Query 031323
Match_columns 161
No_of_seqs 118 out of 517
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 5E-51 1.7E-55 316.0 14.9 160 2-161 2-161 (169)
2 4b4t_O 26S proteasome regulato 100.0 2.5E-30 8.6E-35 221.8 7.6 137 23-161 211-357 (393)
3 3txn_A 26S proteasome regulato 99.4 7.6E-13 2.6E-17 113.7 11.2 135 24-160 221-365 (394)
4 4b4t_R RPN7, 26S proteasome re 98.9 1.3E-08 4.5E-13 87.5 11.6 153 6-160 223-396 (429)
5 3t5x_A PCI domain-containing p 98.7 4.7E-09 1.6E-13 82.5 3.0 96 61-157 82-193 (203)
6 4b4t_P 26S proteasome regulato 98.7 5E-08 1.7E-12 84.4 9.5 148 6-156 233-404 (445)
7 4b4t_Q 26S proteasome regulato 98.4 1.5E-06 5.2E-11 71.2 10.2 99 58-158 295-403 (434)
8 1ufm_A COP9 complex subunit 4; 98.4 8.3E-07 2.8E-11 60.7 7.0 58 98-157 19-76 (84)
9 3t5v_B Nuclear mRNA export pro 97.9 5.3E-06 1.8E-10 72.4 4.1 95 62-157 299-429 (455)
10 4b4t_S RPN3, 26S proteasome re 97.9 8.4E-06 2.9E-10 72.2 4.2 94 60-154 343-445 (523)
11 1wi9_A Protein C20ORF116 homol 94.5 0.089 3E-06 34.6 5.5 55 100-156 12-66 (72)
12 4b0z_A RPN12, 26S proteasome r 93.9 0.12 4.1E-06 40.6 6.2 74 60-134 136-214 (229)
13 1qgp_A Protein (double strande 91.0 0.6 2.1E-05 30.4 5.7 49 95-145 17-65 (77)
14 1qbj_A Protein (double-strande 90.4 1.2 4E-05 29.4 6.8 58 94-154 12-69 (81)
15 3lwf_A LIN1550 protein, putati 87.6 1.4 4.7E-05 32.7 6.2 46 97-144 30-77 (159)
16 2hzt_A Putative HTH-type trans 87.3 2.7 9.1E-05 28.4 7.2 50 107-158 25-75 (107)
17 2y75_A HTH-type transcriptiona 87.0 1.5 5E-05 30.6 5.8 48 95-144 12-59 (129)
18 3t8r_A Staphylococcus aureus C 86.8 1.1 3.7E-05 32.3 5.2 44 99-144 16-61 (143)
19 1xn7_A Hypothetical protein YH 84.5 2 7E-05 28.1 5.1 44 97-142 4-47 (78)
20 3cuo_A Uncharacterized HTH-typ 84.4 4 0.00014 26.3 6.7 42 105-148 34-75 (99)
21 1oyi_A Double-stranded RNA-bin 84.3 1.5 5.3E-05 29.2 4.5 46 92-143 17-62 (82)
22 2heo_A Z-DNA binding protein 1 83.8 2.4 8.1E-05 26.5 5.1 46 94-143 12-57 (67)
23 2v79_A DNA replication protein 82.8 6.2 0.00021 28.2 7.6 62 94-157 35-99 (135)
24 1sfx_A Conserved hypothetical 82.5 5 0.00017 25.9 6.6 38 108-147 33-70 (109)
25 1z7u_A Hypothetical protein EF 80.9 5.9 0.0002 26.8 6.7 49 108-158 34-83 (112)
26 1ylf_A RRF2 family protein; st 80.8 2.7 9.3E-05 30.2 5.1 43 100-144 20-63 (149)
27 2p5v_A Transcriptional regulat 80.7 3.6 0.00012 29.7 5.8 36 106-143 21-56 (162)
28 1xd7_A YWNA; structural genomi 80.6 3.1 0.0001 29.8 5.3 45 97-144 12-56 (145)
29 3k69_A Putative transcription 80.5 4 0.00014 30.0 6.0 36 107-144 26-61 (162)
30 2pg4_A Uncharacterized protein 80.3 2.6 9E-05 27.5 4.5 45 96-142 16-62 (95)
31 1yyv_A Putative transcriptiona 80.2 6.5 0.00022 27.7 6.9 61 93-157 34-95 (131)
32 2k02_A Ferrous iron transport 79.8 2.3 7.9E-05 28.5 4.1 45 98-144 5-49 (87)
33 3i4p_A Transcriptional regulat 79.7 2.7 9.2E-05 30.6 4.8 47 100-148 8-57 (162)
34 1ub9_A Hypothetical protein PH 79.6 5.5 0.00019 25.6 6.0 38 108-147 29-66 (100)
35 3df8_A Possible HXLR family tr 79.6 5.4 0.00019 27.1 6.1 52 93-146 26-78 (111)
36 2cg4_A Regulatory protein ASNC 78.9 3.4 0.00011 29.4 5.0 42 105-148 18-62 (152)
37 2cfx_A HTH-type transcriptiona 78.8 4.2 0.00014 28.7 5.5 42 105-148 15-59 (144)
38 2dbb_A Putative HTH-type trans 78.3 3.7 0.00013 29.1 5.1 38 105-144 19-56 (151)
39 2fsw_A PG_0823 protein; alpha- 77.7 9.5 0.00032 25.5 6.8 49 107-157 36-85 (107)
40 2jt1_A PEFI protein; solution 77.7 3 0.0001 27.2 4.0 35 107-143 22-56 (77)
41 2pn6_A ST1022, 150AA long hypo 76.3 3.8 0.00013 28.9 4.7 45 101-147 9-56 (150)
42 2htj_A P fimbrial regulatory p 76.3 9.7 0.00033 24.1 6.3 37 106-144 11-47 (81)
43 2nnn_A Probable transcriptiona 75.8 8.3 0.00028 26.1 6.3 47 108-156 51-97 (140)
44 3tgn_A ADC operon repressor AD 75.8 5.1 0.00018 27.5 5.2 47 110-158 52-98 (146)
45 3bpv_A Transcriptional regulat 75.8 9.4 0.00032 25.8 6.5 49 107-157 41-89 (138)
46 3k0l_A Repressor protein; heli 75.4 9.3 0.00032 26.9 6.6 49 108-158 59-107 (162)
47 3pqk_A Biofilm growth-associat 75.3 14 0.00049 24.1 7.5 53 93-151 24-76 (102)
48 2vn2_A DNAD, chromosome replic 75.1 10 0.00035 26.5 6.7 54 93-148 34-88 (128)
49 3jth_A Transcription activator 75.1 11 0.00038 24.4 6.5 40 108-149 35-74 (98)
50 2ia0_A Putative HTH-type trans 75.0 5.6 0.00019 29.2 5.4 41 106-148 28-71 (171)
51 3bdd_A Regulatory protein MARR 74.7 8.1 0.00028 26.2 6.0 42 108-151 44-85 (142)
52 1r1u_A CZRA, repressor protein 74.0 9.5 0.00032 25.4 6.0 48 93-146 27-74 (106)
53 2f2e_A PA1607; transcription f 74.0 13 0.00045 26.4 7.1 41 108-150 36-76 (146)
54 2cyy_A Putative HTH-type trans 73.8 4.1 0.00014 29.0 4.3 37 105-143 17-53 (151)
55 2gxg_A 146AA long hypothetical 73.5 13 0.00045 25.2 6.9 43 107-151 48-90 (146)
56 2a61_A Transcriptional regulat 73.4 11 0.00037 25.7 6.4 48 108-157 46-93 (145)
57 3bja_A Transcriptional regulat 73.4 7.4 0.00025 26.3 5.5 44 107-152 45-88 (139)
58 2e1c_A Putative HTH-type trans 72.8 4.5 0.00015 29.8 4.4 36 106-143 38-73 (171)
59 2w25_A Probable transcriptiona 72.3 7.5 0.00026 27.4 5.4 37 106-144 18-54 (150)
60 1jgs_A Multiple antibiotic res 72.2 10 0.00035 25.6 6.0 45 108-154 47-91 (138)
61 4b4t_T 26S proteasome regulato 71.8 10 0.00036 30.3 6.7 99 38-140 118-226 (274)
62 2hr3_A Probable transcriptiona 71.8 10 0.00035 25.9 6.0 43 107-151 48-90 (147)
63 2fbi_A Probable transcriptiona 71.8 9 0.00031 25.9 5.6 48 108-157 49-96 (142)
64 3eco_A MEPR; mutlidrug efflux 71.5 12 0.00041 25.4 6.2 48 108-157 46-93 (139)
65 3f6o_A Probable transcriptiona 71.2 11 0.00038 25.6 5.9 49 93-147 19-67 (118)
66 3fm5_A Transcriptional regulat 71.0 6.7 0.00023 27.2 4.8 52 104-157 49-100 (150)
67 1i1g_A Transcriptional regulat 70.9 6.1 0.00021 27.4 4.6 37 106-144 15-51 (141)
68 4a5n_A Uncharacterized HTH-typ 70.8 25 0.00084 24.9 7.9 54 96-153 28-82 (131)
69 2rdp_A Putative transcriptiona 70.3 12 0.0004 25.7 6.0 45 108-154 55-99 (150)
70 2kko_A Possible transcriptiona 69.7 9.6 0.00033 25.6 5.3 38 108-147 37-74 (108)
71 1u2w_A CADC repressor, cadmium 69.6 11 0.00037 25.9 5.6 38 107-146 54-91 (122)
72 1lj9_A Transcriptional regulat 68.7 12 0.00041 25.5 5.7 43 108-152 42-84 (144)
73 3hsr_A HTH-type transcriptiona 68.4 8.8 0.0003 26.4 5.0 50 106-157 47-96 (140)
74 3bro_A Transcriptional regulat 68.4 16 0.00055 24.6 6.3 41 109-151 50-90 (141)
75 2oqg_A Possible transcriptiona 68.1 13 0.00044 24.5 5.6 47 94-146 23-69 (114)
76 2fbh_A Transcriptional regulat 67.6 14 0.00048 25.0 5.9 44 106-151 49-92 (146)
77 2qvo_A Uncharacterized protein 67.1 16 0.00056 23.6 5.9 46 107-154 28-73 (95)
78 2p7v_B Sigma-70, RNA polymeras 66.7 7.8 0.00027 23.6 4.0 27 108-136 24-50 (68)
79 3deu_A Transcriptional regulat 66.5 13 0.00045 26.5 5.8 53 104-158 63-115 (166)
80 1j5y_A Transcriptional regulat 66.4 20 0.00068 26.4 6.9 50 92-143 18-69 (187)
81 3s2w_A Transcriptional regulat 66.3 12 0.0004 26.2 5.4 49 107-157 62-110 (159)
82 3cdh_A Transcriptional regulat 66.3 11 0.00038 26.1 5.2 44 106-151 54-97 (155)
83 4aik_A Transcriptional regulat 66.3 26 0.0009 24.6 7.3 57 101-159 38-94 (151)
84 2eth_A Transcriptional regulat 66.3 17 0.00057 25.3 6.2 43 108-152 57-99 (154)
85 2bv6_A MGRA, HTH-type transcri 65.7 14 0.00047 25.2 5.5 43 107-151 49-91 (142)
86 2x4h_A Hypothetical protein SS 65.7 18 0.00061 24.7 6.2 55 86-144 10-64 (139)
87 1y0u_A Arsenical resistance op 65.6 15 0.00051 23.8 5.5 44 94-144 33-76 (96)
88 4hbl_A Transcriptional regulat 65.2 8.8 0.0003 26.7 4.5 49 107-157 53-101 (149)
89 1ku3_A Sigma factor SIGA; heli 64.4 8.5 0.00029 23.8 3.9 27 108-136 29-55 (73)
90 3ech_A MEXR, multidrug resista 64.4 7.3 0.00025 26.7 3.9 45 108-154 50-94 (142)
91 3f3x_A Transcriptional regulat 64.3 22 0.00074 24.2 6.4 46 111-158 52-97 (144)
92 1tbx_A ORF F-93, hypothetical 64.1 22 0.00076 22.9 6.1 46 107-154 20-69 (99)
93 3cjn_A Transcriptional regulat 64.1 16 0.00055 25.5 5.8 43 107-151 64-106 (162)
94 4b8x_A SCO5413, possible MARR- 64.0 16 0.00054 25.6 5.7 60 96-158 39-98 (147)
95 2nyx_A Probable transcriptiona 63.3 15 0.00051 26.1 5.5 45 108-154 58-102 (168)
96 1on2_A Transcriptional regulat 63.0 20 0.00068 24.6 6.0 43 100-144 13-55 (142)
97 2d1h_A ST1889, 109AA long hypo 62.2 19 0.00065 23.0 5.5 44 103-148 30-73 (109)
98 3oop_A LIN2960 protein; protei 62.0 8.5 0.00029 26.4 3.8 42 108-151 50-91 (143)
99 1tty_A Sigma-A, RNA polymerase 61.6 9.7 0.00033 24.5 3.9 28 107-136 36-63 (87)
100 3nrv_A Putative transcriptiona 61.3 12 0.00042 25.6 4.6 44 107-152 52-95 (148)
101 2pex_A Transcriptional regulat 61.3 18 0.00062 24.9 5.6 43 107-151 59-101 (153)
102 2qww_A Transcriptional regulat 61.2 10 0.00035 26.3 4.2 42 108-151 54-97 (154)
103 3u2r_A Regulatory protein MARR 61.0 18 0.00063 25.5 5.6 50 107-158 60-109 (168)
104 3f6v_A Possible transcriptiona 60.6 17 0.00059 26.1 5.4 51 93-149 59-109 (151)
105 1s3j_A YUSO protein; structura 60.5 15 0.00051 25.3 5.0 42 108-151 50-91 (155)
106 3nqo_A MARR-family transcripti 60.5 25 0.00086 25.6 6.5 50 107-158 55-104 (189)
107 2jsc_A Transcriptional regulat 60.5 23 0.00079 24.0 5.9 49 93-147 22-70 (118)
108 3t72_q RNA polymerase sigma fa 60.3 9.4 0.00032 25.8 3.7 28 107-136 37-64 (99)
109 3boq_A Transcriptional regulat 59.9 12 0.00042 26.0 4.4 45 106-152 59-103 (160)
110 2fa5_A Transcriptional regulat 58.7 13 0.00045 25.9 4.5 43 107-151 61-103 (162)
111 3bj6_A Transcriptional regulat 58.6 17 0.00058 24.9 5.0 42 108-151 53-94 (152)
112 1tc3_C Protein (TC3 transposas 57.9 8.7 0.0003 20.9 2.8 22 110-132 22-43 (51)
113 2k6x_A Sigma-A, RNA polymerase 57.3 13 0.00043 23.6 3.7 39 100-140 14-57 (72)
114 2w48_A Sorbitol operon regulat 56.7 27 0.00093 27.8 6.5 53 94-148 6-58 (315)
115 1r1t_A Transcriptional repress 56.6 38 0.0013 23.1 6.5 37 108-146 58-94 (122)
116 1ku9_A Hypothetical protein MJ 56.6 25 0.00086 23.7 5.6 51 96-150 30-80 (152)
117 3hug_A RNA polymerase sigma fa 56.4 10 0.00035 24.5 3.3 26 109-136 53-78 (92)
118 1uly_A Hypothetical protein PH 56.2 27 0.00092 26.1 6.0 35 108-144 32-66 (192)
119 3g3z_A NMB1585, transcriptiona 56.0 9.3 0.00032 26.2 3.2 41 109-151 45-85 (145)
120 2wte_A CSA3; antiviral protein 55.5 29 0.001 27.0 6.4 44 108-155 165-208 (244)
121 3c57_A Two component transcrip 55.2 30 0.001 22.5 5.6 25 109-135 42-66 (95)
122 2o8x_A Probable RNA polymerase 51.9 15 0.00053 21.8 3.4 25 109-135 31-55 (70)
123 2jpc_A SSRB; DNA binding prote 51.1 31 0.0011 20.0 4.7 23 109-132 13-35 (61)
124 1z91_A Organic hydroperoxide r 50.4 14 0.00049 25.2 3.4 42 108-151 53-94 (147)
125 1z05_A Transcriptional regulat 50.1 23 0.00078 29.5 5.2 51 92-144 36-86 (429)
126 2oa4_A SIR5; structure, struct 50.0 21 0.00072 24.5 4.1 41 96-140 38-78 (101)
127 3e6m_A MARR family transcripti 49.9 15 0.00052 25.7 3.5 42 108-151 66-107 (161)
128 2fxa_A Protease production reg 49.5 23 0.00078 26.4 4.7 49 108-158 61-109 (207)
129 3ulq_B Transcriptional regulat 48.2 34 0.0012 22.2 4.9 25 109-135 44-68 (90)
130 2lfw_A PHYR sigma-like domain; 48.1 15 0.0005 26.0 3.2 27 108-136 108-134 (157)
131 1eij_A Hypothetical protein MT 47.3 6.9 0.00024 25.9 1.2 23 124-147 36-58 (80)
132 2qlz_A Transcription factor PF 46.6 22 0.00075 27.7 4.2 34 107-142 176-209 (232)
133 1je8_A Nitrate/nitrite respons 46.0 39 0.0013 21.3 4.8 25 109-135 36-60 (82)
134 1z6r_A MLC protein; transcript 45.9 45 0.0015 27.3 6.3 49 93-143 14-62 (406)
135 2fh0_A Hypothetical 16.0 kDa p 44.5 7.3 0.00025 25.9 1.0 23 124-147 34-56 (81)
136 2lkp_A Transcriptional regulat 44.5 60 0.0021 21.4 5.8 37 108-146 44-80 (119)
137 3hrs_A Metalloregulator SCAR; 44.4 39 0.0013 25.5 5.3 45 99-145 10-54 (214)
138 1mkm_A ICLR transcriptional re 43.9 42 0.0014 25.7 5.5 45 98-144 11-56 (249)
139 1q1h_A TFE, transcription fact 43.9 45 0.0015 21.8 5.1 37 106-144 30-66 (110)
140 3kor_A Possible Trp repressor; 43.8 35 0.0012 24.2 4.5 27 110-139 76-102 (119)
141 3eyi_A Z-DNA-binding protein 1 43.8 48 0.0017 21.3 4.8 65 85-157 5-69 (72)
142 3mzy_A RNA polymerase sigma-H 43.5 21 0.00073 24.4 3.5 27 108-136 123-149 (164)
143 1p4w_A RCSB; solution structur 42.9 38 0.0013 22.5 4.5 23 109-132 49-71 (99)
144 3b73_A PHIH1 repressor-like pr 42.3 30 0.001 23.8 4.0 36 107-144 25-62 (111)
145 3r0a_A Putative transcriptiona 41.2 81 0.0028 21.3 7.7 44 103-148 35-79 (123)
146 3kp7_A Transcriptional regulat 40.6 22 0.00076 24.4 3.2 44 107-152 49-94 (151)
147 2x48_A CAG38821; archeal virus 40.6 22 0.00076 20.3 2.7 21 110-131 32-52 (55)
148 2p4w_A Transcriptional regulat 40.5 78 0.0027 23.7 6.5 49 93-147 16-64 (202)
149 1or7_A Sigma-24, RNA polymeras 39.8 26 0.00089 25.0 3.5 27 108-136 155-181 (194)
150 2frh_A SARA, staphylococcal ac 39.5 25 0.00085 23.9 3.2 45 108-154 52-96 (127)
151 2fu4_A Ferric uptake regulatio 39.5 66 0.0023 19.8 5.3 36 108-145 32-72 (83)
152 2dk5_A DNA-directed RNA polyme 39.4 65 0.0022 21.1 5.2 46 107-154 34-81 (91)
153 1r7j_A Conserved hypothetical 39.2 80 0.0027 20.7 6.8 33 110-144 21-53 (95)
154 3k9t_A Putative peptidase; str 38.8 30 0.001 29.7 4.2 47 93-143 388-434 (435)
155 1x3u_A Transcriptional regulat 38.0 35 0.0012 20.8 3.5 26 108-135 30-55 (79)
156 1jko_C HIN recombinase, DNA-in 37.9 40 0.0014 18.3 3.5 21 110-131 22-42 (52)
157 3jw4_A Transcriptional regulat 37.5 18 0.00063 24.8 2.3 44 108-153 56-99 (148)
158 3t5v_A Nuclear mRNA export pro 36.9 38 0.0013 27.6 4.4 61 72-132 177-247 (316)
159 1fse_A GERE; helix-turn-helix 36.7 66 0.0023 19.0 5.0 23 109-132 26-48 (74)
160 1rz4_A Eukaryotic translation 36.4 1.4E+02 0.0049 22.8 10.6 111 22-141 62-180 (226)
161 2xrn_A HTH-type transcriptiona 35.8 55 0.0019 24.9 5.0 45 97-143 8-53 (241)
162 2rnj_A Response regulator prot 35.7 28 0.00094 22.3 2.8 25 109-135 44-68 (91)
163 1ldj_A Cullin homolog 1, CUL-1 35.5 45 0.0015 30.3 5.0 43 98-142 592-634 (760)
164 3lmm_A Uncharacterized protein 34.9 58 0.002 28.7 5.6 46 97-144 432-482 (583)
165 1xmk_A Double-stranded RNA-spe 34.2 45 0.0016 21.6 3.6 36 106-143 22-58 (79)
166 2p5k_A Arginine repressor; DNA 33.5 72 0.0024 18.5 5.7 42 95-141 5-51 (64)
167 2h09_A Transcriptional regulat 33.1 81 0.0028 21.7 5.2 45 106-155 51-95 (155)
168 2xvc_A ESCRT-III, SSO0910; cel 33.1 63 0.0022 20.0 3.9 37 105-143 21-57 (59)
169 1wcn_A Transcription elongatio 32.8 61 0.0021 20.3 4.0 52 84-141 12-66 (70)
170 1xsv_A Hypothetical UPF0122 pr 32.5 44 0.0015 22.6 3.6 25 109-135 41-65 (113)
171 2cru_A Programmed cell death p 32.3 14 0.0005 26.1 1.0 23 124-147 66-88 (118)
172 2fbk_A Transcriptional regulat 32.0 28 0.00095 24.9 2.6 41 109-151 86-126 (181)
