Aligned_cols=145 Identities=40% Similarity=0.803 Sum_probs=140.7
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCC-CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
+|||++|+++++++ +++|+++.+.++ |+++|+++|.||+||||+||+|+++|.||++||++||+|
T Consensus 3 ~~RL~~El~~l~~~--------------~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v 68 (149)
T 1fxt_A 3 AKRIMKEIQAVKDD--------------PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKM 68 (149)
T ss_dssp HHHHHHHHHHHHHC--------------GGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEE
Confidence 37999999999888 678999999887 999999999999999999999999999999999999999
Q ss_pred EEeeccccccccC-CCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 80 RFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 80 ~f~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
+|.|++|||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 69 ~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a 148 (149)
T 1fxt_A 69 QFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 (149)
T ss_dssp EESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHC
T ss_pred EEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 031320 159 S 159 (161)
Q Consensus 159 ~ 159 (161)
+
T Consensus 149 ~ 149 (149)
T 1fxt_A 149 S 149 (149)
T ss_dssp C
T ss_pred C
Confidence 6
No 9
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-50 Score=304.98 Aligned_cols=144 Identities=38% Similarity=0.747 Sum_probs=141.2
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||+++++. +++|+++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|
T Consensus 7 ~RL~kEl~~l~~~--------------~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F 72 (169)
T 1ayz_A 7 RRLMRDFKRMKED--------------APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKF 72 (169)
T ss_dssp HHHHHHHHHHHHS--------------CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCcccc
Confidence 7999999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
.|+||||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 73 ~t~i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 73 LSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp SSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccCCccCCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
No 10
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=7.8e-51 Score=302.85 Aligned_cols=146 Identities=62% Similarity=1.126 Sum_probs=142.5
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++|+++++++ +++|+++.++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 7 ~~RL~kE~~~l~~~--------------~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 72 (155)
T 1jat_A 7 PKRIIKETEKLVSD--------------PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVR 72 (155)
T ss_dssp CHHHHHHHHHHHHS--------------CCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcce
Confidence 58999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
|.|++|||||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 73 f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 73 FLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp ECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred eecccccCCCCCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
No 11
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2.3e-50 Score=299.39 Aligned_cols=145 Identities=35% Similarity=0.732 Sum_probs=141.2
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++|+++++++ +++|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|
T Consensus 7 ~RL~~E~~~l~~~--------------~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 72 (152)
T 2aak_A 7 KRLMRDFKRLQQD--------------PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72 (152)
T ss_dssp HHHHHHHHHHHHS--------------CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEE
Confidence 7999999999887 78899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|++|||||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 73 ~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 73 VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp SSCCCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred ecCcccCCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
No 12
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-50 Score=302.99 Aligned_cols=146 Identities=47% Similarity=0.849 Sum_probs=142.2
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++||++++++ +++|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 6 ~~RL~kEl~~l~~~--------------~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~ 71 (169)
T 1yh2_A 6 ASRLKRELHMLATE--------------PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIR 71 (169)
T ss_dssp HHHHHHHHHHHHHS--------------CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEE
Confidence 38999999999887 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCC----CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Q 031320 81 FLTKIYHPNIDKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRL 156 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~----~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~ 156 (161)
|.|++|||||+.+|.||+++|. +.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++
T Consensus 72 f~t~i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~ 151 (169)
T 1yh2_A 72 FLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 151 (169)
T ss_dssp ESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eecCCccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q 031320 157 YASD 160 (161)
Q Consensus 157 ~a~~ 160 (161)
||+.
T Consensus 152 ~a~~ 155 (169)
T 1yh2_A 152 HARQ 155 (169)
T ss_dssp HSCC
T ss_pred Hccc
Confidence 9975
No 13
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=4.6e-50 Score=298.96 Aligned_cols=144 Identities=38% Similarity=0.686 Sum_probs=140.8
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||+++++. +++|+++.|+++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|
T Consensus 12 ~RL~kEl~~l~~~--------------~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 77 (156)
T 2e2c_A 12 KRLQQELRTLLMS--------------GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKF 77 (156)
T ss_dssp HHHHHHHHHHHHH--------------CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEE
Confidence 7999999999887 78899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|++|||||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|.++||+|+++||.+
T Consensus 78 ~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 78 TTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp SSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred eCCcccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999 89999999999999999976
No 14
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=8.8e-50 Score=299.57 Aligned_cols=146 Identities=32% Similarity=0.619 Sum_probs=140.7
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCC-CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
+|||++||++++++ +++|+++.+.++ |+++|+++|.||+||||+||+|+++|.||++||++||+|
T Consensus 5 ~~RL~kEl~~l~~~--------------~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v 70 (164)
T 3h8k_A 5 LKRLMAEYKQLTLN--------------PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKM 70 (164)
T ss_dssp HHHHHHHHHHHHHS--------------CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEE
Confidence 38999999999887 889999999766 999999999999999999999999999999999999999
Q ss_pred EEeeccccccccCCCceEeccCC-------------CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHH
Q 031320 80 RFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEA 146 (161)
Q Consensus 80 ~f~t~i~HPnV~~~G~ic~~~l~-------------~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f 146 (161)
+|.|++|||||+.+|.||+++|. +.|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|
T Consensus 71 ~f~t~i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f 150 (164)
T 3h8k_A 71 RFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQF 150 (164)
T ss_dssp EECSCCCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHH
T ss_pred EEcCCCccCCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHH
Confidence 99999999999999999999996 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 031320 147 VETAKEWTRLYASD 160 (161)
Q Consensus 147 ~~~a~~~~~~~a~~ 160 (161)
.++||+|++++++.
T Consensus 151 ~~~~~~~~~~s~~~ 164 (164)
T 3h8k_A 151 YKIAKQIVQKSLGL 164 (164)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999863
No 15
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=6.4e-50 Score=299.02 Aligned_cols=148 Identities=42% Similarity=0.786 Sum_probs=141.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||+++++.. ..++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|
T Consensus 11 ~RL~kEl~~l~~~~-----------~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 79 (159)
T 2bep_A 11 QRIKREFKEVLKSE-----------ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF 79 (159)
T ss_dssp HHHHHHHHHHHHCH-----------HHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred HHHHHHHHHHHhcC-----------CCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEe
Confidence 79999999998852 0157899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccC-CCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 82 LTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 82 ~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|+||||||+. +|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 80 ~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 80 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp SSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred eCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 99999999995 99999999999999999999999999999999999999999999999999999999999999999975
No 16
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1e-49 Score=298.95 Aligned_cols=145 Identities=32% Similarity=0.613 Sum_probs=139.6
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCC-----CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCC
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 75 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~ 75 (161)
+|||++||++++++ +++|+++.|.++ |+++|+++|.||+||||+||+|+++|.||++||++
T Consensus 12 ~~RL~kEl~~l~~~--------------~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~ 77 (163)
T 3rcz_B 12 KTRLQEERKQWRRD--------------HPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTR 77 (163)
T ss_dssp HHHHHHHHHHHHHS--------------CCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTS
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCC
Confidence 38999999999988 899999999765 99999999999999999999999999999999999
Q ss_pred CCeEEEeeccccccccCCCceEeccCCC--CCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Q 031320 76 APKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153 (161)
Q Consensus 76 pP~v~f~t~i~HPnV~~~G~ic~~~l~~--~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~ 153 (161)
||+|+|.|++|||||+.+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 78 pP~v~F~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~ 157 (163)
T 3rcz_B 78 PPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQ 157 (163)
T ss_dssp CCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999975 49999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 031320 154 TRLYAS 159 (161)
Q Consensus 154 ~~~~a~ 159 (161)
+++||.
T Consensus 158 ~~~ya~ 163 (163)
T 3rcz_B 158 ARENAP 163 (163)
T ss_dssp HHHTCC
T ss_pred HHHhCc
Confidence 999984
No 17
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=2.3e-49 Score=304.37 Aligned_cols=144 Identities=46% Similarity=0.793 Sum_probs=141.0
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||++++++ +++|+++.+.++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|
T Consensus 51 ~RL~kEl~~l~~~--------------~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F 116 (194)
T 3bzh_A 51 KRIQKELADITLD--------------PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTF 116 (194)
T ss_dssp HHHHHHHHHHHHS--------------CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccc
Confidence 7999999999877 88999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
.|+||||||+.+|.||+++|.+.|+|+++|.+||.+|++||.+||+++|+|.+||++|.+|+++|.++||+|+++||+
T Consensus 117 ~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 117 RTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp SSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred cCCCccceECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
No 18
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-49 Score=298.01 Aligned_cols=144 Identities=32% Similarity=0.640 Sum_probs=139.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCC-CCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
|||++||+++++. +++|+++.+.+ +|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 7 ~RL~kEl~~l~~~--------------~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~ 72 (165)
T 2ucz_A 7 KRLLKELQQLIKD--------------SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLT 72 (165)
T ss_dssp HHHHHHHHHHHHS--------------CCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEE
Confidence 8999999999877 88999999975 79999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccC-------------CCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHH
Q 031320 81 FLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAV 147 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l-------------~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~ 147 (161)
|.|++|||||+.+|.||+++| .+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.
