BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031325
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 5/158 (3%)
Query: 4 KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXX 63
K+L L L+ F NPKV LEQY T + AS +L+ A S GD+ KVVAD
Sbjct: 6 KELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTGVLS 64
Query: 64 XXXXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPF 123
+VI +++D +++++ EN + + D+ E+ VD V+ NPPF
Sbjct: 65 YGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS--EFNSRVDIVIXNPPF 122
Query: 124 GTRKKGVDMDFLSMALKVASQAVYSLHKTSTREVSRSV 161
G+++K D FL A ++ S VYS+H + EV R +
Sbjct: 123 GSQRKHADRPFLLKAFEI-SDVVYSIH-LAKPEVRRFI 158
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 6 LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXXXX 65
LE L L+Q N K LEQYPT A+ L N G++ + V D
Sbjct: 10 LEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACG 68
Query: 66 XXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
+ V A DID D++E A N ++F D+ + G DT + NPPFG+
Sbjct: 69 SYLLGAESVTAFDIDPDAIETAKRNCGG----VNFXVADVSEIS--GKYDTWIXNPPFGS 122
Query: 126 RKKGVDMDFLSMALKVASQAVYSLHKTSTREVSR 159
K D F+ A + S +YS+ R+ R
Sbjct: 123 VVKHSDRAFIDKAFET-SXWIYSIGNAKARDFLR 155
>pdb|3K0B|A Chain A, Crystal Structure Of A Predicted N6-Adenine-Specific Dna
Methylase From Listeria Monocytogenes Str. 4b F2365
Length = 393
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 74 VIAIDIDSDSLELASENAADLELD--IDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126
+I DID+ +E+A +NA + L I F Q + + + VV NPP+G R
Sbjct: 266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGER 320
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 74 VIAIDIDSDSLELASENAADLELD-IDFVQCDIRNL-EWRGHVDTVVMNPPFG---TRKK 128
V A D+D L LA E A L I F++ D R+L + VD ++ NPP G RK+
Sbjct: 231 VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKE 290
Query: 129 G---VDMDFLSMALKV 141
G + DFL AL +
Sbjct: 291 GLFHLYWDFLRGALAL 306
>pdb|3LDU|A Chain A, The Crystal Structure Of A Possible Methylase From
Clostridium Difficile 630
Length = 385
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 73 QVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126
++ DID +S+++A ENA A ++ I+F D + ++ NPP+G R
Sbjct: 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGER 314
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124
+VIAIDID + LA NA + I+F+ D L D V ++PP+G
Sbjct: 102 RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155
>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
Length = 206
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124
+VIAIDID + LA NA + I+F+ D L D V ++PP+G
Sbjct: 67 RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 120
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 73 QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVM 119
+V +D+ + LE+A E A + +DF D R LE VD + +
Sbjct: 56 EVTGVDLSEEXLEIAQEKAXETNRHVDFWVQDXRELELPEPVDAITI 102
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 74 VIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW------RGHV-DTVVMNPPF 123
V A+D+ D+L +A NA +D+ D +EW RG +V NPP+
Sbjct: 57 VTAVDLSXDALAVARRNAERFGAVVDWAAAD--GIEWLIERAERGRPWHAIVSNPPY 111
>pdb|1R7T|A Chain A, Glycosyltransferase A In Complex With 3-Deoxy-Acceptor
Analog Inhibitor
pdb|1R7V|A Chain A, Glycosyltransferase A In Complex With 3-Amino-Acceptor
Analog Inhibitor
pdb|1R7Y|A Chain A, Glycosyltransferase A In Complex With 3-Amino-Acceptor
Analog Inhibitor And Uridine Diphosphate
pdb|1R81|A Chain A, Glycosyltransferase A In Complex With 3-amino-acceptor
Analog Inhibitor And Uridine
Diphosphate-n-acetyl-galactose
Length = 283
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 173
>pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
Length = 445
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 114 VDTVVMNPPFGTRKKG-VDMD 133
VD ++ NPPFGTR G VD++
Sbjct: 254 VDVILANPPFGTRPAGSVDIN 274