173 2jrt_A Uncharacterized protein 31.9 73 0.0025 21.2 4.5 25 107-132 47-71 (95)
174 1bia_A BIRA bifunctional prote 31.7 78 0.0027 25.3 5.5 41 100-142 10-50 (321)
175 3r4k_A Transcriptional regulat 31.2 49 0.0017 25.6 4.0 55 96-154 7-62 (260)
176 2hvu_A PDCD5-like protein; YMR 30.5 15 0.00053 25.9 0.9 23 124-147 69-91 (116)
177 3k2z_A LEXA repressor; winged 30.4 1.2E+02 0.0041 22.1 6.0 38 105-144 20-57 (196)
178 3dp7_A SAM-dependent methyltra 30.3 96 0.0033 24.8 5.8 43 107-155 48-90 (363)
179 2jxn_A Uncharacterized protein 30.2 17 0.00057 26.1 1.0 23 124-147 69-91 (127)
180 1s7o_A Hypothetical UPF0122 pr 30.1 49 0.0017 22.5 3.5 26 109-136 38-63 (113)
181 3f2g_A Alkylmercury lyase; MER 29.4 64 0.0022 25.1 4.4 38 106-150 33-70 (220)
182 2o0y_A Transcriptional regulat 29.2 76 0.0026 24.4 4.9 46 96-143 24-70 (260)
183 2g7u_A Transcriptional regulat 28.0 88 0.003 23.9 5.0 46 97-144 16-62 (257)
184 2elh_A CG11849-PA, LD40883P; s 27.5 73 0.0025 20.2 3.8 22 110-132 39-60 (87)
185 3iuo_A ATP-dependent DNA helic 27.4 1.4E+02 0.0047 20.5 5.5 31 108-140 31-61 (122)
186 4a6d_A Hydroxyindole O-methylt 27.2 1.1E+02 0.0037 24.5 5.6 38 105-144 39-76 (353)
187 3mq0_A Transcriptional repress 26.7 78 0.0027 24.7 4.5 46 96-143 31-77 (275)
188 1x2m_A LAG1 longevity assuranc 26.3 44 0.0015 20.8 2.4 21 112-133 31-51 (64)
189 2ia2_A Putative transcriptiona 26.3 80 0.0027 24.3 4.5 46 96-143 22-68 (265)
190 1rp3_A RNA polymerase sigma fa 26.0 58 0.002 23.7 3.5 27 108-136 202-228 (239)
191 1v4r_A Transcriptional repress 25.5 82 0.0028 20.4 3.9 53 90-144 15-68 (102)
192 3kp1_E D-ornithine aminomutase 24.9 1.1E+02 0.0038 21.6 4.5 66 74-141 4-77 (121)
193 2obp_A Putative DNA-binding pr 24.7 1.6E+02 0.0054 19.6 8.5 63 87-151 14-76 (96)
194 3gva_A Alkyltransferase-like p 24.7 54 0.0018 22.9 2.9 25 98-122 11-35 (116)
195 2jn6_A Protein CGL2762, transp 24.2 87 0.003 19.9 3.7 27 109-137 23-49 (97)
196 2q0o_A Probable transcriptiona 23.7 1.2E+02 0.004 22.7 4.9 23 109-132 190-212 (236)
197 3cuq_A Vacuolar-sorting protei 23.4 1.2E+02 0.0041 23.7 5.0 40 100-141 159-198 (234)
198 3dpl_C Cullin-5; ubiquitin, NE 23.4 62 0.0021 26.8 3.5 27 108-136 214-240 (382)
199 1l3l_A Transcriptional activat 22.8 1.2E+02 0.0041 22.5 4.8 23 109-132 188-210 (234)
200 3cta_A Riboflavin kinase; stru 22.8 1.8E+02 0.0063 21.5 5.9 47 107-155 25-71 (230)
201 3szt_A QCSR, quorum-sensing co 22.6 1.2E+02 0.0041 22.8 4.8 23 109-132 190-212 (237)
202 3lst_A CALO1 methyltransferase 22.5 2E+02 0.0067 22.7 6.3 34 108-143 54-87 (348)
203 1dw9_A Cyanate lyase; cyanate 22.4 98 0.0033 22.8 4.0 18 105-122 22-39 (156)
204 1okr_A MECI, methicillin resis 22.1 1.7E+02 0.0058 19.0 5.2 38 107-146 22-63 (123)
205 4fx0_A Probable transcriptiona 22.1 68 0.0023 22.3 3.0 45 107-154 50-94 (148)
206 3i53_A O-methyltransferase; CO 22.1 2E+02 0.0069 22.3 6.2 34 108-143 37-70 (332)
207 2gqq_A Leucine-responsive regu 22.0 34 0.0012 24.4 1.4 36 107-144 25-60 (163)
208 3kz3_A Repressor protein CI; f 21.7 1.4E+02 0.0048 17.9 4.5 17 115-132 60-76 (80)
209 1u5t_A Appears to BE functiona 21.2 1.4E+02 0.0047 23.4 4.8 41 99-141 171-211 (233)
210 2kif_A O6-methylguanine-DNA me 20.8 52 0.0018 22.7 2.1 24 99-122 10-33 (108)
211 3cuq_B Vacuolar protein-sortin 20.7 1.3E+02 0.0045 23.0 4.7 40 101-142 160-199 (218)
212 2zkz_A Transcriptional repress 20.6 1.2E+02 0.004 19.5 3.8 36 108-146 40-75 (99)
213 2b0l_A GTP-sensing transcripti 20.6 1.3E+02 0.0044 19.9 4.1 37 106-144 39-76 (102)
214 3clo_A Transcriptional regulat 20.5 78 0.0027 24.1 3.3 25 109-135 212-236 (258)
215 2q1z_A RPOE, ECF SIGE; ECF sig 20.3 25 0.00084 24.9 0.3 27 108-136 150-176 (184)
216 2ip2_A Probable phenazine-spec 20.3 1.1E+02 0.0037 23.9 4.2 35 108-144 40-74 (334)
217 2hoe_A N-acetylglucosamine kin 20.1 86 0.003 25.4 3.7 36 107-144 31-66 (380)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=5e-51 Score=316.01 Aligned_cols=160 Identities=75% Similarity=1.131 Sum_probs=155.1
Q ss_pred cHhHHHHHHHHHHHHHhcccchHHHHHHHHHHhcCCCcccchhhhcCcccccccCCCchhHHHHHHHHhcCCHhHHhhcc
Q 031323 2 DIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNA 81 (161)
Q Consensus 2 ~~~~~~~~~l~~~l~~~~~~~~~~a~~~i~~aL~~p~i~~f~eLl~~~~v~~L~~s~~~~l~~LL~iF~~G~~~dy~~~~ 81 (161)
|+++++.++||+|+.+++++++++|.+++++||.+|++|+|||||.+|+|++|++++++|+++||++|++||+++|.+++
T Consensus 2 ~~~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~ 81 (169)
T 3chm_A 2 DIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNA 81 (169)
T ss_dssp --CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhH
Confidence 78999999999999999999999999999999999999999999999999999998899999999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeeeccC
Q 031323 82 GHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVLVRL 161 (161)
Q Consensus 82 ~~~~~L~~~~~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~~Rv 161 (161)
+.+|.|++.+.+|||+|||++||++++++||++|+++|++++.++||+||||+||+.|||+|||||++++|+|+|++||+
T Consensus 82 ~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 82 TRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp GGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 88999999999999999999999999999999999999999899999999999999999999999999999999999996
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-30 Score=221.82 Aligned_cols=137 Identities=14% Similarity=0.307 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHhcCCCcccchhhhcCcccccccC-CCchhHHHHHHHHhcCCHhHHhhc----cCCCCCCC---HHHHHH
Q 031323 23 GAALGSVIVEATSQPSLFAFSEILAVPNIAEFEG-TENSKYLDMLRLFAHGTWSDYKNN----AGHLPQLV---PDQVLK 94 (161)
Q Consensus 23 ~~~a~~~i~~aL~~p~i~~f~eLl~~~~v~~L~~-s~~~~l~~LL~iF~~G~~~dy~~~----~~~~~~L~---~~~~~K 94 (161)
...|+.+++.||.+|++|+||+|+++|.++.|++ +++.|+++||++|++|++.+|.+. .+..|.++ ....+|
T Consensus 211 ~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~k 290 (393)
T 4b4t_O 211 QQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQK 290 (393)
T ss_dssp HHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHH
Confidence 4668999999999999999999999999999975 579999999999999999999863 34456664 346899
Q ss_pred HHHHHHHHhhh--cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeeeccC
Q 031323 95 LKQLTVLTLAE--TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVLVRL 161 (161)
Q Consensus 95 lrlLtL~sLa~--~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~~Rv 161 (161)
||+++++++++ ..+.|||++|+++|+++ .++||.||| +||+.|+|+|+|||++|+|+|+|++||+
T Consensus 291 irll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli-~aI~~glI~GkIDQv~~~v~v~~~~pR~ 357 (393)
T 4b4t_O 291 ICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVM-RAISLGLLKGSIDQVNELVTISWVQPRI 357 (393)
T ss_dssp HHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHSCSSSCEETTTTEECC-------
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHH-HHHHcCCEEEEEcCCCCEEEEEeccCCC
Confidence 99999999996 46899999999999998 999999999 9999999999999999999999999996
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.43 E-value=7.6e-13 Score=113.73 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCcccccccCCCchhHHHHHHHHhcCCHhHHhh----ccCCCCC---CC---HHHHH
Q 031323 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKN----NAGHLPQ---LV---PDQVL 93 (161)
Q Consensus 24 ~~a~~~i~~aL~~p~i~~f~eLl~~~~v~~L~~s~~~~l~~LL~iF~~G~~~dy~~----~~~~~~~---L~---~~~~~ 93 (161)
+.++-++..+|..-+.+.+++++..|......+++..|+.+|+..|..|++.+|.+ +.+.+.. +. +...+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 45778899999999999999999888765555556789999999999999999986 3332221 11 34578
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeeecc
Q 031323 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVLVR 160 (161)
Q Consensus 94 KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~~R 160 (161)
++|...+..+....+.|+++.||+.++++ .++||.+++ ++|..|.|.|+|||++|+|++++.-+|
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~-~lI~dg~I~a~IDq~~giv~~~~~~~r 365 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLS-QMILDKKFSGILDQGEGVLIVFEETPV 365 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCC---
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEEcCCCCEEEECCCcch
Confidence 99999999999999999999999999997 999999999 999999999999999999999775443
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.3e-08 Score=87.45 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhccc-------chHHHHHHHHHHhcCCCcccch-hhhcCcccccc-cCCC-chhHHHHHHHHhcCCHh
Q 031323 6 RQAELIDHFVKQASNQ-------KGAALGSVIVEATSQPSLFAFS-EILAVPNIAEF-EGTE-NSKYLDMLRLFAHGTWS 75 (161)
Q Consensus 6 ~~~~~l~~~l~~~~~~-------~~~~a~~~i~~aL~~p~i~~f~-eLl~~~~v~~L-~~s~-~~~l~~LL~iF~~G~~~ 75 (161)
+|..+-..|+..+... ....+..+++.++..++.-++. .++.-|.+... ...+ ..++.+++..|..+.+.
T Consensus 223 ~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~ 302 (429)
T 4b4t_R 223 NFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYA 302 (429)
T ss_dssp CHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHH
Confidence 4555556676665432 1245777777888877765543 36666665543 3322 34577888889999988
Q ss_pred HHhh-----ccCCC---CCCC---HHHHHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 76 DYKN-----NAGHL---PQLV---PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 76 dy~~-----~~~~~---~~L~---~~~~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
.|.. ....+ +-+. +...+.||...+..++.-.+.|+++.+|+.++++ .+++|.++. ++|..|-|.||
T Consensus 303 ~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~-~lI~~g~l~ak 380 (429)
T 4b4t_R 303 SYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG-KFIPNKQLNCV 380 (429)
T ss_dssp HHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCEE
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHcCCeEEE
Confidence 8754 12211 1232 5678999999999999999999999999999998 999999999 99999999999
Q ss_pred ecCCCCEEEEEeeecc
Q 031323 145 LDQLRRCFEVCTVLVR 160 (161)
Q Consensus 145 IDq~~~~v~V~~~~~R 160 (161)
|||++|+|+.++.-+|
T Consensus 381 ID~~~giv~~~~~d~~ 396 (429)
T 4b4t_R 381 IDRVNGIVETNRPDNK 396 (429)
T ss_dssp EETTTTEEEECC----
T ss_pred EcCCCCEEEECCCCch
Confidence 9999999998776544
No 5
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.72 E-value=4.7e-09 Score=82.51 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=76.4
Q ss_pred hHHHHHHHHhcCCHhHHhh----ccCCCCC-CCHHHHHHHHHHHHHHhhh------cCCccCHHHHHHhcCCC-----Ch
Q 031323 61 KYLDMLRLFAHGTWSDYKN----NAGHLPQ-LVPDQVLKLKQLTVLTLAE------TNKVLPYDELMEELDVT-----NV 124 (161)
Q Consensus 61 ~l~~LL~iF~~G~~~dy~~----~~~~~~~-L~~~~~~KlrlLtL~sLa~------~~~~isy~~I~~~l~i~-----~~ 124 (161)
.+.+|.+.+..||+..|++ +.+.+.. -.-..++|+|.+.+.++.. ....||+++|+.+++++ +.
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~ 161 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDI 161 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCH
Confidence 4779999999999999996 2211100 0123578899888877765 46799999999999752 48
Q ss_pred hhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 125 RELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 125 ~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
+|||.++. ++|..|.|+|+||+.++++.++..
T Consensus 162 ~evE~ila-~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 162 DEVQCILA-NLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHH-HHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHH-HHHHcCceEEEEcccccEEEECCC
Confidence 99999999 999999999999999999988764
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=5e-08 Score=84.37 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhccc--------chHHHHHHHHHHhcCCCcccchhhhcCcccccccCCCchhHHHHHHHHhcCCHhHH
Q 031323 6 RQAELIDHFVKQASNQ--------KGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDY 77 (161)
Q Consensus 6 ~~~~~l~~~l~~~~~~--------~~~~a~~~i~~aL~~p~i~~f~eLl~~~~v~~L~~s~~~~l~~LL~iF~~G~~~dy 77 (161)
+|..+=..|...++.. ...+-...+...+.+|..-....+++-+.... ..++-.++..|++.|..+.+..|
T Consensus 233 ~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~ 311 (445)
T 4b4t_P 233 EYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRW 311 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSH
T ss_pred hHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhh
Confidence 3444445555555432 12334556667777887777777876543221 11234668899999999998877
Q ss_pred hh----ccCCC---CC-----C-C---HHHHHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCc
Q 031323 78 KN----NAGHL---PQ-----L-V---PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIV 141 (161)
Q Consensus 78 ~~----~~~~~---~~-----L-~---~~~~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi 141 (161)
.. +...+ +. . . ....+.++...+..++.-.+.|+++.|++.++++ .++||.++. ++|..|.|
T Consensus 312 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls-~mI~~g~i 389 (445)
T 4b4t_P 312 PIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYIS-DLVNQGII 389 (445)
T ss_dssp HHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSS
T ss_pred HHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHCCCE
Confidence 64 22211 11 1 1 3356777778888888888999999999999998 999999999 99999999
Q ss_pred EEEecCCCCEEEEEe
Q 031323 142 RGKLDQLRRCFEVCT 156 (161)
Q Consensus 142 ~gkIDq~~~~v~V~~ 156 (161)
.|+|||++|.|+..+
T Consensus 390 ~akIDq~~giV~F~~ 404 (445)
T 4b4t_P 390 YAKVNRPAKIVNFEK 404 (445)
T ss_dssp CCEEETTTTEEEC--
T ss_pred EEEEcCCCCEEEECC
Confidence 999999999998764
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.5e-06 Score=71.18 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=79.6
Q ss_pred CchhHHHHHHHHhcCCHhHHhhcc----CCCCC---CC---HHHHHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhH
Q 031323 58 ENSKYLDMLRLFAHGTWSDYKNNA----GHLPQ---LV---PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVREL 127 (161)
Q Consensus 58 ~~~~l~~LL~iF~~G~~~dy~~~~----~~~~~---L~---~~~~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~ev 127 (161)
+..++..+...|..+++.+|.... ..+.. +. ....+.++...+..++...+.++++.|++.++++ .+++
T Consensus 295 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~ 373 (434)
T 4b4t_Q 295 GIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQV 373 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHH
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHH
Confidence 356788899999999999998621 11111 11 3346778888888999888999999999999998 9999
Q ss_pred HHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 128 EDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 128 E~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
|.++. ++|..|.+.|+|||.+|.|.+....