T Consensus 73 f~t~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~ 152 (165)
T 2ucz_A 73 FTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152 (165)
T ss_dssp ESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHH
T ss_pred EeCCCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHH
Confidence 999999999999999999999 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 031320 148 ETAKEWTRLYAS 159 (161)
Q Consensus 148 ~~a~~~~~~~a~ 159 (161)
++||+|+++++.
T Consensus 153 ~~v~~~~~~~~~ 164 (165)
T 2ucz_A 153 RQVKLSILKSLG 164 (165)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999999985
No 19
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-49 Score=305.18 Aligned_cols=158 Identities=42% Similarity=0.716 Sum_probs=138.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||++++++....... -........|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|
T Consensus 35 ~RL~kEl~~l~k~~~~~~~~-p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F 113 (193)
T 2f4z_A 35 ARLLKELADIQQLQRAHDSE-PAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKF 113 (193)
T ss_dssp HHHHHHHHHHHHC-----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHhCCCccccc-cccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEE
Confidence 79999999999873100000 00000013799999999999999999999999999999999999999999999999999
Q ss_pred eecccccccc-CCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 82 LTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 82 ~t~i~HPnV~-~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|+||||||+ .+|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 114 ~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~~ 193 (193)
T 2f4z_A 114 VTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193 (193)
T ss_dssp SSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred ecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 9999999999 589999999999999999999999999999999999999999999999999999999999999999973
No 20
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.3e-49 Score=310.10 Aligned_cols=146 Identities=47% Similarity=0.833 Sum_probs=141.5
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.|||++||+++++. +++|+++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 25 ~~RL~kEl~~l~~~--------------~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~ 90 (216)
T 2pwq_A 25 LLRLQKELKDIENE--------------NVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIK 90 (216)
T ss_dssp HHHHHHHHHHHHHS--------------CTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCccc
Confidence 37999999999887 7899999999999999999999999999999999999999999999999999
Q ss_pred Eeecccccccc-CCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 81 FLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 81 f~t~i~HPnV~-~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
|.|+||||||+ .+|.||+++|.+.|+|+++|.+||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 91 F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~ 170 (216)
T 2pwq_A 91 FVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFAT 170 (216)
T ss_dssp ESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999999 58999999999899999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 031320 160 D 160 (161)
Q Consensus 160 ~ 160 (161)
.
T Consensus 171 ~ 171 (216)
T 2pwq_A 171 G 171 (216)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=2.5e-49 Score=295.32 Aligned_cols=145 Identities=27% Similarity=0.597 Sum_probs=139.4
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCC-----CCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCC
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 75 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~ 75 (161)
+|||++|+++++++ +++|+++.|.+ +|+++|+++|.||+||||+||+|+++|.||++||++
T Consensus 6 ~~RL~kE~~~l~~~--------------~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~ 71 (157)
T 2gjd_A 6 LQRLQEERKKWRKD--------------HPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSK 71 (157)
T ss_dssp HHHHHHHHHHHHHC--------------CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTS
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCC
Confidence 38999999999988 88999999864 489999999999999999999999999999999999
Q ss_pred CCeEEEeeccccccccCCCceEeccCCC--CCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Q 031320 76 APKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEW 153 (161)
Q Consensus 76 pP~v~f~t~i~HPnV~~~G~ic~~~l~~--~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~ 153 (161)
||+|+|.|++|||||+.+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 72 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~ 151 (157)
T 2gjd_A 72 PPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQ 151 (157)
T ss_dssp CCEEECCTTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCeeeccCCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999999999999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 031320 154 TRLYAS 159 (161)
Q Consensus 154 ~~~~a~ 159 (161)
+++||+
T Consensus 152 ~~~~a~ 157 (157)
T 2gjd_A 152 AKQYSK 157 (157)
T ss_dssp HHHTBC
T ss_pred HHHhcC
Confidence 999996
No 22
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=6.3e-49 Score=303.66 Aligned_cols=149 Identities=42% Similarity=0.784 Sum_probs=141.7
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++||++++++. ..++.|+++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 7 ~~Rl~kEl~~l~~~~-----------~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 75 (201)
T 3k9o_A 7 VQRIKREFKEVLKSE-----------ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR 75 (201)
T ss_dssp HHHHHHHHHHHHTCH-----------HHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHhCC-----------CCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccc
Confidence 389999999998862 014689999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccC-CCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 81 FLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 81 f~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
|.|+||||||+. +|.||+++|.+.|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 76 f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 155 (201)
T 3k9o_A 76 FITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 155 (201)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred cccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 999999999995 9999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 031320 160 D 160 (161)
Q Consensus 160 ~ 160 (161)
+
T Consensus 156 ~ 156 (201)
T 3k9o_A 156 A 156 (201)
T ss_dssp C
T ss_pred c
Confidence 5
No 23
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=6.7e-49 Score=292.35 Aligned_cols=144 Identities=31% Similarity=0.609 Sum_probs=140.2
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEE-EeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISA-SPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~-~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
|||++||++++++ +++|+++ .++++|+++|+++|. |+||||+||+|+++|.||++||++||+|+
T Consensus 7 ~RL~kEl~~l~~~--------------~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~ 71 (155)
T 1wzv_A 7 MRVVKELEDLQKK--------------PPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIK 71 (155)
T ss_dssp HHHHHHHHHHHHS--------------CCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcce
Confidence 8999999999888 7789999 789999999999999 99999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccC-CCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 81 FLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l-~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
|.|++|||||+.+|.||+++| .+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 72 f~t~i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 72 FTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp ESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred eeCCCccCcCCCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999 8999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 031320 160 D 160 (161)
Q Consensus 160 ~ 160 (161)
.
T Consensus 152 ~ 152 (155)
T 1wzv_A 152 D 152 (155)
T ss_dssp E
T ss_pred c
Confidence 4
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=5.6e-49 Score=294.48 Aligned_cols=145 Identities=30% Similarity=0.616 Sum_probs=138.9
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCC-----CCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCC
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSA 76 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~p 76 (161)
|||++|+++++++ +++|+.+.|.. +|+++|+++|.||+||||+||+|+++|.||++||++|
T Consensus 10 ~RL~kE~~~l~~~--------------~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~P 75 (161)
T 2grr_A 10 SRLAQERKAWRKD--------------HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSP 75 (161)
T ss_dssp HHHHHHHHHHHHS--------------CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSC
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCC
Confidence 8999999999887 78899998853 6899999999999999999999999999999999999
Q ss_pred CeEEEeeccccccccCCCceEeccCCC--CCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 031320 77 PKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 154 (161)
Q Consensus 77 P~v~f~t~i~HPnV~~~G~ic~~~l~~--~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~ 154 (161)
|+|+|.|++|||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||
T Consensus 76 P~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~ 155 (161)
T 2grr_A 76 PKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQA 155 (161)
T ss_dssp CEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CEEEEecCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence 999999999999999999999999975 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 031320 155 RLYASD 160 (161)
Q Consensus 155 ~~~a~~ 160 (161)
++||++
T Consensus 156 ~~~a~~ 161 (161)
T 2grr_A 156 KKFAPS 161 (161)
T ss_dssp HHTCC-
T ss_pred HHHhcC
Confidence 999974
No 25
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.3e-49 Score=298.58 Aligned_cols=144 Identities=40% Similarity=0.614 Sum_probs=140.0
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||+++++. +++|+++.|+++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|
T Consensus 33 ~RL~kEl~~l~~~--------------~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F 98 (179)
T 1i7k_A 33 KRLQQELMTLMMS--------------GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98 (179)
T ss_dssp HHHHHHHHHHHHH--------------CCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEE
Confidence 7999999999888 78999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|++|||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++| +|+++|.++|++++++++++
T Consensus 99 ~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 99 LTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp SSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred ecCCccCccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999864
No 26
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=3.8e-48 Score=291.51 Aligned_cols=143 Identities=28% Similarity=0.578 Sum_probs=137.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEe-CCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
|||++||++++++ +++|+++.+ +++|++.|.++| ||++|||+||+|+++|.||++||++||+|+
T Consensus 17 ~RL~kEl~~l~~~--------------~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 81 (167)
T 3fn1_B 17 KLLVKEVAELEAN--------------LPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVK 81 (167)
T ss_dssp HHHHHHHHHHGGG--------------SCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeE
Confidence 8999999999988 889999996 567899999998 899999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCC------CCCcccCHHHHHHHHHHHhcC-CCCCCcccHHHHHHHHHCHHHHHHHHHHH
Q 031320 81 FLTKIYHPNIDKLGRICLDILKD------KWSPALQIRTVLLSIQALLSA-PNPDDPLSDNIAKHWKADETEAVETAKEW 153 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~------~W~p~~~i~~il~~l~~ll~~-p~~~~p~n~~aa~~y~~~~~~f~~~a~~~ 153 (161)
|.|++|||||+.+|.||+++|.. +|+|+++|++||.+|+++|.+ ||+++|+|.+||++|++|+++|.++||+|
T Consensus 82 f~t~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~ 161 (167)
T 3fn1_B 82 CLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDY 161 (167)
T ss_dssp ECSCCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred ecCCcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999999999999999975 799999999999999999999 79999999999999999999999999999
Q ss_pred HHHHhc
Q 031320 154 TRLYAS 159 (161)
