Query 031325
Match_columns 161
No_of_seqs 147 out of 1146
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 12:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2263 Predicted RNA methylas 99.9 2E-26 4.3E-31 152.8 15.2 154 3-160 1-154 (198)
2 KOG3420 Predicted RNA methylas 99.9 6.3E-28 1.4E-32 152.9 7.2 159 1-160 1-160 (185)
3 COG2226 UbiE Methylase involve 99.8 1.3E-19 2.9E-24 126.5 12.8 102 48-151 51-155 (238)
4 PF01209 Ubie_methyltran: ubiE 99.8 3.8E-19 8.3E-24 125.0 11.4 142 3-150 6-151 (233)
5 PF05175 MTS: Methyltransferas 99.8 2.9E-18 6.3E-23 115.5 12.3 113 32-148 19-136 (170)
6 TIGR00452 methyltransferase, p 99.8 8.7E-18 1.9E-22 122.5 15.2 145 3-149 75-222 (314)
7 PHA03412 putative methyltransf 99.8 1.5E-17 3.2E-22 115.5 13.8 122 19-150 26-161 (241)
8 PF12847 Methyltransf_18: Meth 99.8 7.2E-18 1.6E-22 106.0 11.3 104 48-151 1-110 (112)
9 TIGR01177 conserved hypothetic 99.8 9.9E-18 2.1E-22 123.8 13.3 122 26-148 160-290 (329)
10 TIGR00477 tehB tellurite resis 99.8 9.3E-18 2E-22 115.4 12.3 100 47-147 29-128 (195)
11 PRK11207 tellurite resistance 99.8 1.3E-17 2.9E-22 114.9 12.7 101 46-147 28-129 (197)
12 PRK03522 rumB 23S rRNA methylu 99.8 1.2E-17 2.6E-22 122.6 13.2 125 26-155 151-279 (315)
13 TIGR00138 gidB 16S rRNA methyl 99.8 1.9E-17 4.2E-22 112.4 12.5 129 16-150 10-140 (181)
14 PF13659 Methyltransf_26: Meth 99.8 8.4E-18 1.8E-22 106.6 9.9 101 49-149 1-112 (117)
15 COG4123 Predicted O-methyltran 99.8 1.4E-17 3.1E-22 116.4 11.5 104 47-150 43-170 (248)
16 PF13847 Methyltransf_31: Meth 99.8 2.1E-17 4.6E-22 109.5 11.6 101 48-150 3-108 (152)
17 PRK14967 putative methyltransf 99.7 8E-17 1.7E-21 113.0 13.8 105 45-149 33-156 (223)
18 COG2265 TrmA SAM-dependent met 99.7 3E-17 6.6E-22 124.1 12.2 126 24-154 269-400 (432)
19 TIGR02085 meth_trns_rumB 23S r 99.7 4.2E-17 9.1E-22 122.2 12.8 124 26-154 211-338 (374)
20 PF03848 TehB: Tellurite resis 99.7 9.5E-17 2E-21 108.9 12.9 105 45-150 27-131 (192)
21 PF01170 UPF0020: Putative RNA 99.7 8.9E-17 1.9E-21 109.0 12.7 118 32-149 12-148 (179)
22 PRK00107 gidB 16S rRNA methylt 99.7 2.1E-16 4.6E-21 107.6 13.8 110 35-150 32-143 (187)
23 PRK10909 rsmD 16S rRNA m(2)G96 99.7 7.9E-17 1.7E-21 110.6 11.7 103 47-152 52-161 (199)
24 TIGR03533 L3_gln_methyl protei 99.7 3.3E-16 7.1E-21 113.4 14.8 103 48-150 121-249 (284)
25 TIGR00537 hemK_rel_arch HemK-r 99.7 3.3E-16 7.1E-21 106.4 13.9 97 48-146 19-134 (179)
26 PRK15068 tRNA mo(5)U34 methylt 99.7 2.7E-16 5.8E-21 115.6 14.4 146 3-150 76-224 (322)
27 PRK15001 SAM-dependent 23S rib 99.7 1.6E-16 3.4E-21 118.4 13.3 107 44-150 224-340 (378)
28 COG2227 UbiG 2-polyprenyl-3-me 99.7 3.9E-17 8.4E-22 112.8 9.0 105 47-154 58-163 (243)
29 PRK13168 rumA 23S rRNA m(5)U19 99.7 1.9E-16 4.1E-21 121.2 13.2 122 27-154 276-404 (443)
30 TIGR02752 MenG_heptapren 2-hep 99.7 3E-16 6.6E-21 110.6 13.0 107 42-150 39-149 (231)
31 PLN02244 tocopherol O-methyltr 99.7 6.2E-16 1.3E-20 114.7 14.8 116 32-149 97-220 (340)
32 COG1041 Predicted DNA modifica 99.7 1.1E-16 2.4E-21 116.2 10.5 120 29-153 182-311 (347)
33 PRK11805 N5-glutamine S-adenos 99.7 5.6E-16 1.2E-20 113.2 13.8 101 50-150 135-261 (307)
34 PRK14966 unknown domain/N5-glu 99.7 4.9E-16 1.1E-20 116.2 13.6 95 29-125 234-331 (423)
35 COG2230 Cfa Cyclopropane fatty 99.7 5.1E-16 1.1E-20 110.5 12.9 121 29-151 53-175 (283)
36 PRK12335 tellurite resistance 99.7 4E-16 8.7E-21 113.3 12.3 99 48-147 120-218 (287)
37 COG2813 RsmC 16S RNA G1207 met 99.7 7.8E-16 1.7E-20 109.9 13.3 110 40-151 150-267 (300)
38 PF08241 Methyltransf_11: Meth 99.7 3.3E-16 7.1E-21 95.3 9.8 93 53-149 1-94 (95)
39 TIGR03534 RF_mod_PrmC protein- 99.7 1.1E-15 2.3E-20 109.0 14.0 118 32-150 72-215 (251)
40 PF02353 CMAS: Mycolic acid cy 99.7 5.1E-16 1.1E-20 111.5 12.2 118 30-150 44-164 (273)
41 TIGR00536 hemK_fam HemK family 99.7 1.1E-15 2.4E-20 110.9 14.0 119 32-150 97-242 (284)
42 COG2890 HemK Methylase of poly 99.7 3.2E-16 7E-21 113.0 10.8 98 27-126 90-189 (280)
43 PLN02396 hexaprenyldihydroxybe 99.7 4E-16 8.7E-21 114.3 11.4 102 47-151 130-234 (322)
44 PF13649 Methyltransf_25: Meth 99.7 1.1E-16 2.4E-21 98.9 6.9 94 52-145 1-100 (101)
45 PRK14103 trans-aconitate 2-met 99.7 2.9E-16 6.2E-21 112.3 10.1 108 35-150 16-124 (255)
46 PF05958 tRNA_U5-meth_tr: tRNA 99.7 4.8E-16 1E-20 115.6 11.3 124 25-155 174-315 (352)
47 PRK09489 rsmC 16S ribosomal RN 99.7 1.3E-15 2.8E-20 112.7 13.5 100 48-148 196-299 (342)
48 PRK11036 putative S-adenosyl-L 99.7 1.1E-15 2.3E-20 109.4 12.2 100 47-149 43-146 (255)
49 PRK01683 trans-aconitate 2-met 99.7 9E-16 1.9E-20 109.9 11.0 109 36-150 19-128 (258)
50 TIGR00479 rumA 23S rRNA (uraci 99.7 1.6E-15 3.5E-20 115.9 12.8 122 28-154 272-400 (431)
51 PRK10258 biotin biosynthesis p 99.7 9.2E-16 2E-20 109.5 10.7 114 31-151 25-139 (251)
52 PLN02233 ubiquinone biosynthes 99.7 4.2E-15 9E-20 106.6 14.0 104 45-150 70-180 (261)
53 PRK05031 tRNA (uracil-5-)-meth 99.7 1.7E-15 3.7E-20 113.1 12.3 122 26-154 185-324 (362)
54 PRK09328 N5-glutamine S-adenos 99.7 3.6E-15 7.9E-20 107.7 13.7 119 32-150 92-236 (275)
55 PHA03411 putative methyltransf 99.7 9.1E-16 2E-20 108.9 10.2 98 23-130 45-143 (279)
56 PRK00121 trmB tRNA (guanine-N( 99.7 1.6E-15 3.5E-20 104.8 11.2 108 48-155 40-159 (202)
57 PRK01544 bifunctional N5-gluta 99.7 3E-15 6.5E-20 116.0 13.7 79 48-126 138-219 (506)
58 PRK15451 tRNA cmo(5)U34 methyl 99.7 2.7E-15 5.9E-20 106.8 12.3 102 48-150 56-162 (247)
59 TIGR03704 PrmC_rel_meth putati 99.7 5E-15 1.1E-19 105.5 13.6 95 29-125 66-165 (251)
60 COG2242 CobL Precorrin-6B meth 99.7 1.2E-14 2.7E-19 97.1 14.1 116 36-157 22-140 (187)
61 TIGR02143 trmA_only tRNA (urac 99.6 3.3E-15 7E-20 111.2 12.5 120 28-154 178-315 (353)
62 PF03602 Cons_hypoth95: Conser 99.6 1.2E-15 2.6E-20 103.6 9.1 124 27-154 23-156 (183)
63 TIGR02021 BchM-ChlM magnesium 99.6 5.6E-15 1.2E-19 103.4 12.8 104 46-152 53-158 (219)
64 PTZ00098 phosphoethanolamine N 99.6 3.8E-15 8.3E-20 106.9 11.9 111 40-151 44-155 (263)
65 PRK05785 hypothetical protein; 99.6 5.4E-15 1.2E-19 103.9 12.3 111 28-149 33-144 (226)
66 COG2264 PrmA Ribosomal protein 99.6 3.8E-15 8.3E-20 106.9 11.4 119 26-150 141-261 (300)
67 TIGR03840 TMPT_Se_Te thiopurin 99.6 3.7E-15 8E-20 103.6 10.9 97 48-145 34-145 (213)
68 TIGR02469 CbiT precorrin-6Y C5 99.6 2.2E-14 4.7E-19 91.5 13.5 106 41-151 12-121 (124)
69 smart00650 rADc Ribosomal RNA 99.6 3.2E-15 7E-20 100.6 9.8 84 40-125 5-89 (169)
70 TIGR03587 Pse_Me-ase pseudamin 99.6 1.1E-14 2.4E-19 100.7 12.4 97 47-148 42-140 (204)
71 TIGR00095 RNA methyltransferas 99.6 1.1E-14 2.5E-19 99.5 12.4 105 47-154 48-162 (189)
72 TIGR00740 methyltransferase, p 99.6 7.3E-15 1.6E-19 104.1 11.6 103 48-151 53-160 (239)
73 TIGR00080 pimt protein-L-isoas 99.6 1.8E-14 3.8E-19 100.7 13.2 108 36-151 65-176 (215)
74 PRK14968 putative methyltransf 99.6 3.8E-14 8.3E-19 96.8 14.4 102 47-149 22-145 (188)
75 PRK15128 23S rRNA m(5)C1962 me 99.6 2E-14 4.3E-19 108.2 13.8 104 48-151 220-339 (396)
76 KOG1540 Ubiquinone biosynthesi 99.6 2.2E-14 4.8E-19 99.6 12.7 114 37-152 89-214 (296)
77 PRK11705 cyclopropane fatty ac 99.6 2.6E-14 5.7E-19 107.4 13.7 115 32-150 151-265 (383)
78 COG4106 Tam Trans-aconitate me 99.6 5.1E-15 1.1E-19 100.5 8.7 109 40-154 22-132 (257)
79 PRK06922 hypothetical protein; 99.6 7.6E-15 1.6E-19 114.7 10.7 105 47-151 417-536 (677)
80 COG0742 N6-adenine-specific me 99.6 4.4E-14 9.5E-19 94.9 12.9 94 32-125 25-126 (187)
81 PRK13944 protein-L-isoaspartat 99.6 6.3E-14 1.4E-18 97.1 14.0 107 36-150 60-171 (205)
82 PF06325 PrmA: Ribosomal prote 99.6 1.6E-14 3.4E-19 104.5 10.9 119 25-150 139-257 (295)
83 PLN02336 phosphoethanolamine N 99.6 4E-14 8.7E-19 109.5 13.6 106 43-150 261-367 (475)
84 PRK08287 cobalt-precorrin-6Y C 99.6 7.3E-14 1.6E-18 95.5 13.3 100 45-150 28-129 (187)
85 PF05401 NodS: Nodulation prot 99.6 3.1E-14 6.7E-19 96.0 11.1 104 45-150 40-144 (201)
86 TIGR00091 tRNA (guanine-N(7)-) 99.6 2.2E-14 4.7E-19 98.7 10.3 107 48-154 16-134 (194)
87 TIGR00446 nop2p NOL1/NOP2/sun 99.6 4.8E-14 1E-18 101.3 12.4 108 45-152 68-202 (264)
88 PRK13942 protein-L-isoaspartat 99.6 1.1E-13 2.4E-18 96.4 13.8 108 35-150 63-174 (212)
89 PRK11873 arsM arsenite S-adeno 99.6 5.1E-14 1.1E-18 101.6 12.6 103 46-150 75-181 (272)
90 TIGR00406 prmA ribosomal prote 99.6 8E-14 1.7E-18 101.3 13.5 116 28-150 140-257 (288)
91 PLN02585 magnesium protoporphy 99.6 5.1E-14 1.1E-18 103.0 12.4 103 47-152 143-251 (315)
92 PF09445 Methyltransf_15: RNA 99.6 3.1E-14 6.8E-19 94.1 10.1 104 50-154 1-124 (163)
93 PRK14903 16S rRNA methyltransf 99.6 7.4E-14 1.6E-18 106.5 13.4 112 45-156 234-373 (431)
94 PRK14904 16S rRNA methyltransf 99.6 7.1E-14 1.5E-18 107.2 13.3 108 45-152 247-380 (445)
95 PRK13255 thiopurine S-methyltr 99.6 3.1E-14 6.8E-19 99.3 10.3 98 47-145 36-148 (218)
96 COG0116 Predicted N6-adenine-s 99.6 5.5E-14 1.2E-18 103.6 11.9 113 31-143 174-335 (381)
97 PRK10901 16S rRNA methyltransf 99.6 1E-13 2.2E-18 105.8 13.7 105 45-149 241-369 (427)
98 PRK11783 rlmL 23S rRNA m(2)G24 99.6 3.3E-14 7.1E-19 114.2 11.2 101 48-148 538-652 (702)
99 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.1E-13 2.4E-18 102.0 13.1 113 32-148 96-211 (340)
100 PRK06202 hypothetical protein; 99.6 6.6E-14 1.4E-18 98.8 11.5 97 47-145 59-161 (232)
101 PRK00377 cbiT cobalt-precorrin 99.6 1.3E-13 2.8E-18 95.1 12.5 106 41-151 33-144 (198)
102 PRK14896 ksgA 16S ribosomal RN 99.6 5E-14 1.1E-18 100.9 10.8 96 23-125 8-103 (258)
103 PRK14121 tRNA (guanine-N(7)-)- 99.6 1.1E-13 2.3E-18 103.1 12.7 114 44-157 118-240 (390)
104 PRK00274 ksgA 16S ribosomal RN 99.6 4.8E-14 1E-18 101.7 10.5 94 25-125 23-117 (272)
105 PLN03075 nicotianamine synthas 99.6 2.2E-13 4.8E-18 98.1 13.8 104 47-151 122-232 (296)
106 PTZ00338 dimethyladenosine tra 99.5 7.6E-14 1.6E-18 101.3 10.8 101 21-127 13-115 (294)
107 KOG1271 Methyltransferases [Ge 99.5 7.7E-14 1.7E-18 92.4 9.6 148 11-159 27-191 (227)
108 PRK07580 Mg-protoporphyrin IX 99.5 4.2E-13 9.1E-18 94.5 14.0 102 46-150 61-164 (230)
109 KOG2187 tRNA uracil-5-methyltr 99.5 8.6E-14 1.9E-18 105.1 10.4 125 25-154 360-494 (534)
110 PRK14901 16S rRNA methyltransf 99.5 3.2E-13 6.9E-18 103.3 13.7 109 44-152 248-387 (434)
111 smart00828 PKS_MT Methyltransf 99.5 1E-13 2.2E-18 97.3 10.0 99 50-150 1-102 (224)
112 PRK08317 hypothetical protein; 99.5 5.7E-13 1.2E-17 94.0 13.7 111 38-150 9-122 (241)
113 PRK00312 pcm protein-L-isoaspa 99.5 5.9E-13 1.3E-17 92.8 13.5 99 43-150 73-173 (212)
114 PRK04266 fibrillarin; Provisio 99.5 7.1E-13 1.5E-17 92.9 13.8 114 31-150 56-174 (226)
115 PRK07402 precorrin-6B methylas 99.5 6.9E-13 1.5E-17 91.4 13.6 104 43-152 35-142 (196)
116 PLN02336 phosphoethanolamine N 99.5 1.5E-13 3.3E-18 106.3 11.2 108 42-151 31-141 (475)
117 COG1092 Predicted SAM-dependen 99.5 1.7E-13 3.6E-18 102.3 10.9 104 48-151 217-336 (393)
118 PRK00216 ubiE ubiquinone/menaq 99.5 3.7E-13 7.9E-18 95.1 12.1 103 45-149 48-155 (239)
119 TIGR02072 BioC biotin biosynth 99.5 1.9E-13 4.1E-18 96.6 10.4 99 47-150 33-133 (240)
120 PRK14902 16S rRNA methyltransf 99.5 5.2E-13 1.1E-17 102.5 13.5 105 45-149 247-376 (444)
121 PF08003 Methyltransf_9: Prote 99.5 5.2E-13 1.1E-17 95.6 12.4 141 3-145 69-212 (315)
122 PLN02781 Probable caffeoyl-CoA 99.5 8.5E-13 1.8E-17 93.2 13.4 98 48-150 68-176 (234)
123 PRK00517 prmA ribosomal protei 99.5 5.9E-13 1.3E-17 95.0 12.5 92 47-150 118-211 (250)
124 PF02384 N6_Mtase: N-6 DNA Met 99.5 3.1E-13 6.6E-18 99.3 11.2 122 19-144 21-175 (311)
125 PRK13256 thiopurine S-methyltr 99.5 2.7E-13 5.9E-18 94.5 9.9 100 45-145 40-156 (226)
126 PF08242 Methyltransf_12: Meth 99.5 9.8E-15 2.1E-19 89.8 2.2 93 53-147 1-98 (99)
127 TIGR00563 rsmB ribosomal RNA s 99.5 9.6E-13 2.1E-17 100.5 13.4 108 45-152 235-371 (426)
128 PRK11727 23S rRNA mA1618 methy 99.5 5.1E-13 1.1E-17 97.7 10.8 81 48-128 114-204 (321)
129 smart00138 MeTrc Methyltransfe 99.5 7.1E-13 1.5E-17 95.2 11.0 104 48-151 99-241 (264)
130 COG2518 Pcm Protein-L-isoaspar 99.5 1.4E-12 3E-17 89.1 11.7 95 23-122 51-147 (209)
131 PRK05134 bifunctional 3-demeth 99.5 1.5E-12 3.3E-17 91.9 12.3 110 37-149 37-148 (233)
132 KOG1270 Methyltransferases [Co 99.5 7.3E-14 1.6E-18 97.5 5.4 97 49-150 90-193 (282)
133 COG2521 Predicted archaeal met 99.5 8.2E-14 1.8E-18 95.7 5.1 110 44-153 130-246 (287)
134 PRK00811 spermidine synthase; 99.5 1.4E-12 3E-17 94.6 11.3 105 48-152 76-191 (283)
135 KOG2904 Predicted methyltransf 99.5 1.1E-12 2.5E-17 92.1 10.3 95 30-125 131-234 (328)
136 COG2519 GCD14 tRNA(1-methylade 99.5 2E-12 4.4E-17 90.2 11.5 108 38-152 84-195 (256)
137 TIGR02716 C20_methyl_CrtF C-20 99.5 2.6E-12 5.6E-17 94.3 12.7 109 40-150 141-252 (306)
138 PF01596 Methyltransf_3: O-met 99.4 1E-12 2.2E-17 90.7 9.7 98 48-150 45-153 (205)
139 TIGR00755 ksgA dimethyladenosi 99.4 1.3E-12 2.8E-17 93.4 10.5 96 23-125 8-106 (253)
140 PF13489 Methyltransf_23: Meth 99.4 1.7E-12 3.6E-17 86.3 10.1 94 46-151 20-114 (161)
141 PF01135 PCMT: Protein-L-isoas 99.4 3.2E-12 7E-17 88.5 11.8 89 35-123 59-151 (209)
142 PF07021 MetW: Methionine bios 99.4 4.8E-13 1E-17 90.1 7.2 96 48-151 13-111 (193)
143 PLN02672 methionine S-methyltr 99.4 1.7E-12 3.7E-17 107.0 11.1 98 27-125 96-215 (1082)
144 PRK11783 rlmL 23S rRNA m(2)G24 99.4 2.7E-12 5.8E-17 103.3 11.8 96 32-127 173-317 (702)
145 PRK04338 N(2),N(2)-dimethylgua 99.4 3.7E-12 8.1E-17 95.6 11.9 114 31-150 39-158 (382)