T Consensus 374 E~~l~-~lI~~~~i~a~id~~~g~v~~~~~~ 403 (434)
T 4b4t_Q 374 EGKLS-QMILDKIFYGVLDQGNGWLYVYETP 403 (434)
T ss_dssp HHHHH-HHHHHTSSCCEEETTTTEEECC---
T ss_pred HHHHH-HHHhCCCcceecccccCeEeeCCCc
Confidence 99999 9999999999999999999886543
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.40 E-value=8.3e-07 Score=60.65 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=51.4
Q ss_pred HHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 98 LtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
-.|..++.-...|+++.+|+.++++ .++||.++. ++|..|-+.|+|||++++|...+.
T Consensus 19 ~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls-~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 19 HNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp HHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEEEEeCCCCEEEeCCc
Confidence 3333566678999999999999999 999999999 999999999999999999987654
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.94 E-value=5.3e-06 Score=72.39 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCHhHHhh----ccCCCC-CCC-HHHHHHHHHHHHHHhhh----------cCCccCHHHHHHhcCC----
Q 031323 62 YLDMLRLFAHGTWSDYKN----NAGHLP-QLV-PDQVLKLKQLTVLTLAE----------TNKVLPYDELMEELDV---- 121 (161)
Q Consensus 62 l~~LL~iF~~G~~~dy~~----~~~~~~-~L~-~~~~~KlrlLtL~sLa~----------~~~~isy~~I~~~l~i---- 121 (161)
+..|.+....||+..|++ |...+. .=. -..+.|+|.+.+-++.. +...||++.|+.++++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 667999999999999996 222111 112 34578888775544432 2368999999999984
Q ss_pred ----------------CChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 122 ----------------TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 122 ----------------~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
.+.+|||-++. .+|+.|+|+|+||+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA-~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLV-TLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHH-HHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHH-HHHHcCCeEEEEecCCCEEEECCC
Confidence 14889999999 999999999999999999998875
No 10
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=8.4e-06 Score=72.18 Aligned_cols=94 Identities=12% Similarity=0.232 Sum_probs=69.7
Q ss_pred hhHHHHHHHHhcCCHhHHhh----ccCCC-CCCCHHHHHHHHHH----HHHHhhhcCCccCHHHHHHhcCCCChhhHHHH
Q 031323 60 SKYLDMLRLFAHGTWSDYKN----NAGHL-PQLVPDQVLKLKQL----TVLTLAETNKVLPYDELMEELDVTNVRELEDF 130 (161)
Q Consensus 60 ~~l~~LL~iF~~G~~~dy~~----~~~~~-~~L~~~~~~KlrlL----tL~sLa~~~~~isy~~I~~~l~i~~~~evE~l 130 (161)
.++++|...|..|++..|.+ |...+ .+=+-..+.|+|.- -+..+......||+++|+..+++++.+++|.+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHH
Confidence 45889999999999999996 22111 11112234444433 23334445678999999999999878899999
Q ss_pred HHHHhHhcCCcEEEecCCCCEEEE
Q 031323 131 LINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 131 vI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
|- +||..|.|+|+||+.+|.|.-
T Consensus 423 VA-kmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 423 VS-RAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HH-HHHHHTSSCCEECTTTCCEEC
T ss_pred HH-HHHHcCCceEEEecCCCEEEe
Confidence 99 999999999999999997753
No 11
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.52 E-value=0.089 Score=34.58 Aligned_cols=55 Identities=11% Similarity=0.273 Sum_probs=46.4
Q ss_pred HHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEe
Q 031323 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCT 156 (161)
Q Consensus 100 L~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~ 156 (161)
+++....++.++.+++|.++++. ..++-+-+- +....|-+.|-||...+=++|+.
T Consensus 12 Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~-~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQ-DLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHH-HHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHH-HHHHCCCeEEEEeCCCCEEEecH
Confidence 45566678999999999999999 666656566 88899999999999999998874
No 12
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=93.92 E-value=0.12 Score=40.63 Aligned_cols=74 Identities=9% Similarity=0.059 Sum_probs=59.0
Q ss_pred hhHHHHHHHHhcCCHhHHhhccCCCCCC-----CHHHHHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHH
Q 031323 60 SKYLDMLRLFAHGTWSDYKNNAGHLPQL-----VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINE 134 (161)
Q Consensus 60 ~~l~~LL~iF~~G~~~dy~~~~~~~~~L-----~~~~~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ 134 (161)
...+++-+.+..|++..|.+.....|.. -+....++|.-.+-.++.....||.+++++.|+++|.++++.++- +
T Consensus 136 ~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~-~ 214 (229)
T 4b0z_A 136 EWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE-E 214 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH-H
Confidence 3457888899999999998643333322 244578899888888888888999999999999998999999987 6
No 13
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.99 E-value=0.6 Score=30.40 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEe
Q 031323 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (161)
Q Consensus 95 lrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkI 145 (161)
.++|.++.-...+..+|+.+||+.++++ ...|...+= +....|+|.+.-
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~-~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHH-HHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEecC
Confidence 4455555544445689999999999999 899999877 888999998874
No 14
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=90.38 E-value=1.2 Score=29.45 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 94 KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
..++|.++.-...+..+++.+||+.|+++ ...|...+- +....|+|.-. ....+.-.|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~-~Le~~G~I~~~-g~~~~~W~i 69 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKE-AGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-SSSSCEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec-CCCCCeeEE
Confidence 34455555533234589999999999999 899999988 99999999643 343444443
No 15
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=87.57 E-value=1.4 Score=32.66 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHHHHhhh--cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 97 QLTVLTLAE--TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 97 lLtL~sLa~--~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
+-.|+-||. +++.+|-++||+.++++ ..-|++.+- +.-.+|+|..+
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~-~L~~aGlv~s~ 77 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIG-PLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCeEEEe
Confidence 333444443 45679999999999999 999999988 99999999865
No 16
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=87.31 E-value=2.7 Score=28.37 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=39.9
Q ss_pred CCccCHHHHHHhc-CCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 107 NKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 107 ~~~isy~~I~~~l-~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
.+..++.+|++.+ +++ ...+=..+= +....|+|+.+-+...+....-..+
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~-~Le~~GlI~r~~~~~d~r~~~y~LT 75 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLR-ELEADGVINRIVYNQVPPKVEYELS 75 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEEC
Confidence 3579999999999 998 888888766 8899999999998776654444443
No 17
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=86.99 E-value=1.5 Score=30.63 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 95 lrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
++.|..+.-..+++.+|-.+||+.++++ ...|+..+- .....|+|+.+
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~-~~~v~~il~-~L~~~Glv~~~ 59 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLS-EHYLEQLVS-PLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEec
Confidence 4444444333345789999999999999 999999888 99999998753
No 18
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=86.83 E-value=1.1 Score=32.35 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=35.8
Q ss_pred HHHHhhh--cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 99 TVLTLAE--TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 99 tL~sLa~--~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
.|+-|+. +++.+|-++||+.++++ ...|+..+- +.-.+|+|+.+
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~-~~~l~kil~-~L~~aGlv~s~ 61 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLS-DLYLEQLVG-PLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCEEEec
Confidence 3444443 34579999999999999 999999988 99999998864
No 19
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=84.49 E-value=2 Score=28.08 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=36.9
Q ss_pred HHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcE
Q 031323 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (161)
Q Consensus 97 lLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~ 142 (161)
+..|+++...++.++.++|++.++++ ...|..-+- +....|++.
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~-~Le~~G~l~ 47 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQ-QLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEE
Confidence 34456666678899999999999998 999999888 888899874
No 20
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.39 E-value=4 Score=26.33 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=35.0
Q ss_pred hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCC
Q 031323 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~ 148 (161)
..++.++..+|++.++++ ...|-..+= .....|+|...-+..
T Consensus 34 ~~~~~~s~~ela~~l~is-~~tvs~~l~-~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLS-ASATSQHLA-RMRDEGLIDSQRDAQ 75 (99)
T ss_dssp TTCCSEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSS
T ss_pred HhCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCC
Confidence 345689999999999998 888988877 888999998876543
No 21
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=84.32 E-value=1.5 Score=29.22 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 92 VLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 92 ~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
-.+.++|.++. .++ +|+.+||++++++ ...|-..+- +.-..|+|.-
T Consensus 17 ~~~~~IL~lL~--~~g--~sa~eLAk~LgiS-k~aVr~~L~-~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAIKTIG--IEG--ATAAQLTRQLNME-KREVNKALY-DLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHHS--SST--EEHHHHHHHSSSC-HHHHHHHHH-HHHHHTSSEE
T ss_pred HHHHHHHHHHH--HcC--CCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 35667777766 333 9999999999998 899999888 8889999875
No 22
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=83.84 E-value=2.4 Score=26.54 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 94 KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
+.++|.++. .+++.+|..+||+.++++ ...|...+= ..-..|+|..
T Consensus 12 ~~~IL~~L~--~~~~~~s~~eLA~~lgls-r~tv~~~l~-~L~~~G~I~~ 57 (67)
T 2heo_A 12 EQKILQVLS--DDGGPVAIFQLVKKCQVP-KKTLNQVLY-RLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHH--HHCSCEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHH--HcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEec
Confidence 444555553 345679999999999999 999999876 8888899754
No 23
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=82.79 E-value=6.2 Score=28.24 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcC-CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE--EecCCCCEEEEEee
Q 031323 94 KLKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRCFEVCTV 157 (161)
Q Consensus 94 KlrlLtL~sLa~~~-~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g--kIDq~~~~v~V~~~ 157 (161)
=+-+|-|......+ .-.|.++||+.++++ ..+|...+= ..+..|+|+- +.|..++....-+.
T Consensus 35 ~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~-~L~~KGlI~i~~~~d~~g~~~~~ydL 99 (135)
T 2v79_A 35 LILLLKIKMHLEKGSYFPTPNQLQEGMSIS-VEECTNRLR-MFIQKGFLFIEECEDQNGIKFEKYSL 99 (135)
T ss_dssp HHHHHHHHHHHTTTCCSCCHHHHHTTSSSC-HHHHHHHHH-HHHHHTSCEEEEEECTTCCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEecCCCceEEEeeH
Confidence 34455555554443 568999999999998 999999888 9999999987 66776655544443
No 24
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=82.51 E-value=5 Score=25.93 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=34.1
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecC
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
..++..+|++.++++ ...|-..+= .....|+|...-+.
T Consensus 33 ~~~s~~ela~~l~is-~~tv~~~l~-~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 33 GGMRVSEIARELDLS-ARFVRDRLK-VLLKRGFVRREIVE 70 (109)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEeec
Confidence 469999999999998 999999877 99999999988776
No 25
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=80.88 E-value=5.9 Score=26.79 Aligned_cols=49 Identities=27% Similarity=0.123 Sum_probs=39.6
Q ss_pred CccCHHHHHHhc-CCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 108 KVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 108 ~~isy~~I~~~l-~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
+.+++.+|++.+ +++ ...|=..+= +....|+|+.+-+...+....-..+
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~-~Le~~GlI~r~~~~~d~r~~~~~LT 83 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLR-EMEKDGLVHRESFNELPPRVEYTLT 83 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHH-HHHHHTSEEEEEECCSSCEEEEEEC
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEEC
Confidence 468999999999 998 888888777 8999999999998766554444433
No 26
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=80.77 E-value=2.7 Score=30.24 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=35.3
Q ss_pred HHHhhh-cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 100 VLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 100 L~sLa~-~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
|+.|+. .++.++-++||+.++++ ...|++.+- ..-..|+|+.+
T Consensus 20 L~~La~~~~~~~~~~~iA~~~~i~-~~~l~kil~-~L~~~Glv~s~ 63 (149)
T 1ylf_A 20 LSILKNNPSSLCTSDYMAESVNTN-PVVIRKIMS-YLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHhCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEc
Confidence 333443 34679999999999999 999999988 99999998854
No 27
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=80.74 E-value=3.6 Score=29.68 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=31.8
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
.+..+|+.+||+.++++ ...|-..+- +....|+|++
T Consensus 21 ~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~ 56 (162)
T 2p5v_A 21 ENGRLTNVELSERVALS-PSPCLRRLK-QLEDAGIVRQ 56 (162)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEee
Confidence 44569999999999998 999998888 9999999986
No 28
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=80.63 E-value=3.1 Score=29.80 Aligned_cols=45 Identities=4% Similarity=0.065 Sum_probs=35.6
Q ss_pred HHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 97 lLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
+..|+.||..... |-++||+.+++| ..-+++++- +.-.+|||+..
T Consensus 12 l~~L~~La~~~~~-s~~~IA~~~~i~-~~~l~kIl~-~L~~aGlv~s~ 56 (145)
T 1xd7_A 12 IHILSLISMDEKT-SSEIIADSVNTN-PVVVRRMIS-LLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHTCSCC-CHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECC
T ss_pred HHHHHHHHhCCCC-CHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEee
Confidence 3444555543234 999999999999 999999998 99999999754
No 29
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=80.47 E-value=4 Score=30.04 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=32.5
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
++.+|-++||+.++++ ..-|+..+- +.-.+|+|+.+
T Consensus 26 ~~~~s~~~IA~~~~is-~~~l~kil~-~L~~aGlv~s~ 61 (162)
T 3k69_A 26 DSKVASRELAQSLHLN-PVMIRNILS-VLHKHGYLTGT 61 (162)
T ss_dssp TSCBCHHHHHHHHTSC-GGGTHHHHH-HHHHTTSSEEE
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee
Confidence 5679999999999999 999999888 99999999764
No 30
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=80.26 E-value=2.6 Score=27.54 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHh-hhcCCccCHHHHHHhcCCCChhh-HHHHHHHHhHhcCCcE
Q 031323 96 KQLTVLTL-AETNKVLPYDELMEELDVTNVRE-LEDFLINECMYTGIVR 142 (161)
Q Consensus 96 rlLtL~sL-a~~~~~isy~~I~~~l~i~~~~e-vE~lvI~~ai~~gLi~ 142 (161)
|.+.++.. ...+..++..+|++.++++ ... |=..+= +....|+|.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is-~~t~vs~~l~-~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVS-EKTFFMGLKD-RLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCC-HHHHHTTHHH-HHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCC-chHHHHHHHH-HHHHCCCee
Confidence 33443333 3344479999999999998 888 877766 888999999
No 31
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=80.18 E-value=6.5 Score=27.68 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhc-CCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l-~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
.|.+.+-|..|. .+..+|.+|++.+ +++ ..-+=..+= +....|+|+-+-+...+....-+.
T Consensus 34 ~~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~-~Le~~GlV~r~~~~~d~r~~~y~L 95 (131)
T 1yyv_A 34 SRWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQ-ALEQDGFLNRVSYPVVPPHVEYSL 95 (131)
T ss_dssp SHHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHHTCEEEEEECSSSCEEEEEE
T ss_pred CCcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCcEEEEecCCCCCeEEEEE
Confidence 344444444454 3579999999999 698 888888777 888999999998876655444433
No 32
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=79.81 E-value=2.3 Score=28.54 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=37.9
Q ss_pred HHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 98 LtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
..|+++....+.++.++|++.++++ ...|..-+- +....|+|.=.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~-~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLE-RMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHH-HHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 3455666677899999999999998 999999888 99999988754
No 33
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=79.68 E-value=2.7 Score=30.55 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=36.8
Q ss_pred HHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE---EecCC
Q 031323 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (161)
Q Consensus 100 L~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g---kIDq~ 148 (161)
++.+-..+..+||.+||+.++++ ...|-.-+= +....|+|++ .+|..
T Consensus 8 il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~-~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 8 ILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQ-KMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeeceeeeCHH
Confidence 34444456678999999999998 888888877 8889999874 45554
No 34
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=79.65 E-value=5.5 Score=25.61 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=32.7
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecC
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
+.+++.+|++.++++ ...|-..+= .....|+|...-+.
T Consensus 29 ~~~~~~ela~~l~is-~~tvs~~l~-~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLT-PGNLDSHIR-VLERNGLVKTYKVI 66 (100)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEEC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 479999999999998 888888776 88899999977643
No 35
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=79.59 E-value=5.4 Score=27.13 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhc-CCCChhhHHHHHHHHhHhcCCcEEEec
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLD 146 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l-~i~~~~evE~lvI~~ai~~gLi~gkID 146 (161)
.|-|.+-|..|..+...++|.+|++.+ +++ ..-+=.-+= ..-..|||+-+.+
T Consensus 26 ~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~ 78 (111)
T 3df8_A 26 KKYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIK-DLIDSGLVERRSG 78 (111)
T ss_dssp STTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHH-HHHHTTSEEEEES
T ss_pred CccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHH-HHHHCCCEEEeec
Confidence 444544444555433346699999999 898 777777666 8888999998888
No 36
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=78.87 E-value=3.4 Score=29.44 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=35.3
Q ss_pred hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE---EecCC
Q 031323 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g---kIDq~ 148 (161)
..+..+|+.+||+.++++ ...|-..+= +....|+|++ .+|..
T Consensus 18 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 18 MGNARTAYAELAKQFGVS-PETIHVRVE-KMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHcCCcceEEEecCHH
Confidence 345679999999999998 999988887 9999999986 46654
No 37
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=78.76 E-value=4.2 Score=28.74 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=34.7
Q ss_pred hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE---ecCC
Q 031323 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk---IDq~ 148 (161)
..+..+|+.+||+.++++ ...|-..+= +....|+|++. +|..
T Consensus 15 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 15 KKDSRLSMRELGRKIKLS-PPSVTERVR-QLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEecccChh
Confidence 344579999999999998 999998887 99999999864 5544
No 38
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=78.33 E-value=3.7 Score=29.09 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=32.5
Q ss_pred hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
..+..+|+.+||+.++++ ...|-..+= +....|+|.+.
T Consensus 19 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 56 (151)
T 2dbb_A 19 SENSRLTYRELADILNTT-RQRIARRID-KLKKLGIIRKF 56 (151)
T ss_dssp HHCTTCCHHHHHHHTTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345679999999999998 889988877 89999999754
No 39
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=77.68 E-value=9.5 Score=25.45 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=38.7
Q ss_pred CCccCHHHHHHhcC-CCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 107 NKVLPYDELMEELD-VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 107 ~~~isy~~I~~~l~-i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
.+..+|.+|++.++ ++ ...+=..+= +....|+|+.+-+...+....-..