Q Consensus 154 ~~~~a~ 159 (161)
+++||+
T Consensus 162 ~~~~A~ 167 (167)
T 3fn1_B 162 IKRYAR 167 (167)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 999996
No 27
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=7.8e-49 Score=305.54 Aligned_cols=146 Identities=39% Similarity=0.803 Sum_probs=140.5
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCC-CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
.|||++||++++++ +++|+++.|.++ ++++|+++|.||+||||+||+|+++|.||++||++||+|
T Consensus 4 ~~RL~kEl~~l~~~--------------~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V 69 (215)
T 1tte_A 4 AKRIMKEIQAVKDD--------------PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKM 69 (215)
T ss_dssp HHHHHHHHHHHHTT--------------TCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcc
Confidence 38999999999887 889999999776 466999999999999999999999999999999999999
Q ss_pred EEeeccccccccC-CCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 80 RFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 80 ~f~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
+|.|+||||||+. +|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 70 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA 149 (215)
T 1tte_A 70 QFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149 (215)
T ss_dssp EETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSS
T ss_pred cccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 031320 159 SD 160 (161)
Q Consensus 159 ~~ 160 (161)
++
T Consensus 150 ~~ 151 (215)
T 1tte_A 150 SE 151 (215)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 28
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=8.4e-48 Score=305.95 Aligned_cols=148 Identities=42% Similarity=0.786 Sum_probs=141.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||++++++. ..++.|+++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|
T Consensus 60 ~RL~kEl~~l~~~~-----------~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F 128 (253)
T 3e46_A 60 QRIKREFKEVLKSE-----------ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF 128 (253)
T ss_dssp HHHHHHHHHHHHCH-----------HHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred HHHHHHHHHHHhCC-----------CCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeee
Confidence 79999999998762 0146899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccC-CCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 82 LTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 82 ~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.|+||||||+. +|.||+++|.+.|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 129 ~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 129 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp SSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred cCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999995 99999999999999999999999999999999999999999999999999999999999999999975
No 29
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.7e-48 Score=289.40 Aligned_cols=143 Identities=33% Similarity=0.685 Sum_probs=136.4
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.|||++||+++++. |+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 4 ~~Rl~kEl~~l~~~-----------------~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 66 (152)
T 2onu_A 4 LTRKQCDFTKLIMA-----------------GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIG 66 (152)
T ss_dssp CCHHHHTHHHHHHH-----------------TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHhcCcC-----------------CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEE
Confidence 48999999998654 6788888999999999999999999999999999999999999999999
Q ss_pred EeeccccccccC-CCceEeccCCCCCCcccCHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 81 FLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 81 f~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~-l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
|.|++|||||+. +|.||+++|.+.|+|+++|.+||.+ |++||.+||+++|+|.+||++|++|+++|.++||+|+++||
T Consensus 67 f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a 146 (152)
T 2onu_A 67 FMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146 (152)
T ss_dssp ESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred EecCCccCcCcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 999999999995 9999999999899999999999999 68999999999999999999999999999999999999999
Q ss_pred cC
Q 031320 159 SD 160 (161)
Q Consensus 159 ~~ 160 (161)
+.
T Consensus 147 ~~ 148 (152)
T 2onu_A 147 SK 148 (152)
T ss_dssp CG
T ss_pred cC
Confidence 74
No 30
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.9e-47 Score=291.53 Aligned_cols=145 Identities=33% Similarity=0.624 Sum_probs=138.4
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEE-eCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~-p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
.|||++||++++++ +++|+++. ++++|+++|+++|.||+||||+||+|+++|.||++||++||+|
T Consensus 9 ~kRL~kEl~~l~~~--------------~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v 74 (183)
T 3rz3_A 9 QKALLLELKGLQEE--------------PVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAF 74 (183)
T ss_dssp HHHHHHHHHHHHHS--------------CCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCee
Confidence 38999999999887 88999999 6788999999999999999999999999999999999999999
Q ss_pred EEeeccccccccCCCceEeccCC-------------CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-----
Q 031320 80 RFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKA----- 141 (161)
Q Consensus 80 ~f~t~i~HPnV~~~G~ic~~~l~-------------~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~----- 141 (161)
+|.|++|||||+++|.||+++|. +.|+|+++|++||.+|+++|.+||+++|+|.+||++|++
T Consensus 75 ~f~t~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~ 154 (183)
T 3rz3_A 75 RFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 154 (183)
T ss_dssp EESSCCCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTT
T ss_pred EecCCCccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhccccc
Confidence 99999999999999999999996 789999999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHHHhc
Q 031320 142 -DETEAVETAKEWTRLYAS 159 (161)
Q Consensus 142 -~~~~f~~~a~~~~~~~a~ 159 (161)
|+++|.++||++|++++.
T Consensus 155 ~~~~~y~~~v~~~v~~s~~ 173 (183)
T 3rz3_A 155 GKDREYTDIIRKQVLGTKV 173 (183)
T ss_dssp TCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 789999999999999874
No 31
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=7.2e-48 Score=286.52 Aligned_cols=145 Identities=32% Similarity=0.688 Sum_probs=136.2
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEe-CCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
.|||++||++++++ +++|+.+.+ +++|+++|+++|. |+||||+||+|+++|.||++||++||+|
T Consensus 4 ~~RL~kEl~~l~~~--------------~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v 68 (154)
T 1c4z_D 4 SRRLMKELEEIRKC--------------GMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKI 68 (154)
T ss_dssp CTTHHHHHTTCSSS--------------CCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEE
Confidence 48999999999888 778998654 7789999999998 9999999999999999999999999999
Q ss_pred EEeeccccccccCCCceEeccCC-CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 80 RFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 80 ~f~t~i~HPnV~~~G~ic~~~l~-~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
+|.|++|||||+.+|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 69 ~f~t~i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a 148 (154)
T 1c4z_D 69 TFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148 (154)
T ss_dssp EESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC-
T ss_pred EEeCCCccccCCCCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999996 89999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 031320 159 SD 160 (161)
Q Consensus 159 ~~ 160 (161)
++
T Consensus 149 ~~ 150 (154)
T 1c4z_D 149 EK 150 (154)
T ss_dssp --
T ss_pred cc
Confidence 74
No 32
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-47 Score=287.67 Aligned_cols=140 Identities=26% Similarity=0.507 Sum_probs=135.0
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++|+++++++ +++|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|
T Consensus 26 ~RL~kEl~~l~~~--------------~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F 91 (169)
T 1yrv_A 26 LLLHRDFCDLKEN--------------NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKF 91 (169)
T ss_dssp HHHHHHHHHHHHH--------------CCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCccee
Confidence 7999999999887 78999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccc-cCCCceEeccCC--CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Q 031320 82 LTKIYHPNI-DKLGRICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRL 156 (161)
Q Consensus 82 ~t~i~HPnV-~~~G~ic~~~l~--~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~ 156 (161)
.|+|||||| +.+|.||+++|. +.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++ |++|++
T Consensus 92 ~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 92 ITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp SSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred cCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 999999999 889999999998 89999999999999999999999999999999999999999999999 888864
No 33
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=2.5e-47 Score=288.27 Aligned_cols=138 Identities=35% Similarity=0.764 Sum_probs=105.9
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCC-CCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
|||++||++++++ +++|+++.|.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+
T Consensus 20 ~rL~kEl~~l~~~--------------~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~ 85 (172)
T 2awf_A 20 LLLRRQLAELNKN--------------PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMK 85 (172)
T ss_dssp HHHHHHHHHHHHS--------------CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCccc
Confidence 8999999999887 88999999965 79999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCC-------------CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHH-HH
Q 031320 81 FLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET-EA 146 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~-------------~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~-~f 146 (161)
|.|+||||||+.+|.||+++|. +.|+|+++|++||.+|+++|.+||+++|+|.+||++|++|++ +|
T Consensus 86 F~T~i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f 165 (172)
T 2awf_A 86 FITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEF 165 (172)
T ss_dssp ECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------
T ss_pred ccCCCccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHH
Confidence 9999999999999999999996 689999999999999999999999999999999999999999 99
Q ss_pred HHHHHHH
Q 031320 147 VETAKEW 153 (161)
Q Consensus 147 ~~~a~~~ 153 (161)
.++||+|
T Consensus 166 ~~~vr~~ 172 (172)
T 2awf_A 166 KRKVARC 172 (172)
T ss_dssp -------
T ss_pred HHHHHhC
Confidence 9999986
No 34
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=2e-46 Score=283.37 Aligned_cols=148 Identities=28% Similarity=0.499 Sum_probs=136.8
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCC-----CC---CeEEEe-CCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCC
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNT-----AP---GISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 71 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~-----~~---~~~~~p-~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~ 71 (161)
+|||++||+++++..- .+ +. ++.+.| +++|+++|+++|.||+||||+||+|+++|.||++
T Consensus 8 ~~RL~kEl~~l~~~~~-----------~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~ 76 (172)
T 2y9m_A 8 MSRIVKEYKVILKTLA-----------SDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSS 76 (172)
T ss_dssp HHHHHHHHHHHHHHHT-----------CCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTT
T ss_pred HHHHHHHHHHHHhccC-----------CcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCc
Confidence 3799999999988410 01 33 567888 8889999999999999999999999999999999
Q ss_pred CCCCCCeEEEee-cccccccc-CCCceEeccCC-CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-CHHHHH
Q 031320 72 YPMSAPKVRFLT-KIYHPNID-KLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKA-DETEAV 147 (161)
Q Consensus 72 yP~~pP~v~f~t-~i~HPnV~-~~G~ic~~~l~-~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~-~~~~f~ 147 (161)
||++||+|+|.| +||||||+ .+|.||+++|. +.|+|+++|++||.+|+++|.+|++++|+|.+||++|++ |+++|.