146 PLN02476 O-methyltransferase 99.4 8.5E-12 1.8E-16 89.5 12.9 98 48-150 118-226 (278)
147 cd02440 AdoMet_MTases S-adenos 99.4 4.9E-12 1.1E-16 77.4 10.2 98 51-149 1-101 (107)
148 TIGR03438 probable methyltrans 99.4 5.6E-12 1.2E-16 92.2 12.1 102 48-149 63-174 (301)
149 KOG4300 Predicted methyltransf 99.4 3.6E-12 7.9E-17 86.2 10.0 94 50-145 78-175 (252)
150 PF10672 Methyltrans_SAM: S-ad 99.4 2E-12 4.4E-17 93.1 9.1 102 48-149 123-235 (286)
151 PRK13943 protein-L-isoaspartat 99.4 1.3E-11 2.9E-16 90.6 13.5 86 37-122 69-158 (322)
152 COG0030 KsgA Dimethyladenosine 99.4 4E-12 8.8E-17 89.9 10.4 99 22-126 8-108 (259)
153 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.3E-11 2.8E-16 86.4 13.0 102 45-149 36-140 (223)
154 PRK04457 spermidine synthase; 99.4 4.7E-12 1E-16 90.8 10.8 102 48-150 66-175 (262)
155 TIGR01983 UbiG ubiquinone bios 99.4 1.4E-11 3.1E-16 86.4 12.7 101 47-150 44-147 (224)
156 TIGR02081 metW methionine bios 99.4 5.2E-12 1.1E-16 86.9 10.2 92 48-147 13-107 (194)
157 PRK11088 rrmA 23S rRNA methylt 99.4 9.3E-12 2E-16 89.9 11.7 105 32-150 70-179 (272)
158 PF05724 TPMT: Thiopurine S-me 99.4 4.1E-12 8.9E-17 88.6 9.1 102 45-147 34-150 (218)
159 TIGR02987 met_A_Alw26 type II 99.4 3.8E-12 8.3E-17 99.6 9.6 105 22-126 2-125 (524)
160 TIGR00308 TRM1 tRNA(guanine-26 99.4 2E-11 4.3E-16 91.3 12.8 97 49-151 45-148 (374)
161 PF02475 Met_10: Met-10+ like- 99.4 9.5E-12 2.1E-16 85.4 10.2 93 47-145 100-195 (200)
162 KOG3191 Predicted N6-DNA-methy 99.4 3E-11 6.5E-16 80.2 11.9 79 48-126 43-123 (209)
163 COG4122 Predicted O-methyltran 99.3 3.3E-11 7.2E-16 83.4 12.0 100 47-151 58-166 (219)
164 PF08704 GCD14: tRNA methyltra 99.3 3.2E-11 7E-16 85.3 12.0 108 37-151 29-145 (247)
165 PRK11188 rrmJ 23S rRNA methylt 99.3 4.4E-11 9.6E-16 83.1 11.6 94 46-150 49-163 (209)
166 KOG0820 Ribosomal RNA adenine 99.3 2.2E-11 4.9E-16 85.6 10.1 90 35-126 45-136 (315)
167 PTZ00146 fibrillarin; Provisio 99.3 8.1E-11 1.7E-15 84.7 12.8 101 45-150 129-235 (293)
168 COG2520 Predicted methyltransf 99.3 3.9E-11 8.4E-16 88.1 11.2 97 48-150 188-287 (341)
169 TIGR00417 speE spermidine synt 99.3 5.6E-11 1.2E-15 85.8 11.9 105 48-152 72-186 (270)
170 PRK01581 speE spermidine synth 99.3 5.2E-11 1.1E-15 88.0 10.3 108 47-154 149-270 (374)
171 KOG2730 Methylase [General fun 99.3 7.1E-12 1.5E-16 85.5 5.2 98 25-126 74-178 (263)
172 PLN02589 caffeoyl-CoA O-methyl 99.3 1.8E-10 3.9E-15 81.6 12.4 98 48-150 79-188 (247)
173 PRK04148 hypothetical protein; 99.3 1.5E-10 3.2E-15 74.1 10.8 99 39-150 7-109 (134)
174 PLN02366 spermidine synthase 99.3 1.3E-10 2.7E-15 85.0 11.8 106 47-152 90-206 (308)
175 PRK03612 spermidine synthase; 99.3 7.2E-11 1.6E-15 92.2 10.9 106 47-152 296-415 (521)
176 TIGR00438 rrmJ cell division p 99.2 2E-10 4.3E-15 78.6 11.5 105 36-150 20-144 (188)
177 PF02390 Methyltransf_4: Putat 99.2 2E-10 4.3E-15 78.9 11.0 109 50-158 19-139 (195)
178 PF03291 Pox_MCEL: mRNA cappin 99.2 3.3E-11 7.1E-16 88.8 7.0 104 48-151 62-185 (331)
179 COG0220 Predicted S-adenosylme 99.2 2.3E-10 5.1E-15 80.0 10.8 110 49-158 49-170 (227)
180 KOG3010 Methyltransferase [Gen 99.2 3.7E-11 8E-16 83.1 6.4 100 51-154 36-140 (261)
181 PRK11933 yebU rRNA (cytosine-C 99.2 2.7E-10 5.9E-15 87.5 11.7 112 45-156 110-249 (470)
182 COG3963 Phospholipid N-methylt 99.2 1.5E-10 3.3E-15 75.9 8.3 130 11-148 14-152 (194)
183 PRK10742 putative methyltransf 99.2 3.2E-10 7E-15 79.6 10.5 87 40-127 78-178 (250)
184 PF05185 PRMT5: PRMT5 arginine 99.2 1.6E-10 3.4E-15 88.5 8.3 101 49-151 187-296 (448)
185 KOG1541 Predicted protein carb 99.1 3.7E-10 7.9E-15 77.4 8.3 110 31-145 31-153 (270)
186 KOG1500 Protein arginine N-met 99.1 9.1E-10 2E-14 79.9 10.0 82 40-122 169-252 (517)
187 PF00398 RrnaAD: Ribosomal RNA 99.1 4E-10 8.7E-15 81.0 7.9 95 24-124 10-108 (262)
188 KOG1975 mRNA cap methyltransfe 99.1 4.3E-10 9.3E-15 81.0 7.5 109 48-156 117-242 (389)
189 PLN02823 spermine synthase 99.0 4.7E-09 1E-13 77.6 11.6 106 48-153 103-221 (336)
190 COG0286 HsdM Type I restrictio 99.0 7.4E-10 1.6E-14 85.9 7.6 106 15-124 156-275 (489)
191 PF11599 AviRa: RRNA methyltra 99.0 1.5E-08 3.4E-13 69.2 12.8 138 13-150 13-213 (246)
192 PRK00050 16S rRNA m(4)C1402 me 99.0 1.4E-09 2.9E-14 79.0 8.1 86 36-122 7-99 (296)
193 PF10294 Methyltransf_16: Puta 99.0 1E-08 2.2E-13 69.3 11.3 102 46-151 43-157 (173)
194 KOG1499 Protein arginine N-met 99.0 2.7E-09 5.8E-14 77.8 8.9 74 46-120 58-134 (346)
195 PF05891 Methyltransf_PK: AdoM 99.0 1.9E-09 4.1E-14 74.2 7.4 104 48-151 55-160 (218)
196 KOG2899 Predicted methyltransf 99.0 4.2E-09 9.1E-14 73.2 8.7 105 45-150 55-207 (288)
197 COG0144 Sun tRNA and rRNA cyto 99.0 8.1E-09 1.8E-13 77.2 10.8 113 44-156 152-295 (355)
198 KOG2671 Putative RNA methylase 99.0 6.7E-10 1.5E-14 80.6 4.6 92 30-126 194-297 (421)
199 TIGR00478 tly hemolysin TlyA f 99.0 7.6E-09 1.6E-13 72.6 9.6 40 47-86 74-113 (228)
200 KOG2361 Predicted methyltransf 99.0 3E-09 6.6E-14 73.8 6.9 126 25-151 49-182 (264)
201 PF05971 Methyltransf_10: Prot 98.9 5.5E-09 1.2E-13 75.6 8.4 80 49-128 103-192 (299)
202 COG4076 Predicted RNA methylas 98.9 2.2E-09 4.8E-14 71.9 5.4 93 49-143 33-126 (252)
203 PRK01544 bifunctional N5-gluta 98.9 2.4E-08 5.2E-13 77.9 11.5 111 47-157 346-467 (506)
204 COG0421 SpeE Spermidine syntha 98.9 5.1E-08 1.1E-12 70.4 12.3 102 49-150 77-189 (282)
205 PF01739 CheR: CheR methyltran 98.9 4.6E-08 9.9E-13 67.2 11.2 125 27-151 6-174 (196)
206 PF00891 Methyltransf_2: O-met 98.9 3.9E-08 8.5E-13 69.8 11.2 97 41-145 93-190 (241)
207 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 1.7E-08 3.6E-13 73.3 9.4 120 31-153 71-223 (283)
208 PF09243 Rsm22: Mitochondrial 98.9 4.9E-08 1.1E-12 70.6 10.9 125 27-151 12-140 (274)
209 PF02527 GidB: rRNA small subu 98.8 1.2E-07 2.5E-12 64.6 11.2 140 5-151 4-147 (184)
210 PF08123 DOT1: Histone methyla 98.8 7E-08 1.5E-12 66.7 10.2 117 31-150 25-156 (205)
211 PF01564 Spermine_synth: Sperm 98.8 4.2E-08 9.2E-13 69.8 8.9 104 48-151 76-190 (246)
212 COG3897 Predicted methyltransf 98.8 1.8E-08 3.8E-13 68.0 6.5 92 46-139 77-169 (218)
213 PF12147 Methyltransf_20: Puta 98.8 2.6E-07 5.7E-12 66.2 12.4 105 47-151 134-248 (311)
214 KOG1663 O-methyltransferase [S 98.8 1.6E-07 3.5E-12 65.0 11.0 119 24-151 53-183 (237)
215 PRK00536 speE spermidine synth 98.8 1.4E-07 3.1E-12 67.4 11.1 99 46-154 70-173 (262)
216 KOG1661 Protein-L-isoaspartate 98.8 9E-08 1.9E-12 65.3 8.9 88 31-120 67-169 (237)
217 KOG2915 tRNA(1-methyladenosine 98.8 3.2E-07 7E-12 65.0 11.9 86 38-123 95-187 (314)
218 PF04816 DUF633: Family of unk 98.8 4.8E-08 1E-12 67.5 7.7 100 52-155 1-105 (205)
219 COG0357 GidB Predicted S-adeno 98.8 1.8E-07 3.8E-12 64.9 10.4 115 5-120 23-142 (215)
220 COG4976 Predicted methyltransf 98.7 4.7E-09 1E-13 72.4 1.4 96 48-150 125-223 (287)
221 PF01861 DUF43: Protein of unk 98.7 7.3E-07 1.6E-11 62.4 12.1 127 20-151 17-150 (243)
222 PF05219 DREV: DREV methyltran 98.7 2.5E-07 5.5E-12 65.3 8.8 86 48-144 94-180 (265)
223 PF13679 Methyltransf_32: Meth 98.6 4.9E-07 1.1E-11 59.1 9.5 91 46-140 23-122 (141)
224 PLN02232 ubiquinone biosynthes 98.6 1.6E-07 3.5E-12 62.7 7.3 74 75-150 1-79 (160)
225 COG1352 CheR Methylase of chem 98.6 1E-06 2.3E-11 63.2 11.6 126 25-150 70-239 (268)
226 PRK10611 chemotaxis methyltran 98.6 8.9E-07 1.9E-11 64.3 11.0 102 49-150 116-260 (287)
227 KOG2940 Predicted methyltransf 98.6 2.4E-07 5.3E-12 64.2 6.7 111 31-146 57-168 (325)
228 TIGR01444 fkbM_fam methyltrans 98.5 6.1E-07 1.3E-11 58.5 7.4 57 51-107 1-59 (143)
229 TIGR00006 S-adenosyl-methyltra 98.5 9.3E-07 2E-11 64.5 8.4 86 36-121 8-100 (305)
230 COG2384 Predicted SAM-dependen 98.5 4.5E-06 9.8E-11 57.6 11.2 100 48-151 16-120 (226)
231 PRK11760 putative 23S rRNA C24 98.5 2.7E-06 6E-11 62.6 10.7 69 47-122 210-279 (357)
232 PF04445 SAM_MT: Putative SAM- 98.5 7.5E-07 1.6E-11 62.4 7.3 76 50-126 77-164 (234)
233 PF06080 DUF938: Protein of un 98.5 2.1E-06 4.5E-11 59.0 9.2 102 49-150 26-140 (204)
234 KOG1122 tRNA and rRNA cytosine 98.4 3.4E-06 7.4E-11 63.2 9.7 82 44-125 237-324 (460)
235 cd00315 Cyt_C5_DNA_methylase C 98.4 3.2E-06 7E-11 61.3 9.0 71 51-126 2-75 (275)
236 COG3129 Predicted SAM-dependen 98.3 3.7E-06 8.1E-11 58.4 8.0 95 31-125 59-165 (292)
237 COG1867 TRM1 N2,N2-dimethylgua 98.3 8.6E-06 1.9E-10 60.3 9.5 96 49-150 53-152 (380)
238 COG4262 Predicted spermidine s 98.2 1.6E-05 3.4E-10 59.0 9.7 102 49-150 290-406 (508)
239 KOG4058 Uncharacterized conser 98.2 4E-06 8.7E-11 54.3 5.7 75 38-112 62-138 (199)
240 PF07942 N2227: N2227-like pro 98.2 1.1E-05 2.4E-10 57.9 8.5 114 34-150 38-200 (270)
241 KOG3178 Hydroxyindole-O-methyl 98.2 2.4E-05 5.2E-10 57.6 9.7 89 50-144 179-267 (342)
242 PF05148 Methyltransf_8: Hypot 98.2 1.5E-05 3.2E-10 54.9 8.0 105 22-150 51-156 (219)
243 PF01728 FtsJ: FtsJ-like methy 98.1 7.6E-06 1.6E-10 55.6 5.9 64 48-122 23-100 (181)
244 PF02005 TRM: N2,N2-dimethylgu 98.1 3E-05 6.5E-10 58.6 9.1 96 49-150 50-152 (377)
245 PRK11524 putative methyltransf 98.1 1.9E-05 4.1E-10 57.6 7.5 60 32-93 193-252 (284)
246 PF01269 Fibrillarin: Fibrilla 98.1 0.00015 3.3E-09 50.4 11.4 101 44-149 69-175 (229)
247 PF00145 DNA_methylase: C-5 cy 98.1 3.3E-05 7.3E-10 57.1 8.6 98 51-154 2-113 (335)
248 TIGR00497 hsdM type I restrict 98.1 2.8E-05 6E-10 61.0 8.4 102 22-125 193-305 (501)
249 PF03059 NAS: Nicotianamine sy 98.0 9.1E-05 2E-09 53.5 10.1 102 48-150 120-228 (276)
250 PHA01634 hypothetical protein 98.0 5.4E-05 1.2E-09 47.9 7.5 50 47-96 27-76 (156)
251 COG0500 SmtA SAM-dependent met 98.0 0.00029 6.2E-09 45.8 10.9 95 52-150 52-153 (257)
252 TIGR03439 methyl_EasF probable 98.0 0.00044 9.5E-09 51.2 12.5 97 48-144 76-189 (319)
253 PF01555 N6_N4_Mtase: DNA meth 97.9 4.1E-05 8.8E-10 53.6 6.9 42 47-89 190-231 (231)
254 COG1189 Predicted rRNA methyla 97.9 5.2E-05 1.1E-09 53.1 6.6 86 35-124 66-155 (245)
255 KOG2352 Predicted spermine/spe 97.9 0.00038 8.3E-09 53.5 11.5 100 51-150 51-160 (482)
256 PF07091 FmrO: Ribosomal RNA m 97.9 0.00011 2.3E-09 52.0 7.9 72 48-119 105-177 (251)
257 KOG3045 Predicted RNA methylas 97.9 9.3E-05 2E-09 52.5 7.5 83 47-150 179-264 (325)
258 PRK13699 putative methylase; P 97.9 8.1E-05 1.8E-09 52.5 7.4 58 35-94 151-208 (227)
259 TIGR00675 dcm DNA-methyltransf 97.9 9.8E-05 2.1E-09 54.6 8.0 96 52-152 1-109 (315)
260 COG1889 NOP1 Fibrillarin-like 97.9 0.00041 8.8E-09 47.6 10.1 102 44-150 72-178 (231)
261 PF03141 Methyltransf_29: Puta 97.9 3.9E-05 8.4E-10 59.0 5.9 93 50-151 119-218 (506)
262 KOG0821 Predicted ribosomal RN 97.8 0.00014 3E-09 50.5 7.7 105 36-141 38-156 (326)
263 KOG1269 SAM-dependent methyltr 97.8 4.9E-05 1.1E-09 57.0 5.9 103 46-150 108-213 (364)
264 PF01795 Methyltransf_5: MraW 97.8 6.9E-05 1.5E-09 54.9 6.4 86 36-121 8-101 (310)
265 COG1568 Predicted methyltransf 97.8 3.9E-05 8.5E-10 54.8 4.6 135 4-143 105-248 (354)
266 COG0293 FtsJ 23S rRNA methylas 97.8 0.00014 3.1E-09 50.0 7.1 78 35-122 32-120 (205)
267 COG0270 Dcm Site-specific DNA 97.8 0.00034 7.4E-09 52.1 9.3 74 49-126 3-80 (328)
268 COG0275 Predicted S-adenosylme 97.7 0.00036 7.8E-09 50.6 8.4 86 35-120 10-103 (314)
269 KOG2912 Predicted DNA methylas 97.7 0.00013 2.8E-09 53.2 6.0 75 52-126 106-191 (419)
270 PF06962 rRNA_methylase: Putat 97.6 0.00047 1E-08 44.7 7.2 72 73-144 1-84 (140)
271 KOG1501 Arginine N-methyltrans 97.6 0.00016 3.5E-09 54.9 5.7 92 51-142 69-164 (636)
272 KOG2198 tRNA cytosine-5-methyl 97.6 0.0014 3E-08 48.9 10.1 107 45-151 152-298 (375)
273 PF13578 Methyltransf_24: Meth 97.5 5.7E-05 1.2E-09 46.7 1.7 95 53-151 1-104 (106)
274 PRK10458 DNA cytosine methylas 97.5 0.0014 3E-08 51.0 9.4 77 49-126 88-182 (467)
275 KOG1227 Putative methyltransfe 97.5 6.5E-05 1.4E-09 54.3 1.9 72 48-119 194-268 (351)
276 KOG1331 Predicted methyltransf 97.4 0.00011 2.4E-09 52.7 2.6 91 48-147 45-138 (293)
277 PF10237 N6-adenineMlase: Prob 97.4 0.0027 5.8E-08 42.4 8.9 89 24-123 3-96 (162)
278 COG5459 Predicted rRNA methyla 97.4 0.00075 1.6E-08 50.1 6.8 126 30-155 95-229 (484)
279 KOG3987 Uncharacterized conser 97.3 2.2E-05 4.7E-10 53.9 -1.8 86 47-143 111-197 (288)
280 KOG3115 Methyltransferase-like 97.3 0.00042 9.2E-09 47.5 4.3 62 49-110 61-131 (249)
281 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.00071 1.5E-08 48.5 4.6 105 46-150 54-197 (256)
282 PF07757 AdoMet_MTase: Predict 97.2 0.001 2.2E-08 40.9 4.5 50 31-81 41-90 (112)
283 KOG0822 Protein kinase inhibit 97.1 0.0017 3.7E-08 50.6 5.8 100 49-150 368-476 (649)
284 KOG1562 Spermidine synthase [A 97.0 0.0023 4.9E-08 46.5 5.6 107 46-152 119-236 (337)
285 KOG1709 Guanidinoacetate methy 96.9 0.0081 1.7E-07 41.8 7.5 103 47-151 100-206 (271)
286 PF04989 CmcI: Cephalosporin h 96.9 0.0098 2.1E-07 41.2 7.7 100 48-152 32-147 (206)
287 KOG2078 tRNA modification enzy 96.8 0.00095 2.1E-08 50.6 2.3 62 47-109 248-312 (495)
288 PF02636 Methyltransf_28: Puta 96.7 0.015 3.3E-07 41.6 8.0 45 49-93 19-72 (252)
289 PF11968 DUF3321: Putative met 96.7 0.0059 1.3E-07 42.5 5.4 98 30-143 29-135 (219)
290 KOG2798 Putative trehalase [Ca 96.6 0.0091 2E-07 43.8 6.2 114 33-149 131-293 (369)
291 KOG2360 Proliferation-associat 96.5 0.01 2.2E-07 44.7 6.0 82 44-125 209-296 (413)
292 KOG3350 Uncharacterized conser 96.4 0.15 3.3E-06 34.5 10.5 118 19-150 46-171 (217)
293 KOG4589 Cell division protein 96.4 0.0032 6.9E-08 42.8 2.7 65 47-122 68-145 (232)
294 KOG2793 Putative N2,N2-dimethy 96.3 0.065 1.4E-06 38.3 8.9 43 49-92 87-129 (248)
