Query 031322
Match_columns 161
No_of_seqs 112 out of 127
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 19:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1boo_A Protein (N-4 cytosine-s 91.6 0.11 3.7E-06 43.4 3.1 38 113-153 9-46 (323)
2 2zig_A TTHA0409, putative modi 91.1 0.11 3.8E-06 42.5 2.6 32 118-152 21-52 (297)
3 3lpm_A Putative methyltransfer 90.6 0.18 6.2E-06 39.7 3.4 35 116-153 98-132 (259)
4 2oyr_A UPF0341 protein YHIQ; a 89.9 0.18 6.2E-06 41.4 2.9 32 118-153 146-177 (258)
5 2h00_A Methyltransferase 10 do 88.5 0.32 1.1E-05 37.7 3.3 37 116-152 115-152 (254)
6 2oo3_A Protein involved in cat 87.7 0.25 8.6E-06 41.9 2.4 35 117-153 137-172 (283)
7 3p9n_A Possible methyltransfer 87.3 0.24 8.3E-06 36.7 1.8 33 117-152 93-125 (189)
8 3c0k_A UPF0064 protein YCCW; P 86.3 0.13 4.4E-06 43.6 -0.2 38 117-155 271-308 (396)
9 1eg2_A Modification methylase 86.3 0.3 1E-05 41.1 2.0 30 121-153 41-71 (319)
10 2b78_A Hypothetical protein SM 85.3 0.19 6.4E-06 42.9 0.3 34 118-152 264-297 (385)
11 2ift_A Putative methylase HI07 85.2 0.48 1.7E-05 35.9 2.6 32 117-151 104-136 (201)
12 2r6z_A UPF0341 protein in RSP 85.2 0.16 5.6E-06 41.2 -0.1 36 117-153 139-174 (258)
13 1ne2_A Hypothetical protein TA 84.8 0.51 1.7E-05 35.1 2.5 28 118-153 96-123 (200)
14 3ll7_A Putative methyltransfer 84.6 0.12 4E-06 45.6 -1.3 35 117-154 143-177 (410)
15 2as0_A Hypothetical protein PH 84.2 0.2 6.7E-06 42.4 -0.1 38 117-155 267-304 (396)
16 2fhp_A Methylase, putative; al 83.1 0.15 5.3E-06 37.0 -1.0 35 116-151 93-127 (187)
17 3bt7_A TRNA (uracil-5-)-methyl 82.6 0.47 1.6E-05 39.9 1.7 35 117-151 261-306 (369)
18 3tma_A Methyltransferase; thum 82.0 1 3.4E-05 37.3 3.4 32 118-154 255-286 (354)
19 2esr_A Methyltransferase; stru 81.6 0.42 1.4E-05 34.7 0.9 31 116-150 80-110 (177)
20 3evz_A Methyltransferase; NYSG 81.2 0.82 2.8E-05 34.6 2.5 32 118-153 105-136 (230)
21 1wxx_A TT1595, hypothetical pr 81.2 0.37 1.3E-05 40.7 0.5 35 119-154 259-293 (382)
22 1wy7_A Hypothetical protein PH 80.6 1.1 3.7E-05 33.3 2.9 29 118-154 98-126 (207)
23 1uwv_A 23S rRNA (uracil-5-)-me 79.1 0.8 2.7E-05 39.5 2.0 34 118-152 335-368 (433)
24 3tm4_A TRNA (guanine N2-)-meth 79.1 0.89 3.1E-05 38.3 2.2 33 117-154 268-300 (373)
25 3gdh_A Trimethylguanosine synt 79.1 0.84 2.9E-05 34.9 1.9 34 116-155 126-159 (241)
26 2ozv_A Hypothetical protein AT 78.8 0.89 3.1E-05 36.1 2.0 33 118-153 91-128 (260)
27 3k0b_A Predicted N6-adenine-sp 78.8 1.6 5.5E-05 37.5 3.8 33 115-153 288-320 (393)
28 2fpo_A Methylase YHHF; structu 77.9 1.1 3.8E-05 33.9 2.3 31 117-151 103-133 (202)
29 2igt_A SAM dependent methyltra 77.6 0.38 1.3E-05 40.3 -0.5 33 119-152 205-237 (332)
30 3ldg_A Putative uncharacterize 77.0 1.6 5.6E-05 37.5 3.3 32 116-153 282-313 (384)
31 3ldu_A Putative methylase; str 76.8 1.5 5.3E-05 37.4 3.1 30 118-153 285-314 (385)
32 2yx1_A Hypothetical protein MJ 76.7 1.2 4E-05 37.0 2.3 28 116-151 242-269 (336)
33 2qm3_A Predicted methyltransfe 76.5 1.6 5.5E-05 36.6 3.0 31 118-151 222-252 (373)
34 2ih2_A Modification methylase 76.2 1.3 4.6E-05 36.7 2.5 33 117-155 81-113 (421)
35 1ws6_A Methyltransferase; stru 76.2 0.62 2.1E-05 33.1 0.3 33 118-151 89-121 (171)
36 3a27_A TYW2, uncharacterized p 75.8 1.3 4.6E-05 35.4 2.3 27 118-150 170-196 (272)
37 2frn_A Hypothetical protein PH 74.3 1.6 5.4E-05 35.1 2.3 30 116-151 174-203 (278)
38 3v97_A Ribosomal RNA large sub 74.0 1.2 4.1E-05 41.3 1.7 35 117-155 590-624 (703)
39 3eey_A Putative rRNA methylase 73.8 1.2 4E-05 32.8 1.4 31 116-150 73-103 (197)
40 4dmg_A Putative uncharacterize 73.8 1.8 6.1E-05 37.3 2.7 32 120-155 264-295 (393)
41 1g8a_A Fibrillarin-like PRE-rR 68.3 3.5 0.00012 31.1 2.9 35 117-153 122-156 (227)
42 4dzr_A Protein-(glutamine-N5) 66.9 2.9 9.8E-05 30.5 2.2 33 118-153 80-114 (215)
43 3duw_A OMT, O-methyltransferas 66.3 1.1 3.8E-05 33.7 -0.2 38 115-152 108-145 (223)
44 2jjq_A Uncharacterized RNA met 66.0 2.6 8.9E-05 36.6 2.1 26 119-151 339-364 (425)
45 3q87_B N6 adenine specific DNA 64.1 3.8 0.00013 30.0 2.4 32 116-153 60-91 (170)
46 2b3t_A Protein methyltransfera 63.1 4.2 0.00015 32.0 2.6 30 118-153 160-189 (276)
47 1ixk_A Methyltransferase; open 62.7 4.4 0.00015 33.2 2.8 30 118-152 170-199 (315)
48 2dul_A N(2),N(2)-dimethylguano 62.0 2.7 9.3E-05 36.0 1.4 28 119-150 114-141 (378)
49 1m6y_A S-adenosyl-methyltransf 61.3 1.8 6.3E-05 36.0 0.2 35 117-151 75-109 (301)
50 1sqg_A SUN protein, FMU protei 61.1 3.3 0.00011 35.4 1.8 34 119-155 297-330 (429)
51 2yxl_A PH0851 protein, 450AA l 60.2 5.9 0.0002 34.2 3.2 35 118-155 311-345 (450)
52 2b9e_A NOL1/NOP2/SUN domain fa 59.7 4.4 0.00015 33.7 2.2 33 118-152 154-186 (309)
53 3axs_A Probable N(2),N(2)-dime 59.6 3.7 0.00013 35.6 1.8 27 119-149 107-134 (392)
54 3tfw_A Putative O-methyltransf 58.1 4.4 0.00015 31.6 1.9 36 115-152 113-148 (248)
55 3ntv_A MW1564 protein; rossman 58.0 4.6 0.00016 31.0 1.9 33 116-152 121-154 (232)
56 3dmg_A Probable ribosomal RNA 57.9 5.3 0.00018 34.0 2.5 29 119-152 282-310 (381)
57 1nv8_A HEMK protein; class I a 57.6 5.3 0.00018 32.3 2.3 32 116-154 172-206 (284)
58 2ipx_A RRNA 2'-O-methyltransfe 57.3 5.7 0.00019 30.2 2.3 35 117-153 126-160 (233)
59 3ajd_A Putative methyltransfer 56.9 1.8 6.2E-05 34.5 -0.6 34 118-152 135-168 (274)
60 3v97_A Ribosomal RNA large sub 56.0 7.4 0.00025 36.0 3.3 32 119-153 285-316 (703)
61 1iy9_A Spermidine synthase; ro 55.9 5.8 0.0002 31.9 2.3 32 117-152 129-160 (275)
62 3dr5_A Putative O-methyltransf 54.8 6.1 0.00021 30.6 2.2 33 117-152 109-141 (221)
63 4dcm_A Ribosomal RNA large sub 54.7 6.4 0.00022 33.4 2.5 28 119-152 277-304 (375)
64 3m6w_A RRNA methylase; rRNA me 50.8 6 0.00021 35.1 1.7 30 119-152 153-182 (464)
65 2avd_A Catechol-O-methyltransf 50.5 3.7 0.00013 30.8 0.3 37 116-152 120-157 (229)
66 2frx_A Hypothetical protein YE 49.2 8.6 0.00029 33.9 2.5 33 118-154 169-201 (479)
67 1dus_A MJ0882; hypothetical pr 49.0 9.6 0.00033 27.0 2.3 28 119-152 104-131 (194)
68 3m4x_A NOL1/NOP2/SUN family pr 48.7 6.8 0.00023 34.6 1.7 31 118-152 157-187 (456)
69 1yzh_A TRNA (guanine-N(7)-)-me 47.3 12 0.0004 28.0 2.7 31 117-150 91-121 (214)
70 1o54_A SAM-dependent O-methylt 46.0 8.9 0.00031 30.0 1.9 31 116-152 163-193 (277)
71 3adn_A Spermidine synthase; am 44.4 12 0.0004 30.7 2.4 31 117-151 138-168 (294)
72 2qfm_A Spermine synthase; sper 44.3 8 0.00027 33.6 1.5 32 118-150 246-277 (364)
73 1o9g_A RRNA methyltransferase; 43.8 8.3 0.00028 29.6 1.4 33 121-153 149-181 (250)
74 1inl_A Spermidine synthase; be 43.7 9.7 0.00033 30.9 1.8 31 117-151 144-174 (296)
75 3mti_A RRNA methylase; SAM-dep 41.9 13 0.00044 26.8 2.1 32 117-152 70-101 (185)
76 3mb5_A SAM-dependent methyltra 41.5 16 0.00056 27.7 2.7 33 115-153 143-175 (255)
77 2f8l_A Hypothetical protein LM 40.7 11 0.00037 30.9 1.6 27 118-150 185-211 (344)
78 3tr6_A O-methyltransferase; ce 40.3 11 0.00037 28.1 1.5 35 116-150 115-150 (225)
79 3k6r_A Putative transferase PH 40.0 14 0.00048 30.4 2.2 28 117-150 175-202 (278)
80 1xj5_A Spermidine synthase 1; 39.4 13 0.00044 31.1 2.0 32 117-151 174-205 (334)
81 2pt6_A Spermidine synthase; tr 39.3 10 0.00035 31.3 1.3 29 117-149 170-198 (321)
82 1mjf_A Spermidine synthase; sp 38.9 10 0.00035 30.4 1.2 30 117-151 134-163 (281)
83 3dxy_A TRNA (guanine-N(7)-)-me 38.2 18 0.00061 27.8 2.5 34 118-154 85-121 (218)
84 3g7u_A Cytosine-specific methy 37.8 10 0.00035 32.4 1.1 37 118-154 46-85 (376)
85 2ar0_A M.ecoki, type I restric 37.2 13 0.00045 33.1 1.8 17 138-154 259-275 (541)
86 2o07_A Spermidine synthase; st 36.0 15 0.00051 30.1 1.8 33 116-152 148-180 (304)
87 1g55_A DNA cytosine methyltran 35.6 5.2 0.00018 33.5 -1.1 34 119-155 49-83 (343)
88 3bwc_A Spermidine synthase; SA 34.4 17 0.00056 29.6 1.8 33 116-151 148-180 (304)
89 2h1r_A Dimethyladenosine trans 34.3 15 0.00052 29.7 1.6 28 117-151 90-117 (299)
90 1uir_A Polyamine aminopropyltr 33.9 15 0.00051 30.0 1.5 32 117-152 132-163 (314)
91 3u81_A Catechol O-methyltransf 33.5 29 0.00098 26.0 2.9 35 117-151 110-145 (221)
92 3lkd_A Type I restriction-modi 32.9 19 0.00064 32.4 2.0 15 138-152 295-309 (542)
93 1yb2_A Hypothetical protein TA 32.8 24 0.0008 27.7 2.4 28 117-150 162-189 (275)
94 1i9g_A Hypothetical protein RV 32.3 26 0.00088 27.0 2.5 29 116-149 152-180 (280)
95 4fzv_A Putative methyltransfer 32.2 16 0.00055 31.2 1.4 15 138-152 221-235 (359)