T Consensus 77 YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~ 156 (172)
T 2y9m_A 77 YPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQ 156 (172)
T ss_dssp TTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHH
T ss_pred CCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHH
Confidence 999999999999 99999995 79999999998 899999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhc
Q 031320 148 ETAKEWTRLYAS 159 (161)
Q Consensus 148 ~~a~~~~~~~a~ 159 (161)
++||+|+++++.
T Consensus 157 ~~~~~~~~~~~~ 168 (172)
T 2y9m_A 157 GIVKYFLAERER 168 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999984
No 35
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-46 Score=280.74 Aligned_cols=138 Identities=28% Similarity=0.563 Sum_probs=133.0
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEE-eCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~-p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
|||++||+++ + +++|+++. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+
T Consensus 9 ~RL~kEl~~l--~--------------~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 71 (160)
T 1y8x_A 9 LRIQKDINEL--N--------------LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVK 71 (160)
T ss_dssp HHHHHHHHTC--C--------------CCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHhc--C--------------CCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEE
Confidence 7999999998 3 56899998 7899999999998 999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRL 156 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~ 156 (161)
|.|++|||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus 72 f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 72 CETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp ECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred EecCCccCcCCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
No 36
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-47 Score=290.10 Aligned_cols=140 Identities=32% Similarity=0.671 Sum_probs=133.8
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||++++. +|+++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|
T Consensus 28 ~RL~kEl~~l~~-----------------~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F 89 (179)
T 2z5d_A 28 RRMDTDVIKLIE-----------------SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGF 89 (179)
T ss_dssp HHHHHHHHHHHH-----------------SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHhcCc-----------------CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEE
Confidence 799999999863 36778887 578999999999999999999999999999999999999999
Q ss_pred eeccccccccC-CCceEeccCCCCCCcccCHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 82 LTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 82 ~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~-l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
.|+||||||+. +|.||+++|.+.|+|+++|++||.+ |+++|.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 90 ~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 90 MNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp SSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred ecCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 99999999998 9999999999999999999999999 999999999999999999999999999999999999999996
No 37
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=5e-46 Score=313.05 Aligned_cols=146 Identities=47% Similarity=0.846 Sum_probs=142.9
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
+|||++||++++++ +++|+++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 5 ~~RL~kEl~~l~~~--------------~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 70 (399)
T 4ddg_A 5 LKRIHKELNDLARD--------------PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA 70 (399)
T ss_dssp HHHHHHHHHHHHHS--------------CCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEE
Confidence 48999999999988 8899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
|.|++|||||+.+|.||+++|.++|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 71 f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 71 FTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp ESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred eeccccccccCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4e-46 Score=283.48 Aligned_cols=139 Identities=27% Similarity=0.523 Sum_probs=133.5
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEE-eCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~-p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
|||++||+++ + +++|+++. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+
T Consensus 29 ~RL~kEl~~l--~--------------~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~ 91 (180)
T 2nvu_C 29 LRIQKDINEL--N--------------LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVK 91 (180)
T ss_dssp HHHHHHHHTC--C--------------CCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHhc--C--------------CCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCc
Confidence 7999999998 3 56899998 8899999999998 999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHH
Q 031320 81 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 157 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~ 157 (161)
|.|++|||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++..
T Consensus 92 F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~ 168 (180)
T 2nvu_C 92 CETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168 (180)
T ss_dssp ECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSE
T ss_pred eeccCccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998853
No 39
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-46 Score=280.41 Aligned_cols=141 Identities=31% Similarity=0.573 Sum_probs=132.7
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.+||++||++++++ + .++ +.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 14 ~~RL~~El~~l~~~--------------~-~~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~ 75 (171)
T 1yf9_A 14 NRRREMDYMRLCNS--------------T-RKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIG 75 (171)
T ss_dssp CHHHHHHHHHHHSS--------------S-SCE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------C-CCC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEE
Confidence 37999999999887 3 233 35789999999999999999999999999999999999999999
Q ss_pred EeeccccccccC-CCceEeccCCCCCCcccCHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 031320 81 FLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 158 (161)
Q Consensus 81 f~t~i~HPnV~~-~G~ic~~~l~~~W~p~~~i~~il~~l-~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a 158 (161)
|.|+||||||+. +|.||+++|.+.|+|+++|++||.+| ++||.+|++++|+|.+||++|.+|+++|.++||+|+++||
T Consensus 76 F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a 155 (171)
T 1yf9_A 76 FCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155 (171)
T ss_dssp ESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred eecCcccccCcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 999999999995 99999999999999999999999997 7999999999999999999999999999999999999999
Q ss_pred c
Q 031320 159 S 159 (161)
Q Consensus 159 ~ 159 (161)
+
T Consensus 156 ~ 156 (171)
T 1yf9_A 156 T 156 (171)
T ss_dssp C
T ss_pred C
Confidence 6
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.2e-44 Score=277.54 Aligned_cols=141 Identities=32% Similarity=0.570 Sum_probs=132.5
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEE----eCCCCcc---eEEEEEECCCCCCCCCCeEEEEEeCCCCCCC
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISAS----PAEDNMR---YFNVMILGPSQSPYEGGVFKLELFLPEDYPM 74 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~----p~~~n~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~ 74 (161)
|||++||++++ +++|+++. ++++|++ +|+++|. |++|||+||+|++.|.||++||+
T Consensus 32 ~RL~kEl~~l~----------------~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~ 94 (190)
T 3o2u_A 32 IRLKRDLDSLD----------------LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPI 94 (190)
T ss_dssp HHHHHHHHTCC----------------CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTT
T ss_pred HHHHHHHHhcc----------------CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCC
Confidence 68888888775 34789998 8899999 9999997 88899999999999999999999
Q ss_pred CCCeEEEeeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 031320 75 SAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 154 (161)
Q Consensus 75 ~pP~v~f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~ 154 (161)
+||+|+|.|++|||||+.+|.||+++|.++|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+
T Consensus 95 ~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~ 174 (190)
T 3o2u_A 95 EPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTM 174 (190)
T ss_dssp SCCEEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCceeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 031320 155 RLYAS 159 (161)
Q Consensus 155 ~~~a~ 159 (161)
+.+..