295 COG1565 Uncharacterized conser 96.2 0.047 1E-06 40.9 8.1 71 25-95 47-133 (370)
296 COG2961 ComJ Protein involved 96.2 0.22 4.7E-06 35.6 11.0 114 30-151 74-195 (279)
297 KOG2651 rRNA adenine N-6-methy 96.1 0.028 6.1E-07 42.4 6.7 42 48-89 153-194 (476)
298 KOG1253 tRNA methyltransferase 96.1 0.0065 1.4E-07 47.0 3.2 91 48-144 109-208 (525)
299 PF04378 RsmJ: Ribosomal RNA s 96.0 0.062 1.3E-06 38.4 7.8 95 53-151 62-164 (245)
300 COG0863 DNA modification methy 95.9 0.056 1.2E-06 39.5 7.6 57 36-94 211-267 (302)
301 COG4798 Predicted methyltransf 95.9 0.083 1.8E-06 36.4 7.5 107 44-150 44-165 (238)
302 PF02254 TrkA_N: TrkA-N domain 95.7 0.023 5E-07 35.4 4.4 60 57-122 4-71 (116)
303 PF04672 Methyltransf_19: S-ad 95.5 0.29 6.2E-06 35.4 9.6 101 50-150 70-188 (267)
304 PF03686 UPF0146: Uncharacteri 95.4 0.058 1.2E-06 34.4 5.1 84 49-149 14-101 (127)
305 PF02086 MethyltransfD12: D12 95.4 0.044 9.5E-07 39.2 5.2 52 36-88 8-59 (260)
306 PRK11524 putative methyltransf 95.4 0.029 6.3E-07 41.0 4.3 52 97-148 8-76 (284)
307 KOG2920 Predicted methyltransf 95.3 0.028 6E-07 40.7 3.8 40 46-85 114-153 (282)
308 KOG3201 Uncharacterized conser 95.2 0.014 3.1E-07 38.8 2.1 104 39-144 20-132 (201)
309 PRK13699 putative methylase; P 95.0 0.03 6.5E-07 39.6 3.4 52 98-149 2-69 (227)
310 COG1255 Uncharacterized protei 94.9 0.51 1.1E-05 29.6 8.2 86 50-151 15-103 (129)
311 KOG1596 Fibrillarin and relate 94.9 0.15 3.3E-06 36.3 6.5 88 47-143 155-252 (317)
312 KOG2352 Predicted spermine/spe 94.9 0.023 5.1E-07 44.0 2.6 102 48-150 295-415 (482)
313 COG1064 AdhP Zn-dependent alco 94.7 0.67 1.5E-05 34.8 9.8 85 44-143 162-250 (339)
314 KOG0024 Sorbitol dehydrogenase 94.6 0.11 2.4E-06 38.5 5.4 47 43-89 164-212 (354)
315 PTZ00357 methyltransferase; Pr 94.6 0.45 9.8E-06 39.1 9.0 91 51-143 703-822 (1072)
316 KOG1201 Hydroxysteroid 17-beta 94.5 0.35 7.6E-06 35.5 7.7 74 47-122 36-123 (300)
317 PRK03659 glutathione-regulated 94.4 0.098 2.1E-06 42.4 5.3 87 57-154 406-500 (601)
318 PF07669 Eco57I: Eco57I restri 94.3 0.091 2E-06 32.5 3.9 32 113-144 2-45 (106)
319 COG2933 Predicted SAM-dependen 94.1 0.23 5E-06 35.9 5.9 69 47-122 210-279 (358)
320 PF10354 DUF2431: Domain of un 94.0 0.34 7.5E-06 32.5 6.5 99 55-153 3-128 (166)
321 KOG1098 Putative SAM-dependent 93.8 0.073 1.6E-06 42.7 3.4 36 46-81 42-79 (780)
322 COG4301 Uncharacterized conser 93.5 2 4.4E-05 31.0 10.4 104 47-150 77-191 (321)
323 PF03514 GRAS: GRAS domain fam 93.5 1.6 3.5E-05 33.3 10.1 107 48-154 110-247 (374)
324 PF05206 TRM13: Methyltransfer 93.5 0.52 1.1E-05 34.1 7.1 75 36-111 6-88 (259)
325 PRK12548 shikimate 5-dehydroge 93.3 2.1 4.5E-05 31.5 10.2 81 47-127 124-213 (289)
326 TIGR02356 adenyl_thiF thiazole 93.2 1.3 2.7E-05 30.8 8.4 91 48-143 20-136 (202)
327 PRK01747 mnmC bifunctional tRN 93.1 0.33 7.1E-06 39.8 6.2 102 48-149 57-203 (662)
328 PF11899 DUF3419: Protein of u 92.9 0.53 1.1E-05 36.0 6.6 47 45-92 32-78 (380)
329 PRK03562 glutathione-regulated 92.7 0.25 5.4E-06 40.2 5.0 88 50-151 401-497 (621)
330 cd01487 E1_ThiF_like E1_ThiF_l 92.6 2.1 4.6E-05 28.9 8.7 70 51-120 1-95 (174)
331 PF00106 adh_short: short chai 92.6 1.5 3.4E-05 28.7 8.0 74 51-125 2-92 (167)
332 PRK08217 fabG 3-ketoacyl-(acyl 92.4 1.7 3.7E-05 30.5 8.5 73 48-122 4-91 (253)
333 KOG0022 Alcohol dehydrogenase, 92.3 0.57 1.2E-05 34.8 5.8 47 44-90 188-236 (375)
334 PF01488 Shikimate_DH: Shikima 92.0 1.4 3.1E-05 28.3 7.1 79 44-126 7-88 (135)
335 TIGR00571 dam DNA adenine meth 92.0 0.27 5.9E-06 35.6 4.0 28 97-124 155-183 (266)
336 PF07279 DUF1442: Protein of u 92.0 3.1 6.7E-05 29.2 11.3 77 44-120 37-122 (218)
337 PRK12475 thiamine/molybdopteri 92.0 2.6 5.7E-05 31.8 9.3 72 48-119 23-122 (338)
338 PRK05866 short chain dehydroge 91.9 2.6 5.7E-05 30.8 9.1 74 48-123 39-127 (293)
339 PRK08213 gluconate 5-dehydroge 91.9 2.1 4.5E-05 30.4 8.5 74 48-123 11-99 (259)
340 PRK10669 putative cation:proto 91.9 0.53 1.1E-05 37.8 5.9 64 50-122 418-490 (558)
341 COG1063 Tdh Threonine dehydrog 91.8 0.56 1.2E-05 35.4 5.6 84 48-144 168-261 (350)
342 cd08283 FDH_like_1 Glutathione 91.2 0.71 1.5E-05 35.1 5.8 46 45-90 181-228 (386)
343 PRK08644 thiamine biosynthesis 91.1 3.3 7.2E-05 29.0 8.6 72 48-119 27-123 (212)
344 PRK14851 hypothetical protein; 91.1 1.1 2.3E-05 37.1 6.9 72 48-119 42-139 (679)
345 PRK05876 short chain dehydroge 91.0 2.4 5.3E-05 30.6 8.2 74 48-123 5-93 (275)
346 PRK05867 short chain dehydroge 90.8 2.4 5.2E-05 30.0 7.9 75 48-123 8-96 (253)
347 PF03141 Methyltransf_29: Puta 90.7 1.1 2.3E-05 35.4 6.2 121 26-152 339-467 (506)
348 PRK07791 short chain dehydroge 90.5 4.4 9.4E-05 29.5 9.1 75 48-123 5-102 (286)
349 PRK08339 short chain dehydroge 90.5 3.1 6.8E-05 29.8 8.3 74 48-122 7-94 (263)
350 PRK06124 gluconate 5-dehydroge 90.4 3.2 7E-05 29.3 8.3 75 47-123 9-98 (256)
351 PRK07688 thiamine/molybdopteri 90.4 3.7 7.9E-05 31.0 8.8 96 48-148 23-147 (339)
352 PRK06172 short chain dehydroge 90.4 3.1 6.6E-05 29.4 8.2 74 48-123 6-94 (253)
353 cd00757 ThiF_MoeB_HesA_family 90.4 3.3 7.1E-05 29.2 8.2 91 48-143 20-136 (228)
354 PF05050 Methyltransf_21: Meth 90.4 0.76 1.7E-05 30.1 4.7 37 54-90 1-42 (167)
355 PRK05597 molybdopterin biosynt 90.4 4.5 9.8E-05 30.7 9.3 73 48-120 27-125 (355)
356 PRK06125 short chain dehydroge 90.0 3.6 7.7E-05 29.2 8.2 73 48-122 6-90 (259)
357 PRK09291 short chain dehydroge 90.0 2.6 5.7E-05 29.7 7.5 72 50-123 3-83 (257)
358 PRK07063 short chain dehydroge 89.9 4 8.6E-05 29.0 8.4 73 48-122 6-95 (260)
359 PRK07890 short chain dehydroge 89.8 3.8 8.2E-05 29.0 8.2 73 48-122 4-91 (258)
360 PRK09496 trkA potassium transp 89.8 2.8 6.1E-05 32.6 8.1 69 48-122 230-306 (453)
361 PRK08862 short chain dehydroge 89.7 3.5 7.6E-05 28.9 7.8 73 48-121 4-91 (227)
362 KOG2539 Mitochondrial/chloropl 89.7 1.5 3.2E-05 34.3 6.1 114 30-143 182-305 (491)
363 PRK07102 short chain dehydroge 89.6 3.4 7.3E-05 29.0 7.8 71 50-122 2-85 (243)
364 PRK05854 short chain dehydroge 89.6 3.6 7.9E-05 30.4 8.2 74 48-123 13-103 (313)
365 cd05564 PTS_IIB_chitobiose_lic 89.6 0.67 1.5E-05 28.1 3.6 39 85-123 17-56 (96)
366 COG1743 Adenine-specific DNA m 89.6 0.6 1.3E-05 38.7 4.2 44 47-91 89-132 (875)
367 PRK08223 hypothetical protein; 89.5 1.6 3.4E-05 32.1 6.0 93 48-143 26-144 (287)
368 PRK07109 short chain dehydroge 89.5 4.3 9.2E-05 30.4 8.6 74 48-123 7-95 (334)
369 PRK07677 short chain dehydroge 89.4 3.9 8.4E-05 28.9 8.0 71 50-122 2-87 (252)
370 PRK06194 hypothetical protein; 89.3 3.7 8.1E-05 29.6 8.0 74 48-123 5-93 (287)
371 KOG0919 C-5 cytosine-specific 89.0 1 2.2E-05 32.3 4.5 91 49-143 3-107 (338)
372 PRK07097 gluconate 5-dehydroge 89.0 4.8 0.0001 28.7 8.3 75 48-123 9-97 (265)
373 PRK07035 short chain dehydroge 89.0 4.6 0.0001 28.4 8.2 75 48-123 7-95 (252)
374 PRK07904 short chain dehydroge 88.9 3.7 8.1E-05 29.2 7.6 74 48-122 7-96 (253)
375 PRK07478 short chain dehydroge 88.6 5.5 0.00012 28.2 8.3 74 48-123 5-93 (254)
376 PRK06139 short chain dehydroge 88.6 4.6 9.9E-05 30.2 8.1 74 48-123 6-94 (330)
377 COG0338 Dam Site-specific DNA 88.3 1 2.3E-05 32.8 4.4 42 81-126 144-187 (274)
378 cd01492 Aos1_SUMO Ubiquitin ac 88.2 6.6 0.00014 27.1 9.4 91 48-143 20-135 (197)
379 PRK05808 3-hydroxybutyryl-CoA 88.1 8.2 0.00018 28.1 9.2 95 51-153 5-119 (282)
380 COG5379 BtaA S-adenosylmethion 88.0 2.1 4.6E-05 31.7 5.7 45 48-93 63-107 (414)
381 PRK07814 short chain dehydroge 87.8 6.1 0.00013 28.2 8.2 73 48-122 9-96 (263)
382 PRK07523 gluconate 5-dehydroge 87.8 6 0.00013 28.0 8.1 74 48-123 9-97 (255)
383 PRK08703 short chain dehydroge 87.8 7.5 0.00016 27.2 9.0 58 48-107 5-67 (239)
384 PRK06113 7-alpha-hydroxysteroi 87.7 6 0.00013 28.0 8.1 74 48-123 10-98 (255)
385 PRK07454 short chain dehydroge 87.7 6.7 0.00014 27.4 8.2 73 49-123 6-93 (241)
386 PRK05872 short chain dehydroge 87.4 6.9 0.00015 28.6 8.4 73 48-123 8-95 (296)
387 KOG3924 Putative protein methy 87.2 1.4 2.9E-05 33.8 4.5 92 31-122 175-281 (419)
388 PRK12939 short chain dehydroge 87.1 8.3 0.00018 27.0 8.5 73 48-122 6-93 (250)
389 COG0569 TrkA K+ transport syst 87.1 5.3 0.00011 28.2 7.3 67 51-122 2-75 (225)
390 PRK07453 protochlorophyllide o 87.0 4.8 0.0001 29.8 7.4 73 48-122 5-92 (322)
391 PLN03209 translocon at the inn 86.9 4.9 0.00011 32.6 7.7 74 47-122 78-168 (576)
392 PRK10904 DNA adenine methylase 86.8 1.2 2.6E-05 32.4 4.0 28 97-124 157-185 (271)
393 PRK06196 oxidoreductase; Provi 86.8 11 0.00023 27.9 9.4 70 48-123 25-109 (315)
394 PRK08589 short chain dehydroge 86.7 7.9 0.00017 27.8 8.3 73 48-123 5-92 (272)
395 PRK06197 short chain dehydroge 86.6 11 0.00023 27.7 10.0 73 48-122 15-104 (306)
396 PRK01438 murD UDP-N-acetylmura 86.6 8.2 0.00018 30.4 8.9 71 48-123 15-88 (480)
397 PRK08762 molybdopterin biosynt 86.5 3.1 6.8E-05 31.8 6.3 72 48-119 134-231 (376)
398 TIGR03206 benzo_BadH 2-hydroxy 86.5 8.3 0.00018 27.0 8.2 74 48-123 2-90 (250)
399 PRK08277 D-mannonate oxidoredu 86.5 7.4 0.00016 27.9 8.1 73 48-122 9-96 (278)
400 PRK08643 acetoin reductase; Va 86.5 7.7 0.00017 27.4 8.1 72 50-123 3-89 (256)
401 PRK14106 murD UDP-N-acetylmura 86.2 6.1 0.00013 30.8 8.0 72 48-123 4-78 (450)
402 COG1062 AdhC Zn-dependent alco 86.2 3.5 7.7E-05 31.1 6.2 50 41-90 178-229 (366)
403 cd01488 Uba3_RUB Ubiquitin act 86.0 5.5 0.00012 29.4 7.1 69 51-119 1-94 (291)
404 PRK12826 3-ketoacyl-(acyl-carr 86.0 9.6 0.00021 26.6 8.4 74 48-123 5-93 (251)
405 KOG2782 Putative SAM dependent 85.6 1.6 3.4E-05 30.9 3.8 60 33-92 28-88 (303)
406 PRK09880 L-idonate 5-dehydroge 85.4 4.3 9.3E-05 30.3 6.5 45 45-89 166-212 (343)
407 PRK09260 3-hydroxybutyryl-CoA 85.4 8.9 0.00019 28.0 8.0 39 51-90 3-43 (288)
408 PRK08328 hypothetical protein; 85.3 5.3 0.00012 28.3 6.6 33 48-80 26-60 (231)
409 PRK09242 tropinone reductase; 85.3 9.2 0.0002 27.0 8.0 74 48-123 8-98 (257)
410 PRK09424 pntA NAD(P) transhydr 85.3 3.1 6.8E-05 33.2 5.9 42 47-89 163-206 (509)
411 PRK08293 3-hydroxybutyryl-CoA 85.3 12 0.00027 27.3 9.4 98 50-154 4-122 (287)
412 PRK08303 short chain dehydroge 85.2 8.7 0.00019 28.3 8.0 72 48-121 7-103 (305)
413 PRK13394 3-hydroxybutyrate deh 85.2 9.5 0.00021 26.9 8.0 74 48-123 6-94 (262)
414 PRK07231 fabG 3-ketoacyl-(acyl 85.2 9.8 0.00021 26.6 8.1 73 48-123 4-91 (251)
415 PRK07062 short chain dehydroge 85.2 8.9 0.00019 27.3 7.9 74 48-123 7-97 (265)
416 cd01484 E1-2_like Ubiquitin ac 85.1 6.8 0.00015 27.9 7.0 88 51-143 1-116 (234)
417 KOG2811 Uncharacterized conser 85.1 5.3 0.00011 30.5 6.6 60 49-108 183-246 (420)
418 PRK08085 gluconate 5-dehydroge 85.0 10 0.00022 26.8 8.1 74 48-123 8-96 (254)
419 KOG0725 Reductases with broad 85.0 13 0.00028 27.1 11.1 76 47-123 6-99 (270)
420 COG1748 LYS9 Saccharopine dehy 84.9 4 8.7E-05 31.4 6.1 71 50-123 2-78 (389)
421 PRK06949 short chain dehydroge 84.9 11 0.00023 26.7 8.1 74 47-122 7-95 (258)
422 PLN02780 ketoreductase/ oxidor 84.9 7 0.00015 29.1 7.4 59 48-107 52-115 (320)
423 PF02719 Polysacc_synt_2: Poly 84.8 2.1 4.5E-05 31.6 4.4 72 55-126 3-90 (293)
424 PRK07576 short chain dehydroge 84.8 11 0.00023 27.0 8.1 73 48-122 8-95 (264)
425 PRK05690 molybdopterin biosynt 84.7 5.1 0.00011 28.7 6.3 72 48-119 31-128 (245)
426 TIGR00027 mthyl_TIGR00027 meth 84.7 13 0.00028 26.9 9.3 109 33-143 66-188 (260)
427 PF03721 UDPG_MGDP_dh_N: UDP-g 84.5 1.3 2.8E-05 30.3 3.1 37 52-89 3-41 (185)
428 cd00755 YgdL_like Family of ac 84.5 12 0.00027 26.6 8.1 33 48-80 10-44 (231)
429 PRK09072 short chain dehydroge 84.2 11 0.00024 26.8 8.0 73 48-123 4-90 (263)
430 PRK07024 short chain dehydroge 84.2 8.1 0.00017 27.4 7.3 71 50-123 3-88 (257)
431 cd01493 APPBP1_RUB Ubiquitin a 84.0 16 0.00035 28.6 9.1 72 48-121 19-120 (425)
432 PRK06720 hypothetical protein; 83.8 11 0.00023 25.3 8.2 75 48-123 15-103 (169)
433 PRK07417 arogenate dehydrogena 83.7 8.2 0.00018 28.1 7.2 85 51-149 2-88 (279)
434 PRK05786 fabG 3-ketoacyl-(acyl 83.6 12 0.00027 25.9 8.0 72 48-122 4-90 (238)
435 PRK06181 short chain dehydroge 83.5 12 0.00026 26.5 8.0 71 50-122 2-87 (263)
436 PRK09496 trkA potassium transp 83.5 10 0.00022 29.5 8.1 64 52-122 3-74 (453)
437 cd01483 E1_enzyme_family Super 83.4 9.6 0.00021 24.5 8.4 70 51-120 1-96 (143)
438 PRK06935 2-deoxy-D-gluconate 3 83.4 14 0.00029 26.2 8.3 73 48-123 14-101 (258)
439 PRK08340 glucose-1-dehydrogena 83.3 10 0.00022 26.9 7.5 70 51-123 2-86 (259)
440 PRK07066 3-hydroxybutyryl-CoA 83.3 14 0.00031 27.7 8.3 98 50-154 8-121 (321)
441 PRK05650 short chain dehydroge 83.2 12 0.00027 26.7 8.0 71 51-123 2-87 (270)
442 PRK07792 fabG 3-ketoacyl-(acyl 83.2 13 0.00028 27.4 8.2 76 47-123 10-99 (306)
443 COG3510 CmcI Cephalosporin hyd 83.1 5.1 0.00011 27.8 5.4 59 48-110 69-132 (237)
444 PRK12429 3-hydroxybutyrate deh 83.0 14 0.0003 26.0 8.2 74 48-123 3-91 (258)
445 PLN02668 indole-3-acetate carb 82.7 0.98 2.1E-05 34.6 2.1 18 49-66 64-81 (386)
446 PLN02989 cinnamyl-alcohol dehy 82.5 9.1 0.0002 28.2 7.2 73 48-122 4-86 (325)
447 PRK07666 fabG 3-ketoacyl-(acyl 82.5 14 0.0003 25.7 8.1 74 48-123 6-94 (239)
448 PRK06914 short chain dehydroge 82.4 14 0.00031 26.5 8.0 73 49-123 3-91 (280)
449 PRK05855 short chain dehydroge 82.3 12 0.00027 29.8 8.3 74 48-123 314-402 (582)
450 PRK05653 fabG 3-ketoacyl-(acyl 82.1 14 0.00031 25.6 7.9 73 48-122 4-91 (246)
451 PRK05600 thiamine biosynthesis 82.0 21 0.00045 27.4 9.3 91 48-143 40-156 (370)
452 COG4627 Uncharacterized protei 81.9 0.11 2.3E-06 34.5 -2.8 46 113-158 47-92 (185)
453 PRK08267 short chain dehydroge 81.9 11 0.00025 26.6 7.3 69 51-123 3-87 (260)