96 2b25_A Hypothetical protein; s 32.2 18 0.00061 29.3 1.6 34 116-152 166-199 (336)
97 2pwy_A TRNA (adenine-N(1)-)-me 31.8 24 0.00083 26.5 2.3 28 117-149 148-175 (258)
98 3khk_A Type I restriction-modi 31.8 18 0.00062 32.4 1.7 16 138-153 327-342 (544)
99 2yvl_A TRMI protein, hypotheti 31.3 31 0.0011 25.8 2.7 32 115-151 138-169 (248)
100 3dou_A Ribosomal RNA large sub 31.2 9.1 0.00031 28.9 -0.3 33 117-149 62-100 (191)
101 2b2c_A Spermidine synthase; be 30.9 20 0.00067 29.7 1.7 30 116-149 161-190 (314)
102 2c7p_A Modification methylase 29.9 33 0.0011 28.6 2.9 31 123-157 58-88 (327)
103 3gjy_A Spermidine synthase; AP 29.4 18 0.00062 30.5 1.3 32 117-151 139-170 (317)
104 2okc_A Type I restriction enzy 29.1 20 0.00067 30.7 1.5 31 118-154 237-267 (445)
105 2gpy_A O-methyltransferase; st 27.0 19 0.00066 27.1 0.9 33 117-151 105-137 (233)
106 3c3p_A Methyltransferase; NP_9 26.8 24 0.00083 26.1 1.4 32 116-152 107-138 (210)
107 3r3h_A O-methyltransferase, SA 26.4 7.9 0.00027 30.3 -1.4 36 116-151 111-147 (242)
108 3c3y_A Pfomt, O-methyltransfer 25.6 8.6 0.00029 29.8 -1.3 36 116-151 121-158 (237)
109 1ej0_A FTSJ; methyltransferase 25.4 34 0.0012 23.4 1.9 32 117-151 62-99 (180)
110 2i7c_A Spermidine synthase; tr 25.0 24 0.00083 28.2 1.2 31 117-151 132-162 (283)
111 3cgg_A SAM-dependent methyltra 24.6 49 0.0017 23.2 2.7 27 118-149 90-116 (195)
112 3end_A Light-independent proto 24.5 34 0.0012 27.0 2.0 15 138-152 154-169 (307)
113 3ufb_A Type I restriction-modi 24.3 29 0.001 30.9 1.7 15 138-152 300-314 (530)
114 3o4f_A Spermidine synthase; am 23.4 34 0.0012 28.6 1.9 16 137-152 154-169 (294)
115 1fbn_A MJ fibrillarin homologu 22.2 57 0.0019 24.5 2.8 33 117-151 122-154 (230)
116 1sui_A Caffeoyl-COA O-methyltr 22.1 20 0.00068 28.0 0.1 37 116-152 130-168 (247)
117 2qy6_A UPF0209 protein YFCK; s 22.1 35 0.0012 27.5 1.6 29 120-148 153-181 (257)
118 1zx0_A Guanidinoacetate N-meth 21.0 40 0.0014 25.4 1.7 28 117-147 108-135 (236)
119 3cbg_A O-methyltransferase; cy 20.9 15 0.00052 28.1 -0.8 36 116-151 123-159 (232)
120 3s1s_A Restriction endonucleas 20.9 32 0.0011 33.4 1.4 14 138-151 397-410 (878)
121 1ve3_A Hypothetical protein PH 20.2 56 0.0019 23.8 2.3 28 117-149 85-112 (227)
No 1
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=91.56 E-value=0.11 Score=43.39 Aligned_cols=38 Identities=13% Similarity=0.355 Sum_probs=27.8
Q ss_pred eecCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 113 YILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 113 y~iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
++--....++.+|....-..++ +.+||+|++|||+...
T Consensus 9 ~~~~~~~~ii~gD~~~~l~~l~---~~svDlI~tDPPY~~~ 46 (323)
T 1boo_A 9 AYTTSNGSMYIGDSLELLESFP---EESISLVMTSPPFALQ 46 (323)
T ss_dssp SEECSSEEEEESCHHHHGGGSC---SSCEEEEEECCCCSSS
T ss_pred eeecCCceEEeCcHHHHHhhCC---CCCeeEEEECCCCCCC
Confidence 4445566788999877555563 3579999999999764
No 2
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=91.06 E-value=0.11 Score=42.47 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=25.3
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
...++.+|..+.-..++ +.+|||||.|||+.+
T Consensus 21 ~~~i~~gD~~~~l~~l~---~~s~DlIvtdPPY~~ 52 (297)
T 2zig_A 21 VHRLHVGDAREVLASFP---EASVHLVVTSPPYWT 52 (297)
T ss_dssp CEEEEESCHHHHHTTSC---TTCEEEEEECCCCCC
T ss_pred CCEEEECcHHHHHhhCC---CCceeEEEECCCCCC
Confidence 56789999988655553 367999999999965
No 3
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=90.57 E-value=0.18 Score=39.67 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=25.4
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
..+..|+.+|+..+...++ ..+||+||.||||...
T Consensus 98 ~~~v~~~~~D~~~~~~~~~---~~~fD~Ii~npPy~~~ 132 (259)
T 3lpm_A 98 EDQIEIIEYDLKKITDLIP---KERADIVTCNPPYFAT 132 (259)
T ss_dssp TTTEEEECSCGGGGGGTSC---TTCEEEEEECCCC---
T ss_pred cccEEEEECcHHHhhhhhc---cCCccEEEECCCCCCC
Confidence 3456889999988776552 4689999999998654
No 4
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=89.86 E-value=0.18 Score=41.44 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=23.7
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
+.+|+.+|...+-+.++ ..||+|++|||++.+
T Consensus 146 ~i~~~~~D~~~~L~~~~----~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 146 RLQLIHASSLTALTDIT----PRPQVVYLDPMFPHK 177 (258)
T ss_dssp HEEEEESCHHHHSTTCS----SCCSEEEECCCCCCC
T ss_pred CEEEEECCHHHHHHhCc----ccCCEEEEcCCCCCc
Confidence 45788888877643332 259999999999874
No 5
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=88.45 E-value=0.32 Score=37.72 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=24.1
Q ss_pred CCCCccccCCchh-hcccCCCCCCCCccEEEEcCCCCC
Q 031322 116 PRESCFFMSDLGQ-IHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 116 Pp~S~Fl~~di~~-~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
+.+..|+.+|+.+ +...++.....+||+||.|||+..
T Consensus 115 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~ 152 (254)
T 2h00_A 115 SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFA 152 (254)
T ss_dssp TTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred CccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCcc
Confidence 4456888888766 333343211257999999999864
No 6
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=87.74 E-value=0.25 Score=41.86 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=25.8
Q ss_pred CCCccccCCch-hhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 117 RESCFFMSDLG-QIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 117 p~S~Fl~~di~-~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
.+...+..|.. .+..+.+. ..+||||.||||.+-+
T Consensus 137 ~~~~V~~~D~~~~L~~l~~~--~~~fdLVfiDPPYe~k 172 (283)
T 2oo3_A 137 KKVYVNHTDGVSKLNALLPP--PEKRGLIFIDPSYERK 172 (283)
T ss_dssp SCEEEECSCHHHHHHHHCSC--TTSCEEEEECCCCCST
T ss_pred CcEEEEeCcHHHHHHHhcCC--CCCccEEEECCCCCCC
Confidence 56777888854 46666643 4679999999999854
No 7
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=87.31 E-value=0.24 Score=36.70 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
++..|+.+|+..+...++ ..+||+|++|||+..
T Consensus 93 ~~v~~~~~d~~~~~~~~~---~~~fD~i~~~~p~~~ 125 (189)
T 3p9n_A 93 SGATLRRGAVAAVVAAGT---TSPVDLVLADPPYNV 125 (189)
T ss_dssp SCEEEEESCHHHHHHHCC---SSCCSEEEECCCTTS
T ss_pred CceEEEEccHHHHHhhcc---CCCccEEEECCCCCc
Confidence 467899999988754342 467999999999875
No 8
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=86.32 E-value=0.13 Score=43.65 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=26.8
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
.+..|+.+|+...-..+.. ...+||+||+|||...++-
T Consensus 271 ~~v~~~~~D~~~~~~~~~~-~~~~fD~Ii~dpP~~~~~~ 308 (396)
T 3c0k_A 271 SKAEFVRDDVFKLLRTYRD-RGEKFDVIVMDPPKFVENK 308 (396)
T ss_dssp GGEEEEESCHHHHHHHHHH-TTCCEEEEEECCSSTTTCS
T ss_pred cceEEEECCHHHHHHHHHh-cCCCCCEEEECCCCCCCCh
Confidence 3678999999876432211 2467999999999876543
No 9
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=86.25 E-value=0.3 Score=41.08 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=22.0
Q ss_pred cc-cCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 121 FF-MSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 121 Fl-~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
.+ .+|....-..++ +.+||||++|||+...
T Consensus 41 l~i~gD~l~~L~~l~---~~svDlI~tDPPY~~~ 71 (319)
T 1eg2_A 41 VYDVCDCLDTLAKLP---DDSVQLIICDPPYNIM 71 (319)
T ss_dssp EEEECCHHHHHHTSC---TTCEEEEEECCCSBCC
T ss_pred EEECCcHHHHHHhCc---cCCcCEEEECCCCCCC
Confidence 44 788866555564 3579999999999764
No 10
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=85.27 E-value=0.19 Score=42.85 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
+..|+.+|+...-..+.. ...+||+||+|||...
T Consensus 264 ~v~~~~~D~~~~l~~~~~-~~~~fD~Ii~DPP~~~ 297 (385)
T 2b78_A 264 NHQLVVMDVFDYFKYARR-HHLTYDIIIIDPPSFA 297 (385)
T ss_dssp TEEEEESCHHHHHHHHHH-TTCCEEEEEECCCCC-
T ss_pred ceEEEECCHHHHHHHHHH-hCCCccEEEECCCCCC
Confidence 678999999774322211 2457999999999964
No 11
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=85.23 E-value=0.48 Score=35.93 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCccccCCchhhcccCCCCCCCC-ccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCG-FNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~-FdlIvlDPPW~ 151 (161)
++..|+.+|+......+ ...+ ||+|++|||+.