>pdb|3SX3|A Chain A, Crystal Structure Of Aabb+udp+gal With Glycerol As The
Cryoprotectant
pdb|3SX5|A Chain A, Crystal Structure Of Aabb+udp+gal With Mpd As The
Cryoprotectant
Length = 293
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 122 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 174
>pdb|1WT0|A Chain A, Mutant Human Abo(H) Blood Group Glycosyltransferase A
pdb|1WT3|A Chain A, Mutant Human Abo(H) Blood Group Glycosyltransferase With
Bound Udp And Acceptor
Length = 292
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 173
>pdb|1WSZ|A Chain A, Mutant Human Abo(H) Blood Group Transferase A
pdb|1WT2|A Chain A, Mutant Human Abo(H) Blood Group Glycosyltransferase A With
Bound Udp And Inhibitor
Length = 292
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 173
>pdb|3IOH|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (Gta, Cisab Mutant
L266g, G
pdb|3IOI|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (Gta, Cisab Mutant
L266g, G Complex With A Novel Udp-Gal Derived Inhibitor
(1gw)
pdb|3IOJ|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (Gta, Cisab Mutant
L266g, G Complex With Udp
pdb|3IOJ|B Chain B, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (Gta, Cisab Mutant
L266g, G Complex With Udp
pdb|3U0Y|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (Gta, Cisab Mutant
L266g, G268a) In Complex With Compound 382 And Udp
pdb|3U0Y|B Chain B, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (Gta, Cisab Mutant
L266g, G268a) In Complex With Compound 382 And Udp
pdb|3V0L|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-gal Derived
Inhibitor (2gw)
pdb|3V0M|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-gal Derived
Inhibitor (5gw) And H-antigen Acceptor
pdb|3V0M|B Chain B, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-gal Derived
Inhibitor (5gw) And H-antigen Acceptor
pdb|3V0N|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-galnac Derived
Inhibitor (3gw And 4gw)
pdb|3V0N|B Chain B, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-galnac Derived
Inhibitor (3gw And 4gw)
pdb|3V0O|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-galnac Derived
Inhibitor (4gw) And H-antigen Acceptor
pdb|3V0O|B Chain B, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-galnac Derived
Inhibitor (4gw) And H-antigen Acceptor
pdb|3V0P|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-gal Derived
Inhibitor (4gw) And H-antigen Acceptor
pdb|3V0P|B Chain B, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With A Novel Udp-gal Derived
Inhibitor (4gw) And H-antigen Acceptor
pdb|3V0Q|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With Udp And H-antigen Acceptor
pdb|3V0Q|B Chain B, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With Udp And H-antigen Acceptor
pdb|3ZGF|A Chain A, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With In Complex With Npe Caged
Udp-gal ( P2(1)2(1)2(1) Space Group)
pdb|3ZGF|B Chain B, Crystal Structure Of The Fucosylgalactoside Alpha N-
Acetylgalactosaminyltransferase (gta, Cisab Mutant
L266g, G268a) In Complex With In Complex With Npe Caged
Udp-gal ( P2(1)2(1)2(1) Space Group)
Length = 298
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 127 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 179
>pdb|2RJ5|A Chain A, B-Specific Alpha-1,3-Galactosyltransferase G176r S235g
Mutant (Aabb) +udp
pdb|2RJ6|A Chain A, B-Specific Alpha-1,3-Galactosyltransferase G176r S235g
Mutant (Aabb) + H-Antigen Disaccharide
pdb|2RJ7|A Chain A, B-Specific Alpha-1,3-Galactosyltransferase G176r S235g
Mutant (Aabb) + Udpgal + Deoxy-Acceptor
Length = 294
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 122 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 174
>pdb|1ZHJ|A Chain A, Crystal Structure Of Human
N-Acetylgalactosaminyltransferase (Gta) Complexed With
Galactose
Length = 297
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 126 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 178