454 PRK12481 2-deoxy-D-gluconate 3 81.8 13 0.00027 26.4 7.5 72 48-123 7-93 (251)
455 PRK06701 short chain dehydroge 81.6 16 0.00035 26.6 8.1 75 47-123 44-134 (290)
456 KOG1205 Predicted dehydrogenas 81.4 17 0.00037 26.8 7.9 77 48-125 11-103 (282)
457 PRK15116 sulfur acceptor prote 81.3 11 0.00023 27.6 6.8 33 48-80 29-63 (268)
458 cd01065 NAD_bind_Shikimate_DH 81.3 12 0.00026 24.2 9.3 72 47-124 17-92 (155)
459 PRK08945 putative oxoacyl-(acy 81.2 15 0.00033 25.7 7.7 74 47-122 10-101 (247)
460 PRK12829 short chain dehydroge 80.8 17 0.00037 25.6 8.2 73 47-123 9-96 (264)
461 PF01210 NAD_Gly3P_dh_N: NAD-d 80.7 10 0.00022 25.0 6.2 85 52-145 2-96 (157)
462 TIGR02415 23BDH acetoin reduct 80.5 17 0.00037 25.5 7.9 71 51-123 2-87 (254)
463 cd08237 ribitol-5-phosphate_DH 80.4 5.9 0.00013 29.6 5.6 44 46-89 161-207 (341)
464 COG0300 DltE Short-chain dehyd 80.2 20 0.00044 26.1 10.4 79 48-127 5-98 (265)
465 PRK08415 enoyl-(acyl carrier p 80.1 15 0.00033 26.6 7.5 74 48-123 4-93 (274)
466 PF11312 DUF3115: Protein of u 80.1 3.3 7.3E-05 30.8 4.0 100 50-150 88-240 (315)
467 COG0771 MurD UDP-N-acetylmuram 80.1 8.1 0.00017 30.4 6.2 74 48-125 6-81 (448)
468 PRK03369 murD UDP-N-acetylmura 79.8 12 0.00027 29.7 7.4 69 48-124 11-81 (488)
469 TIGR03366 HpnZ_proposed putati 79.8 11 0.00024 27.2 6.7 45 45-89 117-163 (280)
470 PRK06153 hypothetical protein; 79.8 11 0.00023 29.1 6.7 33 48-80 175-209 (393)
471 PF03492 Methyltransf_7: SAM d 79.7 2.9 6.4E-05 31.4 3.7 79 48-126 16-120 (334)
472 PRK07819 3-hydroxybutyryl-CoA 79.6 7.2 0.00016 28.6 5.7 97 50-154 6-123 (286)
473 PRK07877 hypothetical protein; 79.6 17 0.00037 30.6 8.2 72 48-119 106-202 (722)
474 PRK06138 short chain dehydroge 79.6 18 0.0004 25.3 7.8 73 48-123 4-91 (252)
475 TIGR03201 dearomat_had 6-hydro 79.5 7.1 0.00015 29.2 5.8 44 45-89 163-208 (349)
476 PF12692 Methyltransf_17: S-ad 79.5 12 0.00026 24.8 5.9 47 33-80 14-61 (160)
477 PF13651 EcoRI_methylase: Aden 79.5 2.1 4.6E-05 31.9 2.8 33 113-150 135-167 (336)
478 PRK06130 3-hydroxybutyryl-CoA 79.4 23 0.00049 26.2 9.0 40 50-90 5-46 (311)
479 PRK08251 short chain dehydroge 79.4 19 0.00041 25.2 7.9 72 50-123 3-91 (248)
480 PRK07201 short chain dehydroge 79.2 18 0.0004 29.6 8.4 74 48-123 370-458 (657)
481 PRK12823 benD 1,6-dihydroxycyc 79.0 20 0.00043 25.3 7.9 72 48-122 7-93 (260)
482 PRK08265 short chain dehydroge 79.0 19 0.0004 25.7 7.6 71 48-123 5-90 (261)
483 PLN02740 Alcohol dehydrogenase 78.8 9.8 0.00021 28.9 6.4 46 44-89 194-241 (381)
484 PF03435 Saccharop_dh: Sacchar 78.8 11 0.00024 28.7 6.7 68 52-123 1-78 (386)
485 PRK14852 hypothetical protein; 78.6 22 0.00048 31.0 8.7 72 48-119 331-428 (989)
486 KOG2013 SMT3/SUMO-activating c 78.6 4.3 9.2E-05 32.1 4.3 72 48-119 11-109 (603)
487 PRK08628 short chain dehydroge 78.4 20 0.00043 25.3 7.6 73 48-123 6-93 (258)
488 PRK07326 short chain dehydroge 78.3 20 0.00043 24.9 8.0 71 48-121 5-90 (237)
489 COG3392 Adenine-specific DNA m 78.0 1.2 2.6E-05 32.3 1.2 48 101-148 191-238 (330)
490 PRK06200 2,3-dihydroxy-2,3-dih 78.0 18 0.0004 25.6 7.3 71 48-123 5-90 (263)
491 PLN02662 cinnamyl-alcohol dehy 78.0 15 0.00033 26.9 7.1 72 49-122 4-85 (322)
492 COG1086 Predicted nucleoside-d 77.9 13 0.00029 30.1 6.9 78 48-126 249-338 (588)
493 cd05188 MDR Medium chain reduc 77.8 14 0.00031 25.9 6.7 43 47-89 133-176 (271)
494 TIGR01963 PHB_DH 3-hydroxybuty 77.7 21 0.00046 25.0 7.9 70 51-122 3-87 (255)
495 KOG4174 Uncharacterized conser 77.7 24 0.00053 25.6 8.3 77 48-125 56-149 (282)
496 TIGR02818 adh_III_F_hyde S-(hy 77.7 13 0.00028 28.1 6.7 45 45-89 182-228 (368)
497 COG0338 Dam Site-specific DNA 77.3 1.4 3.1E-05 32.1 1.4 50 35-88 14-63 (274)
498 cd08281 liver_ADH_like1 Zinc-d 77.3 12 0.00027 28.2 6.5 45 45-89 188-234 (371)
499 cd00401 AdoHcyase S-adenosyl-L 76.9 13 0.00028 29.0 6.5 42 47-89 200-243 (413)
500 PLN02253 xanthoxin dehydrogena 76.9 23 0.00049 25.4 7.6 72 48-122 17-103 (280)
No 1
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2e-26 Score=152.78 Aligned_cols=154 Identities=43% Similarity=0.715 Sum_probs=139.4
Q ss_pred hhhhhhhhcccccccCCcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChH
Q 031325 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD 82 (161)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~ 82 (161)
+++++..++.++.|.+++..+++|.++...+..++..+. ..+...+.+|+|+|||||.+++..+-.|..+|+|+|++++
T Consensus 1 kk~Le~~l~kl~~f~~p~~~LEQY~Tp~~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~ 79 (198)
T COG2263 1 KKELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE 79 (198)
T ss_pred CchhhhhhhhhcCCCCCCccceecCCChHHHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH
Confidence 356778888999999999999999999999999988887 5577789999999999999999999999889999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCccccccc
Q 031325 83 SLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREVSRS 160 (161)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (161)
+++.+++|..+.+-++.++.+|+.++.. .+|.++.||||+...+..+..++..+.+... .+|.+++.++++|+++
T Consensus 80 a~ei~r~N~~~l~g~v~f~~~dv~~~~~--~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~-vVYsiH~a~~~~f~~~ 154 (198)
T COG2263 80 ALEIARANAEELLGDVEFVVADVSDFRG--KFDTVIMNPPFGSQRRHADRPFLLKALEISD-VVYSIHKAGSRDFVEK 154 (198)
T ss_pred HHHHHHHHHHhhCCceEEEEcchhhcCC--ccceEEECCCCccccccCCHHHHHHHHHhhh-eEEEeeccccHHHHHH
Confidence 9999999999854489999999998765 5899999999999988888999999999887 9999999999988764
No 2
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.3e-28 Score=152.91 Aligned_cols=159 Identities=55% Similarity=0.936 Sum_probs=148.3
Q ss_pred ChhhhhhhhhcccccccCCcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCC
Q 031325 1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID 80 (161)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~ 80 (161)
|+.+++++.+...+.|.+++...++|+++++++..|+..+-..++..+|++++|+|||.|-+.+..+..+...|+|+|++
T Consensus 1 m~~Kel~~~L~~v~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDId 80 (185)
T KOG3420|consen 1 MRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDID 80 (185)
T ss_pred CchHHHHHHHHHhccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecC
Confidence 77889999999999999999999999999999999999999999999999999999999999987777778899999999
Q ss_pred hHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCcccccc
Q 031325 81 SDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREVSR 159 (161)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (161)
|++++.+++|.+..++++++.++|+.++.+.. .||.++.||||+......+++++.......+ .+|.++.+++++++-
T Consensus 81 peALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGTk~~~aDm~fv~~al~~~~-~VySLHKtSTRey~~ 159 (185)
T KOG3420|consen 81 PEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGTKKKGADMEFVSAALKVAS-AVYSLHKTSTREYRY 159 (185)
T ss_pred HHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCcccccccHHHHHHHHHHHH-HHHHHhcccHHHHHH
Confidence 99999999999999999999999999977665 9999999999999999999999999998888 999999999998864
Q ss_pred c
Q 031325 160 S 160 (161)
Q Consensus 160 ~ 160 (161)
+
T Consensus 160 k 160 (185)
T KOG3420|consen 160 K 160 (185)
T ss_pred h
Confidence 3
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=1.3e-19 Score=126.53 Aligned_cols=102 Identities=25% Similarity=0.368 Sum_probs=90.2
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC-cccEEEECCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMNPPFG 124 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~D~i~~~~p~~ 124 (161)
+|.+|||+|||||.++..+++. +..+|+|+|+|+.|++.++++....+. +++++++|++.+|+++ +||++.+ .|+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~--~fg 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI--SFG 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe--eeh
Confidence 8899999999999999999986 567999999999999999999998877 6999999999999887 9999999 455
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
..+-....+.|+++.|++++++.+++.
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 555567779999999999977766664
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.81 E-value=3.8e-19 Score=125.02 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=78.7
Q ss_pred hhhhhhhhcccccccCCcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCC
Q 031325 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDID 80 (161)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~ 80 (161)
.+.++.+.+.+...+..-...-.+.....+.+.+++.. ...++.+|||+|||+|.++..+++. +..+|+|+|+|
T Consensus 6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s 81 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDIS 81 (233)
T ss_dssp -------------------------------SHHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-
T ss_pred HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCC
Confidence 34444455554443333222333333333444343332 3457889999999999999999886 24599999999
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEcccccccCCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+.|++.|+++.+..+. +++++++|+++++..+ +||+|++..-++ +-....+.++++.|++++++.+++
T Consensus 82 ~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr--n~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 82 PGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR--NFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG--G-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH--hhCCHHHHHHHHHHHcCCCeEEEE
Confidence 9999999999998877 8999999999998876 999999944444 445566999999999997666555
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.79 E-value=2.9e-18 Score=115.53 Aligned_cols=113 Identities=30% Similarity=0.421 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCC-CeEEEEeCChHHHHHHHHHHhhcCCc-eEEEEccccccc
Q 031325 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLE 109 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~ 109 (161)
.+..+++.+... ++.++||+|||+|.+++.+++... .+++++|+|+.+++.++++++.+++. +.++..|..+..
T Consensus 19 ~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~ 94 (170)
T PF05175_consen 19 GTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC
T ss_pred HHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc
Confidence 344555555544 677999999999999999999744 37999999999999999999999984 999999998866
Q ss_pred CCCcccEEEECCCCCCCCC---CcchHHHHHHHhhcCCcEEE
Q 031325 110 WRGHVDTVVMNPPFGTRKK---GVDMDFLSMALKVASQAVYS 148 (161)
Q Consensus 110 ~~~~~D~i~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~ 148 (161)
....||+|++|||++.... ....++++.+.+.|++++.+
T Consensus 95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 5459999999999876543 23457888999999854433
No 6
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.79 E-value=8.7e-18 Score=122.53 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=114.9
Q ss_pred hhhhhhhhcccccccCCcccccCCCCChhHHHHHHHH-HHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCCh
Q 031325 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYT-AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (161)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~ 81 (161)
+++++..+..+..|.+.++...+|.++.++...+... +.......++++|||+|||+|.++..++..+...|+|+|+|+
T Consensus 75 ~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~ 154 (314)
T TIGR00452 75 IKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV 154 (314)
T ss_pred HHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence 5678888999999999999999999999997777644 555556678899999999999999999888776899999999
Q ss_pred HHHHHHHHHHhhcC--CceEEEEcccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 82 DSLELASENAADLE--LDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 82 ~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
.++..++...+..+ .++.+..+++.+++....||+|+++..++|.. .....+.++.+.+++++.++
T Consensus 155 ~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 155 LFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred HHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEE
Confidence 99876543322211 26778888888876555899999998887754 33489999999998544444
No 7
>PHA03412 putative methyltransferase; Provisional
Probab=99.78 E-value=1.5e-17 Score=115.54 Aligned_cols=122 Identities=19% Similarity=0.351 Sum_probs=94.2
Q ss_pred CcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhc
Q 031325 19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADL 94 (161)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~----~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (161)
.....++|.||..++..+... . ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|+++..
T Consensus 26 ~~~~~GqFfTP~~iAr~~~i~---~---~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-- 97 (241)
T PHA03412 26 NNSELGAFFTPIGLARDFTID---A---CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-- 97 (241)
T ss_pred ccccCCccCCCHHHHHHHHHh---c---cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--
Confidence 466888999999998876422 1 13679999999999999998864 23499999999999999998864
Q ss_pred CCceEEEEcccccccCCCcccEEEECCCCCCCCCC----------cchHHHHHHHhhcCCcEEEEe
Q 031325 95 ELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG----------VDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 95 ~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 150 (161)
++.+..+|+.......+||+|++||||...... ....++..+.++++++..++.