T Consensus 104 ~~v~~~~~d~~~~~~~~---~~~~~fD~I~~~~~~~ 136 (201)
T 2ift_A 104 EQAEVINQSSLDFLKQP---QNQPHFDVVFLDPPFH 136 (201)
T ss_dssp TTEEEECSCHHHHTTSC---CSSCCEEEEEECCCSS
T ss_pred cceEEEECCHHHHHHhh---ccCCCCCEEEECCCCC
Confidence 45688899987764332 1357 99999999964
No 12
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=85.23 E-value=0.16 Score=41.20 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=22.6
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
.+-+|+.+|...+-+.++. ....||+|++||||+.+
T Consensus 139 ~ri~~~~~d~~~~l~~~~~-~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 139 ARINLHFGNAAEQMPALVK-TQGKPDIVYLDPMYPER 174 (258)
T ss_dssp TTEEEEESCHHHHHHHHHH-HHCCCSEEEECCCC---
T ss_pred cCeEEEECCHHHHHHhhhc-cCCCccEEEECCCCCCc
Confidence 3467889998775432311 01469999999999874
No 13
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=84.76 E-value=0.51 Score=35.14 Aligned_cols=28 Identities=18% Similarity=0.532 Sum_probs=20.6
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
+..|+.+|+..+. .+||+||+||||...
T Consensus 96 ~~~~~~~d~~~~~--------~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 96 GVNFMVADVSEIS--------GKYDTWIMNPPFGSV 123 (200)
T ss_dssp TSEEEECCGGGCC--------CCEEEEEECCCC---
T ss_pred CCEEEECcHHHCC--------CCeeEEEECCCchhc
Confidence 6788899987642 479999999998654
No 14
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=84.58 E-value=0.12 Score=45.58 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS 154 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS 154 (161)
.+.+|+.+|+...-+.+ ...+||+|++|||+.+..
T Consensus 143 ~~i~~i~~Da~~~L~~~---~~~~fDvV~lDPPrr~~~ 177 (410)
T 3ll7_A 143 KDVNILTGDFKEYLPLI---KTFHPDYIYVDPARRSGA 177 (410)
T ss_dssp CEEEEEESCGGGSHHHH---HHHCCSEEEECCEEC---
T ss_pred CcEEEEECcHHHhhhhc---cCCCceEEEECCCCcCCC
Confidence 45689999987742212 124699999999999853
No 15
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=84.16 E-value=0.2 Score=42.40 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=26.7
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
.+..|+.+|+......+.. ...+||+||+|||...++.
T Consensus 267 ~~v~~~~~d~~~~~~~~~~-~~~~fD~Vi~dpP~~~~~~ 304 (396)
T 2as0_A 267 DRMKFIVGSAFEEMEKLQK-KGEKFDIVVLDPPAFVQHE 304 (396)
T ss_dssp GGEEEEESCHHHHHHHHHH-TTCCEEEEEECCCCSCSSG
T ss_pred ccceEEECCHHHHHHHHHh-hCCCCCEEEECCCCCCCCH
Confidence 3568999998776433211 2467999999999876543
No 16
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=83.12 E-value=0.15 Score=36.99 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=24.2
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
+++..|+.+|+......++. ...+||+|++|||+.
T Consensus 93 ~~~~~~~~~d~~~~~~~~~~-~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 93 PEKFEVRKMDANRALEQFYE-EKLQFDLVLLDPPYA 127 (187)
T ss_dssp GGGEEEEESCHHHHHHHHHH-TTCCEEEEEECCCGG
T ss_pred CcceEEEECcHHHHHHHHHh-cCCCCCEEEECCCCC
Confidence 34568889998775432221 246799999999964
No 17
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=82.62 E-value=0.47 Score=39.90 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=24.1
Q ss_pred CCCccccCCchhhcccCCCCC-----------CCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADS-----------DCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~-----------~~~FdlIvlDPPW~ 151 (161)
.+.+|+.+|+.++-..+.... ..+||+||+|||..
T Consensus 261 ~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 261 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 306 (369)
T ss_dssp CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc
Confidence 367899999987643332110 13799999999975
No 18
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=82.05 E-value=1 Score=37.27 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=23.6
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS 154 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS 154 (161)
.-.|..+|+.++... ...||+||.||||-.+.
T Consensus 255 ~i~~~~~D~~~~~~~-----~~~~D~Ii~npPyg~r~ 286 (354)
T 3tma_A 255 WIRFLRADARHLPRF-----FPEVDRILANPPHGLRL 286 (354)
T ss_dssp TCEEEECCGGGGGGT-----CCCCSEEEECCCSCC--
T ss_pred ceEEEeCChhhCccc-----cCCCCEEEECCCCcCcc
Confidence 678999999887532 24599999999997643
No 19
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=81.64 E-value=0.42 Score=34.72 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
+++..|+.+|+...-..+ ..+||+|++|||+
T Consensus 80 ~~~~~~~~~d~~~~~~~~----~~~fD~i~~~~~~ 110 (177)
T 2esr_A 80 ENRFTLLKMEAERAIDCL----TGRFDLVFLDPPY 110 (177)
T ss_dssp GGGEEEECSCHHHHHHHB----CSCEEEEEECCSS
T ss_pred CCceEEEECcHHHhHHhh----cCCCCEEEECCCC
Confidence 345678899988743333 2459999999997
No 20
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=81.25 E-value=0.82 Score=34.55 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=22.0
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
...|+.+|+..+..+. ..+||+|+.||||-..
T Consensus 105 ~v~~~~~d~~~~~~~~----~~~fD~I~~npp~~~~ 136 (230)
T 3evz_A 105 NVRLVKSNGGIIKGVV----EGTFDVIFSAPPYYDK 136 (230)
T ss_dssp CCEEEECSSCSSTTTC----CSCEEEEEECCCCC--
T ss_pred CcEEEeCCchhhhhcc----cCceeEEEECCCCcCC
Confidence 5678888875443322 3679999999998543
No 21
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=81.19 E-value=0.37 Score=40.66 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=25.1
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS 154 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS 154 (161)
..|+.+|+...-..+.. ...+||+||+|||...++
T Consensus 259 ~~~~~~d~~~~~~~~~~-~~~~fD~Ii~dpP~~~~~ 293 (382)
T 1wxx_A 259 VRVLEANAFDLLRRLEK-EGERFDLVVLDPPAFAKG 293 (382)
T ss_dssp EEEEESCHHHHHHHHHH-TTCCEEEEEECCCCSCCS
T ss_pred ceEEECCHHHHHHHHHh-cCCCeeEEEECCCCCCCC
Confidence 68999998876432211 246799999999986654
No 22
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=80.56 E-value=1.1 Score=33.33 Aligned_cols=29 Identities=14% Similarity=0.566 Sum_probs=22.1
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS 154 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS 154 (161)
+..|+.+|+..+. .+||+|++|||+...+
T Consensus 98 ~~~~~~~d~~~~~--------~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 98 KFKVFIGDVSEFN--------SRVDIVIMNPPFGSQR 126 (207)
T ss_dssp SEEEEESCGGGCC--------CCCSEEEECCCCSSSS
T ss_pred CEEEEECchHHcC--------CCCCEEEEcCCCcccc
Confidence 4678888887642 3799999999986543
No 23
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=79.14 E-value=0.8 Score=39.47 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=23.3
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
+..|+.+|+...-..++. ...+||+||+|||...
T Consensus 335 ~v~f~~~d~~~~l~~~~~-~~~~fD~Vv~dPPr~g 368 (433)
T 1uwv_A 335 NVTFYHENLEEDVTKQPW-AKNGFDKVLLDPARAG 368 (433)
T ss_dssp SEEEEECCTTSCCSSSGG-GTTCCSEEEECCCTTC
T ss_pred ceEEEECCHHHHhhhhhh-hcCCCCEEEECCCCcc
Confidence 678999998763322111 2357999999999753
No 24
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=79.06 E-value=0.89 Score=38.31 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=23.6
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS 154 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS 154 (161)
..-.|..+|+..+. + ...+||+||.||||-.+.
T Consensus 268 ~~i~~~~~D~~~~~--~---~~~~fD~Ii~npPyg~r~ 300 (373)
T 3tm4_A 268 DKIKFIQGDATQLS--Q---YVDSVDFAISNLPYGLKI 300 (373)
T ss_dssp GGCEEEECCGGGGG--G---TCSCEEEEEEECCCC---
T ss_pred CceEEEECChhhCC--c---ccCCcCEEEECCCCCccc
Confidence 45688999998865 2 236799999999997643
No 25
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=79.06 E-value=0.84 Score=34.86 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=25.8
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
+++..|+.+|+..+. ...+||+|++||||..-..
T Consensus 126 ~~~~~~~~~d~~~~~------~~~~~D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 126 ADKIEFICGDFLLLA------SFLKADVVFLSPPWGGPDY 159 (241)
T ss_dssp GGGEEEEESCHHHHG------GGCCCSEEEECCCCSSGGG
T ss_pred CcCeEEEECChHHhc------ccCCCCEEEECCCcCCcch
Confidence 346788999998765 1357999999999976443
No 26
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=78.79 E-value=0.89 Score=36.07 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=21.5
Q ss_pred CCccccCCchhhcc-----cCCCCCCCCccEEEEcCCCCCc
Q 031322 118 ESCFFMSDLGQIHN-----LIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 118 ~S~Fl~~di~~~~~-----l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
+-.|+.+|+..... .+ ...+||+||.+|||...
T Consensus 91 ~v~~~~~D~~~~~~~~~~~~~---~~~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 91 RIEVLEADVTLRAKARVEAGL---PDEHFHHVIMNPPYNDA 128 (260)
T ss_dssp GEEEEECCTTCCHHHHHHTTC---CTTCEEEEEECCCC---
T ss_pred eEEEEeCCHHHHhhhhhhhcc---CCCCcCEEEECCCCcCC
Confidence 35678888876621 23 24679999999999754
No 27
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=78.77 E-value=1.6 Score=37.52 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=24.5
Q ss_pred cCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 115 LPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 115 iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
+.....|..+|+.++. ...+||+||.||||-.|
T Consensus 288 l~~~I~~~~~D~~~~~------~~~~fD~Iv~NPPYg~r 320 (393)
T 3k0b_A 288 LGDLITFRQLQVADFQ------TEDEYGVVVANPPYGER 320 (393)
T ss_dssp CTTCSEEEECCGGGCC------CCCCSCEEEECCCCCCS
T ss_pred CCCceEEEECChHhCC------CCCCCCEEEECCCCccc
Confidence 3445788999987754 12479999999999654
No 28
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=77.93 E-value=1.1 Score=33.91 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=22.7
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++..|+.+|+...... ...+||+|++|||+.
T Consensus 103 ~~v~~~~~D~~~~~~~----~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 103 GNARVVNSNAMSFLAQ----KGTPHNIVFVDPPFR 133 (202)
T ss_dssp CSEEEECSCHHHHHSS----CCCCEEEEEECCSSS
T ss_pred CcEEEEECCHHHHHhh----cCCCCCEEEECCCCC
Confidence 4578899998774322 245799999999954
No 29
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=77.61 E-value=0.38 Score=40.32 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=22.7
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
..|+.+|+......+.. ...+||+||+|||-..