>pdb|1WT1|A Chain A, Mutant Abo(H) Blood Group Glycosyltransferase With Bound
Udp And Acceptor
pdb|1XZ6|A Chain A, Mutant Abo(h) Blood Group Glycosyltransferase A
Length = 292
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 173
>pdb|1ZI1|A Chain A, Crystal Structure Of Human
N-Acetylgalactosaminyltransferase (Gta) Complexed With
Lactose
pdb|1ZI3|A Chain A, Crystal Structure Of Human
N-Acetylgalactosaminyltransferase (Gta) Complexed With
N-Acetyllactosamine
pdb|1ZI5|A Chain A, Crystal Structure Of Human
N-Acetylgalactosaminyltransferase (Gta) Complexed With H
Type I Trisaccharide
pdb|1ZJO|A Chain A, Crystal Structure Of Human
N-Acetylgalactosaminyltransferase (Gta) Complexed With
Galactose-Grease
pdb|2A8W|A Chain A, Crystal Structure Of Human
N-Acetylgalactosaminyltransferase (Gta) Complexed With
Beta-Methyllactoside
pdb|3SXE|A Chain A, Crystal Structure Of Aaaa+udp+gal With Glycerol As The
Cryoprotectant
pdb|3SXG|A Chain A, Crystal Structure Of Aaaa+udp+gal With Mpd As The
Cryoprotectant
Length = 293
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 122 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 174
>pdb|1ZI4|A Chain A, Crystal Structure Of Human
N-Acetylgalactosaminyltransferase (Gta) Complexed With H
Type Ii Trisaccharide
Length = 294
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 123 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 175
>pdb|1LZ0|A Chain A, Glycosyltransferase A
pdb|1LZI|A Chain A, Glycosyltransferase A + Udp + H Antigen Acceptor
Length = 292
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT G
Sbjct: 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPG 173
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 73 QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
+V+ +DI D + A E A E +++F+ D R L +
Sbjct: 62 EVVGVDISEDXIRKAREYAKSRESNVEFIVGDARKLSF 99
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 73 QVIAIDIDSDSLELASENAADLEL-DIDFVQCD----IRNLEWRG-HVDTVVMNPP-FGT 125
+V+A+D +++L A ENA L ++ ++ + +R LE G D VV++PP F
Sbjct: 233 EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAK 292
Query: 126 RKKGVDMDF 134
KK V+ +
Sbjct: 293 GKKDVERAY 301
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 73 QVIAIDIDSDSLELASENAADLEL-DIDFVQCD----IRNLEWRG-HVDTVVMNPP-FGT 125
+V+A+D +++L A ENA L ++ ++ + +R LE G D VV++PP F
Sbjct: 233 EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAK 292
Query: 126 RKKGVDMDF 134
KK V+ +
Sbjct: 293 GKKDVERAY 301
>pdb|4E74|A Chain A, Crystal Structure Of The Rho Gtpase Binding Domain Of
Plexin A4a
Length = 117
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 72 DQVIAIDIDSDSLELAS---ENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKK 128
D++I ID +L L+ +NA E+ + + CD +D + N P R K
Sbjct: 2 DKLIRQQIDYKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPK 61
Query: 129 GVDMDF 134
DMD
Sbjct: 62 AADMDL 67
>pdb|3I0C|A Chain A, Crystal Structure Of Gtb C80sC196S UNLIGANDED
pdb|3I0D|A Chain A, Crystal Structure Of Gtb C80sC196S + UDP
pdb|3I0E|A Chain A, Crystal Structure Of Gtb C80sC196S + H-Antigen
pdb|3I0F|A Chain A, Crystal Structure Of Gtb C80sC196S + UDP + H ANTIGEN
pdb|3I0G|A Chain A, Crystal Structure Of Gtb C80sC196S + DA + UDP-Gal
Length = 287
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ + L ++D++ C ++E+R HV ++ P FGT
Sbjct: 115 DVSMRRMEMISDFSERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 163
>pdb|2Y7A|A Chain A, Crystal Structure Of Unliganded Gtb P156l
pdb|2Y7A|B Chain B, Crystal Structure Of Unliganded Gtb P156l
pdb|2Y7A|C Chain C, Crystal Structure Of Unliganded Gtb P156l
pdb|2Y7A|D Chain D, Crystal Structure Of Unliganded Gtb P156l
Length = 298
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 127 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 175
>pdb|1R7U|A Chain A, Glycosyltransferase B In Complex With 3-Deoxy-Acceptor