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~~~d~r~~~y~L 85 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELK-FLCGKGLIKKKQYPEVPPRVEYSL 85 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEE
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeeEEEE
Confidence 45799999999995 98 888888776 889999999998876655444333
No 40
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.67 E-value=3 Score=27.20 Aligned_cols=35 Identities=6% Similarity=0.206 Sum_probs=31.2
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
+...|..+|+++++++ ...|..-+- ..-..|+|+=
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~-~Le~kG~I~R 56 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLE-QLHDVGVLEK 56 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEe
Confidence 4789999999999996 888999988 9999999864
No 41
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=76.34 E-value=3.8 Score=28.93 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=36.1
Q ss_pred HHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE---EecC
Q 031323 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQ 147 (161)
Q Consensus 101 ~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g---kIDq 147 (161)
+.+-..+..+|+.+|++.++++ ...|=..+= +....|+|++ .+|.
T Consensus 9 l~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~ 56 (150)
T 2pn6_A 9 LKILQYNAKYSLDEIAREIRIP-KATLSYRIK-KLEKDGVIKGYYAYINP 56 (150)
T ss_dssp HHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCG
T ss_pred HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEeecCH
Confidence 3333445579999999999998 888888877 8999999987 4665
No 42
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=76.26 E-value=9.7 Score=24.08 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=32.0
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
..+.++..+||+.++++ ...|-..+- .....|+|...
T Consensus 11 ~~~~~s~~eLa~~lgvs-~~tv~r~L~-~L~~~GlI~~~ 47 (81)
T 2htj_A 11 RHNGGKTAEIAEALAVT-DYQARYYLL-LLEKAGMVQRS 47 (81)
T ss_dssp HSCCCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 34579999999999998 999999887 89999999853
No 43
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=75.84 E-value=8.3 Score=26.05 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=38.7
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEe
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCT 156 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~ 156 (161)
..++..+|++.++++ ...|-..+= +....|+|.-.-|...+....-.
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R~~~~~ 97 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVE-RLDKRGLIQRSADPDDGRRLLVS 97 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTCEEEEEETTEEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCeeeeE
Confidence 379999999999998 899998877 99999999998877665544333
No 44
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=75.84 E-value=5.1 Score=27.51 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=32.0
Q ss_pred cCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 110 isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
++..+|++.++++ ...|=..+= .....|+|.-+-|+.++....-..+
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~-~L~~~Glv~r~~~~~d~R~~~~~lT 98 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIK-SLVKEGMLETSKDSKDARVIFYQLT 98 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC----------CCEEC
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeEeccCCCCCceeEEEEC
Confidence 9999999999998 888988777 9999999999887766665444433
No 45
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=75.83 E-value=9.4 Score=25.77 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=39.9
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
+..++..+|++.++++ ...|-..+= +....|+|.-.-|..++....-..
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~-~L~~~glv~~~~~~~d~R~~~~~l 89 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLR-RLEESGFIEREQDPENRRRYILEV 89 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCceeEEeeE
Confidence 4678999999999998 889988776 999999999988877665444333
No 46
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=75.36 E-value=9.3 Score=26.93 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=40.4
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
..++..+|++.++++ ...|=..|= +....|+|+-+-|+..+....-..+
T Consensus 59 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~LT 107 (162)
T 3k0l_A 59 PNLSNAKLAERSFIK-PQSANKILQ-DLLANGWIEKAPDPTHGRRILVTVT 107 (162)
T ss_dssp TTCCHHHHHHHHTSC-GGGHHHHHH-HHHHTTSEEEEECCSSSCCEEEEEC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCeEecCCCCcCCeeEeEEC
Confidence 479999999999998 888888766 9999999999998877665544443
No 47
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=75.28 E-value=14 Score=24.07 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
.++++|.++ . + +..++.+|++.++++ ...|-.-+= .....|+|..+-+.....
T Consensus 24 ~r~~Il~~L--~-~-~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~~~~ 76 (102)
T 3pqk_A 24 VRLMLVCTL--V-E-GEFSVGELEQQIGIG-QPTLSQQLG-VLRESGIVETRRNIKQIF 76 (102)
T ss_dssp HHHHHHHHH--H-T-CCBCHHHHHHHHTCC-TTHHHHHHH-HHHHTTSEEEECSSSCCE
T ss_pred HHHHHHHHH--H-h-CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCCEEE
Confidence 344455544 2 2 469999999999998 778877776 888899999876654433
No 48
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=75.11 E-value=10 Score=26.46 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcC-CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCC
Q 031323 93 LKLKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~-~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~ 148 (161)
+-+-++.|......+ .-.|..+||+.++++ ..+|-..+= ..+..|+|.-+-+..
T Consensus 34 e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~-~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 34 ELVLLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVR-RLLQKGMIAIEEHTD 88 (128)
T ss_dssp HHHHHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHH-HHHHTTSSEECC---
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEEC
Confidence 334666676665533 448999999999998 999999877 999999998766643
No 49
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=75.11 E-value=11 Score=24.38 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=33.7
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCC
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~ 149 (161)
+..++.+|++.++++ ...|-.-+= .....|+|+.+-+...
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~~ 74 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLA-WLRRDGLVTTRKEAQT 74 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCCE
Confidence 689999999999998 888888777 8889999998755443
No 50
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=74.97 E-value=5.6 Score=29.25 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=33.9
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE---EecCC
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g---kIDq~ 148 (161)
.+..+|+.+||+.++++ ...|=..+= +....|+|++ .+|..
T Consensus 28 ~~~~~s~~eLA~~lglS-~~tv~~~l~-~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 28 KDARLTISELSEQLKKP-ESTIHFRIK-KLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTT
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeecccCCHH
Confidence 34569999999999998 999988887 9999999975 45543
No 51
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=74.73 E-value=8.1 Score=26.19 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=36.0
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
..++..+|++.++++ ...|-..+= +....|+|.-.-++.++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~-~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLK-LLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 469999999999998 889988776 999999999888765544
No 52
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=74.05 E-value=9.5 Score=25.35 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEec
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkID 146 (161)
.++++|..+. .+..++.+|++.++++ ...|-..+= .....|+|..+=+
T Consensus 27 ~r~~IL~~L~----~~~~~~~ela~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 27 NRIRIMELLS----VSEASVGHISHQLNLS-QSNVSHQLK-LLKSVHLVKAKRQ 74 (106)
T ss_dssp HHHHHHHHHH----HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred HHHHHHHHHH----hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 3455555543 2468999999999998 888988877 8888999988754
No 53
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=73.97 E-value=13 Score=26.41 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=35.3
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCC
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~ 150 (161)
+..+|.+|++.++++ ..-+=..+= +....|+|+-+-++..+
T Consensus 36 g~~~~~eLa~~lgis-~~tls~~L~-~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLA-KNILAARLR-NLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TCCSHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSSS
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEEecCCCC
Confidence 579999999999998 887877766 88899999999887665
No 54
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=73.85 E-value=4.1 Score=29.00 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=31.8
Q ss_pred hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
..+..+|+.+||+.++++ ...|-..+= +....|+|++
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~ 53 (151)
T 2cyy_A 17 QNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKK 53 (151)
T ss_dssp HHCTTCCHHHHHHHHCSC-HHHHHHHHH-HHHHHTSSCC
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEE
Confidence 344579999999999998 888888877 8899999976
No 55
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=73.54 E-value=13 Score=25.24 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=36.6
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
+..++..+|++.++++ ...|=..+= +....|+|.-.-|..++.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVD-KLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 5579999999999998 888888776 999999999888765544
No 56
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.43 E-value=11 Score=25.68 Aligned_cols=48 Identities=15% Similarity=0.026 Sum_probs=39.4
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
..++..+|++.++++ ...|-..+= +....|+|.-.-|..++....-..
T Consensus 46 ~~~~~~~la~~l~~s-~~tvs~~l~-~L~~~glv~r~~~~~d~r~~~~~l 93 (145)
T 2a61_A 46 GPKRPGELSVLLGVA-KSTVTGLVK-RLEADGYLTRTPDPADRRAYFLVI 93 (145)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCCceEEEEE
Confidence 469999999999998 888988766 999999999988877666544433
No 57
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=73.38 E-value=7.4 Score=26.29 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=36.3
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v 152 (161)
+..++..+|++.++++ ...|-..+= +....|+|.-.-|..++..
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~r~ 88 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQ-RMKRDGYVMTEKNPNDQRE 88 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHH-HHHHTTSEEEEECSSCTTC
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCeeeccCCCCCce
Confidence 4579999999999998 888888766 8899999998877655443
No 58
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=72.84 E-value=4.5 Score=29.82 Aligned_cols=36 Identities=8% Similarity=0.213 Sum_probs=31.6
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
.+..+|+.+||+.++++ ...|=..+= +....|+|++
T Consensus 38 ~~~~~s~~eLA~~lglS-~~tv~~rl~-~L~~~G~I~~ 73 (171)
T 2e1c_A 38 NDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKK 73 (171)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEe
Confidence 44579999999999998 888888877 8999999976
No 59
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=72.29 E-value=7.5 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=31.8
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
.+..+|+.+||+.++++ ...|=..+= +....|+|++.
T Consensus 18 ~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 54 (150)
T 2w25_A 18 ADGRATLSELATRAGLS-VSAVQSRVR-RLESRGVVQGY 54 (150)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 34579999999999998 888988877 89999999754
No 60
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=72.25 E-value=10 Score=25.63 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=37.6
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
..++..+|++.++++ ...|=..+= +....|+|.-.-|+..+....
T Consensus 47 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~~~ 91 (138)
T 1jgs_A 47 ACITPVELKKVLSVD-LGALTRMLD-RLVCKGWVERLPNPNDKRGVL 91 (138)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTCSSCEE
T ss_pred CCCCHHHHHHHHCCC-hHHHHHHHH-HHHHCCCEEecCCcccCceeE
Confidence 468999999999998 888888766 999999999988876665443
No 61
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.85 E-value=10 Score=30.26 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=69.6
Q ss_pred Ccccch-hhhcCccc-ccccCCC-chhHHHHHHHHhcCCHhHHhhc--cCCCCC-----CCHHHHHHHHHHHHHHhhhcC
Q 031323 38 SLFAFS-EILAVPNI-AEFEGTE-NSKYLDMLRLFAHGTWSDYKNN--AGHLPQ-----LVPDQVLKLKQLTVLTLAETN 107 (161)
Q Consensus 38 ~i~~f~-eLl~~~~v-~~L~~s~-~~~l~~LL~iF~~G~~~dy~~~--~~~~~~-----L~~~~~~KlrlLtL~sLa~~~ 107 (161)
++-.|. +|-.+|.. +.+++++ -..-+++-..+..|++..|.+. .+..|. +-+....++|.-.+-.++...
T Consensus 118 ~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY 197 (274)
T 4b4t_T 118 NTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSY 197 (274)
T ss_dssp CSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333454 44455543 3344443 2335778889999999998752 222333 124567899998888888888
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCC
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGI 140 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gL 140 (161)
+.+|.+.+++.|+.+|.+++.+++- + .|+
T Consensus 198 ~~i~l~~~~~~L~F~s~~e~~~F~~-~---~gW 226 (274)
T 4b4t_T 198 DFLPLSNIKALLFFNNEKETEKFAL-E---RNW 226 (274)
T ss_dssp SSCCHHHHHHHHTCCSHHHHHHHHH-H---TTC
T ss_pred hhcCHHHHHHHhCCCCHHHHHHHHH-H---cCC
Confidence 8999999999999999999999877 5 555
No 62
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.84 E-value=10 Score=25.94 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=33.1
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
+..++..+|++.++++ ...|=..+= +....|+|+-.-|+..+.
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~-~Le~~glv~r~~~~~d~R 90 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLR-ELERGGLIVRHADPQDGR 90 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCEeeCCCCCCCC
Confidence 5579999999999998 888888776 999999999887765544
No 63
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.77 E-value=9 Score=25.94 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=39.0
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
..++..+|++.++++ ...|-..+= +....|+|.-.-|...+....-..
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~~~~l 96 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLA-RLERDGIVRRWKAPKDQRRVYVNL 96 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCCeeEEEE
Confidence 359999999999998 889988777 999999999988876665444333
No 64
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=71.54 E-value=12 Score=25.37 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=38.0
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
..++..+|++.++++ ...|=..|= +....|+|+-.-|+..+....-..
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~D~R~~~~~L 93 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLR-NLERKKLIYRYVDAQDTRRKNIGL 93 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC--CCEEEEE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCCCCCCeeeeEE
Confidence 589999999999998 888888766 999999999988877665444333
No 65
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=71.16 E-value=11 Score=25.58 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecC
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
..+++|.++. .+..+..+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 19 ~R~~Il~~L~----~~~~~~~eLa~~l~is-~~tvs~hL~-~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 19 TRRAVLGRLS----RGPATVSELAKPFDMA-LPSFMKHIH-FLEDSGWIRTHKQG 67 (118)
T ss_dssp HHHHHHHHHH----TCCEEHHHHHTTCCSC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred HHHHHHHHHH----hCCCCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEEecC
Confidence 4455555554 3568999999999998 888888777 88899999987773
No 66
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=70.95 E-value=6.7 Score=27.21 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=33.7
Q ss_pred hhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 104 a~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
...+..++..+|++.++++ ...|=..|= +....|+|+-+-|+..+....-..
T Consensus 49 ~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~L 100 (150)
T 3fm5_A 49 CEQAEGVNQRGVAATMGLD-PSQIVGLVD-ELEERGLVVRTLDPSDRRNKLIAA 100 (150)
T ss_dssp HHSTTCCCSHHHHHHHTCC-HHHHHHHHH-HHHTTTSEEC-----------CEE
T ss_pred HhCCCCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeeCCccccchheeeE
Confidence 3445569999999999998 888888776 999999999888877665444333
No 67
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=70.92 E-value=6.1 Score=27.41 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=30.8
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
.+..+|+.+|++.++++ ...|=..+= +....|+|++.
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 51 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVK-ALEEKGIIEGY 51 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEecc
Confidence 34468999999999998 888887776 88889999765
No 68
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=70.84 E-value=25 Score=24.89 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=40.4
Q ss_pred HHHHHHHhhhcCCccCHHHHHHhc-CCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEE
Q 031323 96 KQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (161)
Q Consensus 96 rlLtL~sLa~~~~~isy~~I~~~l-~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~ 153 (161)
+.+-|..|. .+..+|.+|++.+ +|+ ..-+=..+= +.-..|||+=+.++......
T Consensus 28 ~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~-~Le~~GLV~R~~~~~d~r~v 82 (131)
T 4a5n_A 28 KGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLR-ELEADGIVHREVYHQVPPKV 82 (131)
T ss_dssp HHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEE
T ss_pred HHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHH-HHHHCCCEEEEecCCCCCeE
Confidence 344444454 4589999999999 998 777777766 88889999988877655433
No 69
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=70.31 E-value=12 Score=25.70 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=35.7
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
..++..+|++.++++ ...|=..|= +....|+|.-.-|...+....
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R~~~ 99 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVD-RMERNGLVARVRDEHDRRVVR 99 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC---CEE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCcceeE
Confidence 469999999999998 888988776 999999999988776555433
No 70
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=69.67 E-value=9.6 Score=25.57 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=32.9
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecC
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
+.++..+|++.++++ ...|-..+= .....|+|+.+-+.
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 74 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQ-ALKSGGLVEARREG 74 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEEEET
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeC
Confidence 578999999999998 889988877 88899999887543
No 71
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=69.61 E-value=11 Score=25.88 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.6
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEec
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkID 146 (161)
.+..++.+|++.++++ ...|-..+= .....|+|..+=+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLR-TLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEE
Confidence 4579999999999998 889988877 8889999987543
No 72
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=68.65 E-value=12 Score=25.49 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=36.4
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v 152 (161)
..++..+|++.++++ ...|=..+= +....|+|.-.-|+..+..
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~-~Le~~gli~r~~~~~d~R~ 84 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIK-RLEEQGFIYRQEDASNKKI 84 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTTC
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCce
Confidence 479999999999998 888888766 9999999999887755543
No 73
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=68.44 E-value=8.8 Score=26.36 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=36.0
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
.+..++..+|++.++++ ...|=..|= +....|+|+-.-|+..+....-..
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~D~R~~~~~L 96 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLK-KLEKKDYVVRTREEKDERNLQISL 96 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-------CEEEE
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCeEecCCCCCcceeeeeE
Confidence 35689999999999998 888988777 999999999988876665444333
No 74
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=68.42 E-value=16 Score=24.62 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=35.4
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
.++..+|++.++++ ...|=..+= +....|+|.-.-|+..+.
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQ-RMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CcCHHHHHHHHCCC-cchHHHHHH-HHHHCCCEEeeCCCcCCC
Confidence 79999999999998 888888776 999999999888765554
No 75
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=68.11 E-value=13 Score=24.55 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEec
Q 031323 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (161)
Q Consensus 94 KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkID 146 (161)
.+++|..+ . ++.++..+|++.++++ ...|-..+= .....|+|...-+
T Consensus 23 r~~IL~~L---~-~~~~~~~ela~~l~is-~~tv~~~l~-~L~~~gli~~~~~ 69 (114)
T 2oqg_A 23 RWEILTEL---G-RADQSASSLATRLPVS-RQAIAKHLN-ALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHH---H-HSCBCHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred HHHHHHHH---H-cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEec
Confidence 34455544 2 2458999999999998 888988877 8889999987655
No 76
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.58 E-value=14 Score=25.03 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=36.9
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
.+..++..+|++.++++ ...|=..+= +....|+|.-.-|+..+.
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~-~L~~~glv~r~~~~~d~R 92 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLD-GLESQGLVRRLAVAEDRR 92 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCBTTBC
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCeeecCCCcccC
Confidence 45679999999999998 888888766 999999999887765544
No 77
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=67.06 E-value=16 Score=23.61 Aligned_cols=46 Identities=4% Similarity=0.004 Sum_probs=34.4
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
+..++..+|++.++++ ...|=..+= .....|+|.-.-|.....+.+
T Consensus 28 ~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~~~~d~R~~~v~L 73 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSP-HSYVWLIIK-KFEEAKMVECELEGRTKIIRL 73 (95)
T ss_dssp TCCEEHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCcCccCCCCCCeEEEEE
Confidence 3459999999999998 888888766 889999994444443334444
No 78
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.70 E-value=7.8 Score=23.60 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=23.6
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
...||.+||+.++++ ...|...+- +|+
T Consensus 24 ~g~s~~eIA~~lgis-~~tV~~~~~-ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVT-RERIRQIEA-KAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 579999999999998 999999877 664
No 79
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=66.47 E-value=13 Score=26.48 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=35.6
Q ss_pred hhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 104 a~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
...+..++..+|++.++++ ...|=..|= +....|+|+-+-|...+....-..+
T Consensus 63 ~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 63 HQLPPDQSQIQLAKAIGIE-QPSLVRTLD-QLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp HHSCSSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC--------CEEEEC
T ss_pred HHcCCCCCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 3334569999999999998 888888766 9999999998887766654444333
No 80
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=66.43 E-value=20 Score=26.43 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhh-cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCC-cEE
Q 031323 92 VLKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGI-VRG 143 (161)
Q Consensus 92 ~~KlrlLtL~sLa~-~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gL-i~g 143 (161)
...-|...|+.+-. +++.+|..+||+.++++ ...|-.-+= ..-..|+ |.+
T Consensus 18 ~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~-~L~~~G~~I~~ 69 (187)
T 1j5y_A 18 VRQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIA-YLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHHTCCCEE
T ss_pred hHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 44556667777655 45679999999999998 877777765 6666888 764
No 81
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=66.34 E-value=12 Score=26.22 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=37.8
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
+..++..+|++.++++ ...|=..|= +....|+|.-+-|+..+....-..