T Consensus 205 v~~i~~D~~~~l~~~~~-~~~~fD~Ii~dPP~~~ 237 (332)
T 2igt_A 205 IRWICEDAMKFIQREER-RGSTYDIILTDPPKFG 237 (332)
T ss_dssp EEEECSCHHHHHHHHHH-HTCCBSEEEECCCSEE
T ss_pred eEEEECcHHHHHHHHHh-cCCCceEEEECCcccc
Confidence 67899998775422210 1357999999999543
No 30
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=77.00 E-value=1.6 Score=37.50 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=24.0
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
.....|..+|+.++.. ..+||+||.||||--|
T Consensus 282 ~~~I~~~~~D~~~l~~------~~~fD~Iv~NPPYG~r 313 (384)
T 3ldg_A 282 EDVVKLKQMRLQDFKT------NKINGVLISNPPYGER 313 (384)
T ss_dssp TTTEEEEECCGGGCCC------CCCSCEEEECCCCTTT
T ss_pred CCceEEEECChHHCCc------cCCcCEEEECCchhhc
Confidence 3456788999887541 2479999999999754
No 31
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=76.81 E-value=1.5 Score=37.40 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=22.3
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
.-.|..+|+.++. ...+||+||.||||-.|
T Consensus 285 ~i~~~~~D~~~l~------~~~~~D~Iv~NPPyg~r 314 (385)
T 3ldu_A 285 YIEFNVGDATQFK------SEDEFGFIITNPPYGER 314 (385)
T ss_dssp GEEEEECCGGGCC------CSCBSCEEEECCCCCCS
T ss_pred ceEEEECChhhcC------cCCCCcEEEECCCCcCc
Confidence 4568888887653 13479999999999654
No 32
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=76.69 E-value=1.2 Score=37.01 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=21.5
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
..+..|+.+|+.... .+||+|++|||..
T Consensus 242 ~~~v~~~~~D~~~~~--------~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 242 EHKIIPILSDVREVD--------VKGNRVIMNLPKF 269 (336)
T ss_dssp TTTEEEEESCGGGCC--------CCEEEEEECCTTT
T ss_pred CCcEEEEECChHHhc--------CCCcEEEECCcHh
Confidence 446788888886543 5799999999864
No 33
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=76.50 E-value=1.6 Score=36.58 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
+-.|+.+|+.. .++.....+||+||+|||+.
T Consensus 222 ~v~~~~~D~~~---~l~~~~~~~fD~Vi~~~p~~ 252 (373)
T 2qm3_A 222 DIEIFTFDLRK---PLPDYALHKFDTFITDPPET 252 (373)
T ss_dssp CEEEECCCTTS---CCCTTTSSCBSEEEECCCSS
T ss_pred CEEEEEChhhh---hchhhccCCccEEEECCCCc
Confidence 56788888866 12221235799999999974
No 34
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=76.18 E-value=1.3 Score=36.67 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
++..++.+|+.... ...+||+||.+|||-....
T Consensus 81 ~~~~~~~~D~~~~~------~~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 81 PWAEGILADFLLWE------PGEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp TTEEEEESCGGGCC------CSSCEEEEEECCCCCCBSC
T ss_pred CCCcEEeCChhhcC------ccCCCCEEEECcCccCccc
Confidence 35567788876542 2368999999999976543
No 35
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=76.17 E-value=0.62 Score=33.08 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=23.4
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
+..|+.+|+.+....++. ...+||+|++||||.
T Consensus 89 ~~~~~~~d~~~~~~~~~~-~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 89 GARVVALPVEVFLPEAKA-QGERFTVAFMAPPYA 121 (171)
T ss_dssp CCEEECSCHHHHHHHHHH-TTCCEEEEEECCCTT
T ss_pred ceEEEeccHHHHHHhhhc-cCCceEEEEECCCCc
Confidence 568889998874332221 234799999999985
No 36
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=75.80 E-value=1.3 Score=35.44 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=21.3
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
+..|+.+|+... .. ..+||+||+|||-
T Consensus 170 ~~~~~~~d~~~~-~~-----~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 170 NVIPILADNRDV-EL-----KDVADRVIMGYVH 196 (272)
T ss_dssp SEEEEESCGGGC-CC-----TTCEEEEEECCCS
T ss_pred CEEEEECChHHc-Cc-----cCCceEEEECCcc
Confidence 456899999876 22 4679999999995
No 37
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=74.31 E-value=1.6 Score=35.05 Aligned_cols=30 Identities=7% Similarity=-0.055 Sum_probs=23.0
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
.....|+.+|+..+.. ..+||+|++|||..
T Consensus 174 ~~~v~~~~~D~~~~~~------~~~fD~Vi~~~p~~ 203 (278)
T 2frn_A 174 EDRMSAYNMDNRDFPG------ENIADRILMGYVVR 203 (278)
T ss_dssp TTTEEEECSCTTTCCC------CSCEEEEEECCCSS
T ss_pred CceEEEEECCHHHhcc------cCCccEEEECCchh
Confidence 4557799999876542 46799999999954
No 38
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=74.02 E-value=1.2 Score=41.30 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
.+..|+.+|+...-.. ...+||+||+|||..-+|.
T Consensus 590 ~~v~~i~~D~~~~l~~----~~~~fD~Ii~DPP~f~~~~ 624 (703)
T 3v97_A 590 RAHRLIQADCLAWLRE----ANEQFDLIFIDPPTFSNSK 624 (703)
T ss_dssp TTEEEEESCHHHHHHH----CCCCEEEEEECCCSBC---
T ss_pred cceEEEecCHHHHHHh----cCCCccEEEECCccccCCc
Confidence 4678999999874322 2367999999999865543
No 39
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=73.77 E-value=1.2 Score=32.83 Aligned_cols=31 Identities=10% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
.++..|+.+|+..+.... ..+||+|+.|||+
T Consensus 73 ~~~v~~~~~d~~~~~~~~----~~~fD~v~~~~~~ 103 (197)
T 3eey_A 73 IDRVTLIKDGHQNMDKYI----DCPVKAVMFNLGY 103 (197)
T ss_dssp GGGEEEECSCGGGGGGTC----CSCEEEEEEEESB
T ss_pred CCCeEEEECCHHHHhhhc----cCCceEEEEcCCc
Confidence 345678999987776543 2679999999987
No 40
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=73.76 E-value=1.8 Score=37.31 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=22.2
Q ss_pred ccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322 120 CFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 120 ~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
.|..+|+...-..+ ... ||+||+|||...+|.
T Consensus 264 ~~~~~D~~~~l~~~---~~~-fD~Ii~dpP~f~~~~ 295 (393)
T 4dmg_A 264 DIRHGEALPTLRGL---EGP-FHHVLLDPPTLVKRP 295 (393)
T ss_dssp EEEESCHHHHHHTC---CCC-EEEEEECCCCCCSSG
T ss_pred cEEEccHHHHHHHh---cCC-CCEEEECCCcCCCCH
Confidence 46688887754333 123 999999999866553
No 41
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=68.25 E-value=3.5 Score=31.10 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=24.4
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
++..|+.+|+.....+.+ ...+||+|++|+|++..
T Consensus 122 ~~v~~~~~d~~~~~~~~~--~~~~~D~v~~~~~~~~~ 156 (227)
T 1g8a_A 122 RNIVPILGDATKPEEYRA--LVPKVDVIFEDVAQPTQ 156 (227)
T ss_dssp TTEEEEECCTTCGGGGTT--TCCCEEEEEECCCSTTH
T ss_pred CCCEEEEccCCCcchhhc--ccCCceEEEECCCCHhH
Confidence 567888899876532221 13479999999997654
No 42
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=66.91 E-value=2.9 Score=30.47 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=20.0
Q ss_pred CCccccCCchhhcccCCC--CCCCCccEEEEcCCCCCc
Q 031322 118 ESCFFMSDLGQIHNLIPA--DSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~--~~~~~FdlIvlDPPW~Nk 153 (161)
+..|+.+|+... ++. ....+||+|+.||||-..
T Consensus 80 ~~~~~~~d~~~~---~~~~~~~~~~fD~i~~npp~~~~ 114 (215)
T 4dzr_A 80 VVDWAAADGIEW---LIERAERGRPWHAIVSNPPYIPT 114 (215)
T ss_dssp ---CCHHHHHHH---HHHHHHTTCCBSEEEECCCCCC-
T ss_pred ceEEEEcchHhh---hhhhhhccCcccEEEECCCCCCC
Confidence 567778887662 211 123679999999999653
No 43
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=66.29 E-value=1.1 Score=33.74 Aligned_cols=38 Identities=18% Similarity=0.062 Sum_probs=24.8
Q ss_pred cCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 115 LPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 115 iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
++.+-.|+.+|+...-..++.....+||+|++|+++++
T Consensus 108 ~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~ 145 (223)
T 3duw_A 108 LNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQN 145 (223)
T ss_dssp CTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGGG
T ss_pred CCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHH
Confidence 34557888899876543332222256999999998653
No 44
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=65.97 E-value=2.6 Score=36.57 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=19.7
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
..|+.+|+..+ ++ .+||+||+|||..
T Consensus 339 v~~~~~d~~~~---~~----~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 339 AEFEVASDREV---SV----KGFDTVIVDPPRA 364 (425)
T ss_dssp EEEEECCTTTC---CC----TTCSEEEECCCTT
T ss_pred EEEEECChHHc---Cc----cCCCEEEEcCCcc
Confidence 67888888764 21 1799999999964
No 45
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=64.09 E-value=3.8 Score=30.04 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
.++..|+.+|+.. .++ ..+||+|+.+||+-..
T Consensus 60 ~~~~~~~~~d~~~---~~~---~~~fD~i~~n~~~~~~ 91 (170)
T 3q87_B 60 HRGGNLVRADLLC---SIN---QESVDVVVFNPPYVPD 91 (170)
T ss_dssp CSSSCEEECSTTT---TBC---GGGCSEEEECCCCBTT
T ss_pred ccCCeEEECChhh---hcc---cCCCCEEEECCCCccC
Confidence 4567888999865 232 3679999999998753
No 46
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=63.13 E-value=4.2 Score=31.98 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=22.1
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
+..|+.+|+... ++ ..+||+||.+||+-..
T Consensus 160 ~v~~~~~d~~~~---~~---~~~fD~Iv~npPy~~~ 189 (276)
T 2b3t_A 160 NIHILQSDWFSA---LA---GQQFAMIVSNPPYIDE 189 (276)
T ss_dssp SEEEECCSTTGG---GT---TCCEEEEEECCCCBCT
T ss_pred ceEEEEcchhhh---cc---cCCccEEEECCCCCCc
Confidence 567888887653 32 3579999999998654
No 47
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=62.71 E-value=4.4 Score=33.18 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
+..|+.+|+..+.. . ..+||+|++|||..+
T Consensus 170 ~v~~~~~D~~~~~~-~----~~~fD~Il~d~Pcsg 199 (315)
T 1ixk_A 170 NVILFHSSSLHIGE-L----NVEFDKILLDAPCTG 199 (315)
T ss_dssp SEEEESSCGGGGGG-G----CCCEEEEEEECCTTS
T ss_pred eEEEEECChhhccc-c----cccCCEEEEeCCCCC
Confidence 46788888877653 1 356999999999654
No 48
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=62.04 E-value=2.7 Score=35.97 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=20.5
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
..++.+|+..+-... ..+||+|++|||-
T Consensus 114 i~v~~~Da~~~~~~~----~~~fD~I~lDP~~ 141 (378)
T 2dul_A 114 IVINHDDANRLMAER----HRYFHFIDLDPFG 141 (378)
T ss_dssp EEEEESCHHHHHHHS----TTCEEEEEECCSS
T ss_pred eEEEcCcHHHHHHhc----cCCCCEEEeCCCC
Confidence 568888887764322 2469999999983
No 49
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=61.34 E-value=1.8 Score=36.01 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=24.7
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
.+-+|+.+|+..+...+......+||.||+|||+.