T Consensus 175 ~~~~~ 179 (190)
T 3o2u_A 175 SGGSI 179 (190)
T ss_dssp BTCEE
T ss_pred HhcCC
Confidence 76543
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.8e-43 Score=266.03 Aligned_cols=149 Identities=21% Similarity=0.350 Sum_probs=130.2
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCC--CCeEEEEEeCCCCCCCCCCe
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYE--GGVFKLELFLPEDYPMSAPK 78 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~yP~~pP~ 78 (161)
+|||++||++++++.- .+..+-....++.|+.+.++++|+++|+++|.||+||||+ ||.|++.|.||++||++||+
T Consensus 10 ~kRL~kEl~~l~~~~~--~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~ 87 (167)
T 4ds2_A 10 NKRIIKDLKLLLEEVD--ANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPT 87 (167)
T ss_dssp CHHHHHHHHHHHHHHH--HHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHhCcc--cccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCE
Confidence 4899999999998730 0000001112378999999999999999999999999999 99999999999999999999
Q ss_pred EEEeeccccccccCCCceEeccCCCCCCcccCHHHHHH-HHHHHhcC--CCCCCcccHHHHHHHHHCHHHHHHHHH
Q 031320 79 VRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL-SIQALLSA--PNPDDPLSDNIAKHWKADETEAVETAK 151 (161)
Q Consensus 79 v~f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~-~l~~ll~~--p~~~~p~n~~aa~~y~~~~~~f~~~a~ 151 (161)
|+|.|++|||||+.+|.||+++|.++|+|+++++++|. .|++|+.. |++++|+|.|||++|++|+++|.++||
T Consensus 88 v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 88 VRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp EEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred EEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 99999999999999999999999999999999999754 57777775 899999999999999999999999998
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=3.1e-41 Score=275.47 Aligned_cols=145 Identities=27% Similarity=0.516 Sum_probs=135.2
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCC----CeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCC
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAP----GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSA 76 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~----~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~p 76 (161)
+|||++|+++++++ +++ ++.+.++++|++.|+++|.||+||||+||+|++.|.||++||++|
T Consensus 78 ~kRL~kEl~~L~k~--------------~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~P 143 (323)
T 3ceg_A 78 ARRLAQEAVTLSTS--------------LPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSP 143 (323)
T ss_dssp HHHHHHHHHHHHHH--------------CCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSC
T ss_pred HHHHHHHHHHHHhC--------------CCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCC
Confidence 38999999999988 454 567788899999999999999999999999999999999999999
Q ss_pred CeEEEeec-----cccccccCCCceEeccCC-------CCCCccc-CHHHHHHHHHHHhc--CCCCCCcccHHH--HHHH
Q 031320 77 PKVRFLTK-----IYHPNIDKLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLS--APNPDDPLSDNI--AKHW 139 (161)
Q Consensus 77 P~v~f~t~-----i~HPnV~~~G~ic~~~l~-------~~W~p~~-~i~~il~~l~~ll~--~p~~~~p~n~~a--a~~y 139 (161)
|+|+|.|+ +|||||+.+|.||+++|. +.|+|++ +|.+||.+|++||. +|++++|+|.++ +.+|
T Consensus 144 P~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~ 223 (323)
T 3ceg_A 144 PLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSG 223 (323)
T ss_dssp CEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHH
T ss_pred CeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhh
Confidence 99999998 999999999999999997 6899999 89999999999996 677799999987 6899
Q ss_pred HHCHHHHHHHHHHHHHHHhc
Q 031320 140 KADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 140 ~~~~~~f~~~a~~~~~~~a~ 159 (161)
.+|+++|.++||.|+.+||+
T Consensus 224 ~~d~~~Y~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 224 TQSSREYDGNIRQATVKWAM 243 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999996
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=7e-42 Score=254.68 Aligned_cols=127 Identities=24% Similarity=0.445 Sum_probs=116.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCC-C--CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCe
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAE-D--NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPK 78 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~ 78 (161)
|||++||++++++. +++|+++.+.+ + |+++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 24 ~RL~kEl~~l~~~~-------------~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~ 90 (156)
T 2q0v_A 24 FRLLDELERGQKGN-------------VSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPT 90 (156)
T ss_dssp HHHHHHHHHHHCC--------------CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHhCC-------------CCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCe
Confidence 79999999998873 67899999853 3 59999999999999999999999999999999999999
Q ss_pred EEEeeccccccccCCCce---EeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHC
Q 031320 79 VRFLTKIYHPNIDKLGRI---CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKAD 142 (161)
Q Consensus 79 v~f~t~i~HPnV~~~G~i---c~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~ 142 (161)
|+|.|+||||||+.+|.| |+++|. .|+|+++|++||.+|+++|.+|++++|+|.+||++|.+|
T Consensus 91 v~F~t~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 91 VKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp EEESBCCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred EEEEcccccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 999999999999999999 888886 599999999999999999999999999999999999875
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-40 Score=239.59 Aligned_cols=115 Identities=29% Similarity=0.536 Sum_probs=105.4
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.|||++||++++++ +++|+++.++++|+++|+++|.||+||||+||.|+++|.||++||++||+|+
T Consensus 8 ~~RL~kEl~~l~~~--------------~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~ 73 (125)
T 2fo3_A 8 NYRIQKELHNFLNN--------------PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVY 73 (125)
T ss_dssp -CHHHHHHHHHHHS--------------CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEE
Confidence 48999999999887 7889999999999999999999999999999999999999999999999999
Q ss_pred Eeecc-ccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCCCC
Q 031320 81 FLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 129 (161)
Q Consensus 81 f~t~i-~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~ 129 (161)
|.|++ |||||+.+|.||+++|.++|+|+++|++||.+|+++|.+|+...
T Consensus 74 f~t~i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 74 FLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp ECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred EeCCCCCCCcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 99997 99999999999999999999999999999999999999998653
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1e-39 Score=238.11 Aligned_cols=112 Identities=28% Similarity=0.539 Sum_probs=108.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
|||++||++++++ ++.|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|
T Consensus 23 ~RL~kEl~~l~~~--------------~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f 88 (136)
T 2h2y_A 23 YRIQKELNNFLKN--------------PPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYF 88 (136)
T ss_dssp HHHHHHHHHHHHS--------------CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHhC--------------CCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEE
Confidence 7999999999887 78899999999999999999999999999999999999999999999999999
Q ss_pred eecc-ccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhcCCCC
Q 031320 82 LTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 127 (161)
Q Consensus 82 ~t~i-~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~~p~~ 127 (161)
.|++ |||||+.+|.||+++|.+.|+|+++|++||.+|+++|.+|+.
T Consensus 89 ~t~i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 89 LQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CSSCCCCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred eCCCCCCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9997 999999999999999999999999999999999999999874
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=4.5e-40 Score=245.68 Aligned_cols=121 Identities=23% Similarity=0.398 Sum_probs=112.6
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCC-eEEEe-CCCC--cceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCC
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPG-ISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAP 77 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~-~~~~p-~~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP 77 (161)
|||++||++++++ +++| +.+.+ +++| +++|+++|.||++|||+||+|+++|.||++||++||
T Consensus 28 ~RL~kEl~~l~~~--------------~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 93 (160)
T 2a4d_A 28 FRLLEELEEGQKG--------------VGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 93 (160)
T ss_dssp HHHHHHHHHHHSC--------------CTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred HHHHHHHHHHHhC--------------CCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCc
Confidence 7999999999887 6667 78887 4554 899999999999999999999999999999999999
Q ss_pred eEEEeecccccccc-CCCceEeccCC--CCCCcccCHHHHHHHHHHHhc-CCCCCCcccHHHH
Q 031320 78 KVRFLTKIYHPNID-KLGRICLDILK--DKWSPALQIRTVLLSIQALLS-APNPDDPLSDNIA 136 (161)
Q Consensus 78 ~v~f~t~i~HPnV~-~~G~ic~~~l~--~~W~p~~~i~~il~~l~~ll~-~p~~~~p~n~~aa 136 (161)
+|+|.|+||||||+ .+|.||+++|. +.|+|+++|++||.+|+++|. .||+++|+|.|||
T Consensus 94 ~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 94 FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp EEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred EEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 99999999999999 69999999997 899999999999999999995 6999999999987
No 47
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=4.8e-41 Score=245.62 Aligned_cols=124 Identities=25% Similarity=0.409 Sum_probs=112.4
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCC-C--CcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCe
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAE-D--NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPK 78 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~ 78 (161)
|||++||++++++. +++|+++.+.+ + |+++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 9 ~RL~kEl~~l~~~~-------------~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~ 75 (138)
T 1jat_B 9 FRLLEELEKGEKGF-------------GPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPK 75 (138)
T ss_dssp HHHHHHHHHHHC-----------------CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHhcC-------------CCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCc
Confidence 79999999998873 67899999843 3 59999999999999999999999999999999999999
Q ss_pred EEEeeccccccccCC-Cce--EeccCCCCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 031320 79 VRFLTKIYHPNIDKL-GRI--CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHW 139 (161)
Q Consensus 79 v~f~t~i~HPnV~~~-G~i--c~~~l~~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y 139 (161)
|+|.|+||||||+.+ |.| |++++. +|+|+++|++||.+|+++|.+||+++|+|.+|+++|
T Consensus 76 v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 76 VTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp EEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred eEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 999999999999986 999 899885 899999999999999999999999999999998754
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=245.14 Aligned_cols=121 Identities=23% Similarity=0.402 Sum_probs=112.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCC-eEEEe-CCCC--cceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCC
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPG-ISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAP 77 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~-~~~~p-~~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP 77 (161)
|||++||++++++ +++| +.+.+ +++| +++|+++|.||++|||+||+|+++|.||++||++||
T Consensus 38 ~RL~kEl~~l~~~--------------~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 103 (170)
T 2hlw_A 38 FRLLEELEEGQKG--------------VGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 103 (170)
T ss_dssp HHHHHHHHHHHHC--------------CGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCC
T ss_pred HHHHHHHHHHHhC--------------CCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCC
Confidence 7999999999887 6667 77877 4554 999999999999999999999999999999999999
Q ss_pred eEEEeecccccccc-CCCceEeccCC--CCCCcccCHHHHHHHHHHHhcC-CCCCCcccHHHH
Q 031320 78 KVRFLTKIYHPNID-KLGRICLDILK--DKWSPALQIRTVLLSIQALLSA-PNPDDPLSDNIA 136 (161)
Q Consensus 78 ~v~f~t~i~HPnV~-~~G~ic~~~l~--~~W~p~~~i~~il~~l~~ll~~-p~~~~p~n~~aa 136 (161)
+|+|.|+||||||+ .+|.||+++|. +.|+|+++|++||.+|+++|.+ ||+++|+|.|||
T Consensus 104 ~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 104 FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp EEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred eeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 99999999999998 79999999997 8999999999999999999975 999999999987
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-38 Score=232.71 Aligned_cols=108 Identities=31% Similarity=0.631 Sum_probs=103.6
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEE--eCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISAS--PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 79 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~--p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 79 (161)
|||++||++++++ +++|+++. ++++|+++|+++|.||+||||+||+|+++|.||++||++||+|
T Consensus 25 ~RL~kEl~~l~~~--------------~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v 90 (136)
T 2a7l_A 25 KRLQKELLALQND--------------PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQV 90 (136)
T ss_dssp HHHHHHHHHHHHS--------------CCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEE
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEE
Confidence 7999999999888 78899965 8899999999999999999999999999999999999999999
Q ss_pred EEeeccc--cccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhc
Q 031320 80 RFLTKIY--HPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 123 (161)
Q Consensus 80 ~f~t~i~--HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~ 123 (161)
+|.|++| ||||+.+|.||+++|.++|+|+++|++||.+|+++|.