T Consensus 62 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 110 (159)
T 3s2w_A 62 EDGINQESLSDYLKID-KGTTARAIQ-KLVDEGYVFRQRDEKDRRSYRVFL 110 (159)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC---CCEEEEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCeeEEEE
Confidence 3578999999999998 888888776 999999999998877665444333
No 82
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=66.28 E-value=11 Score=26.15 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=33.1
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
.+..++..+|++.++++ ...|=..+= +....|+|.-.-|...+.
T Consensus 54 ~~~~~t~~ela~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R 97 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLME-QSRMTRIVD-QMDARGLVTRVADAKDKR 97 (155)
T ss_dssp SCSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC------
T ss_pred HCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCcCC
Confidence 34579999999999998 888988776 999999999776654443
No 83
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=66.27 E-value=26 Score=24.61 Aligned_cols=57 Identities=9% Similarity=0.014 Sum_probs=44.2
Q ss_pred HHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeeec
Q 031323 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVLV 159 (161)
Q Consensus 101 ~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~~ 159 (161)
..++..+...+-.+|++.++++ ...|=..|= +....|+|.=+-|+..+....-..++
T Consensus 38 ~~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~-~Le~~GlV~R~~~~~DrR~~~l~LT~ 94 (151)
T 4aik_A 38 YNINRLPPEQSQIQLAKAIGIE-QPSLVRTLD-QLEEKGLITRHTSANDRRAKRIKLTE 94 (151)
T ss_dssp HHHHHSCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTTCEEEEECG
T ss_pred HHHHHcCCCCcHHHHHHHHCcC-HHHHHHHHH-HHHhCCCeEeecCCCCCcchhhhcCH
Confidence 3344445567889999999998 888888766 99999999999998887655555444
No 84
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=66.25 E-value=17 Score=25.25 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=35.9
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v 152 (161)
..++..+|++.++++ ...|=..+= +....|+|.-+-|...+..
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 99 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVD-SLEKRGLVVREMDPVDRRT 99 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEEECTTTSSC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCcce
Confidence 379999999999998 888888766 9999999998887655443
No 85
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=65.69 E-value=14 Score=25.15 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
+..++..+|++.++++ ...|=..+= +....|+|.-+-|+..+.
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLK-RMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3469999999999998 888888776 999999999888765444
No 86
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=65.65 E-value=18 Score=24.73 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 86 ~L~~~~~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
.+++.+..-|+ .|..+...+..++..+||+.++++ ...|=..+= .....|+|.-.
T Consensus 10 ~lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~-~Le~~Gli~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVS-HLEEKGLVKKK 64 (139)
T ss_dssp -CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred hcCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHH-HHHHCCCEEec
Confidence 35554444444 344555566789999999999998 888888776 88889999853
No 87
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=65.64 E-value=15 Score=23.81 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 94 KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
++++|.++ .+.++..+|++.++++ ...|-..+= .....|+|.-.
T Consensus 33 r~~Il~~L-----~~~~~~~eLa~~l~is-~~tv~~~L~-~L~~~Glv~~~ 76 (96)
T 1y0u_A 33 RRKILRML-----DKGRSEEEIMQTLSLS-KKQLDYHLK-VLEAGFCIERV 76 (96)
T ss_dssp HHHHHHHH-----HTTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHH-----cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 34455544 2469999999999998 888888777 88899999864
No 88
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=65.24 E-value=8.8 Score=26.66 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
+..++..+|++.++++ ...|=..|= +....|+|+-+-|+..+....-..
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~~~~~L 101 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLK-RLEQSGWVKRERQQSDKRQLIITL 101 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEC---------CEEEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeCCCCCCcceeeeeE
Confidence 4679999999999998 888888776 999999999888776665444333
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=64.42 E-value=8.5 Score=23.78 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=23.0
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
...|+.+||+.++++ ...|..++- +|+
T Consensus 29 ~~~s~~eIA~~l~is-~~tV~~~~~-ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVT-RERIRQIEN-KAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 579999999999998 999988765 554
No 90
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=64.40 E-value=7.3 Score=26.74 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=28.3
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
..++..+|++.++++ ...|=..|= +....|+|+-.-|+..+....
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~DrR~~~ 94 (142)
T 3ech_A 50 RGLNLQDLGRQMCRD-KALITRKIR-ELEGRNLVRRERNPSDQRSFQ 94 (142)
T ss_dssp TTCCHHHHHHHHC----CHHHHHHH-HHHHTTSEEC----------C
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCCeee
Confidence 479999999999998 888888776 999999999988876665443
No 91
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=64.35 E-value=22 Score=24.22 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=38.2
Q ss_pred CHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 111 sy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
+..+|++.++++ ...|=..|= .....|+|.-+-|+..+....-..+
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~LT 97 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVD-KLEAKGLVRRIRDSKDRRIVIVEIT 97 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred CHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeccCCCCCceEEEEEC
Confidence 999999999998 888888766 9999999999998877765544443
No 92
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=64.13 E-value=22 Score=22.87 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCccCHHHH----HHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 107 NKVLPYDEL----MEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 107 ~~~isy~~I----~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
+..++..+| ++.++++ ...|=..+= +....|+|.-.-|.....+.+
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~-~Le~~gli~r~~~~r~~~~~L 69 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKK-FLIQEGFVKERQERGEKRLYL 69 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHCCCEEEEecCCceEEEE
Confidence 457899999 8999998 888888766 888899999888874443433
No 93
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=64.11 E-value=16 Score=25.46 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=34.7
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
+..++..+|++.++++ ...|=..|= +....|+|+-.-|...+.
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALD-GLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 3479999999999998 888888766 999999999887664444
No 94
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=64.00 E-value=16 Score=25.59 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 96 rlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
+.|.++.... ++.++..+|++.++++ ...|=..|= +....|+|+=+-|+..+....-..+
T Consensus 39 ~vL~~L~~~~-~~~~t~~eLa~~l~~~-~~tvs~~v~-~Le~~Glv~r~~~~~DrR~~~l~LT 98 (147)
T 4b8x_A 39 EALVLLTFSK-SGELPMSKIGERLMVH-PTSVTNTVD-RLVRSGLVAKRPNPNDGRGTLATIT 98 (147)
T ss_dssp HHHHHHHTSG-GGEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC----CEEEEEC
T ss_pred HHHHHHHHCC-CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHhCCCEEEeecCCcCceeEEEEC
Confidence 3444444333 3479999999999998 888888766 9999999999999887765554444
No 95
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=63.29 E-value=15 Score=26.11 Aligned_cols=45 Identities=9% Similarity=-0.038 Sum_probs=37.3
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
..++..+|++.++++ ...|=..|= +....|+|.-+-|...+....
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~ 102 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVD-RLVGAELIDRLPHPTSRRELL 102 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEE
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeE
Confidence 369999999999998 888888766 999999999988876655433
No 96
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=63.03 E-value=20 Score=24.63 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 100 L~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
|+.+...++.++..+||+.++++ ...|=..+= .....|+|.-+
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~-~Le~~Glv~r~ 55 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVH-PSSVTKMVQ-KLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHhhcCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEe
Confidence 33444444579999999999998 888888776 88899999865
No 97
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=62.16 E-value=19 Score=23.05 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=35.0
Q ss_pred hhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCC
Q 031323 103 LAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (161)
Q Consensus 103 La~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~ 148 (161)
+...+..++..+|++.++++ ...|-..+= .....|+|...-+..
T Consensus 30 l~~~~~~~t~~ela~~l~is-~~tv~~~l~-~L~~~g~v~~~~~~~ 73 (109)
T 2d1h_A 30 MVEIEKPITSEELADIFKLS-KTTVENSLK-KLIELGLVVRTKTEG 73 (109)
T ss_dssp HHHHCSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--
T ss_pred HHHcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeecccc
Confidence 33335679999999999998 888988877 899999999876543
No 98
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=62.00 E-value=8.5 Score=26.35 Aligned_cols=42 Identities=5% Similarity=0.015 Sum_probs=33.6
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
..++..+|++.++++ ...|=..|= +....|+|+-+-|+..+.
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R 91 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVD-VLLRKELIVREISTEDRR 91 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC----CC
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCeeccCCCccCc
Confidence 579999999999998 888988776 999999999888665554
No 99
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=61.61 E-value=9.7 Score=24.51 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
+...||.+||+.++++ ...|..++- +|+
T Consensus 36 ~~~~s~~EIA~~lgis-~~tV~~~~~-ra~ 63 (87)
T 1tty_A 36 GKPKTLEEVGQYFNVT-RERIRQIEV-KAL 63 (87)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 3579999999999998 999998876 664
No 100
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=61.30 E-value=12 Score=25.59 Aligned_cols=44 Identities=2% Similarity=-0.098 Sum_probs=31.2
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v 152 (161)
...++..+|++.++++ ...|=..|= +....|+|.-.-|+..+..
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~ 95 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVK-KLEEKKYIEVNGHSEDKRT 95 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC---------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCcce
Confidence 3489999999999998 888888776 9999999998877665543
No 101
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=61.29 E-value=18 Score=24.90 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=32.8
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
+..++..+|++.++++ ...|=..|= +....|+|.-.-|...+.
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLK-RLQAAGLVTRTRAASDER 101 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCcccCC
Confidence 3569999999999998 888988776 999999999887665544
No 102
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=61.23 E-value=10 Score=26.25 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=34.1
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE--EecCCCCE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRC 151 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g--kIDq~~~~ 151 (161)
..++..+|++.++++ ...|-..|= +....|+|.- +-|+..+.
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVD-GLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEESCC--CTTCT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCcCCCCCCc
Confidence 469999999999998 888988776 9999999998 66665543
No 103
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=60.96 E-value=18 Score=25.47 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=38.6
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
+..++..+|++.++++ ...|=..|= +....|+|.-+-|+..+....-..+
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~LT 109 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLID-RLDDRGLVLRTRKPENRRVVEVALT 109 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEeecCCCCCCCeeEeEEC
Confidence 4689999999999998 788888766 9999999999998877766555444
No 104
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=60.61 E-value=17 Score=26.13 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCC
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~ 149 (161)
.++++|.++. .+..+..+|++.++++ ...|=.-+= .....|+|+.+-+...
T Consensus 59 ~R~~IL~~L~----~~~~t~~eLa~~lgls-~stvs~hL~-~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 59 TRRRLVQLLT----SGEQTVNNLAAHFPAS-RSAISQHLR-VLTEAGLVTPRKDGRF 109 (151)
T ss_dssp HHHHHHHHGG----GCCEEHHHHHTTSSSC-HHHHHHHHH-HHHHTTSEEEEEETTE
T ss_pred HHHHHHHHHH----hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCE
Confidence 4455555553 3569999999999998 888888777 8889999998765433
No 105
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=60.54 E-value=15 Score=25.30 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=35.8
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
..++..+|++.++++ ...|-..+= +....|+|.-.-|...+.
T Consensus 50 ~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 91 (155)
T 1s3j_A 50 GSLKVSEIAERMEVK-PSAVTLMAD-RLEQKNLIARTHNTKDRR 91 (155)
T ss_dssp SEEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCCc
Confidence 469999999999998 889988776 999999999887765443
No 106
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=60.53 E-value=25 Score=25.56 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=41.3
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
++.++..+|++.++++ ...|=..|= +....|+|.-.-|+..+....-..+
T Consensus 55 ~~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~LT 104 (189)
T 3nqo_A 55 EEETTLNNIARKMGTS-KQNINRLVA-NLEKNGYVDVIPSPHDKRAINVKVT 104 (189)
T ss_dssp GGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEEEEEC
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeEEEEC
Confidence 4579999999999998 888888776 9999999999998877765544443
No 107
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=60.50 E-value=23 Score=23.99 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecC
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
.++++|.++. . +..+..+|++.++++ ...|-..+= .....|+|..+-+.
T Consensus 22 ~r~~IL~~L~---~-~~~~~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 22 TRCRILVALL---D-GVCYPGQLAAHLGLT-RSNVSNHLS-CLRGCGLVVATYEG 70 (118)
T ss_dssp HHHHHHHHHH---T-TCCSTTTHHHHHSSC-HHHHHHHHH-HHTTTTSEEEEECS
T ss_pred HHHHHHHHHH---c-CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEEEC
Confidence 3455555543 2 357999999999998 888988877 88889999887553
No 108
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=60.26 E-value=9.4 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
....||++||+.++++ ...|...+- +|+
T Consensus 37 ~e~~s~~EIA~~lgiS-~~tVr~~~~-rAl 64 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 64 (99)
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 3679999999999998 888988876 664
No 109
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=59.87 E-value=12 Score=26.01 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=31.9
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v 152 (161)
.+..++..+|++.++++ ...|=..|= +....|+|.-.-|...+..
T Consensus 59 ~~~~~~~~ela~~l~i~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 103 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVT-NGNVSGLVN-RLIKDGMVVKAMSADDRRS 103 (160)
T ss_dssp CTTCEEHHHHHHHCSSC-CSCHHHHHH-HHHHHTSEEEC--------
T ss_pred cCCCCCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCCCe
Confidence 45579999999999998 888888766 8899999998776655543
No 110
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=58.70 E-value=13 Score=25.85 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=31.2
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
+..++..+|++.++++ ...|=..|= +....|+|.-+-|...+.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVA-RLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeecCCCCCC
Confidence 4579999999999998 888888776 999999999877655544
No 111
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=58.59 E-value=17 Score=24.91 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=35.5
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
..++..+|++.++++ ...|-..+= +....|+|+-.-|...+.
T Consensus 53 ~~~t~~ela~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~d~R 94 (152)
T 3bj6_A 53 PGATAPQLGAALQMK-RQYISRILQ-EVQRAGLIERRTNPEHAR 94 (152)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeeecCCccccc
Confidence 479999999999998 888988776 999999999887765443
No 112
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.87 E-value=8.7 Score=20.87 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=19.6
Q ss_pred cCHHHHHHhcCCCChhhHHHHHH
Q 031323 110 LPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 110 isy~~I~~~l~i~~~~evE~lvI 132 (161)
.|+.+||+.++++ ...|..|+=
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6999999999998 888988864
No 113
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=57.34 E-value=13 Score=23.60 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=28.2
Q ss_pred HHHhhhcCCccCHHHHHHhcC-----CCChhhHHHHHHHHhHhcCC
Q 031323 100 VLTLAETNKVLPYDELMEELD-----VTNVRELEDFLINECMYTGI 140 (161)
Q Consensus 100 L~sLa~~~~~isy~~I~~~l~-----i~~~~evE~lvI~~ai~~gL 140 (161)
|+..+...+.++|++|.+.+. ++ .+++|.++- ..-..|+
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld-~e~id~i~~-~L~~~gI 57 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFD-TNLIERIHE-ELEKHGI 57 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCC-HHHHHHHHH-HHHHTCC
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCC-HHHHHHHHH-HHHHCCC
Confidence 566676667899999999985 44 788888755 5444554
No 114
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=56.74 E-value=27 Score=27.83 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCC
Q 031323 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (161)
Q Consensus 94 KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~ 148 (161)
+.|++..+........++-++||+.++++ ...|=..+- ++-..|+|+-++...
T Consensus 6 ~~~~~~~ia~l~~~~~~~~~ela~~l~vS-~~tIrRdL~-~l~~~G~v~iri~g~ 58 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIARELGIY-RTTISRLLK-RGREQGIVTIAINYD 58 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEecCC
Confidence 34444444333445569999999999998 999999988 999999999777553
No 115
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=56.65 E-value=38 Score=23.13 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=31.9
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEec
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkID 146 (161)
+..++.+|++.++++ ...|-..+= .....|++..+-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~-~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLR-SLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 568999999999998 888888776 8888999988654
No 116
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=56.56 E-value=25 Score=23.68 Aligned_cols=51 Identities=25% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCC
Q 031323 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (161)
Q Consensus 96 rlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~ 150 (161)
+.|.++.+. ++.++..+|++.++++ ...|=..+= .....|+|+-.-|+.++
T Consensus 30 ~il~~L~~~--~~~~t~~ela~~l~~~-~stvs~~l~-~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 30 AVYAILYLS--DKPLTISDIMEELKIS-KGNVSMSLK-KLEELGFVRKVWIKGER 80 (152)
T ss_dssp HHHHHHHHC--SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTCS
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCCc
Confidence 344444322 3569999999999998 888888776 89999999988766543
No 117
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.44 E-value=10 Score=24.53 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=22.6
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
..||.+||+.++++ ...|...+- +|.
T Consensus 53 g~s~~eIA~~lgis-~~tV~~~l~-ra~ 78 (92)
T 3hug_A 53 GWSTAQIATDLGIA-EGTVKSRLH-YAV 78 (92)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 58999999999998 999998876 664
No 118
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=56.23 E-value=27 Score=26.11 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=31.4
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
+.+|+.+|++.++++ ...|-.-+= .....|+|++.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~-~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIE-KLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 469999999999998 888888777 88899999987
No 119
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=55.97 E-value=9.3 Score=26.23 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=34.9
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
.++..+|++.++++ ...|=..+= +....|+|.-+-|+..+.
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 85 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCK-TLAGQGLIEWQEGEQDRR 85 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEECCCSSCGG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCc
Confidence 49999999999998 888888776 999999999877765543
No 120
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=55.52 E-value=29 Score=27.02 Aligned_cols=44 Identities=27% Similarity=0.205 Sum_probs=36.1
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVC 155 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~ 155 (161)
..++..+||+.++++ ...|-..+= .....|+|+.. ...+.+..+
T Consensus 165 ~~~s~~eLA~~lgls-ksTv~r~L~-~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 165 KGTGITELAKMLDKS-EKTLINKIA-ELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp TCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTTEEEEC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe--CCccEEEEC
Confidence 469999999999999 999999877 99999999886 444555543
No 121
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=55.24 E-value=30 Score=22.51 Aligned_cols=25 Identities=4% Similarity=0.234 Sum_probs=21.1
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHh
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~a 135 (161)
-.|+.+||+.++++ ...|...+- ++
T Consensus 42 g~s~~eIA~~l~is-~~tV~~~l~-r~ 66 (95)
T 3c57_A 42 GLTNKQIADRMFLA-EKTVKNYVS-RL 66 (95)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 47999999999998 888888765 54
No 122
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.92 E-value=15 Score=21.84 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=21.5
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHh
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~a 135 (161)
..||.+||+.++++ ...|...+= +|
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~-ra 55 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVA-RA 55 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 48999999999998 988888765 55
No 123
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=51.07 E-value=31 Score=19.96 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.3
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHH
Q 031323 109 VLPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI 132 (161)
-.|+.+||+.++++ ...|...+=
T Consensus 13 g~s~~eIA~~l~is-~~tV~~~~~ 35 (61)
T 2jpc_A 13 GYTNHGISEKLHIS-IKTVETHRM 35 (61)
T ss_dssp SCCSHHHHHHTCSC-HHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-HHHHHHHHH
Confidence 36899999999998 777776544
No 124
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=50.44 E-value=14 Score=25.17 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=35.4
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
..++..+|++.++++ ...|-..+= +....|+|+-.-|..++.