T Consensus 75 ~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 75 DRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS 109 (301)
T ss_dssp TTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred CcEEEEECCHHHHHHHHHhcCCCCCCEEEEcCccc
Confidence 35678899988876444221125799999999974
No 50
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=61.14 E-value=3.3 Score=35.36 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=23.0
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
..++.+|...+...++ ..+||+|++|||...-.+
T Consensus 297 ~~~~~~D~~~~~~~~~---~~~fD~Vl~D~Pcsg~g~ 330 (429)
T 1sqg_A 297 ATVKQGDGRYPSQWCG---EQQFDRILLDAPCSATGV 330 (429)
T ss_dssp CEEEECCTTCTHHHHT---TCCEEEEEEECCCCCGGG
T ss_pred eEEEeCchhhchhhcc---cCCCCEEEEeCCCCcccc
Confidence 4677777766543332 357999999999865433
No 51
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=60.15 E-value=5.9 Score=34.18 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=23.1
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
...|+.+|+..+...++ ..+||+|++|||...-.+
T Consensus 311 ~v~~~~~D~~~~~~~~~---~~~fD~Vl~D~Pcsg~g~ 345 (450)
T 2yxl_A 311 IVKPLVKDARKAPEIIG---EEVADKVLLDAPCTSSGT 345 (450)
T ss_dssp SEEEECSCTTCCSSSSC---SSCEEEEEEECCCCCGGG
T ss_pred cEEEEEcChhhcchhhc---cCCCCEEEEcCCCCCCee
Confidence 45677777765543231 256999999999865443
No 52
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=59.73 E-value=4.4 Score=33.66 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=22.0
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
...++.+|...+....+ ...+||.|++|||-..
T Consensus 154 ~v~~~~~D~~~~~~~~~--~~~~fD~Vl~D~PcSg 186 (309)
T 2b9e_A 154 CCELAEEDFLAVSPSDP--RYHEVHYILLDPSCSG 186 (309)
T ss_dssp SEEEEECCGGGSCTTCG--GGTTEEEEEECCCCCC
T ss_pred eEEEEeCChHhcCcccc--ccCCCCEEEEcCCcCC
Confidence 45778888776543221 1246999999999744
No 53
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=59.58 E-value=3.7 Score=35.62 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=19.9
Q ss_pred CccccCCchhhcc-cCCCCCCCCccEEEEcCC
Q 031322 119 SCFFMSDLGQIHN-LIPADSDCGFNLIVIDPP 149 (161)
Q Consensus 119 S~Fl~~di~~~~~-l~~~~~~~~FdlIvlDPP 149 (161)
..++.+|+..+-. .+ ..+||+|++||+
T Consensus 107 v~v~~~Da~~~l~~~~----~~~fD~V~lDP~ 134 (392)
T 3axs_A 107 YEIHGMEANFFLRKEW----GFGFDYVDLDPF 134 (392)
T ss_dssp EEEECSCHHHHHHSCC----SSCEEEEEECCS
T ss_pred EEEEeCCHHHHHHHhh----CCCCcEEEECCC
Confidence 5788889877543 33 356999999994
No 54
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=58.05 E-value=4.4 Score=31.60 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=24.9
Q ss_pred cCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 115 LPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 115 iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
++.+-.|+.+|+...-..+ ....+||+|++|.+.++
T Consensus 113 ~~~~v~~~~~d~~~~l~~~--~~~~~fD~V~~d~~~~~ 148 (248)
T 3tfw_A 113 VDQRVTLREGPALQSLESL--GECPAFDLIFIDADKPN 148 (248)
T ss_dssp CTTTEEEEESCHHHHHHTC--CSCCCCSEEEECSCGGG
T ss_pred CCCcEEEEEcCHHHHHHhc--CCCCCeEEEEECCchHH
Confidence 3456788999987754333 12357999999997543
No 55
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=58.01 E-value=4.6 Score=31.03 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=24.3
Q ss_pred CCCCccccCCchhhcc-cCCCCCCCCccEEEEcCCCCC
Q 031322 116 PRESCFFMSDLGQIHN-LIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~-l~~~~~~~~FdlIvlDPPW~N 152 (161)
+++-.|+.+|+...-. .+ ..+||+|++|+++++
T Consensus 121 ~~~v~~~~~d~~~~~~~~~----~~~fD~V~~~~~~~~ 154 (232)
T 3ntv_A 121 ENQVRIIEGNALEQFENVN----DKVYDMIFIDAAKAQ 154 (232)
T ss_dssp TTTEEEEESCGGGCHHHHT----TSCEEEEEEETTSSS
T ss_pred CCcEEEEECCHHHHHHhhc----cCCccEEEEcCcHHH
Confidence 4567889999876533 33 357999999998765
No 56
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=57.85 E-value=5.3 Score=34.05 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=21.7
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
..|+.+|+.... ....+||+||.+||+.-
T Consensus 282 v~~~~~D~~~~~-----~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 282 AQALHSDVDEAL-----TEEARFDIIVTNPPFHV 310 (381)
T ss_dssp CEEEECSTTTTS-----CTTCCEEEEEECCCCCT
T ss_pred eEEEEcchhhcc-----ccCCCeEEEEECCchhh
Confidence 678888876543 12468999999999975
No 57
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=57.57 E-value=5.3 Score=32.28 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=22.4
Q ss_pred CCCCccccCCchhhcccCCCCCCCCc---cEEEEcCCCCCcc
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGF---NLIVIDPPWENGS 154 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~F---dlIvlDPPW~NkS 154 (161)
..+..|+.+|+... ++ .+| |+||.+|||-...
T Consensus 172 ~~~v~~~~~D~~~~---~~----~~f~~~D~IvsnPPyi~~~ 206 (284)
T 1nv8_A 172 SDRFFVRKGEFLEP---FK----EKFASIEMILSNPPYVKSS 206 (284)
T ss_dssp TTSEEEEESSTTGG---GG----GGTTTCCEEEECCCCBCGG
T ss_pred CCceEEEECcchhh---cc----cccCCCCEEEEcCCCCCcc
Confidence 34467888888652 21 368 9999999996543
No 58
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=57.28 E-value=5.7 Score=30.19 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=23.8
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
++..|+.+|+.....+ +. ...+||+|++|+|.+..
T Consensus 126 ~~v~~~~~d~~~~~~~-~~-~~~~~D~V~~~~~~~~~ 160 (233)
T 2ipx_A 126 TNIIPVIEDARHPHKY-RM-LIAMVDVIFADVAQPDQ 160 (233)
T ss_dssp TTEEEECSCTTCGGGG-GG-GCCCEEEEEECCCCTTH
T ss_pred CCeEEEEcccCChhhh-cc-cCCcEEEEEEcCCCccH
Confidence 4567888998764321 11 24579999999996643
No 59
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=56.93 E-value=1.8 Score=34.54 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
+..|+.+|+..+...+.. ...+||+|++|||...
T Consensus 135 ~v~~~~~D~~~~~~~~~~-~~~~fD~Vl~d~Pcs~ 168 (274)
T 3ajd_A 135 NTIIINADMRKYKDYLLK-NEIFFDKILLDAPCSG 168 (274)
T ss_dssp SEEEEESCHHHHHHHHHH-TTCCEEEEEEEECCC-
T ss_pred cEEEEeCChHhcchhhhh-ccccCCEEEEcCCCCC
Confidence 567888898876532210 1357999999999865
No 60
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=55.99 E-value=7.4 Score=35.97 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=22.8
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
-.|..+|+..+.... ...+||+||.+|||--|
T Consensus 285 i~~~~~D~~~~~~~~---~~~~~d~Iv~NPPYG~R 316 (703)
T 3v97_A 285 ITFEVKDVAQLTNPL---PKGPYGTVLSNPPYGER 316 (703)
T ss_dssp EEEEECCGGGCCCSC---TTCCCCEEEECCCCCC-
T ss_pred eEEEECChhhCcccc---ccCCCCEEEeCCCcccc
Confidence 478889988765332 12379999999999654
No 61
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=55.89 E-value=5.8 Score=31.90 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=22.6
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
++..++.+|....-. . ...+||+|++|+|.+.
T Consensus 129 ~rv~v~~~D~~~~l~---~-~~~~fD~Ii~d~~~~~ 160 (275)
T 1iy9_A 129 PRVDVQVDDGFMHIA---K-SENQYDVIMVDSTEPV 160 (275)
T ss_dssp TTEEEEESCSHHHHH---T-CCSCEEEEEESCSSCC
T ss_pred CceEEEECcHHHHHh---h-CCCCeeEEEECCCCCC
Confidence 567888888765321 1 2467999999998754
No 62
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=54.77 E-value=6.1 Score=30.59 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
.+-.|+.+|..++-..++ ..+||+|++|++..+
T Consensus 109 ~~i~~~~gda~~~l~~~~---~~~fD~V~~d~~~~~ 141 (221)
T 3dr5_A 109 SRVRFLLSRPLDVMSRLA---NDSYQLVFGQVSPMD 141 (221)
T ss_dssp GGEEEECSCHHHHGGGSC---TTCEEEEEECCCTTT
T ss_pred CcEEEEEcCHHHHHHHhc---CCCcCeEEEcCcHHH
Confidence 567888999877654442 467999999986554
No 63
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=54.75 E-value=6.4 Score=33.35 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=18.3
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
..|+.+|+.. .+ ...+||+|++|||+..
T Consensus 277 v~~~~~D~~~---~~---~~~~fD~Ii~nppfh~ 304 (375)
T 4dcm_A 277 CEFMINNALS---GV---EPFRFNAVLCNPPFHQ 304 (375)
T ss_dssp EEEEECSTTT---TC---CTTCEEEEEECCCC--
T ss_pred EEEEechhhc---cC---CCCCeeEEEECCCccc
Confidence 4566666654 22 2467999999999864
No 64
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=50.81 E-value=6 Score=35.08 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=22.8
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
..++.+|...+...+ ..+||+||+|||-..
T Consensus 153 v~~~~~Da~~l~~~~----~~~FD~Il~D~PcSg 182 (464)
T 3m6w_A 153 LAVTQAPPRALAEAF----GTYFHRVLLDAPCSG 182 (464)
T ss_dssp CEEECSCHHHHHHHH----CSCEEEEEEECCCCC
T ss_pred EEEEECCHHHhhhhc----cccCCEEEECCCcCC
Confidence 678889988776433 356999999999643
No 65
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=50.47 E-value=3.7 Score=30.82 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=23.5
Q ss_pred CCCCccccCCchhhcccCCC-CCCCCccEEEEcCCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPA-DSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~-~~~~~FdlIvlDPPW~N 152 (161)
..+-.|+.+|+...-..++. ....+||+|++||+..+
T Consensus 120 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~ 157 (229)
T 2avd_A 120 EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKEN 157 (229)
T ss_dssp TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTT
T ss_pred CCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHHH
Confidence 45667888888665322211 01157999999998653
No 66
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=49.21 E-value=8.6 Score=33.94 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=23.1
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS 154 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS 154 (161)
...++.+|...+...+ ...||+|++|||-..-.
T Consensus 169 nv~~~~~D~~~~~~~~----~~~fD~Il~D~PcSg~G 201 (479)
T 2frx_A 169 NVALTHFDGRVFGAAV----PEMFDAILLDAPCSGEG 201 (479)
T ss_dssp SEEEECCCSTTHHHHS----TTCEEEEEEECCCCCGG
T ss_pred cEEEEeCCHHHhhhhc----cccCCEEEECCCcCCcc
Confidence 4567888887664322 25699999999975443
No 67
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=49.03 E-value=9.6 Score=27.02 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=20.3
Q ss_pred CccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
..|+.+|+... ++ ..+||+|+++||+..