T Consensus 91 ~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 91 MFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp EEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred EEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999999 9999999999999999999999999999999999973
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-36 Score=232.89 Aligned_cols=114 Identities=25% Similarity=0.554 Sum_probs=102.3
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEE
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVR 80 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~ 80 (161)
.|||++||++++++ +++|+++.|+++|+++|+++|.||+||||+||+|+++|.||++||++||+|+
T Consensus 16 ~~RL~kEl~~l~~~--------------~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~ 81 (187)
T 2f4w_A 16 TQRLKQDYLRIKKD--------------PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY 81 (187)
T ss_dssp HHHHHHHHHHHHHS--------------CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccc
Confidence 37999999999887 7899999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCceEeccC---CCCCCcccCHHHHHHHHHHHhcCCCCCCc
Q 031320 81 FLTKIYHPNIDKLGRICLDIL---KDKWSPALQIRTVLLSIQALLSAPNPDDP 130 (161)
Q Consensus 81 f~t~i~HPnV~~~G~ic~~~l---~~~W~p~~~i~~il~~l~~ll~~p~~~~p 130 (161)
|.|+ ||||+.+|.||+++| .+.|+|+++|.+||.+|+++|.+|+++..
T Consensus 82 f~T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 82 MITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp ECSC--CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred ccCC--CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 9999 999999999999999 68999999999999999999999998654
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=9.6e-38 Score=238.35 Aligned_cols=139 Identities=17% Similarity=0.265 Sum_probs=122.2
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECC-CCCCCCC-----------CeEEEEEeC
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGP-SQSPYEG-----------GVFKLELFL 68 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~f 68 (161)
.|||++||++++++.- ..+.|+++.|.++|+++|+++|.|| ++|||+| |+|+++|.|
T Consensus 29 ~~RL~kEl~~l~~~~~-----------~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~f 97 (186)
T 1zuo_A 29 SDRLMKELRDIYRSQS-----------YKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSF 97 (186)
T ss_dssp HHHHHHHHHHHHTSHH-----------HHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHHHHHHHHHhCCC-----------CCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEEC
Confidence 3799999999988720 0167899999999999999999998 9999998 899999999
Q ss_pred CCCCCCCCCeEEEeeccccc-cccCCCceEeccCC-CCCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHH
Q 031320 69 PEDYPMSAPKVRFLTKIYHP-NIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEA 146 (161)
Q Consensus 69 p~~yP~~pP~v~f~t~i~HP-nV~~~G~ic~~~l~-~~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~~~~~f 146 (161)
|++||++||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++.. .|..++++|
T Consensus 98 p~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y 169 (186)
T 1zuo_A 98 KDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQY 169 (186)
T ss_dssp CTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCC
T ss_pred CCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHH
Confidence 99999999999999999999 69999999999996 799999999999999999999987543 344567788
Q ss_pred HHHHHHHHHHHh
Q 031320 147 VETAKEWTRLYA 158 (161)
Q Consensus 147 ~~~a~~~~~~~a 158 (161)
.+.++..+.+.+
T Consensus 170 ~~~~~~~~~~~~ 181 (186)
T 1zuo_A 170 NLARAQQSYNSI 181 (186)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 888887777665
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.92 E-value=4.5e-27 Score=174.26 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=94.9
Q ss_pred ChhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCC----------eEEEEEeCCC
Q 031320 1 MRYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPE 70 (161)
Q Consensus 1 ~rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~ 70 (161)
+|||++|++.+++. +.+.++|.+.|.+.+.||+||+|+|| .|.+++.||+
T Consensus 34 ~~RL~eE~k~L~k~--------------------v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe 93 (172)
T 2z6o_A 34 VQRLKEEYQSLIRY--------------------VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPI 93 (172)
T ss_dssp HHHHHHHHHHHHHH--------------------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCT
T ss_pred HHHHHHHHHHHHHH--------------------hccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCC
Confidence 48999999999885 23446799999999999999999999 9999999999
Q ss_pred CCCCCCCeEEEeec-cccccccCCCceEeccC-CC---CCCcccCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031320 71 DYPMSAPKVRFLTK-IYHPNIDKLGRICLDIL-KD---KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKA 141 (161)
Q Consensus 71 ~yP~~pP~v~f~t~-i~HPnV~~~G~ic~~~l-~~---~W~p~~~i~~il~~l~~ll~~p~~~~p~n~~aa~~y~~ 141 (161)
+||++||+|+|.+. +||||||.+|.||++++ .. .|+|.++|..+|.- -...++..|+..+..+
T Consensus 94 ~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~ 161 (172)
T 2z6o_A 94 TYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK 161 (172)
T ss_dssp TTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred CCCCCCCeeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence 99999999999998 99999999999999999 43 45599999999843 2233455666666544
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.81 E-value=9.3e-20 Score=135.66 Aligned_cols=114 Identities=20% Similarity=0.335 Sum_probs=91.5
Q ss_pred hhcchhhhHHHhhCCCC--CeEEEeCCCCcceEEEEEECCCCCCCCCCe---EEEEEeCCCCCCCCCCeEEEeec-----
Q 031320 15 QLFDNSLCFVISVNTAP--GISASPAEDNMRYFNVMILGPSQSPYEGGV---FKLELFLPEDYPMSAPKVRFLTK----- 84 (161)
Q Consensus 15 ~~~~~~~~~~l~~~~~~--~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~yP~~pP~v~f~t~----- 84 (161)
+...+++...|++.+.- ...+...++...++-+.+.|.-.++|+|+. |.+.|.||.+||++||.|.|.++
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 33445555666655442 223345566667777777777779999999 88999999999999999988651
Q ss_pred -----cc-cccccCCCceEeccCCCCCCc-ccCHHHHHHHHHHHhcCCCCCC
Q 031320 85 -----IY-HPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSAPNPDD 129 (161)
Q Consensus 85 -----i~-HPnV~~~G~ic~~~l~~~W~p-~~~i~~il~~l~~ll~~p~~~~ 129 (161)
|+ |||||.+|+||+++| ..|+| +.++.++|.+|.++|.+|+++.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCccc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 77 999999999999999 57999 6799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.64 E-value=1.1e-17 Score=121.52 Aligned_cols=64 Identities=17% Similarity=0.372 Sum_probs=59.4
Q ss_pred ceEEEEEECCCCCCCCCC----------eEEEEEeCCCCCCCCCCeEEEeec-cccccccCCCceEeccCCCCCCccc
Q 031320 43 RYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLTK-IYHPNIDKLGRICLDILKDKWSPAL 109 (161)
Q Consensus 43 ~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f~t~-i~HPnV~~~G~ic~~~l~~~W~p~~ 109 (161)
..|...+.||.||+|.|+ .|.+++.||.+||.+||+|+|.+. .+|||+|.+|+||+++. |+|.+
T Consensus 58 ~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 58 SHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH---FFPLW 132 (168)
T ss_dssp CCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred CCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc---cchhh
Confidence 469999999999999999 999999999999999999999995 89999999999999987 77665
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.54 E-value=1.9e-14 Score=105.29 Aligned_cols=102 Identities=18% Similarity=0.336 Sum_probs=80.9
Q ss_pred cchhhhHHHhhCCCCCeEEEe---CCCCcceEEEEEECCCCCCCCCCeEEE--EEeCCCCCCCCCCeEEEeec------c
Q 031320 17 FDNSLCFVISVNTAPGISASP---AEDNMRYFNVMILGPSQSPYEGGVFKL--ELFLPEDYPMSAPKVRFLTK------I 85 (161)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~p---~~~n~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~yP~~pP~v~f~t~------i 85 (161)
.-+++...+++-+.-...... ...++..|.++|. .+|+|+.|.+ .|-||.+||++||.| |.++ .