T Consensus 98 --~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 98 --EATWINADALTTEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred --CCEEEEcchhcccccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 478999999776544489999999999854221 133578888888886666555
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=7.2e-18 Score=106.01 Aligned_cols=104 Identities=25% Similarity=0.325 Sum_probs=82.1
Q ss_pred CCCeEEEecCCcchHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccc-ccccCCCcccEEEECC-C
Q 031325 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI-RNLEWRGHVDTVVMNP-P 122 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~-~~~~~~~~~D~i~~~~-p 122 (161)
|+.+|||+|||+|.++..+++ .+..+++|+|+|+.+++.++++....+. +++++++|+ ........||+|+++. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 468999999999999999999 3556999999999999999999955544 899999999 4444444899999988 3
Q ss_pred CC-CCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 123 FG-TRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
++ ........++++.+.+.++++++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 22 222245558899999999876666543
No 9
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.77 E-value=9.9e-18 Score=123.83 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=93.2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 031325 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (161)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (161)
+..+..+...+...+.......++.+|+|+|||+|.++++++..+. .++|+|+++.+++.++.|++..++ ++.+..+|
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D 238 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGD 238 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecc
Confidence 3333333334444444443445788999999999999999888754 999999999999999999998887 67899999
Q ss_pred cccccCCC-cccEEEECCCCCCCCC-------CcchHHHHHHHhhcCCcEEE
Q 031325 105 IRNLEWRG-HVDTVVMNPPFGTRKK-------GVDMDFLSMALKVASQAVYS 148 (161)
Q Consensus 105 ~~~~~~~~-~~D~i~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 148 (161)
+.+++... .||+|++||||+.... ....++++.+.+.+++++.+
T Consensus 239 ~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~l 290 (329)
T TIGR01177 239 ATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWI 290 (329)
T ss_pred hhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEE
Confidence 99887644 8999999999986421 12467899999999754433
No 10
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.77 E-value=9.3e-18 Score=115.43 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=85.3
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~ 126 (161)
.++.+|||+|||+|.++..+++++. +|+|+|+|+.+++.++++....++++.+..+|+...+...+||+|+++.+|++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccC
Confidence 3567999999999999999999865 999999999999999998887777777888888665544489999999999887
Q ss_pred CCCcchHHHHHHHhhcCCcEE
Q 031325 127 KKGVDMDFLSMALKVASQAVY 147 (161)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~ 147 (161)
.......+++.+.+.++++++
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcE
Confidence 666667899999999986555
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.77 E-value=1.3e-17 Score=114.86 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=87.4
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCCcccEEEECCCCC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~i~~~~p~~ 124 (161)
..++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++++....++ ++++..+|+.+.+....||+|+++..++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLM 106 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchh
Confidence 33668999999999999999999865 999999999999999999888777 6889999998776555899999998888
Q ss_pred CCCCCcchHHHHHHHhhcCCcEE
Q 031325 125 TRKKGVDMDFLSMALKVASQAVY 147 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
+........+++.+.+.++++++
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcE
Confidence 77666677999999999986555
No 12
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.77 E-value=1.2e-17 Score=122.65 Aligned_cols=125 Identities=25% Similarity=0.431 Sum_probs=98.7
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 031325 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (161)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (161)
+..++.....+.+.+.......++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|+++++..++ +++++++|
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D 229 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALD 229 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Confidence 345566777777766665544467899999999999999999975 5999999999999999999999888 79999999
Q ss_pred cccccCC--CcccEEEECCCCCCCCCCcchHHHHHHHhhc-CCcEEEEeccCcc
Q 031325 105 IRNLEWR--GHVDTVVMNPPFGTRKKGVDMDFLSMALKVA-SQAVYSLHKTSTR 155 (161)
Q Consensus 105 ~~~~~~~--~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 155 (161)
+.++... ..||+|++|||. .+.....++.+.... +.++|+.|+..+.
T Consensus 230 ~~~~~~~~~~~~D~Vv~dPPr----~G~~~~~~~~l~~~~~~~ivyvsc~p~t~ 279 (315)
T PRK03522 230 STQFATAQGEVPDLVLVNPPR----RGIGKELCDYLSQMAPRFILYSSCNAQTM 279 (315)
T ss_pred HHHHHHhcCCCCeEEEECCCC----CCccHHHHHHHHHcCCCeEEEEECCcccc
Confidence 9876432 279999999993 444445555555544 3799999987763
No 13
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.76 E-value=1.9e-17 Score=112.41 Aligned_cols=129 Identities=17% Similarity=0.247 Sum_probs=97.9
Q ss_pred ccCCcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc
Q 031325 16 FSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL 94 (161)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (161)
.+++.+...+..++++................++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++++..
T Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~ 89 (181)
T TIGR00138 10 KWNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL 89 (181)
T ss_pred HHhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 345677788888877776655544443334446889999999999999998875 3458999999999999999999988
Q ss_pred CC-ceEEEEcccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 95 EL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 95 ~~-~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
++ +++++++|+.++....+||+|+++. ++ ....+++.+.+.+++++.++.
T Consensus 90 ~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~-----~~~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 90 GLNNVEIVNGRAEDFQHEEQFDVITSRA-LA-----SLNVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred CCCCeEEEecchhhccccCCccEEEehh-hh-----CHHHHHHHHHHhcCCCCEEEE
Confidence 87 7999999998875444899999976 32 223677888888874444443
No 14
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.76 E-value=8.4e-18 Score=106.55 Aligned_cols=101 Identities=34% Similarity=0.529 Sum_probs=81.2
Q ss_pred CCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccccccc--CC-CcccEEEECCCC
Q 031325 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE--WR-GHVDTVVMNPPF 123 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~-~~~D~i~~~~p~ 123 (161)
|.+|||+|||+|.++..+++.+..+++|+|+++..++.++.++...++ +++++++|..+.. .. .+||+|++||||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999988756999999999999999999999877 7999999998876 22 399999999999
Q ss_pred CCCC------CCcchHHHHHHHhhcCCcEEEE
Q 031325 124 GTRK------KGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 124 ~~~~------~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
.... ......+++.+.+.+++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEE
Confidence 8531 2234588999999998544433
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=116.45 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=86.0
Q ss_pred CCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC---cccEEEEC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG---HVDTVVMN 120 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~---~~D~i~~~ 120 (161)
....+|||+|||+|.+++.+|++ ...+++++|++++++++|+++++.+++ +++++++|+.++.... +||+|+||
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34789999999999999999998 547999999999999999999999888 8999999999976643 69999999
Q ss_pred CCCCCCCCC----------------cchHHHHHHHhhcCC--cEEEEe
Q 031325 121 PPFGTRKKG----------------VDMDFLSMALKVASQ--AVYSLH 150 (161)
Q Consensus 121 ~p~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~ 150 (161)
|||...... ....|++.+..+++. .+++++
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 999765322 244678888888873 444444
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.76 E-value=2.1e-17 Score=109.46 Aligned_cols=101 Identities=27% Similarity=0.423 Sum_probs=83.7
Q ss_pred CCCeEEEecCCcchHHHHHHH-c-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC--CcccEEEECCC
Q 031325 48 SNKVVADFGCGCGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR--GHVDTVVMNPP 122 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~-~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~--~~~D~i~~~~p 122 (161)
++.+|||+|||+|.++..+++ . +..+++|+|+|+.+++.|+++++..++ ++++.++|+.+++.. ..||+|+++++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 578999999999999999994 3 356999999999999999999998888 799999999997632 58999999999
Q ss_pred CCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 123 FGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+++.... ...++.+.+.+++.+.+++
T Consensus 83 l~~~~~~--~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 83 LHHFPDP--EKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp GGGTSHH--HHHHHHHHHHEEEEEEEEE
T ss_pred hhhccCH--HHHHHHHHHHcCCCcEEEE
Confidence 8765433 3889999999985444443
No 17
>PRK14967 putative methyltransferase; Provisional
Probab=99.74 E-value=8e-17 Score=113.02 Aligned_cols=105 Identities=28% Similarity=0.258 Sum_probs=83.2
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~ 124 (161)
...++.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++...+.++.++.+|+.+.....+||+|++||||.
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 44567899999999999999999876569999999999999999999888878889999997754334899999999997
Q ss_pred CCCCC-------------------cchHHHHHHHhhcCCcEEEE
Q 031325 125 TRKKG-------------------VDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 125 ~~~~~-------------------~~~~~~~~~~~~~~~~~~~~ 149 (161)
..... ....+++.+.+.+++++.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 54221 12356778888888544444
No 18
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=3e-17 Score=124.11 Aligned_cols=126 Identities=26% Similarity=0.428 Sum_probs=113.1
Q ss_pred cCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEE
Q 031325 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQ 102 (161)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~ 102 (161)
.-+..+....+.|...+.......++.+++|+-||.|.+++.+|+. ..+|+|+|+++.+++.|++|++.+++ |+.+..
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~ 347 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIA 347 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 4455778899999999999988888899999999999999999986 55999999999999999999999999 899999
Q ss_pred cccccccCCC----cccEEEECCCCCCCCCCcchHHHHHHHhhcC-CcEEEEeccCc
Q 031325 103 CDIRNLEWRG----HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 154 (161)
Q Consensus 103 ~d~~~~~~~~----~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (161)
++++++.... .+|.|+.||| +.+....+++.+.+..+ +++|++||..|
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPP----R~G~~~~~lk~l~~~~p~~IvYVSCNP~T 400 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQLAKLKPKRIVYVSCNPAT 400 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCC----CCCCCHHHHHHHHhcCCCcEEEEeCCHHH
Confidence 9999876542 7899999999 88999899999999886 79999999766
No 19
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.74 E-value=4.2e-17 Score=122.23 Aligned_cols=124 Identities=23% Similarity=0.404 Sum_probs=100.3
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 031325 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (161)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (161)
+.++....+.+...+.......++.+|||+|||+|.+++.++..+ .+++|+|+++.+++.|++|++..++ ++++..+|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d 289 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD 289 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 556677777777766655443456799999999999999999875 5999999999999999999999888 89999999
Q ss_pred cccccCC--CcccEEEECCCCCCCCCCcchHHHHHHHhhcC-CcEEEEeccCc
Q 031325 105 IRNLEWR--GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 154 (161)
Q Consensus 105 ~~~~~~~--~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (161)
+.+.... ..||+|++|||+ .+...++++.+....+ +++|+.|+..+
T Consensus 290 ~~~~~~~~~~~~D~vi~DPPr----~G~~~~~l~~l~~~~p~~ivyvsc~p~T 338 (374)
T TIGR02085 290 SAKFATAQMSAPELVLVNPPR----RGIGKELCDYLSQMAPKFILYSSCNAQT 338 (374)
T ss_pred HHHHHHhcCCCCCEEEECCCC----CCCcHHHHHHHHhcCCCeEEEEEeCHHH
Confidence 9775432 269999999995 4556677777776654 79999998765
No 20
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.74 E-value=9.5e-17 Score=108.94 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=86.8
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~ 124 (161)
...++.++||+|||.|+.+++||++|. .|+++|+|+.+++.+++.++..+++++..+.|+.+......||+|++.-.|+
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEec
Confidence 444678999999999999999999988 9999999999999999988888889999999998887766899999988888
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+..+......++.+...+++++|.+.
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 88888888899999999886666554
No 21
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.74 E-value=8.9e-17 Score=108.98 Aligned_cols=118 Identities=33% Similarity=0.438 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC-CCe---------EEEEeCChHHHHHHHHHHhhcCC--ceE
Q 031325 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQ---------VIAIDIDSDSLELASENAADLEL--DID 99 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~-~~~---------v~~~D~~~~~~~~a~~~~~~~~~--~~~ 99 (161)
+...+...++......++..++|+.||+|++.++.+..+ ... ++|.|+++.+++.+++|++..++ .+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 333444444444444578899999999999999988752 223 88999999999999999999988 688
Q ss_pred EEEcccccccCC-CcccEEEECCCCCCCC------CCcchHHHHHHHhhcCCcEEEE
Q 031325 100 FVQCDIRNLEWR-GHVDTVVMNPPFGTRK------KGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 100 ~~~~d~~~~~~~-~~~D~i~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
+.+.|+.+++.. ..+|+|++||||+... ...+..+++.+.+.+++..+++
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999999843 4899999999999862 2344566788888787533333
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.73 E-value=2.1e-16 Score=107.61 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG 112 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~ 112 (161)
.+++.........++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+..++ +++++++|+.+.....
T Consensus 32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~ 111 (187)
T PRK00107 32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEE 111 (187)
T ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCC
Confidence 44344433322234789999999999999998864 456999999999999999999999888 7999999998876634
Q ss_pred cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 113 HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 113 ~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+||+|+++.. .....+++.+.+.+++++.+++
T Consensus 112 ~fDlV~~~~~------~~~~~~l~~~~~~LkpGG~lv~ 143 (187)
T PRK00107 112 KFDVVTSRAV------ASLSDLVELCLPLLKPGGRFLA 143 (187)
T ss_pred CccEEEEccc------cCHHHHHHHHHHhcCCCeEEEE
Confidence 8999999742 2234788999999986555554
No 23
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.73 E-value=7.9e-17 Score=110.62 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC-CC-cccEEEECCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-RG-HVDTVVMNPPF 123 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~-~~D~i~~~~p~ 123 (161)
.++.++||+|||+|.+++.++.++..+|+++|+++.+++.+++|++.+++ ++.++++|+.+... .. .||+|++||||
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 35679999999999999976655667999999999999999999999887 79999999977432 22 69999999998
Q ss_pred CCCCCCcchHHHHHHHhh--c-C-CcEEEEecc
Q 031325 124 GTRKKGVDMDFLSMALKV--A-S-QAVYSLHKT 152 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~ 152 (161)
.. +.....++.+... + . +.+|+-++.
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 53 4444555555542 2 2 466666543
No 24
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.72 E-value=3.3e-16 Score=113.42 Aligned_cols=103 Identities=22% Similarity=0.267 Sum_probs=81.6
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~~ 124 (161)
++.+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|++..++ ++.++++|+.+.....+||+|++||||.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 4578999999999999999986 345999999999999999999998887 5899999987643333799999999996
Q ss_pred CCCC-----------------------CcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKK-----------------------GVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.... .....++..+.+.+++++.+++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4321 1124567888888886555554
No 25
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.72 E-value=3.3e-16 Score=106.44 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=80.4
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRK 127 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~ 127 (161)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+.++.+..+|+.+... .+||+|++||||++..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVR-GKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccC-CcccEEEECCCCCCCc
Confidence 567899999999999999999866 99999999999999999998887788899999877543 3899999999997653
Q ss_pred CCc-------------------chHHHHHHHhhcCCcE
Q 031325 128 KGV-------------------DMDFLSMALKVASQAV 146 (161)
Q Consensus 128 ~~~-------------------~~~~~~~~~~~~~~~~ 146 (161)
... ...+++.+.+.+++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG 134 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGG 134 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCC
Confidence 211 2467888889998433
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=2.7e-16 Score=115.65 Aligned_cols=146 Identities=18% Similarity=0.105 Sum_probs=108.3
Q ss_pred hhhhhhhhcccccccCCcccccCCCCChhHHHHHH-HHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCCh
Q 031325 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRML-YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (161)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~ 81 (161)
++++...+..+..|.+.......+....+....+. ..+.......++.+|||+|||+|.++..++..+...|+|+|+|+
T Consensus 76 ~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~ 155 (322)
T PRK15068 76 RKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ 155 (322)
T ss_pred HHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence 34566777777778777777767766655544443 33444555567899999999999999999998776899999999
Q ss_pred HHHHHHHHHHhhc--CCceEEEEcccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 82 DSLELASENAADL--ELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 82 ~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.++..++...... ..++.+..+|+.+++....||+|++...++|.. .....++++.+.+++++.++.
T Consensus 156 ~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 156 LFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhccC--CHHHHHHHHHHhcCCCcEEEE
Confidence 9987655433332 227899999999887744899999988777653 344889999999986555544
No 27
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.72 E-value=1.6e-16 Score=118.39 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=82.0
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC----ceEEEEcccccccCCCcccEEE
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRGHVDTVV 118 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~~~D~i~ 118 (161)
++...+.+|||+|||+|.+++.++++ +..+|+++|+|+.+++.++++++.++. ++++...|+.......+||+|+
T Consensus 224 lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIl 303 (378)
T PRK15001 224 LPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVL 303 (378)
T ss_pred CCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEE
Confidence 33334569999999999999999986 456999999999999999999987653 5788888887643333899999
Q ss_pred ECCCCCCCCC---CcchHHHHHHHhhcCC--cEEEEe
Q 031325 119 MNPPFGTRKK---GVDMDFLSMALKVASQ--AVYSLH 150 (161)
Q Consensus 119 ~~~p~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~ 150 (161)
+||||+.... ....+++..+.+.+++ .++++.
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9999986521 2234678888989873 444443
No 28
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.72 E-value=3.9e-17 Score=112.76 Aligned_cols=105 Identities=26% Similarity=0.362 Sum_probs=91.8
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-CcccEEEECCCCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-GHVDTVVMNPPFGT 125 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~i~~~~p~~~ 125 (161)
.++.+|||+|||.|.++..+|+.|. +|+|+|+++.+++.|+.+..+.++++++.+..++++... ++||+|+|.-...|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 5889999999999999999999985 999999999999999999999998888999999998766 39999999988888
Q ss_pred CCCCcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 126 RKKGVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
..... .++..+.+.+|+++.+...+.+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccc
Confidence 75554 6999999999977666665443
No 29
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.72 E-value=1.9e-16 Score=121.24 Aligned_cols=122 Identities=20% Similarity=0.349 Sum_probs=97.5
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccc
Q 031325 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (161)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~ 105 (161)
..+....+.+.+.+.......++.+|||+|||+|.+++.+++.+ .+++|+|+|+.+++.|++|++..++ +++++++|+
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~ 354 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANL 354 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeCh
Confidence 44566677788888777666677899999999999999999875 5999999999999999999998888 799999999
Q ss_pred cccc----CC-CcccEEEECCCCCCCCCCcchHHHHHHHhhcC-CcEEEEeccCc
Q 031325 106 RNLE----WR-GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 154 (161)
Q Consensus 106 ~~~~----~~-~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (161)
.+.. .. ..||+|++|||+.- . .+.++.+.+..+ +.+|++|+..+
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr~g----~-~~~~~~l~~~~~~~ivyvSCnp~t 404 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPRAG----A-AEVMQALAKLGPKRIVYVSCNPAT 404 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCCcC----h-HHHHHHHHhcCCCeEEEEEeChHH
Confidence 7642 11 27999999999752 2 245555555443 79999998765
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.71 E-value=3e-16 Score=110.61 Aligned_cols=107 Identities=16% Similarity=0.226 Sum_probs=87.2
Q ss_pred hhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC-cccEE
Q 031325 42 NSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTV 117 (161)
Q Consensus 42 ~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~D~i 117 (161)
......++.+|||+|||+|..+..+++. +..+++|+|+++.+++.+++++...+. +++++++|+.+.+... +||+|
T Consensus 39 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 118 (231)
T TIGR02752 39 KRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYV 118 (231)
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEE
Confidence 3344557789999999999999999875 245999999999999999999887776 7899999998876544 89999
Q ss_pred EECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 118 VMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 118 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+++.++++.. ...+.++++.+.+++++.++.
T Consensus 119 ~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 119 TIGFGLRNVP--DYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EEecccccCC--CHHHHHHHHHHHcCcCeEEEE
Confidence 9988877653 345889999999986665554
No 31
>PLN02244 tocopherol O-methyltransferase
Probab=99.71 E-value=6.2e-16 Score=114.68 Aligned_cols=116 Identities=20% Similarity=0.149 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcCC-----CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 32 IASRMLYTAENSFGD-----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~-----~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
....+.+.+...... .++.+|||+|||+|.++..+++....+|+|+|+++.+++.++++....++ ++.++++|
T Consensus 97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 344556666655544 56789999999999999999986345999999999999999999888776 69999999
Q ss_pred cccccCCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 105 IRNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 105 ~~~~~~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
+.+++... .||+|++...++|.. ...++++++.+++++++.++
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~--d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP--DKRKFVQELARVAAPGGRII 220 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC--CHHHHHHHHHHHcCCCcEEE
Confidence 99887655 899999988777653 34589999999998544443
No 32
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.1e-16 Score=116.15 Aligned_cols=120 Identities=28% Similarity=0.367 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEc-ccc
Q 031325 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC-DIR 106 (161)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~-d~~ 106 (161)
++.+++.+++.. ...+|..+||+.||||++++++.-.|. +++|.|++..|++-++.|++..++ +..+..+ |+.
T Consensus 182 ~P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~ 256 (347)
T COG1041 182 DPRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT 256 (347)
T ss_pred CHHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccc
Confidence 455555555544 445899999999999999999999877 999999999999999999999887 6666666 999
Q ss_pred cccCCC-cccEEEECCCCCCCC-------CCcchHHHHHHHhhcCCcEEEEeccC
Q 031325 107 NLEWRG-HVDTVVMNPPFGTRK-------KGVDMDFLSMALKVASQAVYSLHKTS 153 (161)
Q Consensus 107 ~~~~~~-~~D~i~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (161)
.++..+ .+|.|++||||+... ..++.++++.+++.+++++++++...