T Consensus 104 ~~~~~~d~~~~---~~---~~~~D~v~~~~~~~~ 131 (194)
T 1dus_A 104 IRVVHSDLYEN---VK---DRKYNKIITNPPIRA 131 (194)
T ss_dssp EEEEECSTTTT---CT---TSCEEEEEECCCSTT
T ss_pred eEEEECchhcc---cc---cCCceEEEECCCccc
Confidence 56777777552 21 457999999999874
No 68
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=48.66 E-value=6.8 Score=34.62 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=22.3
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
...++.+|...+...+ ...||+||+|||-..
T Consensus 157 nv~v~~~Da~~l~~~~----~~~FD~Il~DaPCSg 187 (456)
T 3m4x_A 157 NAIVTNHAPAELVPHF----SGFFDRIVVDAPCSG 187 (456)
T ss_dssp SEEEECCCHHHHHHHH----TTCEEEEEEECCCCC
T ss_pred ceEEEeCCHHHhhhhc----cccCCEEEECCCCCC
Confidence 3567788887765433 256999999999543
No 69
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=47.32 E-value=12 Score=27.98 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=23.1
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
++-.|+.+|+..+...++ ...||+|++++|-
T Consensus 91 ~~v~~~~~d~~~~~~~~~---~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 91 PNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSD 121 (214)
T ss_dssp SSEEEEECCSSCGGGTSC---TTCCSEEEEESCC
T ss_pred CCEEEEeCCHHHHHhhcC---CCCCCEEEEECCC
Confidence 456788999987665553 3569999999763
No 70
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=46.04 E-value=8.9 Score=30.02 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=21.9
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
++...|+.+|+... ++ ..+||+|++|||-+.
T Consensus 163 ~~~v~~~~~d~~~~---~~---~~~~D~V~~~~~~~~ 193 (277)
T 1o54_A 163 IERVTIKVRDISEG---FD---EKDVDALFLDVPDPW 193 (277)
T ss_dssp GGGEEEECCCGGGC---CS---CCSEEEEEECCSCGG
T ss_pred CCCEEEEECCHHHc---cc---CCccCEEEECCcCHH
Confidence 34567788888654 42 257999999998553
No 71
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=44.40 E-value=12 Score=30.70 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=19.1
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++-+++.+|.... +.. ...+||+||+|++=+
T Consensus 138 ~rv~~~~~D~~~~---l~~-~~~~fDvIi~D~~~p 168 (294)
T 3adn_A 138 PRFKLVIDDGVNF---VNQ-TSQTFDVIISDCTDP 168 (294)
T ss_dssp TTCCEECSCSCC------C-CCCCEEEEEECC---
T ss_pred CceEEEEChHHHH---Hhh-cCCCccEEEECCCCc
Confidence 5678888887543 222 356799999998754
No 72
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=44.33 E-value=8 Score=33.60 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=20.3
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
+-.++.+|....-.-.. ....+||+||+|||=
T Consensus 246 rv~vi~~Da~~~L~~~~-~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 246 CYQVLIEDCIPVLKRYA-KEGREFDYVINDLTA 277 (364)
T ss_dssp TEEEEESCHHHHHHHHH-HHTCCEEEEEEECCS
T ss_pred cEEEEECcHHHHHHhhh-ccCCCceEEEECCCC
Confidence 45677777765432110 024679999999975
No 73
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=43.82 E-value=8.3 Score=29.64 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=19.6
Q ss_pred cccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 121 FFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 121 Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
|..+|+.............+||+||.+|||-..
T Consensus 149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~ 181 (250)
T 1o9g_A 149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGER 181 (250)
T ss_dssp EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred eeecccccccccccccCCCCceEEEeCCCeecc
Confidence 777887552210000013479999999998543
No 74
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=43.66 E-value=9.7 Score=30.89 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=20.1
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++-.++.+|....-.. ...+||+|++|+|-+
T Consensus 144 ~~v~~~~~D~~~~l~~----~~~~fD~Ii~d~~~~ 174 (296)
T 1inl_A 144 PRAEIVIANGAEYVRK----FKNEFDVIIIDSTDP 174 (296)
T ss_dssp TTEEEEESCHHHHGGG----CSSCEEEEEEEC---
T ss_pred CceEEEECcHHHHHhh----CCCCceEEEEcCCCc
Confidence 5678888888664221 246799999999643
No 75
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=41.85 E-value=13 Score=26.77 Aligned_cols=32 Identities=0% Similarity=0.095 Sum_probs=20.3
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
++-+|+.+|...+.... ..+||+|+++++|-.
T Consensus 70 ~~v~~~~~~~~~l~~~~----~~~fD~v~~~~~~~~ 101 (185)
T 3mti_A 70 ENTELILDGHENLDHYV----REPIRAAIFNLGYLP 101 (185)
T ss_dssp CCEEEEESCGGGGGGTC----CSCEEEEEEEEC---
T ss_pred CcEEEEeCcHHHHHhhc----cCCcCEEEEeCCCCC
Confidence 34567777776665443 357999999976643
No 76
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=41.52 E-value=16 Score=27.72 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=23.5
Q ss_pred cCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322 115 LPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG 153 (161)
Q Consensus 115 iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk 153 (161)
++....|+.+|+.+. ++ ..+||+|++|||-+..
T Consensus 143 ~~~~v~~~~~d~~~~---~~---~~~~D~v~~~~~~~~~ 175 (255)
T 3mb5_A 143 FDDRVTIKLKDIYEG---IE---EENVDHVILDLPQPER 175 (255)
T ss_dssp CTTTEEEECSCGGGC---CC---CCSEEEEEECSSCGGG
T ss_pred CCCceEEEECchhhc---cC---CCCcCEEEECCCCHHH
Confidence 345578888998743 43 3569999999996643
No 77
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=40.71 E-value=11 Score=30.91 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=18.4
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
...+..+|.... . ...+||+||.+|||
T Consensus 185 ~~~i~~~D~l~~---~---~~~~fD~Ii~NPPf 211 (344)
T 2f8l_A 185 KMTLLHQDGLAN---L---LVDPVDVVISDLPV 211 (344)
T ss_dssp CCEEEESCTTSC---C---CCCCEEEEEEECCC
T ss_pred CceEEECCCCCc---c---ccCCccEEEECCCC
Confidence 356777775331 1 24679999999996
No 78
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=40.28 E-value=11 Score=28.08 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=22.6
Q ss_pred CCCCccccCCchhhcccCCC-CCCCCccEEEEcCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPA-DSDCGFNLIVIDPPW 150 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~-~~~~~FdlIvlDPPW 150 (161)
..+-.|+.+|+...-..+.. ....+||+|++|++-
T Consensus 115 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~ 150 (225)
T 3tr6_A 115 SDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK 150 (225)
T ss_dssp TTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG
T ss_pred CCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH
Confidence 45577888888655332211 112679999999973
No 79
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=39.99 E-value=14 Score=30.39 Aligned_cols=28 Identities=7% Similarity=-0.058 Sum_probs=19.8
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
....++.+|...+. ...+||.|+||||-
T Consensus 175 ~~v~~~~~D~~~~~------~~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 175 DRMSAYNMDNRDFP------GENIADRILMGYVV 202 (278)
T ss_dssp TTEEEECSCTTTCC------CCSCEEEEEECCCS
T ss_pred CcEEEEeCcHHHhc------cccCCCEEEECCCC
Confidence 34567788875432 24679999999984
No 80
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=39.36 E-value=13 Score=31.10 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=22.2
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++-.|+.+|....-..+ ...+||+||+|++-+
T Consensus 174 ~rv~~~~~D~~~~l~~~---~~~~fDlIi~d~~~p 205 (334)
T 1xj5_A 174 PRVNLVIGDGVAFLKNA---AEGSYDAVIVDSSDP 205 (334)
T ss_dssp TTEEEEESCHHHHHHTS---CTTCEEEEEECCCCT
T ss_pred CcEEEEECCHHHHHHhc---cCCCccEEEECCCCc
Confidence 56778888887653222 135799999999743
No 81
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=39.26 E-value=10 Score=31.33 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=20.3
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPP 149 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPP 149 (161)
++-+|+.+|....-.. ...+||+||+||+
T Consensus 170 ~~v~~~~~D~~~~l~~----~~~~fDvIi~d~~ 198 (321)
T 2pt6_A 170 KRVNVFIEDASKFLEN----VTNTYDVIIVDSS 198 (321)
T ss_dssp TTEEEEESCHHHHHHH----CCSCEEEEEEECC
T ss_pred CcEEEEEccHHHHHhh----cCCCceEEEECCc
Confidence 5677888888664211 1357999999993
No 82
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=38.94 E-value=10 Score=30.37 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=21.0
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++-.++.+|....-.. ..+||+|++|+|-+
T Consensus 134 ~~v~~~~~D~~~~l~~-----~~~fD~Ii~d~~~~ 163 (281)
T 1mjf_A 134 EKAKLTIGDGFEFIKN-----NRGFDVIIADSTDP 163 (281)
T ss_dssp SSEEEEESCHHHHHHH-----CCCEEEEEEECCCC
T ss_pred CcEEEEECchHHHhcc-----cCCeeEEEECCCCC
Confidence 5667888887653211 35799999999843
No 83
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=38.18 E-value=18 Score=27.82 Aligned_cols=34 Identities=21% Similarity=0.533 Sum_probs=25.6
Q ss_pred CCccccCCchhh-cccCCCCCCCCccEEEEc--CCCCCcc
Q 031322 118 ESCFFMSDLGQI-HNLIPADSDCGFNLIVID--PPWENGS 154 (161)
Q Consensus 118 ~S~Fl~~di~~~-~~l~~~~~~~~FdlIvlD--PPW~NkS 154 (161)
+-.|+.+|+..+ ...++ ...||.|++. +||+.+.
T Consensus 85 nv~~~~~Da~~~l~~~~~---~~~~d~v~~~~~~p~~~~~ 121 (218)
T 3dxy_A 85 NLRVMCHDAVEVLHKMIP---DNSLRMVQLFFPDPWHKAR 121 (218)
T ss_dssp SEEEECSCHHHHHHHHSC---TTCEEEEEEESCCCCCSGG
T ss_pred cEEEEECCHHHHHHHHcC---CCChheEEEeCCCCccchh
Confidence 467899998885 43453 4679999998 8998754
No 84
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=37.76 E-value=10 Score=32.38 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCccccCCchhhcc-cCCC--CCCCCccEEEEcCCCCCcc
Q 031322 118 ESCFFMSDLGQIHN-LIPA--DSDCGFNLIVIDPPWENGS 154 (161)
Q Consensus 118 ~S~Fl~~di~~~~~-l~~~--~~~~~FdlIvlDPPW~NkS 154 (161)
++.++.+||..+.. -+.. ....++|+|+.+||=.-=|
T Consensus 46 ~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ~fS 85 (376)
T 3g7u_A 46 RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQGFS 85 (376)
T ss_dssp TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCCTTC
T ss_pred CCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCCCcc
Confidence 56788899987642 1100 0236799999999955444
No 85
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=37.21 E-value=13 Score=33.15 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=13.9
Q ss_pred CCCccEEEEcCCCCCcc
Q 031322 138 DCGFNLIVIDPPWENGS 154 (161)
Q Consensus 138 ~~~FdlIvlDPPW~NkS 154 (161)
..+||+||.+|||-.+.