Analog Inhibitor
pdb|1R7X|A Chain A, Glycosyltransferase B In Complex With 3-Amino-Acceptor
Analog Inhibitor
pdb|1R80|A Chain A, Glycosyltransferase B In Complex With 3-Amino-Acceptor
Analog Inhibitor And Uridine Diphosphate
pdb|1R82|A Chain A, Glycosyltransferase B In Complex With 3-Amino-Acceptor
Analog Inhibitor, And Uridine Diphosphate-Galactose
Length = 283
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 169
>pdb|3SXA|A Chain A, Crystal Structure Of Abbb+udp+gal With Glycerol As The
Cryoprotectant
pdb|3SXB|A Chain A, Crystal Structure Of Abbb+udp+gal With Mpd As The
Cryoprotectant
Length = 293
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 122 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 170
>pdb|2RIZ|A Chain A, Unliganded B-Specific-1,3-Galactosyltransferase G176r
Mutant (Abbb)
pdb|2RJ0|A Chain A, B-Specific Alpha-1,3-Galactosyltransferase G176r Mutant +
Udp+ Mn2+
pdb|2RJ1|A Chain A, B-Specific Alpha-1,3-Galactosyltransferase (Gtb) G176r
Mutant + Udp + H-Antigen Disaccharide
pdb|2RJ4|A Chain A, B-Specific Alpha-1,3-Galactosyltransferase G176r +udp+ada
Length = 294
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 122 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 170
>pdb|3U0X|A Chain A, Crystal Structure Of The
B-Specific-1,3-Galactosyltransferase (Gtb) In Complex
With Compound 382
pdb|3U0X|B Chain B, Crystal Structure Of The
B-Specific-1,3-Galactosyltransferase (Gtb) In Complex
With Compound 382
Length = 298
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 127 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 175
>pdb|3SX7|A Chain A, Crystal Structure Of Abba+udp+gal With Glycerol As The
Cryoprotectant
pdb|3SX8|A Chain A, Crystal Structure Of Abba+udp+gal With Mpd As The
Cryoprotectant
Length = 293
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 122 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 170
>pdb|1ZIZ|A Chain A, Crystal Structure Of Human Galactosyltransferase (Gtb)
Complexed With Galactose
pdb|1ZJ0|A Chain A, Crystal Structure Of Human Galactosyltransferase (Gtb)
Complexed With Lactose
pdb|1ZJ1|A Chain A, Crystal Structure Of Human Galactosyltransferase (Gtb)
Complexed With N-Acetyllactosamine
pdb|1ZJ2|A Chain A, Crystal Structure Of Human Galactosyltransferase (gtb)
Complexed With H Type I Trisaccharide
pdb|1ZJ3|A Chain A, Crystal Structure Of Human Galactosyltransferase (Gtb)
Complexed With H Type Ii Trisaccharide
pdb|1ZJP|A Chain A, Crystal Structure Of Human Galactosyltransferase (Gtb)
Complexed With Galactose-Grease
pdb|2A8U|A Chain A, Crystal Structure Of Human Galactosyltransferase (gtb)
Complexed With Beta-methyl Lactoside
pdb|3SXC|A Chain A, Crystal Structure Of Bbbb+udp+gal With Glycerol As The
Cryoprotectant
pdb|3SXD|A Chain A, Crystal Structure Of Bbbb+udp+gal With Mpd As The
Cryoprotectant
Length = 293
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 122 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 170
>pdb|1LZ7|A Chain A, Glycosyltransferase B
pdb|1LZJ|A Chain A, Glycosyltransferase B + Udp + H Antigen Acceptor
Length = 292
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 169
>pdb|2RIT|A Chain A, Unliganded B-Specific-1,3-Galactosyltransferase (Gtb)
pdb|2RIX|A Chain A, B-Specific-1,3-Galactosyltransferase)(Gtb) + Udp
pdb|2RIY|A Chain A, B-Specific-1,3-Galactosyltransferase (Gtb)+h-Antigen
Acceptor
pdb|2RJ8|A Chain A, B-Specific Alpha-1,3-Galactosyltransferase (Gtb) +udp+
H-Antigen Disaccharide
pdb|2RJ9|A Chain A, B-Specific Alpha-1,3-Galactosyltransferase (Gtb) + Udp+
Amino-Deoxy- Acceptor
Length = 294
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 122 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 170
>pdb|2I7B|A Chain A, Structure Of The Naturally Occuring Mutant Of Human Abo(h)
Blood Group B Glycosyltransferase: Gtb/a268t
Length = 292
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C ++E+R HV ++ P FGT