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R 94 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLK-RMEQQGLITRKRSEEDER 94 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHH-HHHHHTSEECCBCSSCTT
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHH-HHHHCCCEEeccCCCCCC
Confidence 378999999999998 889988877 999999999887764443
No 125
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=50.12 E-value=23 Score=29.45 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 92 VLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 92 ~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
+++.....++.+...+..+|-.+|++.++++ ...|-..+= +.+..|+|...
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~-~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITR-ELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEec
Confidence 3444444556655566789999999999998 999998776 99999998753
No 126
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=50.01 E-value=21 Score=24.51 Aligned_cols=41 Identities=7% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCC
Q 031323 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGI 140 (161)
Q Consensus 96 rlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gL 140 (161)
|+++++.-... +.+|+.+.++..+|+ ..+++.|.= +...|=
T Consensus 38 rK~~VV~~v~~-g~lS~~EAa~ry~Is-~~ei~~W~r--~y~~~G 78 (101)
T 2oa4_A 38 RKIAVVRGVIY-GLITLAEAKQTYGLS-DEEFNSWVS--ALAEHG 78 (101)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHTTCSS-HHHHHHHHH--HHHCCC
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHhCCC-HHHHHHHHH--HHHHHh
Confidence 46666665544 479999999999995 999999954 555443
No 127
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=49.85 E-value=15 Score=25.73 Aligned_cols=42 Identities=7% Similarity=-0.014 Sum_probs=33.7
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
..++..+|++.++++ ...|=..|= +....|+|.-+-|+..+.
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~DrR 107 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVD-QLVDEGLAARSISDADQR 107 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC---CCC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCcccCC
Confidence 479999999999998 888888766 999999999887765554
No 128
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.48 E-value=23 Score=26.45 Aligned_cols=49 Identities=10% Similarity=-0.079 Sum_probs=35.9
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEeee
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTVL 158 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~~ 158 (161)
..++..+|++.++++ ...|=..|= .....|+|.-+-|+..+....-..+
T Consensus 61 ~~~t~~eLa~~l~i~-~stvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~LT 109 (207)
T 2fxa_A 61 NGASISEIAKFGVMH-VSTAFNFSK-KLEERGYLRFSKRLNDKRNTYVQLT 109 (207)
T ss_dssp TSEEHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEEEECC------CEEEEC
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCceEEEEEC
Confidence 369999999999998 888888766 9999999999988776665444443
No 129
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=48.18 E-value=34 Score=22.25 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.8
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHh
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~a 135 (161)
-.++.+||+.++++ ...|+..+- ++
T Consensus 44 G~s~~eIA~~L~iS-~~TV~~~~~-~i 68 (90)
T 3ulq_B 44 GFTNQEIADALHLS-KRSIEYSLT-SI 68 (90)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 37999999999998 888888765 43
No 130
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=48.15 E-value=15 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.3
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
..+||++||+.+|++ ...|...+- +|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~-rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVT-EAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 358999999999998 999999877 663
No 131
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=47.33 E-value=6.9 Score=25.93 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHhHhcCCcEEEecC
Q 031323 124 VRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 124 ~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
...||+.+| .+...|=|.|+|++
T Consensus 36 A~~VE~~Li-~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 36 VEQIELQLI-QLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHHH-HHHHCCSSCCCCCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 367999999 99999999999875
No 132
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=46.55 E-value=22 Score=27.69 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=31.9
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~ 142 (161)
+...+.++|++.++++ ..+|+.-+- +....|+|+
T Consensus 176 ~~~~t~~~la~~~~l~-~~~V~~~l~-~L~~~~~v~ 209 (232)
T 2qlz_A 176 NGRATVEELSDRLNLK-EREVREKIS-EMARFVPVK 209 (232)
T ss_dssp SSEEEHHHHHHHHTCC-HHHHHHHHH-HHTTTSCEE
T ss_pred cCCCCHHHHHHHhCcC-HHHHHHHHH-HHHhcCCeE
Confidence 5789999999999999 999999988 999999997
No 133
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=46.00 E-value=39 Score=21.31 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.8
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHh
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~a 135 (161)
-.|+.+||+.++++ ...|...+= ++
T Consensus 36 g~s~~eIA~~l~is-~~tV~~~l~-r~ 60 (82)
T 1je8_A 36 GLPNKMIARRLDIT-ESTVKVHVK-HM 60 (82)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 48999999999998 888887765 44
No 134
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=45.88 E-value=45 Score=27.26 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
++...-.++.+-..+..+|-.+|++.++++ ...|-..+= +.+..|+|+.
T Consensus 14 r~~n~~~il~~l~~~~~~sr~~la~~~~ls-~~tv~~~v~-~L~~~g~i~~ 62 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVH-EMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEEE
T ss_pred HHhHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEe
Confidence 333334455555677889999999999998 999998776 9999999875
No 135
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=44.53 E-value=7.3 Score=25.88 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHhHhcCCcEEEecC
Q 031323 124 VRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 124 ~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
...||+.+| .+...|-|.++|++
T Consensus 34 A~~VE~~Li-~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 34 AQAVETYLK-KLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHH-HHHHHTCCSCCBCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 367999999 99999999999975
No 136
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=44.53 E-value=60 Score=21.44 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=31.2
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEec
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkID 146 (161)
...++.+|++.++++ ...|=..+= .....|++.-.=+
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~-~Le~~Glv~~~~~ 80 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLR-VLRNLGLVVGDRA 80 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHH-HHHHHCSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEec
Confidence 468999999999998 888888777 8888999976543
No 137
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=44.35 E-value=39 Score=25.45 Aligned_cols=45 Identities=7% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEe
Q 031323 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (161)
Q Consensus 99 tL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkI 145 (161)
++..+...+..++-.+||+.++++ ...|=..+= +....|+|.-.=
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs-~~tvs~~l~-~Le~~GlV~r~~ 54 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVS-PPAVTEMMK-KLLAEELLIKDK 54 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEET
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEEec
Confidence 455566667889999999999998 888888877 999999997653
No 138
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=43.91 E-value=42 Score=25.65 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=35.4
Q ss_pred HHHHHhh-hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 98 LTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 98 LtL~sLa-~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
+.++.+- ..++.++..+|++.++++ ...|-.++= .....|++.-.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~-~stv~r~l~-~L~~~G~v~~~ 56 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMS-VSNAYKYMV-VLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEC
Confidence 4444433 344579999999999998 999999877 88899999864
No 139
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=43.91 E-value=45 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=32.1
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
.+..++-.+|++.++++ ...|=..+- .....|+|..+
T Consensus 30 ~g~~~s~~eLa~~lgvs-~~tV~~~L~-~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIK-VNDVRKKLN-LLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSC-HHHHHHHHH-HHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 44468999999999998 889988888 89999999875
No 140
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=43.84 E-value=35 Score=24.15 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=22.1
Q ss_pred cCHHHHHHhcCCCChhhHHHHHHHHhHhcC
Q 031323 110 LPYDELMEELDVTNVRELEDFLINECMYTG 139 (161)
Q Consensus 110 isy~~I~~~l~i~~~~evE~lvI~~ai~~g 139 (161)
.||.+|++.++++ ...|+. +- +++..|
T Consensus 76 ~syreIA~~~g~S-~aTIsR-v~-r~L~~g 102 (119)
T 3kor_A 76 YTYATIEQESGAS-TATISR-VK-RSLQWG 102 (119)
T ss_dssp CCHHHHHHHHCCC-HHHHHH-HH-HHHHSS
T ss_pred CCHHHHHHHHCCC-HHHHHH-HH-HHHhcC
Confidence 9999999999998 888887 44 666554
No 141
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=43.79 E-value=48 Score=21.35 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEEee
Q 031323 85 PQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVCTV 157 (161)
Q Consensus 85 ~~L~~~~~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~~~ 157 (161)
|.|++. +|.+.+.++.- ++.-.==.||+++|+.+..+|-.-+= .+-+.|++ ..|+...+-.|.++
T Consensus 5 ~qls~~--~ee~I~~fL~~---~Gp~~AL~IAK~LGlktAK~VNp~LY-~m~~~~lL--~~Dek~~~W~iy~~ 69 (72)
T 3eyi_A 5 PQFSQQ--REEDIYRFLKD---NGPQRALVIAQALGMRTAKDVNRDLY-RMKSRHLL--DMDEQSKAWTIYRW 69 (72)
T ss_dssp CCCSSH--HHHHHHHHHHH---HCSEEHHHHHHHTTCCSGGGTHHHHH-HHHHTTSE--EECTTTCEEEEC--
T ss_pred hhhhhh--hHHHHHHHHHH---cCCchHHHHHHHhCcchhhhcCHHHH-HHHHccCc--CCCCCCCceeEEEe
Confidence 455543 36666666662 22333347999999998889999888 88889999 55998888666554
No 142
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.49 E-value=21 Score=24.41 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=22.9
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
...||.+||+.++++ ...|...+- +|.
T Consensus 123 ~g~s~~EIA~~lgis-~~tV~~~~~-ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKN-LKSIDNTIQ-RIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 357999999999998 999988876 664
No 143
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=42.87 E-value=38 Score=22.55 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=18.0
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHH
Q 031323 109 VLPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI 132 (161)
-.++.+||+.++++ ...|...+-
T Consensus 49 G~s~~EIA~~L~iS-~~TV~~~l~ 71 (99)
T 1p4w_A 49 GFLVTEIAKKLNRS-IKTISSQKK 71 (99)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 47999999999997 777766543
No 144
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=42.33 E-value=30 Score=23.82 Aligned_cols=36 Identities=8% Similarity=-0.024 Sum_probs=31.7
Q ss_pred CCccCHHHHHHhc--CCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 107 NKVLPYDELMEEL--DVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 107 ~~~isy~~I~~~l--~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
++.+|+.+|++.+ +++ ...|-.-+= +....|+|+..
T Consensus 25 ~g~~s~~eLA~~l~~giS-~~aVs~rL~-~Le~~GLV~~~ 62 (111)
T 3b73_A 25 EGNGSPKELEDRDEIRIS-KSSVSRRLK-KLADHDLLQPL 62 (111)
T ss_dssp HSCBCHHHHHTSTTCCSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred cCCCCHHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEec
Confidence 3489999999999 998 888988888 89999999984
No 145
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=41.16 E-value=81 Score=21.34 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=35.7
Q ss_pred hhhcCCc-cCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCC
Q 031323 103 LAETNKV-LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (161)
Q Consensus 103 La~~~~~-isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~ 148 (161)
|...++. +|-.+|++.++++ ...|-..+= .....|+|.-.-+..
T Consensus 35 L~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~-~L~~~GlV~r~~~~~ 79 (123)
T 3r0a_A 35 FLNEPDRWIDTDALSKSLKLD-VSTVQRSVK-KLHEKEILQRSQQNL 79 (123)
T ss_dssp HHHSTTCCEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEC
T ss_pred HHHCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeeCCcc
Confidence 3445555 9999999999998 999999877 899999998765443
No 146
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=40.64 E-value=22 Score=24.43 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=30.9
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE--ecCCCCEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK--LDQLRRCF 152 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk--IDq~~~~v 152 (161)
+..++..+|++.++++ ...|=..|= .....|+|.-+ -|+..+..
T Consensus 49 ~~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 49 IEALTVGQITEKQGVN-KAAVSRRVK-KLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HSCBCHHHHHHHHCSC-SSHHHHHHH-HHHHTTSEEC-----------
T ss_pred cCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCCCe
Confidence 4579999999999998 888888776 99999999973 36655543
No 147
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=40.57 E-value=22 Score=20.30 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=18.3
Q ss_pred cCHHHHHHhcCCCChhhHHHHH
Q 031323 110 LPYDELMEELDVTNVRELEDFL 131 (161)
Q Consensus 110 isy~~I~~~l~i~~~~evE~lv 131 (161)
.|+.+||+.++++ ...|-.++
T Consensus 32 ~s~~eIA~~lgis-~~TV~~~l 52 (55)
T 2x48_A 32 YTVQQIANALGVS-ERKVRRYL 52 (55)
T ss_dssp CCHHHHHHHHTSC-HHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHH
Confidence 6999999999998 88887764
No 148
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=40.54 E-value=78 Score=23.75 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecC
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
..+++|.++. .+..++.+|++.++++ ...|=.-+= .....|+|...-+.
T Consensus 16 ~rl~IL~~L~----~~~~s~~eLa~~l~is-~stvs~hLk-~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 16 TRRRILFLLT----KRPYFVSELSRELGVG-QKAVLEHLR-ILEEAGLIESRVEK 64 (202)
T ss_dssp HHHHHHHHHH----HSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC
T ss_pred HHHHHHHHHH----hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEeec
Confidence 3445555542 2468999999999998 888888777 88899999998774
No 149
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=39.77 E-value=26 Score=24.96 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.4
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
...||++||+.++++ ...|...+- +|.
T Consensus 155 ~g~s~~EIA~~lgis-~~tV~~~l~-ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCP-VGTVRSRIF-RAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 458999999999998 999998877 664
No 150
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=39.52 E-value=25 Score=23.87 Aligned_cols=45 Identities=7% Similarity=-0.000 Sum_probs=36.9
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
..++..+|++.++++ ...|=..|= +....|+|.-+-|+..+....
T Consensus 52 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~ 96 (127)
T 2frh_A 52 KEYYLKDIINHLNYK-QPQVVKAVK-ILSQEDYFDKKRNEHDERTVL 96 (127)
T ss_dssp SEEEHHHHHHHSSSH-HHHHHHHHH-HHHHTTSSCCBCCSSSSCCCE
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCCeeE
Confidence 679999999999998 888888766 899999999877776655433
No 151
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.46 E-value=66 Score=19.83 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=30.2
Q ss_pred CccCHHHHHHhc-----CCCChhhHHHHHHHHhHhcCCcEEEe
Q 031323 108 KVLPYDELMEEL-----DVTNVRELEDFLINECMYTGIVRGKL 145 (161)
Q Consensus 108 ~~isy~~I~~~l-----~i~~~~evE~lvI~~ai~~gLi~gkI 145 (161)
+.++-++|++.+ +++ ...|=..+= .....|+|.-.-
T Consensus 32 ~~~s~~el~~~l~~~~~~is-~~TVyR~L~-~L~~~Glv~~~~ 72 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIG-LATVYRVLN-QFDDAGIVTRHN 72 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCC-HHHHHHHHH-HHHHHTSEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCC-HhhHHHHHH-HHHHCCCeEEEe
Confidence 689999999999 887 888888776 888899998543
No 152
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=39.37 E-value=65 Score=21.14 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=35.2
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecC--CCCEEEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ--LRRCFEV 154 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq--~~~~v~V 154 (161)
+.-|+-.+|++.++++ ...|-..+= .....|+|+-.=+. .++.+++
T Consensus 34 ~~gi~qkeLa~~~~l~-~~tvt~iLk-~LE~kglIkr~~~~~~~~rKvy~ 81 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLP-LTEINKILK-NLESKKLIKAVKSVAASKKKVYM 81 (91)
T ss_dssp TTCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEECCSSCSSCCEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCcEEEE
Confidence 4579999999999998 888988776 89999999844333 3444443
No 153
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=39.16 E-value=80 Score=20.67 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=29.5
Q ss_pred cCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 110 isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
++..+||..++++ ...+-..+= .....|+|+-.
T Consensus 21 ~~~t~La~~~~ls-~~~~~~~l~-~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLS-YALTGRYIK-MLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 9999999999998 888888766 88899999876
No 154
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=38.79 E-value=30 Score=29.73 Aligned_cols=47 Identities=6% Similarity=0.016 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 93 ~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
..+.+|.++.+|-+ +-|.-+||+.++++ .+++...+- .....|||++
T Consensus 388 ~~~~~l~~L~~~dG--~~slldia~~~~~~-~~~~~~~~~-~l~~~~l~~~ 434 (435)
T 3k9t_A 388 DEFAMFWVLNMSDG--KNSLLDIAYKSGME-FRRIKYAAD-ALYRVELLKL 434 (435)
T ss_dssp CHHHHHHHHHHCEE--EEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTCEEE
T ss_pred HHHHHHHHHHhccC--CccHHHHHHHhCcC-HHHHHHHHH-HHHHccCccc
Confidence 45678888888754 57789999999999 999999887 8899999984
No 155
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.03 E-value=35 Score=20.80 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.9
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHh
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINEC 135 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~a 135 (161)
.-.|+.+||+.++++ ...|...+- ++
T Consensus 30 ~g~s~~eIA~~l~is-~~tV~~~~~-r~ 55 (79)
T 1x3u_A 30 AGLPNKSIAYDLDIS-PRTVEVHRA-NV 55 (79)
T ss_dssp TTCCHHHHHHHTTSC-HHHHHHHHH-HH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 358999999999998 888887655 44
No 156
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=37.91 E-value=40 Score=18.27 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred cCHHHHHHhcCCCChhhHHHHH
Q 031323 110 LPYDELMEELDVTNVRELEDFL 131 (161)
Q Consensus 110 isy~~I~~~l~i~~~~evE~lv 131 (161)
.|..+||+.++++ ...|-.|+
T Consensus 22 ~s~~~ia~~lgvs-~~Tv~r~l 42 (52)
T 1jko_C 22 HPRQQLAIIFGIG-VSTLYRYF 42 (52)
T ss_dssp CCHHHHHHTTSCC-HHHHHHHS
T ss_pred CCHHHHHHHHCCC-HHHHHHHH
Confidence 8999999999998 77777764
No 157
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.45 E-value=18 Score=24.80 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=25.9
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~ 153 (161)
..++..+|++.++++ ...|=..|= +....|+|+-.-|+..+...