T Consensus 25 t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~ 99 (146)
T 3obq_A 25 TVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK 99 (146)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred hHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence 344566666665542222222 2368899999996 7899999995 899999999999999 6666 4
Q ss_pred ccccccCCCceEeccCCCCCCc-ccCHHHHHHHHHHHhcC
Q 031320 86 YHPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA 124 (161)
Q Consensus 86 ~HPnV~~~G~ic~~~l~~~W~p-~~~i~~il~~l~~ll~~ 124 (161)
.|||||.+|+||++.|. .|++ ..++.+++..|+++|.+
T Consensus 100 ~~~~Vd~~G~i~lpyL~-~W~~~~snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 100 TGKHVDANGKIYLPYLH-EWKHPQSDLLGLIQVMIVVFGD 138 (146)
T ss_dssp CBTTBCTTCBBCCHHHH-TCCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEeccccc-ccCCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999995 4987 78999999999998874
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.84 E-value=0.09 Score=36.35 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=28.7
Q ss_pred cceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEee
Q 031320 42 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 83 (161)
Q Consensus 42 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 83 (161)
...+.+.+..-.+..-+.-.+.+.+.+|++||..||.+...+
T Consensus 37 ~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 37 PPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp SCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 355556664222222234478899999999999999998765
No 57
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=94.82 E-value=0.51 Score=35.27 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=60.3
Q ss_pred hhHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEE
Q 031320 2 RYVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRF 81 (161)
Q Consensus 2 rr~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f 81 (161)
.+|.+|+.++-=+++ ...+.++....+.+..-. |-...++|.++.+||.++|.+..
T Consensus 4 ~~li~Ei~~iGW~~l-------------------~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~ 59 (186)
T 3zqs_A 4 SSLIEEIGTLGWDKL-------------------VYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFV 59 (186)
T ss_dssp CSHHHHHHHHCGGGE-------------------EEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEEC
T ss_pred HHHHHHHHHhCCcee-------------------eeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEE
Confidence 367777777755532 223567889999997543 57888999999999999998876
Q ss_pred eeccccccccCCCceEeccCCCCCCcccCHHHHHHHHHHHhc
Q 031320 82 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 123 (161)
Q Consensus 82 ~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l~~ll~ 123 (161)
.-|+ |- .-.|+|..++.+++...+..+.
T Consensus 60 DlP~--~~------------~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 60 DFPV--PF------------CASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp CCSS--CC------------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred cCCC--Cc------------ccccCCCccHHHHHHHHHHHHH
Confidence 5553 11 1369999998888777666653
No 58
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.23 E-value=0.32 Score=34.95 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCCCCCCeEEEeec
Q 031320 61 VFKLELFLPEDYPMSAPKVRFLTK 84 (161)
Q Consensus 61 ~f~~~i~fp~~yP~~pP~v~f~t~ 84 (161)
.+.+.|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 789999999999999999986653
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.24 Score=34.62 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=29.4
Q ss_pred cceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeec
Q 031320 42 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 84 (161)
Q Consensus 42 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 84 (161)
...+.+.+.+..+ .-..-.+.+.+.+|++||..+|.|.+.+.
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 4556777763222 11234788999999999999999987653
No 60
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.32 E-value=0.23 Score=34.18 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=29.6
Q ss_pred CcceEEEEEECCCCCCCC--CCeEEEEEeCCCCCCCCCCeEEEeec
Q 031320 41 NMRYFNVMILGPSQSPYE--GGVFKLELFLPEDYPMSAPKVRFLTK 84 (161)
Q Consensus 41 n~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~yP~~pP~v~f~t~ 84 (161)
+...+.+.+..+.+..-+ .-.+.+.+.+|++||..+|.|...+.
T Consensus 38 ~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 38 SPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred CCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 345566666532221111 24778999999999999999988763
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.91 E-value=0.39 Score=33.09 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=27.7
Q ss_pred cceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEe
Q 031320 42 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL 82 (161)
Q Consensus 42 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~ 82 (161)
...+.+.+.. .+..=..-.+.+.+.+|++||..+|.+...
T Consensus 39 ~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 39 GTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred CCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 4567777763 221111247889999999999999998654
No 62
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=91.03 E-value=0.041 Score=37.69 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 031320 125 PNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 159 (161)
Q Consensus 125 p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~ 159 (161)
.....|.+.++|++|.++++.|..+||.|+.-+|.
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~ 55 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT 55 (108)
T ss_dssp -----------------------------------
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence 34567899999999999999999999999977664
No 63
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=90.47 E-value=0.19 Score=35.05 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCCCCCCCeEEEee
Q 031320 60 GVFKLELFLPEDYPMSAPKVRFLT 83 (161)
Q Consensus 60 g~f~~~i~fp~~yP~~pP~v~f~t 83 (161)
-.+.+.|.||++||..+|.|...+
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEec
Confidence 468899999999999999998754
No 64
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.42 E-value=0.59 Score=33.25 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCCCCCCeEEEeec
Q 031320 61 VFKLELFLPEDYPMSAPKVRFLTK 84 (161)
Q Consensus 61 ~f~~~i~fp~~yP~~pP~v~f~t~ 84 (161)
.+.+.+.+|.+||..||.+.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999987764
No 65
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.89 E-value=31 Score=28.55 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=29.5
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 3 YVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 3 r~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
...+||++.-...+...++-..+...++.|+ .+.|||||
T Consensus 155 ~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGv--------------LL~GPPGT 193 (405)
T 4b4t_J 155 KQIKEIKEVIELPVKHPELFESLGIAQPKGV--------------ILYGPPGT 193 (405)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHTCCCCCCE--------------EEESCSSS
T ss_pred HHHHHHHHHHHHHHhCHHHHHhCCCCCCCce--------------EEeCCCCC
Confidence 4567888877776667777777777777776 57899998
No 66
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=38.98 E-value=33 Score=21.55 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=34.7
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 118 IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 118 l~~ll~~p~~~~p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
|+.|+..-++...+++++.++..+=.+.|...+-..+.+.|++
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKh 53 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARH 53 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555577788999999999888899999999988888864
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.49 E-value=43 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=27.7
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 3 YVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 3 r~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
.+.++|++.-...+...++...+...++.|+ .+.||+||
T Consensus 216 ~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGI--------------LLyGPPGT 254 (467)
T 4b4t_H 216 DQIEKLREVVELPLLSPERFATLGIDPPKGI--------------LLYGPPGT 254 (467)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHTCCCCSEE--------------EECSCTTS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHCCCCCCCce--------------EeeCCCCC
Confidence 4567777776666666666666666677775 57899998
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.02 E-value=48 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 4 VNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 4 ~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
..+||++.-...+...++-..+...++.|+ .+.|||||
T Consensus 189 ~k~~l~e~v~~pl~~p~~f~~~g~~~prGv--------------LL~GPPGt 226 (437)
T 4b4t_L 189 QIRELREVIELPLKNPEIFQRVGIKPPKGV--------------LLYGPPGT 226 (437)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHCCCCCCEE--------------EEESCTTS
T ss_pred HHHHHHHHHHHHHhCHHHHHhCCCCCCCeE--------------EEECCCCC
Confidence 456677766665555566666666667665 57899998
No 69
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.90 E-value=56 Score=27.06 Aligned_cols=39 Identities=15% Similarity=0.385 Sum_probs=24.8
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 3 YVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 3 r~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
.+.++|++.-...+...++-..+...++.|+ .+.|||||
T Consensus 179 ~~k~~l~e~v~~pl~~p~~~~~~g~~~prGi--------------LL~GPPGt 217 (428)
T 4b4t_K 179 MQKQEIREAVELPLVQADLYEQIGIDPPRGV--------------LLYGPPGT 217 (428)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHCCCCCCEE--------------EEESCTTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHhCCCCCCceE--------------EEECCCCC
Confidence 3456666665555555555555555566664 68899998
No 70
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.62 E-value=53 Score=27.25 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 4 VNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 4 ~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
..++|++.-...+...++-..+...++.|+ .+.|||||
T Consensus 189 ~k~~l~e~v~~pl~~pe~f~~~g~~~prGv--------------LLyGPPGT 226 (434)
T 4b4t_M 189 QIEELVEAIVLPMKRADKFKDMGIRAPKGA--------------LMYGPPGT 226 (434)
T ss_dssp HHHHHHHHTHHHHHCSHHHHHHCCCCCCEE--------------EEESCTTS
T ss_pred HHHHHHHHHHHHHhCHHHHHhCCCCCCCee--------------EEECcCCC
Confidence 455666655554444444445555555554 68899998
No 71
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=27.12 E-value=73 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=29.3
Q ss_pred CcceEEEEEECCCCC-------------CCCCCeEEEEEeCCCCCCCCCCe
Q 031320 41 NMRYFNVMILGPSQS-------------PYEGGVFKLELFLPEDYPMSAPK 78 (161)
Q Consensus 41 n~~~w~~~i~Gp~~t-------------py~gg~f~~~i~fp~~yP~~pP~ 78 (161)
+-.+|+++..|...+ |..-|.++|.+.-++=.|.+-|.