T Consensus 259 ~~~fD~Vv~NPPf~~~~ 275 (541)
T 2ar0_A 259 LPKAHIVATNPPFGSAA 275 (541)
T ss_dssp SCCEEEEEECCCCTTCS
T ss_pred ccCCeEEEECCCccccc
Confidence 36799999999987554
No 86
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=36.02 E-value=15 Score=30.07 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=21.3
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
.++-.++.+|....-.. ...+||+|++|+|-+.
T Consensus 148 ~~rv~v~~~Da~~~l~~----~~~~fD~Ii~d~~~~~ 180 (304)
T 2o07_A 148 SSKLTLHVGDGFEFMKQ----NQDAFDVIITDSSDPM 180 (304)
T ss_dssp CTTEEEEESCHHHHHHT----CSSCEEEEEEECC---
T ss_pred CCcEEEEECcHHHHHhh----CCCCceEEEECCCCCC
Confidence 35677888888663211 2467999999998653
No 87
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=35.58 E-value=5.2 Score=33.49 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=19.7
Q ss_pred CccccCCchhhcc-cCCCCCCCCccEEEEcCCCCCccc
Q 031322 119 SCFFMSDLGQIHN-LIPADSDCGFNLIVIDPPWENGSA 155 (161)
Q Consensus 119 S~Fl~~di~~~~~-l~~~~~~~~FdlIvlDPPW~NkSv 155 (161)
..++.+||..+.. .++ ...+|+|+.+||..-=|+
T Consensus 49 ~~~~~~Di~~~~~~~~~---~~~~D~l~~gpPCq~fS~ 83 (343)
T 1g55_A 49 TQLLAKTIEGITLEEFD---RLSFDMILMSPPCQPFTR 83 (343)
T ss_dssp SCEECSCGGGCCHHHHH---HHCCSEEEECCC------
T ss_pred cccccCCHHHccHhHcC---cCCcCEEEEcCCCcchhh
Confidence 4577899987652 221 126999999999766555
No 88
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=34.44 E-value=17 Score=29.55 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=22.5
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
.++-.|+.+|+....... ...+||+|++|++-+
T Consensus 148 ~~~v~~~~~D~~~~~~~~---~~~~fDvIi~d~~~~ 180 (304)
T 3bwc_A 148 DPRATVRVGDGLAFVRQT---PDNTYDVVIIDTTDP 180 (304)
T ss_dssp CTTEEEEESCHHHHHHSS---CTTCEEEEEEECC--
T ss_pred CCcEEEEECcHHHHHHhc---cCCceeEEEECCCCc
Confidence 466788889987654221 246799999999754
No 89
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=34.26 E-value=15 Score=29.75 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=17.2
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++-.|+.+|+..+. .++||+||.||||.
T Consensus 90 ~~v~~~~~D~~~~~-------~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 90 NNLEVYEGDAIKTV-------FPKFDVCTANIPYK 117 (299)
T ss_dssp CCEEC----CCSSC-------CCCCSEEEEECCGG
T ss_pred CceEEEECchhhCC-------cccCCEEEEcCCcc
Confidence 35678888876542 13799999999974
No 90
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=33.92 E-value=15 Score=30.00 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
++-.|+.+|....-.. ...+||+|++|++-+.
T Consensus 132 ~~v~~~~~D~~~~l~~----~~~~fD~Ii~d~~~~~ 163 (314)
T 1uir_A 132 PRAVLVIDDARAYLER----TEERYDVVIIDLTDPV 163 (314)
T ss_dssp TTEEEEESCHHHHHHH----CCCCEEEEEEECCCCB
T ss_pred CceEEEEchHHHHHHh----cCCCccEEEECCCCcc
Confidence 5667888998764211 2467999999998765
No 91
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=33.54 E-value=29 Score=26.01 Aligned_cols=35 Identities=3% Similarity=-0.004 Sum_probs=22.4
Q ss_pred CCCccccCCchhhcccCCC-CCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPA-DSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~-~~~~~FdlIvlDPPW~ 151 (161)
.+-+|+.+|....-..+.. ....+||+|++|.+..
T Consensus 110 ~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 110 DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 3457888998765433321 1125799999998543
No 92
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=32.95 E-value=19 Score=32.40 Aligned_cols=15 Identities=20% Similarity=0.729 Sum_probs=13.0
Q ss_pred CCCccEEEEcCCCCC
Q 031322 138 DCGFNLIVIDPPWEN 152 (161)
Q Consensus 138 ~~~FdlIvlDPPW~N 152 (161)
..+||+||..|||-.
T Consensus 295 ~~~fD~IvaNPPf~~ 309 (542)
T 3lkd_A 295 PTNFDGVLMNPPYSA 309 (542)
T ss_dssp CCCBSEEEECCCTTC
T ss_pred cccccEEEecCCcCC
Confidence 478999999999964
No 93
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=32.82 E-value=24 Score=27.66 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=19.9
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW 150 (161)
+...|..+|+.. .++ ..+||+|++|+|=
T Consensus 162 ~~v~~~~~d~~~---~~~---~~~fD~Vi~~~~~ 189 (275)
T 1yb2_A 162 GNVRTSRSDIAD---FIS---DQMYDAVIADIPD 189 (275)
T ss_dssp TTEEEECSCTTT---CCC---SCCEEEEEECCSC
T ss_pred CcEEEEECchhc---cCc---CCCccEEEEcCcC
Confidence 356778888765 332 3579999999873
No 94
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=32.33 E-value=26 Score=26.99 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPP 149 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPP 149 (161)
.+...|..+|+.... + ...+||+|++|+|
T Consensus 152 ~~~v~~~~~d~~~~~--~---~~~~~D~v~~~~~ 180 (280)
T 1i9g_A 152 PDNWRLVVSDLADSE--L---PDGSVDRAVLDML 180 (280)
T ss_dssp CTTEEEECSCGGGCC--C---CTTCEEEEEEESS
T ss_pred CCcEEEEECchHhcC--C---CCCceeEEEECCc
Confidence 345678888887652 3 2457999999987
No 95
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=32.17 E-value=16 Score=31.23 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=12.0
Q ss_pred CCCccEEEEcCCCCC
Q 031322 138 DCGFNLIVIDPPWEN 152 (161)
Q Consensus 138 ~~~FdlIvlDPPW~N 152 (161)
..+||.|++|+|=..
T Consensus 221 ~~~fD~VLlDaPCSg 235 (359)
T 4fzv_A 221 GDTYDRVLVDVPCTT 235 (359)
T ss_dssp TTCEEEEEEECCCCC
T ss_pred cccCCEEEECCccCC
Confidence 467999999999443
No 96
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=32.17 E-value=18 Score=29.25 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=20.3
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
+..-.|+.+|+......++ ...||+|++|+|=+.
T Consensus 166 ~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~~~ 199 (336)
T 2b25_A 166 PDNVDFIHKDISGATEDIK---SLTFDAVALDMLNPH 199 (336)
T ss_dssp CCCEEEEESCTTCCC----------EEEEEECSSSTT
T ss_pred CCceEEEECChHHcccccC---CCCeeEEEECCCCHH
Confidence 3567888888876532332 346999999986443
No 97
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=31.79 E-value=24 Score=26.55 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=20.0
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPP 149 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPP 149 (161)
+.-.|..+|+... .++ ..+||+|++|+|
T Consensus 148 ~~v~~~~~d~~~~--~~~---~~~~D~v~~~~~ 175 (258)
T 2pwy_A 148 ENVRFHLGKLEEA--ELE---EAAYDGVALDLM 175 (258)
T ss_dssp CCEEEEESCGGGC--CCC---TTCEEEEEEESS
T ss_pred CCEEEEECchhhc--CCC---CCCcCEEEECCc
Confidence 4567888888764 132 357999999987
No 98
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=31.78 E-value=18 Score=32.43 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=13.5
Q ss_pred CCCccEEEEcCCCCCc
Q 031322 138 DCGFNLIVIDPPWENG 153 (161)
Q Consensus 138 ~~~FdlIvlDPPW~Nk 153 (161)
..+||+||..|||--+
T Consensus 327 ~~~fD~Iv~NPPf~~~ 342 (544)
T 3khk_A 327 DLRADFVMTNPPFNMK 342 (544)
T ss_dssp TCCEEEEEECCCSSCC
T ss_pred cccccEEEECCCcCCc
Confidence 4689999999999753
No 99
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=31.26 E-value=31 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=21.2
Q ss_pred cCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 115 LPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 115 iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
+.+...|+.+|+... +. ...+||+|++|||-+
T Consensus 138 ~~~~~~~~~~d~~~~---~~--~~~~~D~v~~~~~~~ 169 (248)
T 2yvl_A 138 LGKNVKFFNVDFKDA---EV--PEGIFHAAFVDVREP 169 (248)
T ss_dssp CCTTEEEECSCTTTS---CC--CTTCBSEEEECSSCG
T ss_pred CCCcEEEEEcChhhc---cc--CCCcccEEEECCcCH
Confidence 345567777887652 21 235799999999844
No 100
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=31.24 E-value=9.1 Score=28.89 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=21.2
Q ss_pred CCCccccCCchhhc------ccCCCCCCCCccEEEEcCC
Q 031322 117 RESCFFMSDLGQIH------NLIPADSDCGFNLIVIDPP 149 (161)
Q Consensus 117 p~S~Fl~~di~~~~------~l~~~~~~~~FdlIvlDPP 149 (161)
++..|+.+|+.... ..+......+||+||.|++
T Consensus 62 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~ 100 (191)
T 3dou_A 62 AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAM 100 (191)
T ss_dssp TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCC
T ss_pred CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCC
Confidence 57889999987643 1121000138999999986
No 101
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=30.85 E-value=20 Score=29.66 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=21.2
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPP 149 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPP 149 (161)
.++-.++.+|....-.. ...+||+|++|++
T Consensus 161 ~~rv~~~~~D~~~~l~~----~~~~fD~Ii~d~~ 190 (314)
T 2b2c_A 161 HPKLDLFCGDGFEFLKN----HKNEFDVIITDSS 190 (314)
T ss_dssp CTTEEEECSCHHHHHHH----CTTCEEEEEECCC
T ss_pred CCCEEEEEChHHHHHHh----cCCCceEEEEcCC
Confidence 45678888988763211 2467999999995
No 102
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=29.92 E-value=33 Score=28.58 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=22.8
Q ss_pred cCCchhhcccCCCCCCCCccEEEEcCCCCCccccc
Q 031322 123 MSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQ 157 (161)
Q Consensus 123 ~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSvrR 157 (161)
.+||..+.... -+.+|+|+.+||...=|.-.
T Consensus 58 ~~Di~~~~~~~----~~~~D~l~~gpPCQ~fS~ag 88 (327)
T 2c7p_A 58 EGDITQVNEKT----IPDHDILCAGFPCQAFSISG 88 (327)
T ss_dssp BSCGGGSCGGG----SCCCSEEEEECCCTTTCTTS
T ss_pred cCCHHHcCHhh----CCCCCEEEECCCCCCcchhc
Confidence 68888765321 24599999999999888653
No 103
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=29.39 E-value=18 Score=30.47 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=22.2
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++-+++.+|....-..+ ...+||+||+|.+-+
T Consensus 139 ~rv~v~~~Da~~~l~~~---~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 139 PRVKIRVDDARMVAESF---TPASRDVIIRDVFAG 170 (317)
T ss_dssp TTEEEEESCHHHHHHTC---CTTCEEEEEECCSTT
T ss_pred CceEEEECcHHHHHhhc---cCCCCCEEEECCCCc
Confidence 56678889987653323 246799999997543
No 104
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=29.13 E-value=20 Score=30.67 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=20.0
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS 154 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS 154 (161)
...+..+|.-... ...+||+||.+|||-.+.