T Consensus 56 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~DrR~~ 99 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRR-GASITSMLQ-GLEKKGYIERRIPENNARQK 99 (148)
T ss_dssp TCCCHHHHHHC-------CHHHHHH-HHHHTTSBCCC--------C
T ss_pred CCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeeCCCCCchhh
Confidence 679999999999998 788877766 89999999988777665543
No 158
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.94 E-value=38 Score=27.62 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=43.9
Q ss_pred CCHhHHhhccCC--CCCCC----HHHHHHHHHHHHHHhhhc----CCccCHHHHHHhcCCCChhhHHHHHH
Q 031323 72 GTWSDYKNNAGH--LPQLV----PDQVLKLKQLTVLTLAET----NKVLPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 72 G~~~dy~~~~~~--~~~L~----~~~~~KlrlLtL~sLa~~----~~~isy~~I~~~l~i~~~~evE~lvI 132 (161)
|++..|-..-.. .|-+. +....++|.-+|-.++.. ...+|.+.+++.|+.++.+++++|+-
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 667666653222 23232 223678998888888763 36899999999999998999999865
No 159
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.75 E-value=66 Score=19.04 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.1
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHH
Q 031323 109 VLPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI 132 (161)
..|+.+||+.++++ ...|...+=
T Consensus 26 g~s~~eIA~~l~is-~~tV~~~~~ 48 (74)
T 1fse_A 26 DKTTKEIASELFIS-EKTVRNHIS 48 (74)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH
Confidence 35999999999997 777766544
No 160
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=36.44 E-value=1.4e+02 Score=22.85 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=64.0
Q ss_pred chHHHHHHHHHHhc-CCCcccchh-hhcCccccccc-CCCchhHHHHHHHHhcCCHhHHhhccCCCCCCC---HHHHHHH
Q 031323 22 KGAALGSVIVEATS-QPSLFAFSE-ILAVPNIAEFE-GTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLV---PDQVLKL 95 (161)
Q Consensus 22 ~~~~a~~~i~~aL~-~p~i~~f~e-Ll~~~~v~~L~-~s~~~~l~~LL~iF~~G~~~dy~~~~~~~~~L~---~~~~~Kl 95 (161)
+...+......+|. .|. =.|.- +--+|. .++ +.+-..+..|=+.+-.|++..|.+.-..-+++. ..-...+
T Consensus 62 ~~~ii~~iLlk~L~~~p~-~DF~~~l~LIp~--~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsI 138 (226)
T 1rz4_A 62 QTTVTAQILLKALTNLPH-TDFTLCKCMIDQ--AHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSV 138 (226)
T ss_dssp CHHHHHHHHHHHHHTTTS-THHHHHHHTSCH--HHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHH
T ss_pred chhHHHHHHHHHHHcCCH-HHHHHHHHhCCh--hhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHH
Confidence 34445555555553 343 34432 111232 222 234566788888999999999986322222221 1123444
Q ss_pred H--HHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCc
Q 031323 96 K--QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIV 141 (161)
Q Consensus 96 r--lLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi 141 (161)
| ...+++. ..+.|+-+.+++-|+..+.++++.|+- + .|+.
T Consensus 139 R~~I~~~i~~--aY~sI~~~~la~lLg~~s~~el~~fi~-~---~GW~ 180 (226)
T 1rz4_A 139 RKFICHVVGI--TYQHIDRWLLAEMLGDLSDSQLKVWMS-K---YGWS 180 (226)
T ss_dssp HHHHHHHHHH--HCSEECHHHHHHHTTSCCHHHHHHHHH-H---HTCE
T ss_pred HHHHHHHHHH--HHhhCCHHHHHHHHcCCCHHHHHHHHH-H---CCCE
Confidence 4 3344443 467899999999996434899999987 5 4774
No 161
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=35.79 E-value=55 Score=24.91 Aligned_cols=45 Identities=4% Similarity=0.040 Sum_probs=35.8
Q ss_pred HHHHHHhhh-cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 97 QLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 97 lLtL~sLa~-~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
-|.++..-. .++.++..+|++.++++ ...|=.++- .....|++.-
T Consensus 8 ~l~iL~~l~~~~~~~s~~ela~~~gl~-~stv~r~l~-~L~~~G~v~~ 53 (241)
T 2xrn_A 8 AASIMRALGSHPHGLSLAAIAQLVGLP-RSTVQRIIN-ALEEEFLVEA 53 (241)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHTTSC-HHHHHHHHH-HHHTTTSEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE
Confidence 444554433 44579999999999998 999999888 8889999976
No 162
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.66 E-value=28 Score=22.34 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=20.4
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHh
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~a 135 (161)
-.|+.+||+.++++ ...|...+- ++
T Consensus 44 g~s~~eIA~~l~is-~~tV~~~l~-r~ 68 (91)
T 2rnj_A 44 GYSNQEIASASHIT-IKTVKTHVS-NI 68 (91)
T ss_dssp TCCTTHHHHHHTCC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 48999999999998 888887655 44
No 163
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=35.47 E-value=45 Score=30.31 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcE
Q 031323 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (161)
Q Consensus 98 LtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~ 142 (161)
++++-+-.+...+||++|++.++++ ..++..-+- ..+..|++.
T Consensus 592 a~iLllFn~~~~~t~~ei~~~t~i~-~~~l~r~L~-~l~k~~iL~ 634 (760)
T 1ldj_A 592 MAILLQYNTEDAYTVQQLTDSTQIK-MDILAQVLQ-ILLKSKLLV 634 (760)
T ss_dssp HHHHHGGGSSSEEEHHHHHHHTCCC-HHHHHHHHH-HHHHTTTEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcce
Confidence 3444444456789999999999999 888888777 777888885
No 164
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=34.89 E-value=58 Score=28.67 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=37.2
Q ss_pred HHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHh-----cCCcEEE
Q 031323 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMY-----TGIVRGK 144 (161)
Q Consensus 97 lLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~-----~gLi~gk 144 (161)
.+.++.+...+..+|-.++++.++++ ..++...+= +... .|+|++.
T Consensus 432 ~~~iL~~l~~~~~it~~~la~~l~~s-~~~~~~~L~-~L~~~~~~~~glie~~ 482 (583)
T 3lmm_A 432 IAIVLYLLFQRPFITIDVVARGLQSG-KEAARNALE-AARQTTVAGAPLIIAH 482 (583)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTSC-HHHHHHHHH-HHHTCEETTEESEEEE
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCcC-HHHHHHHHH-HHHhhhccccceEEEe
Confidence 34566666677899999999999998 999998776 7776 6788874
No 165
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=34.25 E-value=45 Score=21.57 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=31.4
Q ss_pred cCCccCHHHHHHhcCCCChh-hHHHHHHHHhHhcCCcEE
Q 031323 106 TNKVLPYDELMEELDVTNVR-ELEDFLINECMYTGIVRG 143 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~-evE~lvI~~ai~~gLi~g 143 (161)
..+..+=.+||+.|+|+ .. .|-.-+- ..-..|+|.-
T Consensus 22 ~~g~~ta~eiA~~Lgit-~~~aVr~hL~-~Le~eGlV~~ 58 (79)
T 1xmk_A 22 NVSDSSALNLAKNIGLT-KARDINAVLI-DMERQGDVYR 58 (79)
T ss_dssp HTCCEEHHHHHHHHCGG-GHHHHHHHHH-HHHHTTSEEE
T ss_pred HcCCcCHHHHHHHcCCC-cHHHHHHHHH-HHHHCCCEEe
Confidence 45678999999999998 77 9999888 8889999983
No 166
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=33.50 E-value=72 Score=18.46 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhcCCccCHHHHHHhc-----CCCChhhHHHHHHHHhHhcCCc
Q 031323 95 LKQLTVLTLAETNKVLPYDELMEEL-----DVTNVRELEDFLINECMYTGIV 141 (161)
Q Consensus 95 lrlLtL~sLa~~~~~isy~~I~~~l-----~i~~~~evE~lvI~~ai~~gLi 141 (161)
-|...+..+...++.+|-++|++.+ +++ ...|-.-+= ..|++
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs-~~Tv~R~L~----~lg~v 51 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVT-QATVSRDIK----ELHLV 51 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCC-HHHHHHHHH----HHTCE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcC-HHHHHHHHH----HcCCE
Confidence 3444455555566789999999999 998 888877543 35777
No 167
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=33.13 E-value=81 Score=21.75 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=34.1
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEE
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVC 155 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~ 155 (161)
.++.++..+|++.++++ ...|=..+= .....|+|.-+=+ +.+.++
T Consensus 51 ~~~~~~~~~la~~l~vs-~~tvs~~l~-~Le~~Glv~r~~~---~~~~lT 95 (155)
T 2h09_A 51 EVGEARQVDMAARLGVS-QPTVAKMLK-RLATMGLIEMIPW---RGVFLT 95 (155)
T ss_dssp HHSCCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTCEEEETT---TEEEEC
T ss_pred hCCCcCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEecC---CceEEC
Confidence 34568999999999998 888888766 8888999875522 445554
No 168
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=33.08 E-value=63 Score=20.00 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=32.1
Q ss_pred hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
+.++.+-.+.+++.++++ .++|=..+= +.-..|||+-
T Consensus 21 ~sGGildI~~~a~kygV~-kdeV~~~Lr-rLe~KGLI~l 57 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVE-KQEVVKLLE-ALKNKGLIAV 57 (59)
T ss_dssp HTTSEEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HcCCEEeHHHHHHHhCCC-HHHHHHHHH-HHHHCCCeec
Confidence 467899999999999999 999998887 8888999863
No 169
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=32.84 E-value=61 Score=20.31 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHH---HHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCc
Q 031323 84 LPQLVPDQVLKLKQ---LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIV 141 (161)
Q Consensus 84 ~~~L~~~~~~Klrl---LtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi 141 (161)
+|.+++....||.- -|+-+++ ..+.+++..-.+++ ...++.+++ .|-..+.+
T Consensus 12 L~Gi~~~~~~kL~e~Gi~TvedlA----~~~~~eL~~i~gis-e~kA~~ii~-aAr~~~w~ 66 (70)
T 1wcn_A 12 LEGVDRDLAFKLAARGVCTLEDLA----EQGIDDLADIEGLT-DEKAGALIM-AARNICWF 66 (70)
T ss_dssp STTCCHHHHHHHHTTTCCSHHHHH----TSCHHHHHTSSSCC-HHHHHHHHH-HHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCCCcHHHHH----cCCHHHHHHccCCC-HHHHHHHHH-HHHHccCc
Confidence 45566777777763 4455555 45778888888998 999999888 66332554
No 170
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.47 E-value=44 Score=22.62 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.2
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHh
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~a 135 (161)
..||.+||+.++++ ...|...+= +|
T Consensus 41 g~s~~EIA~~lgiS-~~tV~~~l~-ra 65 (113)
T 1xsv_A 41 DYSLSEIADTFNVS-RQAVYDNIR-RT 65 (113)
T ss_dssp CCCHHHHHHHTTCC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 58999999999998 888887765 54
No 171
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=32.34 E-value=14 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHhHhcCCcEEEecC
Q 031323 124 VRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 124 ~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
...||+.+| .+...|=|.++|++
T Consensus 66 A~~VE~~LI-~lAq~Gqi~~kIte 88 (118)
T 2cru_A 66 TKAVENYLI-QMARYGQLSEKVSE 88 (118)
T ss_dssp HHHHHHHHH-HHHHHTCCCSCBCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 468999999 99999999999974
No 172
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=32.05 E-value=28 Score=24.93 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=30.0
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
.++..+|++.++++ ...|=..|= +....|+|+-.-|...+.
T Consensus 86 ~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR 126 (181)
T 2fbk_A 86 GLRPTELSALAAIS-GPSTSNRIV-RLLEKGLIERREDERDRR 126 (181)
T ss_dssp CBCHHHHHHHCSCC-SGGGSSHHH-HHHHHTSEECCC------
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCEEecCCCCCCC
Confidence 49999999999998 777777665 888899999877665544
No 173
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=31.87 E-value=73 Score=21.24 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=22.2
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHH
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI 132 (161)
.+.+|+.++|+..+|+ ..++..|.=
T Consensus 47 ~g~~s~~e~arry~Is-~s~i~~W~r 71 (95)
T 2jrt_A 47 HGLITEREALDRYSLS-EEEFALWRS 71 (95)
T ss_dssp TTSSCHHHHHHHTTCC-HHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCC-HHHHHHHHH
Confidence 4579999999999996 999999965
No 174
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=31.68 E-value=78 Score=25.33 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=31.3
Q ss_pred HHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcE
Q 031323 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (161)
Q Consensus 100 L~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~ 142 (161)
++.+-..++.+|.++||+.++++ ...|-.-+- ..-..|++.
T Consensus 10 Il~~L~~~~~~s~~eLa~~l~vS-~~ti~r~l~-~L~~~G~~i 50 (321)
T 1bia_A 10 LIALLANGEFHSGEQLGETLGMS-RAAINKHIQ-TLRDWGVDV 50 (321)
T ss_dssp HHHHHTTSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHTTCCC
T ss_pred HHHHHHcCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHhCCCcE
Confidence 33433467789999999999998 888887766 666678764
No 175
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=31.22 E-value=49 Score=25.59 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=41.7
Q ss_pred HHHHHHHhhhc-CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 96 KQLTVLTLAET-NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 96 rlLtL~sLa~~-~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
|-|.++.+-.. +..++..+|++.++++ ...+=.++- .....|++.- |...+...+
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~-ksT~~RlL~-tL~~~G~v~~--~~~~~~Y~l 62 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMN-KATVYRLMS-ELQEAGFVEQ--VEGARSYRL 62 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE--CSSSSEEEE
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE--cCCCCcEEc
Confidence 44566665543 5789999999999999 999999888 9999999974 444455443
No 176
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=30.50 E-value=15 Score=25.89 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHhHhcCCcEEEecC
Q 031323 124 VRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 124 ~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
...||+.+| .+...|-|.++|++
T Consensus 69 A~~VE~~li-~laq~Gql~~ki~e 91 (116)
T 2hvu_A 69 AQAVETYLK-KLIATNNVTHKITE 91 (116)
T ss_dssp HHHHHHHHH-HHHHHSCCSSCBCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 467999999 99999999999985
No 177
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=30.35 E-value=1.2e+02 Score=22.10 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=31.8
Q ss_pred hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
..+...|+.+||++++++ ...|-..+- ..-..|+|...
T Consensus 20 ~~g~~~s~~eia~~lgl~-~~tv~~~l~-~Le~~G~i~~~ 57 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRIT-PRGALLHLI-ALEKKGYIERK 57 (196)
T ss_dssp HHSSCCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECC
T ss_pred HhCCCCCHHHHHHHcCCC-cHHHHHHHH-HHHHCCCEEec
Confidence 356789999999999999 557988877 88889998754
No 178
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=30.34 E-value=96 Score=24.81 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=34.9
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVC 155 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~ 155 (161)
++.+|+++||+.++++ ..-+..|+= -+...|+++-. .+++..+
T Consensus 48 ~~~~t~~eLA~~~g~~-~~~l~rlLr-~l~~~g~l~~~----~~~y~~t 90 (363)
T 3dp7_A 48 REGYTLQEISGRTGLT-RYAAQVLLE-ASLTIGTILLE----EDRYVLA 90 (363)
T ss_dssp TTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEE----TTEEEEC
T ss_pred CCCCCHHHHHHHhCcC-HHHHHHHHH-HHhhCCCeEec----CCEEecc
Confidence 4689999999999998 999999887 88999999652 4555443
No 179
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=30.17 E-value=17 Score=26.07 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHhHhcCCcEEEecC
Q 031323 124 VRELEDFLINECMYTGIVRGKLDQ 147 (161)
Q Consensus 124 ~~evE~lvI~~ai~~gLi~gkIDq 147 (161)
...||+.+| .+...|-|.|||++
T Consensus 69 A~~VE~~Li-~lAq~Gql~~kVsE 91 (127)
T 2jxn_A 69 AQAVETYLK-KLIATNNVTHKITE 91 (127)
T ss_dssp HHHHHHHHH-HHHHHSCCCSCBCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 468999999 99999999999875
No 180
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=30.07 E-value=49 Score=22.50 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.9
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
..||.+||+.++++ ...|..++= +|.
T Consensus 38 g~s~~EIA~~lgiS-~~tV~~~l~-ra~ 63 (113)
T 1s7o_A 38 DYSLAEIADEFGVS-RQAVYDNIK-RTE 63 (113)
T ss_dssp CCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 48999999999998 888888766 553
No 181
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=29.45 E-value=64 Score=25.06 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=29.6
Q ss_pred cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCC
Q 031323 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (161)
Q Consensus 106 ~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~ 150 (161)
.++.++.+++|+.++++ .++|+..+= ++ +.+ .+|+..+
T Consensus 33 ~Grpv~~~~LA~~~g~~-~~~v~~~L~-~l---~~~--~~D~~G~ 70 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWP-AERVAAVLE-QA---TST--EYDKDGN 70 (220)
T ss_dssp TTSCBCHHHHHHHHTCC-HHHHHHHHH-HC---TTC--EECTTSC
T ss_pred cCCCCCHHHHHHHhCcC-HHHHHHHHH-hC---CcE--EECCCCC
Confidence 89999999999999998 999999765 43 222 3676544
No 182
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=29.24 E-value=76 Score=24.39 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHHHHhh-hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 96 KQLTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 96 rlLtL~sLa-~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
|-|.++.+- ..++.++..+|++.++++ ...+=.++= .....|++.-
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~~gl~-kstv~r~l~-tL~~~G~v~~ 70 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGTKLP-KTTVVRLVA-TMCARSVLTS 70 (260)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE
Confidence 345555543 345689999999999998 899988877 8888999976
No 183
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=28.04 E-value=88 Score=23.93 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=36.2
Q ss_pred HHHHHHhh-hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 97 QLTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 97 lLtL~sLa-~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
-|.++... ..++.++..+|++.++++ ...|-.++= .....|++.-.
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~-~stv~r~l~-~L~~~G~v~~~ 62 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLS-RPAVRRILL-TLQKLGYVAGS 62 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeC
Confidence 34445433 345689999999999998 999999887 88889999863
No 184
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=27.55 E-value=73 Score=20.20 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=19.8
Q ss_pred cCHHHHHHhcCCCChhhHHHHHH
Q 031323 110 LPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 110 isy~~I~~~l~i~~~~evE~lvI 132 (161)
.|+.+||+.++|+ ...|-.|+=
T Consensus 39 ~s~~~iA~~~gIs-~sTl~rW~k 60 (87)
T 2elh_A 39 ESKASVARDIGVP-ESTLRGWCK 60 (87)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHH
Confidence 7999999999997 999999974
No 185
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=27.37 E-value=1.4e+02 Score=20.46 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=24.5
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCC
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGI 140 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gL 140 (161)
+-.|.++||+.-+++ ...++.-+. +++..|-
T Consensus 31 ~G~sleeIA~~R~L~-~~TI~~Hl~-~~v~~G~ 61 (122)
T 3iuo_A 31 RKVALDDIAVSHGLD-FPELLSEVE-TIVYSGT 61 (122)
T ss_dssp TTCCHHHHHHHTTCC-HHHHHHHHH-HHHHTTC
T ss_pred cCCCHHHHHHHcCCC-HHHHHHHHH-HHHHcCC
Confidence 457888888888887 888888888 8877773
No 186
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=27.19 E-value=1.1e+02 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=31.7
Q ss_pred hcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
...+.+|.++||+.++++ ..-++.|+= -+...|+++-.