T Consensus 36 ~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP~ 86 (161)
T 2cu9_A 36 SDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQ 86 (161)
T ss_dssp SCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCCGGGSSC
T ss_pred CCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCChhHCCC
Confidence 345999999997766 77789999998877666666555
No 72
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.32 E-value=60 Score=27.12 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=25.6
Q ss_pred hHHHHHHHhhhhhhcchhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCC
Q 031320 3 YVNNYLKSCSDEQLFDNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQS 55 (161)
Q Consensus 3 r~~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~t 55 (161)
.+.+||++.-...+...++-..+...++.|+ .+.||+||
T Consensus 189 ~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGv--------------LLyGPPGT 227 (437)
T 4b4t_I 189 SQIQEIKESVELPLTHPELYEEMGIKPPKGV--------------ILYGAPGT 227 (437)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHTCCCCSEE--------------EEESSTTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHhCCCCCCCCC--------------ceECCCCc
Confidence 3556677666665555555555666666665 68899998
No 73
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=24.79 E-value=86 Score=19.21 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 031320 130 PLSDNIAKHWKADETEAVETAKEWTRLYASD 160 (161)
Q Consensus 130 p~n~~aa~~y~~~~~~f~~~a~~~~~~~a~~ 160 (161)
.++.+|++...++-+...+.+-+-+.+++.+
T Consensus 23 ~lsddaa~~LA~dvEyr~~eI~qeA~kfmrH 53 (70)
T 1taf_B 23 SLSDDAAKELAEDVSIKLKRIVQDAAKFMNH 53 (70)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999888888888754
No 74
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=24.68 E-value=74 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=22.7
Q ss_pred CCCCeEEEEEeCCCCCCC-----CCCeEEEee
Q 031320 57 YEGGVFKLELFLPEDYPM-----SAPKVRFLT 83 (161)
Q Consensus 57 y~gg~f~~~i~fp~~yP~-----~pP~v~f~t 83 (161)
-+.|.|.|+-.+|--||. .||.|.|.-
T Consensus 108 d~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 108 FGTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 357999999999999998 788887664
No 75
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=23.78 E-value=2.1e+02 Score=20.73 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=35.0
Q ss_pred CCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeeccc
Q 031320 39 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 86 (161)
Q Consensus 39 ~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 86 (161)
++...+|.+.+.|+.|.-...-+=++...+.+.||. |.-.+..+-|
T Consensus 29 ~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 29 AEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 345679999999998765656677899999999975 7666665543
No 76
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.19 E-value=48 Score=16.22 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=8.1
Q ss_pred ChhHHHHHHHhhhh
Q 031320 1 MRYVNNYLKSCSDE 14 (161)
Q Consensus 1 ~rr~~~el~~~~~~ 14 (161)
||||.+-=..+.++
T Consensus 2 irrlkqknarlkqe 15 (28)
T 3ra3_B 2 IRRLKQKNARLKQE 15 (28)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHH
Confidence 57777665555555
No 77
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}
Probab=22.95 E-value=2e+02 Score=20.22 Aligned_cols=60 Identities=13% Similarity=0.277 Sum_probs=35.0
Q ss_pred hhHHHHHHHhhhhhhc-----chhhhHHHhhCCCCCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEe
Q 031320 2 RYVNNYLKSCSDEQLF-----DNSLCFVISVNTAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELF 67 (161)
Q Consensus 2 rr~~~el~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~ 67 (161)
++|......+....++ +.++...|+..+...+-|..+..+...+..++. +.|++.++.|.
T Consensus 11 ~~v~~~~~~L~~~~WyhG~IsR~eAe~lL~~~~~GtFLVR~S~s~~g~y~LSvr------~~~~v~H~rI~ 75 (164)
T 2bbu_A 11 QLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVK------TQSGTKNLRIQ 75 (164)
T ss_dssp HHHHHHHHHHHHTSCCCTTSCHHHHHHHHHHSSTTCCEEEECSTTSCCEEEEEC------CTTCCEEEECE
T ss_pred hhhhhhhhhhccCCccCCCCCHHHHHHHhcCCCCCCEEEEECCCCCCCEEEEEE------ECCceEEEEEE
Confidence 4666677777776555 455556776644444556655555555555554 24566666655
No 78
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=22.61 E-value=47 Score=16.24 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=8.9
Q ss_pred hHHHHHHHhhhh
Q 031320 3 YVNNYLKSCSDE 14 (161)
Q Consensus 3 r~~~el~~~~~~ 14 (161)
+|+|||+.+-++
T Consensus 7 ~iAqELRRIGDe 18 (26)
T 2wh6_B 7 WIAQELRRIGDE 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH
Confidence 578888877665
No 79
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=21.74 E-value=2.1e+02 Score=19.97 Aligned_cols=60 Identities=8% Similarity=0.074 Sum_probs=36.4
Q ss_pred hhHHHHHHHhhhhhhc-----chhhhHHHhhCCCCC-eEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeC
Q 031320 2 RYVNNYLKSCSDEQLF-----DNSLCFVISVNTAPG-ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFL 68 (161)
Q Consensus 2 rr~~~el~~~~~~~~~-----~~~~~~~l~~~~~~~-~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~f 68 (161)
++|......+....++ +.++...|+. .+.| +-|..+......+.+.+. +.|++.++.|..
T Consensus 5 ~~i~~~~~~l~~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~~~~~LSv~------~~~~v~H~rI~~ 70 (169)
T 2c9w_A 5 ARLAKALRELGQTGWYWGSMTVNEAKEKLKE-APEGTFLIRDSSHSDYLLTISVK------TSAGPTNLRIEY 70 (169)
T ss_dssp HHHHHHHHHHHHTSCBCTTCCHHHHHHHHTT-SCTTCEEEEECCSTTCSEEEEEE------ETTEEEEEEEEE
T ss_pred HHHHHHHHhcccCCccccCCCHHHHHHHcCC-CCCcEEEEecCCCCCCeEEEEEE------ECCeeEEEEEEE
Confidence 5677777777777554 4555566754 4455 445555555555555665 245677777764
No 80
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=21.42 E-value=1.1e+02 Score=22.44 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=33.7
Q ss_pred eEEEEEeCCCCCCCCCCeEEEeeccccccccCCCceEeccCCCCCCcccCHHHHHHHH
Q 031320 61 VFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSI 118 (161)
Q Consensus 61 ~f~~~i~fp~~yP~~pP~v~f~t~i~HPnV~~~G~ic~~~l~~~W~p~~~i~~il~~l 118 (161)
.-.+.|.+.+..|...|.++|.-+- ..|.+-+ -+++--...|.+..++.+=|..|
T Consensus 125 ~vsl~i~vdP~~P~~lPe~~FlG~~--~~v~~lr-~~~~~nl~~Wd~~~~i~~NL~~i 179 (186)
T 3zqs_A 125 NVSINIEVDPRHPTMLPECFFLGAD--HVVKPLG-IKLSRNIHLWDPENSVLQNLKDV 179 (186)
T ss_dssp TEEEEEECCTTSTTSCCEEEEEECH--HHHHHHH-HHHHHHGGGCCTTSCHHHHHHHH
T ss_pred CcEEEEEECCCCCCcCCceEEECCh--HHHHHHH-HHHhhhHhhcCCCCCHHHHHHHH
Confidence 3478899999999999999999762 1111000 01110014799998866555443
No 81
>4fmh_A VP1; viral capsid protein, jelly roll, encapsidation, receptor BI sialylated oligosaccharides, viral protein; HET: SIA GAL; 1.85A {Merkel cell polyomavirus} PDB: 4fmg_A* 4fmi_A* 4fmj_A*
Probab=21.12 E-value=1.1e+02 Score=23.95 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=37.1
Q ss_pred CCeEEEeCCCCcceEEEEEECCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeeccccccccCCCc--eEe
Q 031320 31 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR--ICL 98 (161)
Q Consensus 31 ~~~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnV~~~G~--ic~ 98 (161)
+..++..+.+..+-..+-. |.-+-=|+..|..++.=... .||.+.|....--+..|+||. +|.
T Consensus 183 p~~Ka~ldkdg~yPVE~W~--PDPsrNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 247 (289)
T 4fmh_A 183 PQAKAKLDKDGNYPIEVWC--PDPSKNENSRYYGSIQTGSQ---TPTVLQFSNTLTTVLLDENGVGPLCK 247 (289)
T ss_dssp TTCEEEECSTTCSBTTTEE--ECTTSCTTEEEEEEEECSSS---CCCEEEEETTCCEECCCTTSCCCBCG
T ss_pred chhheeeccCCccceEEEC--CCCCcCcCceeeeEecCCCC---CCCeEEecCceeEEEEcCCCccccee
Confidence 4455555554333221112 33344556666666555443 579999998888888898854 774
Done!