T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 998776 699999999998763 23466889999999987776666443
No 33
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.70 E-value=5.6e-16 Score=113.22 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=80.4
Q ss_pred CeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCCCCC
Q 031325 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~ 126 (161)
.+|||+|||+|.+++.++.. +..+++++|+|+.+++.|++|++..++ ++.++++|+.+.....+||+|++||||...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 68999999999999999876 456999999999999999999998887 599999998764333379999999999542
Q ss_pred CC-----------------------CcchHHHHHHHhhcCCcEEEEe
Q 031325 127 KK-----------------------GVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 127 ~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.. .....++..+.+.+++++.+++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 1124667888888886555555
No 34
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.70 E-value=4.9e-16 Score=116.22 Aligned_cols=95 Identities=27% Similarity=0.361 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc
Q 031325 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (161)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (161)
++...+.+++.+..... ++.++||+|||+|.+++.+++. +..+++++|+|+.+++.+++|++..+.+++++++|+.+
T Consensus 234 PRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 234 PRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred CCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc
Confidence 44555666666655432 4569999999999999998864 45699999999999999999999888789999999876
Q ss_pred ccC--CCcccEEEECCCCCC
Q 031325 108 LEW--RGHVDTVVMNPPFGT 125 (161)
Q Consensus 108 ~~~--~~~~D~i~~~~p~~~ 125 (161)
... ..+||+|++||||..
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred cccccCCCccEEEECCCCCC
Confidence 432 237999999999954
No 35
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=5.1e-16 Score=110.53 Aligned_cols=121 Identities=20% Similarity=0.195 Sum_probs=106.0
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccc
Q 031325 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (161)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 106 (161)
-.+.....++.+...+...+|.+|||+|||-|.+++.+|+....+|+|+++|+++.+.+++.+...|+ ++++...|..
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r 132 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR 132 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc
Confidence 35667778888888889999999999999999999999998545999999999999999999999998 6999999998
Q ss_pred cccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 107 NLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 107 ~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
++... ||.|++--.|.|........+++.+.+.|++++.++.+
T Consensus 133 d~~e~--fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 133 DFEEP--FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccccc--cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 87654 99999999999999888999999999999854444443
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=4e-16 Score=113.31 Aligned_cols=99 Identities=23% Similarity=0.240 Sum_probs=86.0
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRK 127 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~ 127 (161)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++++....++++.+...|+.......+||+|+++..+++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 456999999999999999999865 9999999999999999999888888888899987765545899999999988876
Q ss_pred CCcchHHHHHHHhhcCCcEE
Q 031325 128 KGVDMDFLSMALKVASQAVY 147 (161)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~ 147 (161)
......+++.+.+.++++++
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcE
Confidence 66667899999999986555
No 37
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=7.8e-16 Score=109.94 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=87.2
Q ss_pred HHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCCcccEE
Q 031325 40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTV 117 (161)
Q Consensus 40 ~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~i 117 (161)
+...++...+.+|+|+|||.|.+++.+++. +..+++-+|+|..+++.+++|+..+++ +..+...|..+.... +||.|
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~I 228 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLI 228 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEE
Confidence 334444445569999999999999999997 456999999999999999999999888 336777787765544 89999
Q ss_pred EECCCCCCCCCCcch----HHHHHHHhhcC--CcEEEEec
Q 031325 118 VMNPPFGTRKKGVDM----DFLSMALKVAS--QAVYSLHK 151 (161)
Q Consensus 118 ~~~~p~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~ 151 (161)
++|||||... .... +.++.+.+.|+ +.+.++-+
T Consensus 229 isNPPfh~G~-~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 229 ISNPPFHAGK-AVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EeCCCccCCc-chhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999999643 3333 77888888887 56666665
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.69 E-value=3.3e-16 Score=95.31 Aligned_cols=93 Identities=26% Similarity=0.326 Sum_probs=78.4
Q ss_pred EEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCCCCCCCCCcc
Q 031325 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRKKGVD 131 (161)
Q Consensus 53 lD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~~~~~~ 131 (161)
||+|||+|..+..+++.+..+++++|+++.+++.++++....+ +.+.++|..+++..+ +||+|+++..+++. ...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG--VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST--EEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC--chheeehHHhCccccccccccccccceeec--cCH
Confidence 7999999999999999855699999999999999999887654 569999999998766 99999999999887 666
Q ss_pred hHHHHHHHhhcCCcEEEE
Q 031325 132 MDFLSMALKVASQAVYSL 149 (161)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~ 149 (161)
.+.++++.|+++++++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLV 94 (95)
T ss_dssp HHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEe
Confidence 699999999999776664
No 39
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.69 E-value=1.1e-15 Score=109.00 Aligned_cols=118 Identities=25% Similarity=0.332 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc
Q 031325 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~ 109 (161)
....++..+..... ..+.+|||+|||+|.++..+++. +..+++|+|+++.+++.+++++...++ ++.++++|+.+..
T Consensus 72 ~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~ 150 (251)
T TIGR03534 72 DTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL 150 (251)
T ss_pred ChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC
Confidence 34444444444433 24568999999999999999986 445999999999999999999998887 6999999997743
Q ss_pred CCCcccEEEECCCCCCCCC------Cc------------------chHHHHHHHhhcCCcEEEEe
Q 031325 110 WRGHVDTVVMNPPFGTRKK------GV------------------DMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 110 ~~~~~D~i~~~~p~~~~~~------~~------------------~~~~~~~~~~~~~~~~~~~~ 150 (161)
...+||+|++||||..... .. ...+++.+.+.+++++.++.
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 3348999999999975321 10 12567888888875444443
No 40
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.69 E-value=5.1e-16 Score=111.52 Aligned_cols=118 Identities=21% Similarity=0.239 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccc
Q 031325 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (161)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 106 (161)
.+.....++.+.......+|.+|||+|||.|.++..+++. |+ +|+|+.+|++..+.+++.+.+.|+ ++++..+|..
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence 4566778888888888899999999999999999999998 65 999999999999999999999998 6899999998
Q ss_pred cccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 107 NLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 107 ~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+++. +||.|++--.+.|........+++.+.+.|++++.++.
T Consensus 123 ~~~~--~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 123 DLPG--KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp G-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred ccCC--CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 8765 79999998889988877788999999999986555544
No 41
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.69 E-value=1.1e-15 Score=110.85 Aligned_cols=119 Identities=23% Similarity=0.332 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhcC-CCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccccc
Q 031325 32 IASRMLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (161)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (161)
..+.++..+..... ..+..+|||+|||+|.+++.++.. +..+++++|+|+.+++.|++|++..++ ++.++++|+.+
T Consensus 97 ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 97 ETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred ccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 34444444443322 222368999999999999999986 345999999999999999999998887 39999999977
Q ss_pred ccCCCcccEEEECCCCCCCCC-----------------------CcchHHHHHHHhhcCCcEEEEe
Q 031325 108 LEWRGHVDTVVMNPPFGTRKK-----------------------GVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 108 ~~~~~~~D~i~~~~p~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.....+||+|++||||-.... .....++..+.+.+++++++++
T Consensus 177 ~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 177 PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 433237999999999964321 0234567788888886555555
No 42
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.2e-16 Score=112.99 Aligned_cols=98 Identities=29% Similarity=0.350 Sum_probs=73.4
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 031325 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (161)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (161)
..|..-.+.+++.+......... +|+|+|||+|.+++.++... ..+|+|+|+|+.+++.|++|+..+++ ++.++.+|
T Consensus 90 liPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d 168 (280)
T COG2890 90 LIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSD 168 (280)
T ss_pred eecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee
Confidence 34444455555554422121122 79999999999999999863 45999999999999999999999996 66667777
Q ss_pred cccccCCCcccEEEECCCCCCC
Q 031325 105 IRNLEWRGHVDTVVMNPPFGTR 126 (161)
Q Consensus 105 ~~~~~~~~~~D~i~~~~p~~~~ 126 (161)
..+.... +||+|++||||-..
T Consensus 169 lf~~~~~-~fDlIVsNPPYip~ 189 (280)
T COG2890 169 LFEPLRG-KFDLIVSNPPYIPA 189 (280)
T ss_pred cccccCC-ceeEEEeCCCCCCC
Confidence 6664433 89999999999554
No 43
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.69 E-value=4e-16 Score=114.28 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=84.2
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC-cccEEEECCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPF 123 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~D~i~~~~p~ 123 (161)
.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++....+. ++.++++|+.+++... +||+|++.-.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4567999999999999999998755 999999999999999988765443 7899999998876554 89999998888
Q ss_pred CCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 124 GTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+|.... ..+++.+.+++++++.++..
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEE
Confidence 876543 48999999999865555543
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.69 E-value=1.1e-16 Score=98.94 Aligned_cols=94 Identities=26% Similarity=0.369 Sum_probs=79.0
Q ss_pred EEEecCCcchHHHHHHHcC----CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEE-CCCCCC
Q 031325 52 VADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVM-NPPFGT 125 (161)
Q Consensus 52 vlD~g~G~G~~~~~la~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~-~~p~~~ 125 (161)
|||+|||+|..+..+++.. ..+++|+|+|+.+++.++++....+.+++++++|+.+++... +||+|++ ..++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998862 269999999999999999999887778999999999987655 9999999 555888
Q ss_pred CCCCcchHHHHHHHhhcCCc
Q 031325 126 RKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~ 145 (161)
.........++++.+.++++
T Consensus 81 ~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 88888889999999988754
No 45
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=2.9e-16 Score=112.32 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=86.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCc
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGH 113 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (161)
.....++..+...++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.+++. ++.++++|+.++....+
T Consensus 16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~ 89 (255)
T PRK14103 16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWKPKPD 89 (255)
T ss_pred CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCCCCCC
Confidence 33444555555567889999999999999999886 345999999999999998763 37889999987754448
Q ss_pred ccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 114 VDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 114 ~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
||+|+++.++++.. .....+.++.+.+++++.++.
T Consensus 90 fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 90 TDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred ceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEE
Confidence 99999999999874 345899999999986666554
No 46
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.68 E-value=4.8e-16 Score=115.60 Aligned_cols=124 Identities=23% Similarity=0.406 Sum_probs=91.9
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEc
Q 031325 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC 103 (161)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~ 103 (161)
-+...+.....++..+.......++ .++|+.||.|.+++.+|+. ..+|+|+|+++.+++.|++|++.+++ ++++..+
T Consensus 174 FfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~ 251 (352)
T PF05958_consen 174 FFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRG 251 (352)
T ss_dssp ---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred CccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 3456678899999999888776655 8999999999999999986 45999999999999999999999999 8999998
Q ss_pred ccccccC----------------CC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCcc
Q 031325 104 DIRNLEW----------------RG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR 155 (161)
Q Consensus 104 d~~~~~~----------------~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (161)
++.++.. .. .+|+|+.||| +.+.....++.+.+ .++++|++|++.+.
T Consensus 252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP----R~G~~~~~~~~~~~-~~~ivYvSCnP~tl 315 (352)
T PF05958_consen 252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP----RAGLDEKVIELIKK-LKRIVYVSCNPATL 315 (352)
T ss_dssp -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-------TT-SCHHHHHHHHH-SSEEEEEES-HHHH
T ss_pred eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC----CCCchHHHHHHHhc-CCeEEEEECCHHHH
Confidence 8765421 11 5899999999 78888777777654 46799999987663
No 47
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.68 E-value=1.3e-15 Score=112.72 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=80.6
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~ 126 (161)
...+|||+|||+|.++..+++. +..+++++|+|+.+++.++++++.+++...+..+|+.... .+.||+|++|||||..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~-~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDI-KGRFDMIISNPPFHDG 274 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccccc-CCCccEEEECCCccCC
Confidence 4458999999999999999986 3459999999999999999999998877778888876632 3489999999999864
Q ss_pred CC---CcchHHHHHHHhhcCCcEEE
Q 031325 127 KK---GVDMDFLSMALKVASQAVYS 148 (161)
Q Consensus 127 ~~---~~~~~~~~~~~~~~~~~~~~ 148 (161)
.. ....+++..+.+.|++++.+
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEE
Confidence 22 23357889999999854433
No 48
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=1.1e-15 Score=109.37 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccC--CCcccEEEECCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW--RGHVDTVVMNPP 122 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~~~~D~i~~~~p 122 (161)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|+++....++ +++++++|+.++.. ..+||+|+++.+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3567999999999999999999864 999999999999999999988876 68999999987642 238999999999
Q ss_pred CCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 123 FGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
+++.... ..++..+.++++++++++
T Consensus 122 l~~~~~~--~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 122 LEWVADP--KSVLQTLWSVLRPGGALS 146 (255)
T ss_pred HHhhCCH--HHHHHHHHHHcCCCeEEE
Confidence 8876433 488999999998655554
No 49
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=9e-16 Score=109.94 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=86.5
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcc
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHV 114 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (161)
....+.......++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++.. ++.++.+|+..+....+|
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~~~~f 94 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQPPQAL 94 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCCCCCc
Confidence 4444555555567789999999999999999876 45699999999999999988753 478999999876544589
Q ss_pred cEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 115 DTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 115 D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
|+|+++..+++... ....+.++.+.+++++.++.
T Consensus 95 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 95 DLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred cEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEE
Confidence 99999999988643 45899999999985554444
No 50
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.67 E-value=1.6e-15 Score=115.87 Aligned_cols=122 Identities=20% Similarity=0.332 Sum_probs=96.4
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccc
Q 031325 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (161)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~ 106 (161)
..+.....+...+.......++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|++.+++ +++++.+|+.
T Consensus 272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~ 350 (431)
T TIGR00479 272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE 350 (431)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH
Confidence 4456666777777666555567899999999999999999864 5999999999999999999998888 8999999997
Q ss_pred cccC----C-CcccEEEECCCCCCCCCCcchHHHHHHHhhcC-CcEEEEeccCc
Q 031325 107 NLEW----R-GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 154 (161)
Q Consensus 107 ~~~~----~-~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (161)
+... . ..||+|++|||. .+....+++.+.+..+ +.+|+.|+..+
T Consensus 351 ~~l~~~~~~~~~~D~vi~dPPr----~G~~~~~l~~l~~l~~~~ivyvsc~p~t 400 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLDPPR----KGCAAEVLRTIIELKPERIVYVSCNPAT 400 (431)
T ss_pred HHHHHHHhcCCCCCEEEECcCC----CCCCHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 6321 1 269999999994 4555677776665443 67899998655
No 51
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.67 E-value=9.2e-16 Score=109.48 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 110 (161)
.+...+...+....+..++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++.. ...++++|+..++.
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~ 99 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPL 99 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcC
Confidence 4455555555555555567899999999999999998875 499999999999999988753 24688999988776
Q ss_pred CC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 111 RG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 111 ~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
.. +||+|+++.++++.. .....+.++.+++++++.++..
T Consensus 100 ~~~~fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CCCcEEEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEE
Confidence 55 899999999988754 3458999999999966655543
No 52
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.66 E-value=4.2e-15 Score=106.57 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=83.6
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhh---cCC-ceEEEEcccccccCCC-cccEE
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAAD---LEL-DIDFVQCDIRNLEWRG-HVDTV 117 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~~---~~~-~~~~~~~d~~~~~~~~-~~D~i 117 (161)
...++.+|||+|||+|.++..+++. + ..+|+|+|+|++|++.|+++... ... ++.++++|+.+++..+ +||+|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 4456789999999999999999875 3 35999999999999999876542 112 7899999999987765 89999
Q ss_pred EECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 118 VMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 118 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+++..+++.. ....++.++.+++++++.++.
T Consensus 150 ~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 150 TMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred EEecccccCC--CHHHHHHHHHHHcCcCcEEEE
Confidence 9988777654 445899999999996655544
No 53
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.66 E-value=1.7e-15 Score=113.08 Aligned_cols=122 Identities=18% Similarity=0.271 Sum_probs=97.0
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcc
Q 031325 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (161)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (161)
+..+....+.+.+.+....... +.++||++||+|.+++.+++. ..+|+|+|+++.+++.+++|+..+++ ++.++.+|
T Consensus 185 ~Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d 262 (362)
T PRK05031 185 TQPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMS 262 (362)
T ss_pred eccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3455677788888877754432 357999999999999999886 55999999999999999999999888 89999999
Q ss_pred cccccCC----------------C-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 105 IRNLEWR----------------G-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 105 ~~~~~~~----------------~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
+.+.... . .||+|+.|||+ .+...+.++.+.+ .++++|+.|+..+
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR----~G~~~~~l~~l~~-~~~ivyvSC~p~t 324 (362)
T PRK05031 263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR----AGLDDETLKLVQA-YERILYISCNPET 324 (362)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCEEEECCCC----CCCcHHHHHHHHc-cCCEEEEEeCHHH
Confidence 9774210 2 58999999995 4566677777766 4679999998755
No 54
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=3.6e-15 Score=107.68 Aligned_cols=119 Identities=22% Similarity=0.236 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEccccccc
Q 031325 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLE 109 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~ 109 (161)
..+.+++.+.......++.+|||+|||+|.++..++.. +..+++++|+++.+++.+++++... ..++.++.+|+.+..
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~ 171 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL 171 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC
Confidence 34455555554434456779999999999999999886 3569999999999999999998722 227899999987644
Q ss_pred CCCcccEEEECCCCCCCCC------------------------CcchHHHHHHHhhcCCcEEEEe
Q 031325 110 WRGHVDTVVMNPPFGTRKK------------------------GVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 110 ~~~~~D~i~~~~p~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
...+||+|++||||..... .....+++.+.+.++++++++.
T Consensus 172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 3348999999999964311 0123567777788886555554
No 55
>PHA03411 putative methyltransferase; Provisional
Probab=99.66 E-value=9.1e-16 Score=108.94 Aligned_cols=98 Identities=16% Similarity=0.296 Sum_probs=76.9
Q ss_pred ccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEE
Q 031325 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFV 101 (161)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~ 101 (161)
.+.|.+|..+...+. .. .....+|||+|||+|.++..++.+ +..+++++|+++.+++.++++.. ++.++
T Consensus 45 ~G~FfTP~~i~~~f~---~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v 114 (279)
T PHA03411 45 SGAFFTPEGLAWDFT---ID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWI 114 (279)
T ss_pred ceeEcCCHHHHHHHH---hc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEE
Confidence 467888888865532 11 124568999999999999988775 34599999999999999988753 57899
Q ss_pred EcccccccCCCcccEEEECCCCCCCCCCc
Q 031325 102 QCDIRNLEWRGHVDTVVMNPPFGTRKKGV 130 (161)
Q Consensus 102 ~~d~~~~~~~~~~D~i~~~~p~~~~~~~~ 130 (161)
++|+.++....+||+|++||||++.....
T Consensus 115 ~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 115 TSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred ECchhhhcccCCCcEEEEcCCccccCchh
Confidence 99999876545899999999999864443
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.66 E-value=1.6e-15 Score=104.84 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=83.9
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccc-cccc--CC-CcccEEEECC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI-RNLE--WR-GHVDTVVMNP 121 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~-~~~~--~~-~~~D~i~~~~ 121 (161)
++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.+++++...++ ++.++++|+ ..++ .. ..||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5679999999999999999876 445899999999999999999988777 899999999 5554 22 3899999976
Q ss_pred CCCCC------CCCcchHHHHHHHhhcCCcEEEEeccCcc
Q 031325 122 PFGTR------KKGVDMDFLSMALKVASQAVYSLHKTSTR 155 (161)
Q Consensus 122 p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (161)
|..+. .......+++.+.+.++++++++....+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 54322 12234688999999998666555544443
No 57
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.66 E-value=3e-15 Score=115.98 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=67.0
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~~ 124 (161)
++.+|||+|||+|.+++.++.. +..+++++|+|+.+++.|++|+...++ ++.++.+|+.+.....+||+|++||||.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3468999999999999998865 456999999999999999999998876 6899999987643333899999999997
Q ss_pred CC
Q 031325 125 TR 126 (161)
Q Consensus 125 ~~ 126 (161)
..