T Consensus 39 ~~~~p~t~~eLA~~~g~~-~~~l~rlLr-~L~~~gll~~~ 76 (353)
T 4a6d_A 39 EAPGPLDVAAVAAGVRAS-AHGTELLLD-ICVSLKLLKVE 76 (353)
T ss_dssp HSSSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred cCCCCCCHHHHHHhhCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 345789999999999998 899999876 77788998643
No 187
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=26.75 E-value=78 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=34.8
Q ss_pred HHHHHHHhhh-cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 96 KQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 96 rlLtL~sLa~-~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
|-|.++++-. ..+.++..+|++.++++ ...+=.++- .....|++.-
T Consensus 31 Ral~IL~~l~~~~~~ltl~eia~~lgl~-ksTv~RlL~-tL~~~G~v~~ 77 (275)
T 3mq0_A 31 RAVRILDLVAGSPRDLTAAELTRFLDLP-KSSAHGLLA-VMTELDLLAR 77 (275)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCC---CHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE
Confidence 4455555443 45679999999999999 889999888 8899999973
No 188
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=26.32 E-value=44 Score=20.81 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCChhhHHHHHHH
Q 031323 112 YDELMEELDVTNVRELEDFLIN 133 (161)
Q Consensus 112 y~~I~~~l~i~~~~evE~lvI~ 133 (161)
-.+||+.|+++ ..+|+.|+=|
T Consensus 31 r~~LA~~l~Lt-erQVkvWFqN 51 (64)
T 1x2m_A 31 LEGLSKQLDWD-VRSIQRWFRQ 51 (64)
T ss_dssp HHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHhCCC-HHHHHHHHHH
Confidence 46789999998 9999999753
No 189
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=26.28 E-value=80 Score=24.35 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=36.3
Q ss_pred HHHHHHHhhh-cCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 96 KQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 96 rlLtL~sLa~-~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
|-|.++.+-. ..+.++..+|++.++++ ...|-.++= .....|++.-
T Consensus 22 r~l~iL~~l~~~~~~~~~~eia~~~gl~-~stv~r~l~-tL~~~G~v~~ 68 (265)
T 2ia2_A 22 RGLAVIRCFDHRNQRRTLSDVARATDLT-RATARRFLL-TLVELGYVAT 68 (265)
T ss_dssp HHHHHHHTCCSSCSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 3455555433 45689999999999999 999999887 8888999976
No 190
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.05 E-value=58 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=22.7
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
...|+.+||+.+|++ ...|...+= +|.
T Consensus 202 ~g~s~~EIA~~lgis-~~~V~~~~~-ra~ 228 (239)
T 1rp3_A 202 EELPAKEVAKILETS-VSRVSQLKA-KAL 228 (239)
T ss_dssp SCCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHhCCC-HHHHHHHHH-HHH
Confidence 468999999999998 999988765 553
No 191
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.51 E-value=82 Score=20.37 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhhcCCcc-CHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 90 DQVLKLKQLTVLTLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 90 ~~~~KlrlLtL~sLa~~~~~i-sy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
.....++..-+......+..+ |..+|++.++++ ..-|-.-+- ..-..|+|..+
T Consensus 15 ~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vS-r~tvr~al~-~L~~~Gli~~~ 68 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPGDTLPSVADIRAQFGVA-AKTVSRALA-VLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSC-TTHHHHHTT-TTTTSSCCEEE
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 334445433332233345566 899999999998 888888777 78889999753
No 192
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=24.86 E-value=1.1e+02 Score=21.59 Aligned_cols=66 Identities=15% Similarity=0.369 Sum_probs=44.0
Q ss_pred HhHHhhccCCCCCCCHH-HHHHHHHHH------HHHhhhcCCccCHHH-HHHhcCCCChhhHHHHHHHHhHhcCCc
Q 031323 74 WSDYKNNAGHLPQLVPD-QVLKLKQLT------VLTLAETNKVLPYDE-LMEELDVTNVRELEDFLINECMYTGIV 141 (161)
Q Consensus 74 ~~dy~~~~~~~~~L~~~-~~~KlrlLt------L~sLa~~~~~isy~~-I~~~l~i~~~~evE~lvI~~ai~~gLi 141 (161)
-+||++.+.++..|+++ ..+.-|.|+ +..++..+.+.|-+. |...+|+++ -+... |+|.++..||+
T Consensus 4 ~ddf~~r~~hl~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvSVERtVlr~mGidg-vda~~-iVd~~~e~gLL 77 (121)
T 3kp1_E 4 ADDFQQRRAHLANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPSIERSVLLRMGFSS-LEAKA-IVDKTMDRGLM 77 (121)
T ss_dssp --CHHHHTGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTTCCH-HHHHH-HHHHHHHTTCG
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhCCCc-cchHH-HHHHHHHcccc
Confidence 36788877788889844 445555554 667777777887775 888899984 33333 55466667765
No 193
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=24.74 E-value=1.6e+02 Score=19.62 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCE
Q 031323 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (161)
Q Consensus 87 L~~~~~~KlrlLtL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~ 151 (161)
|++.+..=++.|.-+.-...++.+++.+|++.+.++ ..-+=..|= ..-..|||+-.-+...+.
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~-~stLsR~l~-rLe~~GLV~r~~~~D~R~ 76 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLP-MSVLRRVLT-QLQAAGLADVSVEADGRG 76 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTSCE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCc-hhhHHHHHH-HHHHCCCEEeecCCCCce
Confidence 566655555555544333345678999999999998 777777666 888899999888755444
No 194
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=24.74 E-value=54 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=18.5
Q ss_pred HHHHHhhhcCCccCHHHHHHhcCCC
Q 031323 98 LTVLTLAETNKVLPYDELMEELDVT 122 (161)
Q Consensus 98 LtL~sLa~~~~~isy~~I~~~l~i~ 122 (161)
...+.-..-+++.||.+||+.++.+
T Consensus 11 w~~l~~IP~G~v~TYg~IA~~~G~p 35 (116)
T 3gva_A 11 YDAVCEIPYGKVSTYGEIARYVGMP 35 (116)
T ss_dssp HHHHTTSCTTCBBCHHHHHHHTTCT
T ss_pred HHHHhcCCCCCeEeHHHHHHHhCCC
Confidence 3344334468899999999999975
No 195
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.18 E-value=87 Score=19.94 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=22.6
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHhHh
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINECMY 137 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~ai~ 137 (161)
..|+.+||+.+||+ ...|-.|+- +.-.
T Consensus 23 g~s~~~ia~~~gIs-~~tl~rW~~-~~~~ 49 (97)
T 2jn6_A 23 GASLQQIANDLGIN-RVTLKNWII-KYGS 49 (97)
T ss_dssp GSCHHHHHHHHTSC-HHHHHHHHH-HHCC
T ss_pred CChHHHHHHHHCcC-HHHHHHHHH-HHhh
Confidence 47999999999997 999999976 5433
No 196
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.69 E-value=1.2e+02 Score=22.69 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=19.0
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHH
Q 031323 109 VLPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI 132 (161)
-.|+.+||+.++++ ...|+..+-
T Consensus 190 g~s~~eIa~~l~is-~~tV~~~~~ 212 (236)
T 2q0o_A 190 GKTASVTANLTGIN-ARTVQHYLD 212 (236)
T ss_dssp TCCHHHHHHHHCCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 47999999999998 888877654
No 197
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=23.41 E-value=1.2e+02 Score=23.70 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=32.2
Q ss_pred HHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCc
Q 031323 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIV 141 (161)
Q Consensus 100 L~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi 141 (161)
++.+|...+-+|-+++++.++.+ ..-....+- .+++.|++
T Consensus 159 vLela~~~g~vt~~~L~~~l~W~-~~Ra~~~L~-~l~~~Gll 198 (234)
T 3cuq_A 159 VLQLAEKNGYVTVSEIKASLKWE-TERARQVLE-HLLKEGLA 198 (234)
T ss_dssp HHHHHTTTSEECHHHHHHHHTCC-HHHHHHHHH-HHHHHTSC
T ss_pred HHHHHHhcCcCcHHHHHHHhCCC-HHHHHHHHH-HHHhCCCE
Confidence 55566677899999999999998 777777666 78888885
No 198
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=23.39 E-value=62 Score=26.79 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=22.6
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
..+||++|++.++++ .+++..-+- ...
T Consensus 214 ~~lt~~ei~~~t~i~-~~~L~r~L~-sL~ 240 (382)
T 3dpl_C 214 EKISFENLKLATELP-DAELRRTLW-SLV 240 (382)
T ss_dssp CCEEHHHHHHHHCCC-HHHHHHHHH-HHH
T ss_pred CcCcHHHHHHHHCcC-HHHHHHHHH-HHh
Confidence 689999999999999 888888765 443
No 199
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=22.84 E-value=1.2e+02 Score=22.55 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=18.9
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHH
Q 031323 109 VLPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI 132 (161)
-.|+.+||+.++++ ...|+..+-
T Consensus 188 g~s~~eIa~~l~is-~~tV~~~~~ 210 (234)
T 1l3l_A 188 GKTMEEIADVEGVK-YNSVRVKLR 210 (234)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 47999999999998 877776654
No 200
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=22.76 E-value=1.8e+02 Score=21.55 Aligned_cols=47 Identities=11% Similarity=0.240 Sum_probs=35.1
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVC 155 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V~ 155 (161)
...+++.++|+.++++ ...|=..+= +.-..||+.=+-|...+.+.+|
T Consensus 25 ~~~~s~s~aA~~L~is-q~avSr~I~-~LE~~~L~~R~~~~R~~~v~LT 71 (230)
T 3cta_A 25 RAYLTSSKLADMLGIS-QQSASRIII-DLEKNGYITRTVTKRGQILNIT 71 (230)
T ss_dssp EEECCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEC
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEEcCCeEEEEEC
Confidence 4578999999999998 777777655 6667899988877644444443
No 201
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=22.62 E-value=1.2e+02 Score=22.78 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.7
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHH
Q 031323 109 VLPYDELMEELDVTNVRELEDFLI 132 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI 132 (161)
-.|+.+||+.++++ ...|+..+-
T Consensus 190 G~s~~eIa~~l~is-~~tV~~~~~ 212 (237)
T 3szt_A 190 GKTYGEIGLILSID-QRTVKFHIV 212 (237)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH
Confidence 37899999999998 777776544
No 202
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=22.47 E-value=2e+02 Score=22.67 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=30.6
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
+.+|+++||+.++++ ..-++.|+= -+...|+++-
T Consensus 54 g~~t~~elA~~~g~~-~~~l~rlLr-~l~~~g~l~~ 87 (348)
T 3lst_A 54 GPRTPAELAAATGTD-ADALRRVLR-LLAVRDVVRE 87 (348)
T ss_dssp SCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHH-HHHhCCCEEe
Confidence 589999999999998 999999877 8889999975
No 203
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=22.45 E-value=98 Score=22.77 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=14.4
Q ss_pred hcCCccCHHHHHHhcCCC
Q 031323 105 ETNKVLPYDELMEELDVT 122 (161)
Q Consensus 105 ~~~~~isy~~I~~~l~i~ 122 (161)
...+-+||++||+++|++
T Consensus 22 K~~KGLTwe~IAe~iG~S 39 (156)
T 1dw9_A 22 KAKKDLSFAEIADGTGLA 39 (156)
T ss_dssp HHHTTCCHHHHHTTSSSC
T ss_pred HHHcCCCHHHHHHHhCcC
Confidence 345678999999998887
No 204
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=22.15 E-value=1.7e+02 Score=19.01 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=32.1
Q ss_pred CCccCHHHHHHhcC----CCChhhHHHHHHHHhHhcCCcEEEec
Q 031323 107 NKVLPYDELMEELD----VTNVRELEDFLINECMYTGIVRGKLD 146 (161)
Q Consensus 107 ~~~isy~~I~~~l~----i~~~~evE~lvI~~ai~~gLi~gkID 146 (161)
++.++-.+|++.++ ++ ...|=..+= .....|+|.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s-~~tv~~~l~-~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWS-PKTIRTLIT-RLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCC-HHHHHHHHH-HHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCc-HhhHHHHHH-HHHHCCCeEEEec
Confidence 35799999999998 66 788888766 8999999998777
No 205
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.05 E-value=68 Score=22.26 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEecCCCCEEEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkIDq~~~~v~V 154 (161)
+..++-.+|++.++++ ...|=..|= .....|+|+ +-|...+....
T Consensus 50 ~~~~t~~eLa~~l~~~-~~tvsr~v~-~Le~~glVr-~~~~~DrR~~~ 94 (148)
T 4fx0_A 50 GIDLTMSELAARIGVE-RTTLTRNLE-VMRRDGLVR-VMAGADARCKR 94 (148)
T ss_dssp ----CHHHHHHHHTCC-HHHHHHHHH-HHHHTTSBC------------
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEE-eeCCCCCCeeE
Confidence 3579999999999998 777777655 888899996 45665555443
No 206
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=22.05 E-value=2e+02 Score=22.28 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=30.0
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~g 143 (161)
+.+|+++||+.++++ ...++.|+= -+...|++.-
T Consensus 37 g~~t~~elA~~~~~~-~~~l~rlLr-~l~~~gl~~~ 70 (332)
T 3i53_A 37 GHRTAAEIASAAGAH-ADSLDRLLR-HLVAVGLFTR 70 (332)
T ss_dssp TCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEe
Confidence 489999999999998 999999877 7888999874
No 207
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=22.00 E-value=34 Score=24.36 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=28.4
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
+..+|+.+|++.++++ ...|-.-+- ..-..|+|++.
T Consensus 25 ~~~ls~~eLa~~lgvS-r~~vr~al~-~L~~~Gli~~~ 60 (163)
T 2gqq_A 25 DGRISNVELSKRVGLS-PTPCLERVR-RLERQGFIQGY 60 (163)
T ss_dssp CSSCCTTGGGTSSSCC-TTTSSSTHH-HHHHHTSEEEE
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEE
Confidence 4457999999999998 766666566 77789999863
No 208
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.67 E-value=1.4e+02 Score=17.94 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=7.8
Q ss_pred HHHhcCCCChhhHHHHHH
Q 031323 115 LMEELDVTNVRELEDFLI 132 (161)
Q Consensus 115 I~~~l~i~~~~evE~lvI 132 (161)
|++.++++ .+++-.++.
T Consensus 60 ia~~l~v~-~~~l~~~l~ 76 (80)
T 3kz3_A 60 LAKILKVS-VEEFSPSIA 76 (80)
T ss_dssp HHHHHTSC-GGGTCHHHH
T ss_pred HHHHhCCC-HHHHhHHHH
Confidence 44555554 444433333
No 209
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=21.16 E-value=1.4e+02 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=32.4
Q ss_pred HHHHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCc
Q 031323 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIV 141 (161)
Q Consensus 99 tL~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi 141 (161)
+++++|...+.+|-+++++.++.+ ..-....+- .+++.|++
T Consensus 171 ~vLe~a~~~g~vt~~~L~~~lgW~-~~Ra~~~L~-~l~~~G~l 211 (233)
T 1u5t_A 171 KILEICSILGYSSISLLKANLGWE-AVRSKSALD-EMVANGLL 211 (233)
T ss_dssp HHHHTTTTTSCCBHHHHHHHHCCC-SHHHHHHHH-HHHHTTSS
T ss_pred HHHHHHHhcCcCcHHHHHHHhCCC-HHHHHHHHH-HHHHCCCE
Confidence 455666667889999999999998 666666555 78888985
No 210
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=20.82 E-value=52 Score=22.67 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=18.0
Q ss_pred HHHHhhhcCCccCHHHHHHhcCCC
Q 031323 99 TVLTLAETNKVLPYDELMEELDVT 122 (161)
Q Consensus 99 tL~sLa~~~~~isy~~I~~~l~i~ 122 (161)
..+.-..-+++.||.+||+.++.+
T Consensus 10 ~~l~~IP~G~v~TYg~iA~~~G~p 33 (108)
T 2kif_A 10 AVIHQIPKGKVSTYGEIAKMAGYP 33 (108)
T ss_dssp HHHTTCCTTCBEEHHHHHHHHTCT
T ss_pred HHHhcCCCCCcEeHHHHHHHhCCC
Confidence 333333457899999999999976
No 211
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=20.68 E-value=1.3e+02 Score=22.96 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHhhhcCCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcE
Q 031323 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (161)
Q Consensus 101 ~sLa~~~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~ 142 (161)
++++...+-+|-.++++.++.+ ..-....+= .|+..|++=
T Consensus 160 l~~~~~~g~vt~~~la~~l~ws-~~~a~e~L~-~~e~~G~l~ 199 (218)
T 3cuq_B 160 LETVSEKGSLTSEEFAKLVGMS-VLLAKERLL-LAEKMGHLC 199 (218)
T ss_dssp HHHHHHTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEE
T ss_pred HHHHHHCCCcCHHHHHHHhCCC-HHHHHHHHH-HHHHcCCEE
Confidence 3444556789999999999998 665555555 788899863
No 212
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=20.58 E-value=1.2e+02 Score=19.53 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=29.0
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEEec
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gkID 146 (161)
+..+..+|++.++++ ...|=.-+= ..-.. +|..+-+
T Consensus 40 ~~~~~~ela~~l~is-~stvs~hL~-~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLP-QSTVSQHLC-KMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHH-hhhheEe
Confidence 469999999999998 888877766 66667 8887654
No 213
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=20.56 E-value=1.3e+02 Score=19.86 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=30.7
Q ss_pred cCCcc-CHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 106 TNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 106 ~~~~i-sy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
.+..+ |-.+|++.++++ ..-|-.-+- .....|+|.-+
T Consensus 39 ~g~~lps~~eLa~~lgVS-r~tVr~al~-~L~~~GlI~~~ 76 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGIT-RSVIVNALR-KLESAGVIESR 76 (102)
T ss_dssp TTEEEECHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCcCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 34455 999999999998 888888777 88899998754
No 214
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.50 E-value=78 Score=24.14 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.8
Q ss_pred ccCHHHHHHhcCCCChhhHHHHHHHHh
Q 031323 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (161)
Q Consensus 109 ~isy~~I~~~l~i~~~~evE~lvI~~a 135 (161)
..|+.+||+.++++ ...|...+- +|
T Consensus 212 G~s~~EIA~~L~iS-~~TVk~~l~-ra 236 (258)
T 3clo_A 212 GLSSKEIAATLYIS-VNTVNRHRQ-NI 236 (258)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 58999999999998 888877665 44
No 215
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.31 E-value=25 Score=24.90 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.1
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhH
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai 136 (161)
...||++||+.+|++ ...|...+= +|.
T Consensus 150 ~g~s~~eIA~~lgis-~~tV~~~l~-ra~ 176 (184)
T 2q1z_A 150 GDLTHRELAAETGLP-LGTIKSRIR-LAL 176 (184)
T ss_dssp SCCSSCCSTTTCCCC-CHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 358999999999998 999998876 664
No 216
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=20.29 E-value=1.1e+02 Score=23.87 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=30.7
Q ss_pred CccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 108 ~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
+..|.++||+.++++ ..-++.|+= -+...|+++-.
T Consensus 40 ~~~t~~ela~~~~~~-~~~l~r~Lr-~L~~~g~l~~~ 74 (334)
T 2ip2_A 40 GIDSDETLAAAVGSD-AERIHRLMR-LLVAFEIFQGD 74 (334)
T ss_dssp TCCSHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHH-HHHhCCceEec
Confidence 579999999999998 999999977 88889998753
No 217
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=20.07 E-value=86 Score=25.36 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=31.8
Q ss_pred CCccCHHHHHHhcCCCChhhHHHHHHHHhHhcCCcEEE
Q 031323 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (161)
Q Consensus 107 ~~~isy~~I~~~l~i~~~~evE~lvI~~ai~~gLi~gk 144 (161)
+..+|-.+|++.++++ ...|-..+= +.+..|+|...
T Consensus 31 ~~~~sr~~la~~~gls-~~tv~~~v~-~L~~~gli~~~ 66 (380)
T 2hoe_A 31 KSPVSRVELAEELGLT-KTTVGEIAK-IFLEKGIVVEE 66 (380)
T ss_dssp HSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred cCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee
Confidence 5689999999999998 999998776 99999999764
Done!