Sbjct: 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGT 169
>pdb|3C0K|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltranferase
pdb|3C0K|B Chain B, Crystal Structure Of A Ribosomal Rna Methyltranferase
Length = 396
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 73 QVIAIDIDSDSLELASENAADLELDI---DFVQCDI----RNLEWRGH-VDTVVMNPP 122
QV+++D ++L++A +N +LD+ +FV+ D+ R RG D +V +PP
Sbjct: 245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVXDPP 302
>pdb|3T5X|A Chain A, Pcid2:dss1 Structure
Length = 203
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 95 ELDIDFVQCDIRNLEWRGHVDTVV 118
++DID VQC + NL + GHV +
Sbjct: 158 DVDIDEVQCILANLIYMGHVKGYI 181
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 74 VIAIDIDSDSLELASENAADL 94
V+A+DI + LELA E ADL
Sbjct: 191 VVAVDIGDEKLELAKELGADL 211
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 74 VIAIDIDSDSLELASENAADL 94
V+A+DI + LELA E ADL
Sbjct: 191 VVAVDIGDEKLELAKELGADL 211
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 114 VDTVVMNPPFGTRKKGVDMDFLSMALKV 141
+D +V+NP + R+K D+ + + +KV
Sbjct: 75 IDQIVINPHYNKRRKNNDIAMMHLEMKV 102
>pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain
Length = 627
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 72 DQVIAIDIDSDSLEL---ASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKK 128
D++I ID +L L E+ ++ + + CD +DTV P+ R K
Sbjct: 222 DKLIRQQIDYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPK 281
Query: 129 GVDMDF 134
DMD
Sbjct: 282 AEDMDL 287
>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|B Chain B, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|C Chain C, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|D Chain D, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|3JV7|A Chain A, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|B Chain B, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|C Chain C, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|D Chain D, Structure Of Adh-A From Rhodococcus Ruber
Length = 345
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 73 QVIAIDIDSDSLELASENAAD 93
+VIA+D+D D L LA E AD
Sbjct: 198 RVIAVDLDDDRLALAREVGAD 218
>pdb|2O1G|A Chain A, Natural Occurring Mutant Of Human Abo(H)
Galactosyltransferase: GtbM214T
pdb|2O1H|A Chain A, Naturally Occurring Mutation Of Humna Abo(H)
Galactosyltransferase In Complex With Udp: GtbM214T_UDP
Length = 297
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C + E+R HV ++ P FGT
Sbjct: 126 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDTEFRDHVGVEILTPLFGT 174
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 73 QVIAIDIDSDSLELASENAADLELD------IDFVQCDIRNLEWRGHVDTVVMNPPFG 124
V AIDID LELA + A L ++ ++ +Q DI G + T V N FG
Sbjct: 196 HVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGA--HGVLVTAVSNSAFG 251
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 73 QVIAIDIDSDSLELASENAADLELD 97
+VIA+DI+ D L LA + AD+ ++
Sbjct: 190 KVIAVDINQDKLNLAKKIGADVTIN 214
>pdb|2O1F|A Chain A, Natural Occuring Mutation Of Human Abo(H)
Galactosyltransferase: GtbM214R
Length = 297
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 78 DIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125
D+ +E+ S+ L ++D++ C + E+R HV ++ P FGT
Sbjct: 126 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDREFRDHVGVEILTPLFGT 174
>pdb|3Q3J|A Chain A, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 112
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 89 ENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDF 134
+N E+ + + CD +D V N P+ R + VDMD
Sbjct: 20 DNENSPEIPVKVLNCDTITQVKEKILDAVYKNVPYSQRPRAVDMDL 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,826,740
Number of Sequences: 62578
Number of extensions: 119659
Number of successful extensions: 407
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 48
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)