T Consensus 218 ~~ 219 (506)
T PRK01544 218 SH 219 (506)
T ss_pred Cc
Confidence 53
No 58
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=2.7e-15 Score=106.79 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=85.6
Q ss_pred CCCeEEEecCCcchHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPP 122 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p 122 (161)
++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|++++...+. +++++++|+.+.+.. .+|+|+++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~~ 134 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNFT 134 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhhH
Confidence 6689999999999999888862 456999999999999999999987765 789999999887654 5999999999
Q ss_pred CCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 123 FGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+++.........++++.+.+++++.++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8887666667899999999985444433
No 59
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.66 E-value=5e-15 Score=105.49 Aligned_cols=95 Identities=26% Similarity=0.309 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHhhcCC-CCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccc
Q 031325 29 GPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106 (161)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 106 (161)
+....+.+++.+...... ..+.++||+|||+|.+++.+++. +..+++++|+|+.+++.+++|++.++ .+++++|+.
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~ 143 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLY 143 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeech
Confidence 444555666665544332 23458999999999999999875 34599999999999999999998766 478899987
Q ss_pred cccC---CCcccEEEECCCCCC
Q 031325 107 NLEW---RGHVDTVVMNPPFGT 125 (161)
Q Consensus 107 ~~~~---~~~~D~i~~~~p~~~ 125 (161)
+... ...||+|++||||..
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCC
Confidence 6432 137999999999964
No 60
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.65 E-value=1.2e-14 Score=97.12 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=96.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC-
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG- 112 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~- 112 (161)
+....+..+.+.++++++|+|||+|+++++++.. +..+++++|-++++++..++|.++.+. ++.++.+++.+.....
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~ 101 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP 101 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC
Confidence 3334445556779999999999999999999954 466999999999999999999999999 9999999999875544
Q ss_pred cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCcccc
Q 031325 113 HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREV 157 (161)
Q Consensus 113 ~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
++|.|+...- ......++.++..++++..++.+..+.|.
T Consensus 102 ~~daiFIGGg------~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 102 SPDAIFIGGG------GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred CCCEEEECCC------CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 7999998554 33348999999999988888888877664
No 61
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.65 E-value=3.3e-15 Score=111.22 Aligned_cols=120 Identities=19% Similarity=0.286 Sum_probs=95.2
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccc
Q 031325 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (161)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~ 106 (161)
........++..+...... .+.++||+|||+|.+++.+++.. .+|+|+|+++.+++.+++|+..+++ ++.++.+|+.
T Consensus 178 ~N~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred CCHHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 4456667777777665432 23479999999999999999864 5999999999999999999999988 8999999997
Q ss_pred cccCC----------------C-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 107 NLEWR----------------G-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 107 ~~~~~----------------~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
++... . .||+|+.||| +.+...+.++.+.+ .++++|+.|+..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP----R~G~~~~~l~~l~~-~~~ivYvsC~p~t 315 (353)
T TIGR02143 256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP----RAGLDPDTCKLVQA-YERILYISCNPET 315 (353)
T ss_pred HHHHHHhhccccccccccccccCCCCEEEECCC----CCCCcHHHHHHHHc-CCcEEEEEcCHHH
Confidence 74321 1 3799999999 45666677777766 4689999998765
No 62
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.65 E-value=1.2e-15 Score=103.60 Aligned_cols=124 Identities=17% Similarity=0.331 Sum_probs=84.2
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
+++..+.+.+.+.+... ..++.++||+.||+|.++++++.+|+.+|+.+|.|+.++...++|++..+. ++.++.+|
T Consensus 23 PT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d 100 (183)
T PF03602_consen 23 PTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD 100 (183)
T ss_dssp SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred CCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence 34445555555555533 147899999999999999999999999999999999999999999999887 48899999
Q ss_pred ccccc-----CCCcccEEEECCCCCCCCCCcchHHHHHHH--hhcC-CcEEEEeccCc
Q 031325 105 IRNLE-----WRGHVDTVVMNPPFGTRKKGVDMDFLSMAL--KVAS-QAVYSLHKTST 154 (161)
Q Consensus 105 ~~~~~-----~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 154 (161)
+.... ....||+|++||||..... ..+.++.+. ..++ .++.++.+...
T Consensus 101 ~~~~l~~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 101 AFKFLLKLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHHhhcccCCCceEEEECCCcccchH--HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 76533 1238999999999975432 245666655 4444 34445545443
No 63
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.65 E-value=5.6e-15 Score=103.45 Aligned_cols=104 Identities=24% Similarity=0.294 Sum_probs=85.4
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~ 123 (161)
..++.+|||+|||+|.++..+++.+. +++|+|+|+.++..|++++...+. ++.+.++|+...+ .+||+|++...+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l 129 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVL 129 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHH
Confidence 35678999999999999999998754 999999999999999999887665 7899999998876 579999987666
Q ss_pred CCCCCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 124 GTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
.+.........+..+.+.+++.+++.+..
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 55544445577888888888777777754
No 64
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.64 E-value=3.8e-15 Score=106.86 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=87.6
Q ss_pred HHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEE
Q 031325 40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVV 118 (161)
Q Consensus 40 ~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~ 118 (161)
++......++.+|||+|||+|..+..+++....+|+|+|+++.+++.++++.... .++.+..+|+.+.+... +||+|+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-~~i~~~~~D~~~~~~~~~~FD~V~ 122 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK-NKIEFEANDILKKDFPENTFDMIY 122 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC-CceEEEECCcccCCCCCCCeEEEE
Confidence 3444455678899999999999999988753449999999999999999887542 26899999998766544 899999
Q ss_pred ECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 119 MNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 119 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+...+.|........+++++.+++++++.++..
T Consensus 123 s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 123 SRDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 977766654445668999999999976666553
No 65
>PRK05785 hypothetical protein; Provisional
Probab=99.64 E-value=5.4e-15 Score=103.85 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=82.9
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc
Q 031325 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (161)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (161)
....+...++..+..... ++.+|||+|||+|.++..+++....+++|+|+|++|++.+++.. .++++|+.+
T Consensus 33 ~~~~wr~~~~~~l~~~~~--~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~ 103 (226)
T PRK05785 33 QDVRWRAELVKTILKYCG--RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEA 103 (226)
T ss_pred CcHHHHHHHHHHHHHhcC--CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhh
Confidence 333444455554443322 36799999999999999998873349999999999999987642 457889988
Q ss_pred ccCCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 108 LEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 108 ~~~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
++..+ +||+|+++..+++. ....+.++++.+++++.+.++
T Consensus 104 lp~~d~sfD~v~~~~~l~~~--~d~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHAS--DNIEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred CCCCCCCEEEEEecChhhcc--CCHHHHHHHHHHHhcCceEEE
Confidence 87765 99999998777654 344589999999999744344
No 66
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=3.8e-15 Score=106.91 Aligned_cols=119 Identities=26% Similarity=0.345 Sum_probs=89.5
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCc--eEEEEc
Q 031325 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC 103 (161)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~ 103 (161)
|.++.+....++-..+..+.. ++.++||+|||+|.+++.+++.|...++|+|++|.+++.++.|...+++. +.....
T Consensus 141 FGTG~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 141 FGTGTHPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred cCCCCChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 345555555666555555333 78999999999999999999999989999999999999999999999874 334444
Q ss_pred ccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 104 DIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 104 d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+..+.+...+||+|++|-- .....+....+.+.++++++++.
T Consensus 220 ~~~~~~~~~~~DvIVANIL-----A~vl~~La~~~~~~lkpgg~lIl 261 (300)
T COG2264 220 LLLEVPENGPFDVIVANIL-----AEVLVELAPDIKRLLKPGGRLIL 261 (300)
T ss_pred cchhhcccCcccEEEehhh-----HHHHHHHHHHHHHHcCCCceEEE
Confidence 4444433348999999863 34444778888888886666554
No 67
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.64 E-value=3.7e-15 Score=103.61 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=80.1
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh-------------cCCceEEEEcccccccCC--C
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEWR--G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~~~~~~~d~~~~~~~--~ 112 (161)
++.+|||+|||.|..++++|++|. +|+|+|+|+.+++.+...... .+.++++.++|+.+++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 567999999999999999999877 999999999999986432110 122688999999987753 3
Q ss_pred cccEEEECCCCCCCCCCcchHHHHHHHhhcCCc
Q 031325 113 HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 113 ~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 145 (161)
.||.|+-...+++........++..+.++++++
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 799999888888888888889999999999854
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.63 E-value=2.2e-14 Score=91.52 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=82.7
Q ss_pred HhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC--CCcccE
Q 031325 41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDT 116 (161)
Q Consensus 41 ~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--~~~~D~ 116 (161)
.......++.+++|+|||+|..+..+++. +..+++++|+++.+++.+++++...+. ++.++.+|+..... ..+||+
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDR 91 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCE
Confidence 33334446779999999999999999986 446999999999999999999988777 78899898765322 238999
Q ss_pred EEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 117 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 117 i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
|++..+.. ...++++.+.+.++++++++..
T Consensus 92 v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 92 VFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 99976532 2348899999999976666554
No 69
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.63 E-value=3.2e-15 Score=100.65 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=70.8
Q ss_pred HHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEE
Q 031325 40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVV 118 (161)
Q Consensus 40 ~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~ 118 (161)
+.......++.++||+|||+|.++..++++ ..+++++|+++.+++.+++++...+ +++++.+|+.+++... .||.|+
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~~-~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAAD-NLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccCC-CEEEEECchhcCCccccCCCEEE
Confidence 344444557789999999999999999998 4599999999999999999886422 7899999999987655 699999
Q ss_pred ECCCCCC
Q 031325 119 MNPPFGT 125 (161)
Q Consensus 119 ~~~p~~~ 125 (161)
+|+||+.
T Consensus 83 ~n~Py~~ 89 (169)
T smart00650 83 GNLPYNI 89 (169)
T ss_pred ECCCccc
Confidence 9999975
No 70
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.63 E-value=1.1e-14 Score=100.73 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=79.1
Q ss_pred CCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFG 124 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p~~ 124 (161)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|+++.. ++.+.++|+.+ +... +||+|+++..++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 35678999999999999999886 45699999999999999988653 36788889887 4333 999999999988
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEE
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYS 148 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
|.......+.++++.+.+++.+++
T Consensus 117 hl~p~~~~~~l~el~r~~~~~v~i 140 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCSNRYILI 140 (204)
T ss_pred hCCHHHHHHHHHHHHhhcCcEEEE
Confidence 876666678999999998754444
No 71
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.63 E-value=1.1e-14 Score=99.48 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccC----CC-cccEEEE
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW----RG-HVDTVVM 119 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~----~~-~~D~i~~ 119 (161)
.++.++||++||+|.++++++.+|..+|+++|.++.+++.+++|++..++ +++++.+|+.+... .. .||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 46789999999999999999999878999999999999999999998887 58999999966421 12 4899999
Q ss_pred CCCCCCCCCCcchHHHHHHHh--hcC-CcEEEEeccCc
Q 031325 120 NPPFGTRKKGVDMDFLSMALK--VAS-QAVYSLHKTST 154 (161)
Q Consensus 120 ~~p~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 154 (161)
+|||... ...+.++.+.. .++ .+++++.+...
T Consensus 128 DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 128 DPPFFNG---ALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred CcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 9999742 23344444433 344 44555544443
No 72
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.63 E-value=7.3e-15 Score=104.13 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=86.1
Q ss_pred CCCeEEEecCCcchHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPP 122 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p 122 (161)
++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|++++...+. ++.++++|+.+.+.. .+|+|+++.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~~ 131 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNFT 131 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeecc
Confidence 6679999999999999999874 356999999999999999999887653 689999999987654 6899999888
Q ss_pred CCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 123 FGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+++........+++++.+.+++++.++..
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 88876555668999999999865555553
No 73
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.62 E-value=1.8e-14 Score=100.65 Aligned_cols=108 Identities=13% Similarity=0.033 Sum_probs=82.2
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG 112 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~ 112 (161)
+...+...+...++.+|||+|||+|+++..+++.. ..+|+++|+++.+++.|+++++..++ +++++.+|..+.....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 34444444456688999999999999999999863 23699999999999999999999888 8999999998754433
Q ss_pred -cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 113 -HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 113 -~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
.||+|+++++... ..+.+.+.+++++.++..
T Consensus 145 ~~fD~Ii~~~~~~~--------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPK--------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCccc--------ccHHHHHhcCcCcEEEEE
Confidence 8999999877432 223456677755555443
No 74
>PRK14968 putative methyltransferase; Provisional
Probab=99.62 E-value=3.8e-14 Score=96.77 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-c--eEEEEcccccccCCCcccEEEECCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRNLEWRGHVDTVVMNPPF 123 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~--~~~~~~d~~~~~~~~~~D~i~~~~p~ 123 (161)
.++.++||+|||+|.++..+++.+ .+++++|+++.+++.+++++...+. + +.++.+|..+......||+|++||||
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 467899999999999999999884 5999999999999999999988776 3 88899998775433379999999998
Q ss_pred CCCCC-------------------CcchHHHHHHHhhcCCcEEEE
Q 031325 124 GTRKK-------------------GVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 124 ~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 149 (161)
..... .....+++.+.+.+++++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 65221 112357888889998544443
No 75
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.62 E-value=2e-14 Score=108.23 Aligned_cols=104 Identities=24% Similarity=0.308 Sum_probs=80.7
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccccC-----CCcccEEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEW-----RGHVDTVVM 119 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~-----~~~~D~i~~ 119 (161)
++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.+++|+..+++ +++++++|+.+... ..+||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5789999999999999987776667999999999999999999999886 58899999988532 227999999
Q ss_pred CCCCCCCCCC-------cchHHHHHHHhhcCCcE-EEEec
Q 031325 120 NPPFGTRKKG-------VDMDFLSMALKVASQAV-YSLHK 151 (161)
Q Consensus 120 ~~p~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~ 151 (161)
|||+...... .+..++..+.+.+++++ .++|.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998654321 23344556677777444 44443
No 76
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.61 E-value=2.2e-14 Score=99.63 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=96.0
Q ss_pred HHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CC------CeEEEEeCChHHHHHHHHHHhhcCC----ceEEEEccc
Q 031325 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA------DQVIAIDIDSDSLELASENAADLEL----DIDFVQCDI 105 (161)
Q Consensus 37 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~------~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~ 105 (161)
-+.......+.++.++||++||||-++..+.+. +. .+|++.|+||.|+..++++..+.++ .+.++.+|+
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 344455566678899999999999999888774 22 6999999999999999999977666 378999999
Q ss_pred ccccCCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 106 RNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 106 ~~~~~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
+++++.+ .||.... .|+..+.....+.++++.|+||+++.+.|-.
T Consensus 169 E~LpFdd~s~D~yTi--afGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTI--AFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred ccCCCCCCcceeEEE--ecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999876 9999988 7888888888899999999999877777743
No 77
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.61 E-value=2.6e-14 Score=107.37 Aligned_cols=115 Identities=21% Similarity=0.225 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC
Q 031325 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 111 (161)
........+.......++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++.. ++++++..+|..++ .
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l--~ 226 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL--N 226 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc--C
Confidence 3444555566666667889999999999999999998634499999999999999999875 34578888888765 2
Q ss_pred CcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 112 GHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 112 ~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+||+|++...|++........+++.+.+.++++++++.
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 379999999888887655556899999999986555544
No 78
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.61 E-value=5.1e-15 Score=100.48 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=90.4
Q ss_pred HHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEE
Q 031325 40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVV 118 (161)
Q Consensus 40 ~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~ 118 (161)
++..++.....+|.|+|||+|..+..++++ +...++|+|.|+.|++.|++++- +++|..+|+..+.+...+|+++
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CCceecccHhhcCCCCccchhh
Confidence 444556667889999999999999999987 66799999999999999977653 6899999999998877999999
Q ss_pred ECCCCCCCCCCcchHHHHHHHhhcC-CcEEEEeccCc
Q 031325 119 MNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 154 (161)
Q Consensus 119 ~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (161)
+|..|+|.. ++.+.+..+...+. +++..++...+
T Consensus 98 aNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 98 ANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999999974 44588888888886 56666665554
No 79
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=7.6e-15 Score=114.66 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccccc--CCC-cccEEEECCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--WRG-HVDTVVMNPP 122 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~-~~D~i~~~~p 122 (161)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++....+.++.++++|+.+++ ... +||+|+++++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 36789999999999999888874 4569999999999999999987766667888999998765 233 8999999998
Q ss_pred CCCC-----------CCCcchHHHHHHHhhcCCcEEEEec
Q 031325 123 FGTR-----------KKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 123 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+++. ......++++++.+.+++++.++..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8753 1234468899999999966666554
No 80
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.60 E-value=4.4e-14 Score=94.90 Aligned_cols=94 Identities=23% Similarity=0.341 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhcCC--CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccccc
Q 031325 32 IASRMLYTAENSFGD--VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (161)
...++.+.++..... ..+.++||+.+|+|.++++.+.+|...++.+|.|..++...++|++..++ ++.++..|+..
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 334444555554443 68999999999999999999999999999999999999999999999885 78999999985
Q ss_pred ccC--CC--cccEEEECCCCCC
Q 031325 108 LEW--RG--HVDTVVMNPPFGT 125 (161)
Q Consensus 108 ~~~--~~--~~D~i~~~~p~~~ 125 (161)
... .. .||+|+.||||+.
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~ 126 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAK 126 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCcc
Confidence 422 22 4999999999984
No 81
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=6.3e-14 Score=97.15 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=80.8
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~ 111 (161)
+...+.......++.+|||+|||+|+.+..+++. + ..+|+++|+++.+++.+++++...+. ++++..+|..+....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 3444444445557789999999999999998875 2 35999999999999999999998876 489999999875443
Q ss_pred C-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 112 G-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 112 ~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
. .||+|+++.+..+. .+.+.+.+++++.++.
T Consensus 140 ~~~fD~Ii~~~~~~~~--------~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 140 HAPFDAIIVTAAASTI--------PSALVRQLKDGGVLVI 171 (205)
T ss_pred CCCccEEEEccCcchh--------hHHHHHhcCcCcEEEE
Confidence 3 89999998775432 2356677775444444
No 82
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.60 E-value=1.6e-14 Score=104.50 Aligned_cols=119 Identities=30% Similarity=0.367 Sum_probs=84.0
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcc
Q 031325 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104 (161)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d 104 (161)
.|.+..+...+++-..+..+ ..++.+|||+|||||.+++..++.|..+|+++|++|.+++.|++|.+.+++...+....
T Consensus 139 AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~ 217 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL 217 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC
T ss_pred cccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 45566777777777666664 34678999999999999999999998899999999999999999999999832333322
Q ss_pred cccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 105 IRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 105 ~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
..+.. ..+||+|++|--. .........+.+.++++++++.
T Consensus 218 ~~~~~-~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 218 SEDLV-EGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp TSCTC-CS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEE
T ss_pred ecccc-cccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEE
Confidence 22222 2489999998763 3334566666777765555554
No 83
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.59 E-value=4e-14 Score=109.52 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=85.8
Q ss_pred hcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECC
Q 031325 43 SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNP 121 (161)
Q Consensus 43 ~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~ 121 (161)
.....++.+|||+|||+|..+..+++....+++|+|+|+.+++.|+++....+.++.+.++|+...+... +||+|++..
T Consensus 261 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 261 KLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred hcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence 3334567899999999999999998864459999999999999999887654447899999998876544 899999988
Q ss_pred CCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 122 PFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 122 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+.|... ...+++++.+.+++++.++.