T Consensus 237 ~~~i~~gD~l~~~------~~~~fD~Iv~NPPf~~~~ 267 (445)
T 2okc_A 237 RSPIVCEDSLEKE------PSTLVDVILANPPFGTRP 267 (445)
T ss_dssp CCSEEECCTTTSC------CSSCEEEEEECCCSSCCC
T ss_pred CCCEeeCCCCCCc------ccCCcCEEEECCCCCCcc
Confidence 3456666653321 124899999999987643
No 105
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=27.05 E-value=19 Score=27.07 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=21.2
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
.+-.|+.+|+...-.... ...+||+|++|++.+
T Consensus 105 ~~v~~~~~d~~~~~~~~~--~~~~fD~I~~~~~~~ 137 (233)
T 2gpy_A 105 SRIELLFGDALQLGEKLE--LYPLFDVLFIDAAKG 137 (233)
T ss_dssp TTEEEECSCGGGSHHHHT--TSCCEEEEEEEGGGS
T ss_pred CcEEEEECCHHHHHHhcc--cCCCccEEEECCCHH
Confidence 446777888766422221 135799999998865
No 106
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=26.83 E-value=24 Score=26.05 Aligned_cols=32 Identities=13% Similarity=-0.054 Sum_probs=21.2
Q ss_pred CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN 152 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N 152 (161)
.++-+|+.+|....-+.+ .. ||+|++|.++.+
T Consensus 107 ~~~v~~~~~d~~~~~~~~----~~-fD~v~~~~~~~~ 138 (210)
T 3c3p_A 107 IDRVELQVGDPLGIAAGQ----RD-IDILFMDCDVFN 138 (210)
T ss_dssp GGGEEEEESCHHHHHTTC----CS-EEEEEEETTTSC
T ss_pred CceEEEEEecHHHHhccC----CC-CCEEEEcCChhh
Confidence 345678888887653222 24 999999977653
No 107
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=26.41 E-value=7.9 Score=30.28 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=23.3
Q ss_pred CCCCccccCCchhhcccCCC-CCCCCccEEEEcCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPA-DSDCGFNLIVIDPPWE 151 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~-~~~~~FdlIvlDPPW~ 151 (161)
.++-+|+.+|....-..+.. ....+||+|++|.+..
T Consensus 111 ~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~ 147 (242)
T 3r3h_A 111 EHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKT 147 (242)
T ss_dssp TTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGG
T ss_pred CCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChH
Confidence 45678888998765432211 0136799999998754
No 108
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=25.62 E-value=8.6 Score=29.76 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=22.2
Q ss_pred CCCCccccCCchhhcccCCCC--CCCCccEEEEcCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPAD--SDCGFNLIVIDPPWE 151 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~--~~~~FdlIvlDPPW~ 151 (161)
.++-.|+.+|..+.-+.+... ...+||+|++|.+..
T Consensus 121 ~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~ 158 (237)
T 3c3y_A 121 EHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP 158 (237)
T ss_dssp GGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG
T ss_pred CCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH
Confidence 445678888887653222111 136799999997543
No 109
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=25.38 E-value=34 Score=23.36 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=21.7
Q ss_pred CCCccccCCchhhc------ccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIH------NLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~------~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++..|+.+|+.... +.++ ..+||+|+.|+|..
T Consensus 62 ~~~~~~~~d~~~~~~~~~~~~~~~---~~~~D~i~~~~~~~ 99 (180)
T 1ej0_A 62 VGVDFLQGDFRDELVMKALLERVG---DSKVQVVMSDMAPN 99 (180)
T ss_dssp TTEEEEESCTTSHHHHHHHHHHHT---TCCEEEEEECCCCC
T ss_pred CcEEEEEcccccchhhhhhhccCC---CCceeEEEECCCcc
Confidence 45677778876643 1132 35799999999964
No 110
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=25.00 E-value=24 Score=28.21 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++-.++.+|....-.. ...+||+|++|++-+
T Consensus 132 ~~v~~~~~D~~~~l~~----~~~~fD~Ii~d~~~~ 162 (283)
T 2i7c_A 132 KRVNVFIEDASKFLEN----VTNTYDVIIVDSSDP 162 (283)
T ss_dssp TTEEEEESCHHHHHHH----CCSCEEEEEEECCCT
T ss_pred CcEEEEECChHHHHHh----CCCCceEEEEcCCCC
Confidence 5567888888764221 146799999998644
No 111
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=24.64 E-value=49 Score=23.19 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=18.9
Q ss_pred CCccccCCchhhcccCCCCCCCCccEEEEcCC
Q 031322 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPP 149 (161)
Q Consensus 118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPP 149 (161)
+-.|+.+|+..+. + ...+||+|++.|+
T Consensus 90 ~~~~~~~d~~~~~--~---~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 90 EARWVVGDLSVDQ--I---SETDFDLIVSAGN 116 (195)
T ss_dssp TSEEEECCTTTSC--C---CCCCEEEEEECCC
T ss_pred CCcEEEcccccCC--C---CCCceeEEEECCc
Confidence 3577888876642 2 2467999999865
No 112
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=24.53 E-value=34 Score=27.04 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=12.0
Q ss_pred CCCccEEEEc-CCCCC
Q 031322 138 DCGFNLIVID-PPWEN 152 (161)
Q Consensus 138 ~~~FdlIvlD-PPW~N 152 (161)
...||+||+| ||..+
T Consensus 154 ~~~yD~ViiD~p~~~~ 169 (307)
T 3end_A 154 LDDTDVVIFDVLGDVV 169 (307)
T ss_dssp TSSCSEEEEEECCSSC
T ss_pred cccCCEEEEeCCCccc
Confidence 4579999999 77654
No 113
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=24.34 E-value=29 Score=30.85 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=12.6
Q ss_pred CCCccEEEEcCCCCC
Q 031322 138 DCGFNLIVIDPPWEN 152 (161)
Q Consensus 138 ~~~FdlIvlDPPW~N 152 (161)
..+||+||..|||-.
T Consensus 300 ~~~fD~Il~NPPf~~ 314 (530)
T 3ufb_A 300 KDRVDVILTNPPFGG 314 (530)
T ss_dssp GGCBSEEEECCCSSC
T ss_pred cccceEEEecCCCCc
Confidence 457999999999953
No 114
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=23.42 E-value=34 Score=28.63 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=12.5
Q ss_pred CCCCccEEEEcCCCCC
Q 031322 137 SDCGFNLIVIDPPWEN 152 (161)
Q Consensus 137 ~~~~FdlIvlDPPW~N 152 (161)
...+||+||+|.+=|.
T Consensus 154 ~~~~yDvIi~D~~dp~ 169 (294)
T 3o4f_A 154 TSQTFDVIISDCTDPI 169 (294)
T ss_dssp SSCCEEEEEESCCCCC
T ss_pred ccccCCEEEEeCCCcC
Confidence 5678999999976443
No 115
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=22.21 E-value=57 Score=24.54 Aligned_cols=33 Identities=9% Similarity=-0.013 Sum_probs=22.0
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE 151 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~ 151 (161)
++..|+.+|+......++. ..+||+|+.|+|-+
T Consensus 122 ~~v~~~~~d~~~~~~~~~~--~~~~D~v~~~~~~~ 154 (230)
T 1fbn_A 122 ENIIPILGDANKPQEYANI--VEKVDVIYEDVAQP 154 (230)
T ss_dssp TTEEEEECCTTCGGGGTTT--SCCEEEEEECCCST
T ss_pred CCeEEEECCCCCccccccc--CccEEEEEEecCCh
Confidence 4567888888764332322 25799999998765
No 116
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=22.15 E-value=20 Score=28.03 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCCCccccCCchhhcccCCCC--CCCCccEEEEcCCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPAD--SDCGFNLIVIDPPWEN 152 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~~--~~~~FdlIvlDPPW~N 152 (161)
.++-.|+.+|....-+.+... ....||+|++|.+..+
T Consensus 130 ~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~ 168 (247)
T 1sui_A 130 DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDN 168 (247)
T ss_dssp GGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTT
T ss_pred CCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHH
Confidence 345678888886643222110 1357999999987543
No 117
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=22.11 E-value=35 Score=27.47 Aligned_cols=29 Identities=7% Similarity=0.210 Sum_probs=18.7
Q ss_pred ccccCCchhhcccCCCCCCCCccEEEEcC
Q 031322 120 CFFMSDLGQIHNLIPADSDCGFNLIVIDP 148 (161)
Q Consensus 120 ~Fl~~di~~~~~l~~~~~~~~FdlIvlDP 148 (161)
+.+.+|+.+.-+.+++.....||+|.+||
T Consensus 153 ~l~~GDa~~~l~~~~~~~~~~~D~iflD~ 181 (257)
T 2qy6_A 153 DLWFGDINELISQLDDSLNQKVDAWFLDG 181 (257)
T ss_dssp EEEESCHHHHGGGSCGGGTTCEEEEEECS
T ss_pred EEEECcHHHHHhhcccccCCeEEEEEECC
Confidence 46778887754333221123799999997
No 118
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=20.95 E-value=40 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=21.1
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEc
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVID 147 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlD 147 (161)
++-.|+.+|+.++...++ +.+||+|+.|
T Consensus 108 ~~v~~~~~d~~~~~~~~~---~~~fD~V~~d 135 (236)
T 1zx0_A 108 HKVIPLKGLWEDVAPTLP---DGHFDGILYD 135 (236)
T ss_dssp SEEEEEESCHHHHGGGSC---TTCEEEEEEC
T ss_pred CCeEEEecCHHHhhcccC---CCceEEEEEC
Confidence 456789999988754453 3679999995
No 119
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=20.91 E-value=15 Score=28.09 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=21.5
Q ss_pred CCCCccccCCchhhcccCCC-CCCCCccEEEEcCCCC
Q 031322 116 PRESCFFMSDLGQIHNLIPA-DSDCGFNLIVIDPPWE 151 (161)
Q Consensus 116 Pp~S~Fl~~di~~~~~l~~~-~~~~~FdlIvlDPPW~ 151 (161)
.++-.|+.+|....-..++. ....+||+|++|.+.+
T Consensus 123 ~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~ 159 (232)
T 3cbg_A 123 AEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR 159 (232)
T ss_dssp GGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG
T ss_pred CCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHH
Confidence 34457788887654222211 1116799999998743
No 120
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=20.91 E-value=32 Score=33.39 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=12.3
Q ss_pred CCCccEEEEcCCCC
Q 031322 138 DCGFNLIVIDPPWE 151 (161)
Q Consensus 138 ~~~FdlIvlDPPW~ 151 (161)
..+||+||.+|||-
T Consensus 397 ~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 397 FANVSVVVMNPPYV 410 (878)
T ss_dssp GTTEEEEEECCBCC
T ss_pred cCCCCEEEECCCcc
Confidence 46799999999994
No 121
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=20.16 E-value=56 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=20.3
Q ss_pred CCCccccCCchhhcccCCCCCCCCccEEEEcCC
Q 031322 117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPP 149 (161)
Q Consensus 117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPP 149 (161)
++-.|+.+|+..+. + ...+||+|+..++
T Consensus 85 ~~~~~~~~d~~~~~--~---~~~~~D~v~~~~~ 112 (227)
T 1ve3_A 85 SNVEFIVGDARKLS--F---EDKTFDYVIFIDS 112 (227)
T ss_dssp CCCEEEECCTTSCC--S---CTTCEEEEEEESC
T ss_pred CCceEEECchhcCC--C---CCCcEEEEEEcCc
Confidence 45678888887643 2 2457999999988
Done!