T Consensus 341 ~l~h~~d--~~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 341 TILHIQD--KPALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred cccccCC--HHHHHHHHHHHcCCCeEEEE
Confidence 8877643 45899999999996666554
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.59 E-value=7.3e-14 Score=95.53 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=78.8
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCCcccEEEECCC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPP 122 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~i~~~~p 122 (161)
...++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++ +++++.+|... .....||+|+++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~v~~~~~ 106 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADAIFIGGS 106 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCEEEECCC
Confidence 4447789999999999999999886 345999999999999999999988776 78899998753 22337999999765
Q ss_pred CCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 123 FGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+ .....++.+.+.++++++++.
T Consensus 107 ~~-----~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 107 GG-----NLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred cc-----CHHHHHHHHHHhcCCCeEEEE
Confidence 32 234678888999986555544
No 85
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.59 E-value=3.1e-14 Score=95.99 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=78.7
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~ 124 (161)
+...-.+++|+|||.|.++..|+.+ +..++++|+++.+++.|++++.... ++++.++|+.+..+.+.||+|++.-.+.
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLP-HVEWIQADVPEFWPEGRFDLIVLSEVLY 117 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT---SS-EEEEEEES-GG
T ss_pred CccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCCCCCCeeEEEEehHhH
Confidence 4445578999999999999999998 5699999999999999999998654 8999999999987777999999998887
Q ss_pred CCCC-CcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKK-GVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~-~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
++.. .....++..+...|.+++.++.
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 7764 4455778999998875555554
No 86
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.58 E-value=2.2e-14 Score=98.69 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=83.6
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc---CCC-cccEEEECC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE---WRG-HVDTVVMNP 121 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---~~~-~~D~i~~~~ 121 (161)
...++||+|||+|.++..+++. +...++|+|+++.+++.+++++...++ ++.++++|+.++. ... .+|.|++++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999986 456999999999999999999988887 8999999998753 222 799999987
Q ss_pred CCCCCC------CCcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 122 PFGTRK------KGVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 122 p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
|-.+.. .-....+++.+.++|++++.+...+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 643321 122357899999999865555544333
No 87
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.58 E-value=4.8e-14 Score=101.28 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC-CcccEEEEC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR-GHVDTVVMN 120 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-~~~D~i~~~ 120 (161)
...++.+|||+|||+|+.+..+++. ....|+++|+++.+++.+++++++.++ ++.++..|...+... ..||+|++|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 4457889999999999999999875 235899999999999999999999998 789999998776443 279999999
Q ss_pred CCCCCCC---C-----------------CcchHHHHHHHhhcCC---cEEEEecc
Q 031325 121 PPFGTRK---K-----------------GVDMDFLSMALKVASQ---AVYSLHKT 152 (161)
Q Consensus 121 ~p~~~~~---~-----------------~~~~~~~~~~~~~~~~---~~~~~~~~ 152 (161)
||+.-.. . ..+.++++.+.+.+++ .+|..|.-
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9976321 0 1234688888888874 45555543
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=1.1e-13 Score=96.41 Aligned_cols=108 Identities=13% Similarity=0.092 Sum_probs=80.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~ 111 (161)
.+...+.......++.+|||+|||+|+.+..+++. + ..+|+++|+++.+++.++++++..+. +++++++|.......
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 33334444445558899999999999999998876 2 35999999999999999999998888 799999998775443
Q ss_pred C-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 112 G-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 112 ~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
. .||+|+++..... ....+.+.+++++.++.
T Consensus 143 ~~~fD~I~~~~~~~~--------~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 143 NAPYDRIYVTAAGPD--------IPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CCCcCEEEECCCccc--------chHHHHHhhCCCcEEEE
Confidence 3 8999998655322 22345556774444444
No 89
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=5.1e-14 Score=101.64 Aligned_cols=103 Identities=21% Similarity=0.223 Sum_probs=84.5
Q ss_pred CCCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC-cccEEEECC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMNP 121 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~D~i~~~~ 121 (161)
..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++....+. ++++..+|+.+++... .||+|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 457889999999999988777664 3 34899999999999999999888777 8899999998877554 899999998
Q ss_pred CCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 122 PFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 122 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+++.. ...+.++++.+++++++.++.
T Consensus 155 v~~~~~--d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 155 VINLSP--DKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred cccCCC--CHHHHHHHHHHHcCCCcEEEE
Confidence 887643 334899999999996555554
No 90
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.58 E-value=8e-14 Score=101.31 Aligned_cols=116 Identities=27% Similarity=0.355 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccc
Q 031325 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (161)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~ 105 (161)
+.......+....+... ..++.+|||+|||+|.+++.+++.+..+++++|+++.+++.++++...+++ ++.+..++.
T Consensus 140 tG~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~ 218 (288)
T TIGR00406 140 TGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL 218 (288)
T ss_pred CCCCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc
Confidence 33444444444444332 236789999999999999999888777999999999999999999998876 456666664
Q ss_pred ccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 106 RNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 106 ~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.... ..+||+|++|.... .....+..+.+.++++++++.
T Consensus 219 ~~~~-~~~fDlVvan~~~~-----~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 219 EQPI-EGKADVIVANILAE-----VIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred cccc-CCCceEEEEecCHH-----HHHHHHHHHHHHcCCCcEEEE
Confidence 3322 23899999987632 234788889999986655554
No 91
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.58 E-value=5.1e-14 Score=102.98 Aligned_cols=103 Identities=24% Similarity=0.291 Sum_probs=80.0
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc------CCceEEEEcccccccCCCcccEEEEC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRNLEWRGHVDTVVMN 120 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~~D~i~~~ 120 (161)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.... ..++.+..+|+.++ ...||+|++.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3578999999999999999999865 9999999999999999998764 12578888888654 2479999998
Q ss_pred CCCCCCCCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 121 PPFGTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 121 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
-.+.|.........+..+.+..++.+++.+..
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p 251 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLASLAEKRLIISFAP 251 (315)
T ss_pred CEEEecCHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 77766554444456777776666677776644
No 92
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.58 E-value=3.1e-14 Score=94.15 Aligned_cols=104 Identities=36% Similarity=0.444 Sum_probs=70.3
Q ss_pred CeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC----cccEEEECCCC
Q 031325 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG----HVDTVVMNPPF 123 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~----~~D~i~~~~p~ 123 (161)
..|+|++||.|+.++.+|+. ..+|+++|+++..++.+++|++..|+ +++++++|+.+..... .+|+|+++|||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 36999999999999999997 55999999999999999999999997 8999999999875432 28999999999
Q ss_pred CCC--------C--CCc----chHHHHHHHhhcCCcEEEEeccCc
Q 031325 124 GTR--------K--KGV----DMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 124 ~~~--------~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
+-. + ... ..++++.+.+..+.+++.+...++
T Consensus 80 GGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~d 124 (163)
T PF09445_consen 80 GGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSD 124 (163)
T ss_dssp SSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB-
T ss_pred CCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 742 0 011 124455555555566666664443
No 93
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=7.4e-14 Score=106.47 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=87.3
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC--CCcccEEEE
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVM 119 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--~~~~D~i~~ 119 (161)
...++.+|||+|||+|+.+..+++. +..+|+++|+++.+++.+++++++.|+ ++.+.++|..+++. ...||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 4557889999999999999999875 345999999999999999999999998 68999999987652 237999999
Q ss_pred CCCCCCCCC--------------------CcchHHHHHHHhhcCC---cEEEEeccCccc
Q 031325 120 NPPFGTRKK--------------------GVDMDFLSMALKVASQ---AVYSLHKTSTRE 156 (161)
Q Consensus 120 ~~p~~~~~~--------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 156 (161)
|+|+..... ..+.+.+..+.+.+++ .+|..|.....|
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eE 373 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEE 373 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh
Confidence 999854321 1234668888888874 555566444333
No 94
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=7.1e-14 Score=107.17 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=84.7
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCCcccEEEECC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNP 121 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~i~~~~ 121 (161)
...++.+|||+|||+|+.+..+++. +..+|+++|+++.+++.+++++++.|+ ++.++++|+..+.....||+|++||
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcC
Confidence 4457789999999999999988874 235999999999999999999999998 7899999998875444899999999
Q ss_pred CCCCCCC--------------------CcchHHHHHHHhhcCC---cEEEEecc
Q 031325 122 PFGTRKK--------------------GVDMDFLSMALKVASQ---AVYSLHKT 152 (161)
Q Consensus 122 p~~~~~~--------------------~~~~~~~~~~~~~~~~---~~~~~~~~ 152 (161)
|+.-... ..+.+.+..+.+.+++ .+|..|..
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9743211 1233578888889884 44444443
No 95
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.57 E-value=3.1e-14 Score=99.30 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=80.0
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh-------------cCCceEEEEcccccccCCC-
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEWRG- 112 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~~~~~~~d~~~~~~~~- 112 (161)
.++.+|||+|||.|..+.+||++|. +|+|+|+|+.+++.+...... ...++++.++|+.++....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 3567999999999999999999877 999999999999986432110 1126889999999886543
Q ss_pred -cccEEEECCCCCCCCCCcchHHHHHHHhhcCCc
Q 031325 113 -HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 113 -~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 145 (161)
.||.|+-...|++.......+++..+.++++++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 799999877888888888889999999999855
No 96
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.57 E-value=5.5e-14 Score=103.57 Aligned_cols=113 Identities=25% Similarity=0.320 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCC--------------------------------------
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-------------------------------------- 72 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~-------------------------------------- 72 (161)
.+.+.+...+....+-.++..++|+-||+|++.++.|..+..
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 455555555665555556779999999999999999876421
Q ss_pred --eEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC-CcccEEEECCCCCCCCCC------cchHHHHHHHhh
Q 031325 73 --QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-GHVDTVVMNPPFGTRKKG------VDMDFLSMALKV 141 (161)
Q Consensus 73 --~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~~D~i~~~~p~~~~~~~------~~~~~~~~~~~~ 141 (161)
.++|.|+++.+++.|+.|..++|+ .++|.++|+.++... ..+|+||+||||+..-.. ++..+.+.+++.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 377999999999999999999999 699999999998776 589999999999986222 333444455555
Q ss_pred cC
Q 031325 142 AS 143 (161)
Q Consensus 142 ~~ 143 (161)
++
T Consensus 334 ~~ 335 (381)
T COG0116 334 LA 335 (381)
T ss_pred hc
Confidence 54
No 97
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=1e-13 Score=105.82 Aligned_cols=105 Identities=22% Similarity=0.258 Sum_probs=83.1
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC---CCcccEEEEC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RGHVDTVVMN 120 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~i~~~ 120 (161)
...++.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++..|+++.++++|+.+... ..+||.|++|
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 45578899999999999999999863 3599999999999999999999988878899999987542 2379999999
Q ss_pred CCCCCCC------------C--------CcchHHHHHHHhhcCCcEEEE
Q 031325 121 PPFGTRK------------K--------GVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 121 ~p~~~~~------------~--------~~~~~~~~~~~~~~~~~~~~~ 149 (161)
||+.... . ..+.+++..+.+.+++++.++
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9985321 0 112367888999998544443
No 98
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.56 E-value=3.3e-14 Score=114.18 Aligned_cols=101 Identities=22% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccccC--CCcccEEEECCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEW--RGHVDTVVMNPP 122 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~--~~~~D~i~~~~p 122 (161)
++.+|||+|||+|.+++.++..|..+|+++|+|+.+++.+++|++.+++ +++++++|+.+... ..+||+|++|||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 5789999999999999999998777899999999999999999998887 48999999987532 238999999999
Q ss_pred CCCCCCC---------cchHHHHHHHhhcCCcEEE
Q 031325 123 FGTRKKG---------VDMDFLSMALKVASQAVYS 148 (161)
Q Consensus 123 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 148 (161)
+...... .+.+++..+.+.+++++.+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l 652 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTL 652 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEE
Confidence 7543222 2345677778888743333
No 99
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.56 E-value=1.1e-13 Score=101.99 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhhcCC-CCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccccc
Q 031325 32 IASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 109 (161)
..+.+...++..... .++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++.... ++.++.+|+.+++
T Consensus 96 ~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~i~gD~e~lp 173 (340)
T PLN02490 96 WTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIIEGDAEDLP 173 (340)
T ss_pred chHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--CCeEEeccHHhCC
Confidence 344444444443332 35679999999999999988875 4459999999999999999876432 5788999998877
Q ss_pred CCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEE
Q 031325 110 WRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYS 148 (161)
Q Consensus 110 ~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
... .||+|+++..+++... ....++++.+++++++.+
T Consensus 174 ~~~~sFDvVIs~~~L~~~~d--~~~~L~e~~rvLkPGG~L 211 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKA 211 (340)
T ss_pred CCCCceeEEEEcChhhhCCC--HHHHHHHHHHhcCCCcEE
Confidence 654 8999999888876543 347899999999854444
No 100
>PRK06202 hypothetical protein; Provisional
Probab=99.56 E-value=6.6e-14 Score=98.85 Aligned_cols=97 Identities=24% Similarity=0.274 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCcchHHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEEC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMN 120 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~----~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~ 120 (161)
.++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.++++....+ +.+..++...++... +||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--VTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--CeEEEEecccccccCCCccEEEEC
Confidence 45679999999999999888753 2 2499999999999999988765444 455555555444333 89999999
Q ss_pred CCCCCCCCCcchHHHHHHHhhcCCc
Q 031325 121 PPFGTRKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 121 ~p~~~~~~~~~~~~~~~~~~~~~~~ 145 (161)
..++|.........++++.+.+++.
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~~~ 161 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALARRL 161 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcCee
Confidence 9999986655568999999998843
No 101
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.56 E-value=1.3e-13 Score=95.11 Aligned_cols=106 Identities=17% Similarity=0.332 Sum_probs=82.9
Q ss_pred HhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC--Ccc
Q 031325 41 ENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR--GHV 114 (161)
Q Consensus 41 ~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~--~~~ 114 (161)
.......++.+++|+|||+|.+++.+++. +..+++++|+++.+++.+++++...++ ++.++.+|..+.... ..|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 33446668899999999999999998874 345999999999999999999998884 789999999774322 379
Q ss_pred cEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 115 DTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 115 D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
|.|+++.. ......+++.+.+.+++++.++..
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEEE
Confidence 99998653 233457899999999865555543
No 102
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.56 E-value=5e-14 Score=100.90 Aligned_cols=96 Identities=19% Similarity=0.333 Sum_probs=78.6
Q ss_pred ccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEE
Q 031325 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQ 102 (161)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~ 102 (161)
..+|..++.+...+++.+ ...++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...+ ++++++
T Consensus 8 GQnfl~d~~~~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~-~v~ii~ 81 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYA----EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAG-NVEIIE 81 (258)
T ss_pred CccccCCHHHHHHHHHhc----CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCC-CEEEEE
Confidence 345666777777776654 33477899999999999999999985 499999999999999998876422 799999
Q ss_pred cccccccCCCcccEEEECCCCCC
Q 031325 103 CDIRNLEWRGHVDTVVMNPPFGT 125 (161)
Q Consensus 103 ~d~~~~~~~~~~D~i~~~~p~~~ 125 (161)
+|+.+++.. .||.|++|+||+.
T Consensus 82 ~D~~~~~~~-~~d~Vv~NlPy~i 103 (258)
T PRK14896 82 GDALKVDLP-EFNKVVSNLPYQI 103 (258)
T ss_pred eccccCCch-hceEEEEcCCccc
Confidence 999887654 5899999999975
No 103
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.56 E-value=1.1e-13 Score=103.14 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=89.5
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc---CCCcccEEE
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE---WRGHVDTVV 118 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---~~~~~D~i~ 118 (161)
+....+..+||+|||+|.++..+|+. +...++|+|+++.+++.+.+++...++ ++.++++|+..+. ...++|.|+
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 34446679999999999999999986 456999999999999999999998888 9999999997642 223899999
Q ss_pred ECCCCCCCCC----CcchHHHHHHHhhcCCcEEEEeccCcccc
Q 031325 119 MNPPFGTRKK----GVDMDFLSMALKVASQAVYSLHKTSTREV 157 (161)
Q Consensus 119 ~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
++.|..|... -....+++.+.++|++++.+...+...++
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y 240 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELY 240 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence 9887655321 12358899999999977666665554444
No 104
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.56 E-value=4.8e-14 Score=101.66 Aligned_cols=94 Identities=22% Similarity=0.339 Sum_probs=76.0
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcc
Q 031325 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104 (161)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d 104 (161)
.|..+..+...+++.+ ...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++.. -++.++++|
T Consensus 23 ~fl~~~~i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D 95 (272)
T PRK00274 23 NFLIDENILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGD 95 (272)
T ss_pred CcCCCHHHHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEECh
Confidence 3666766666655544 344778999999999999999999865 999999999999999887643 368999999
Q ss_pred cccccCCC-cccEEEECCCCCC
Q 031325 105 IRNLEWRG-HVDTVVMNPPFGT 125 (161)
Q Consensus 105 ~~~~~~~~-~~D~i~~~~p~~~ 125 (161)
+.+++... .++.|++||||..
T Consensus 96 ~~~~~~~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 96 ALKVDLSELQPLKVVANLPYNI 117 (272)
T ss_pred hhcCCHHHcCcceEEEeCCccc
Confidence 99876543 2599999999976
No 105
>PLN03075 nicotianamine synthase; Provisional
Probab=99.56 E-value=2.2e-13 Score=98.10 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=82.6
Q ss_pred CCCCeEEEecCCcchH-HHHHH-Hc-CCCeEEEEeCChHHHHHHHHHHhh-cCC--ceEEEEcccccccCC-CcccEEEE
Q 031325 47 VSNKVVADFGCGCGTL-GAAAT-LL-GADQVIAIDIDSDSLELASENAAD-LEL--DIDFVQCDIRNLEWR-GHVDTVVM 119 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~-~~~la-~~-~~~~v~~~D~~~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~~~-~~~D~i~~ 119 (161)
..+++|+|+|||.|.+ ++.++ +. +..+++|+|+|+.+++.|++.+.. .++ +++|..+|+.+.... ..||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998844 33333 33 456899999999999999999965 666 699999999886433 38999999
Q ss_pred CCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 120 NPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 120 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+ ..+........++++.+.+.++++++++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9 766666677889999999999866666654
No 106
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.55 E-value=7.6e-14 Score=101.30 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=81.2
Q ss_pred ccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ce
Q 031325 21 VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DI 98 (161)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~ 98 (161)
.....+..++.+...+++.. ...++.+|+|+|||+|.++..+++.+ .+++++|+|+.+++.+++++...+. ++
T Consensus 13 ~~GQnFL~d~~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v 87 (294)
T PTZ00338 13 KFGQHILKNPLVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKL 87 (294)
T ss_pred CCCccccCCHHHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcE
Confidence 33444556667766666544 34477899999999999999999875 4899999999999999999887653 79
Q ss_pred EEEEcccccccCCCcccEEEECCCCCCCC
Q 031325 99 DFVQCDIRNLEWRGHVDTVVMNPPFGTRK 127 (161)
Q Consensus 99 ~~~~~d~~~~~~~~~~D~i~~~~p~~~~~ 127 (161)
+++++|+.+.+.. .||+|++|+||+...
T Consensus 88 ~ii~~Dal~~~~~-~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 88 EVIEGDALKTEFP-YFDVCVANVPYQISS 115 (294)
T ss_pred EEEECCHhhhccc-ccCEEEecCCcccCc
Confidence 9999999886654 689999999998743
No 107
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.54 E-value=7.7e-14 Score=92.45 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=95.4
Q ss_pred cccccccCCcccccCCCCChhHHHHHHHHHHhhcC---CCCC-CeEEEecCCcchHHHHHHHcCCC-eEEEEeCChHHHH
Q 031325 11 GDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG---DVSN-KVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLE 85 (161)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~vlD~g~G~G~~~~~la~~~~~-~v~~~D~~~~~~~ 85 (161)
..+..|....-..+.|.. .+...++++.+..... ..+. .+|||+|||+|.+...|++-+.. ..+|+|.++.+++
T Consensus 27 ~El~Nfr~hgd~GEvWFg-~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~ 105 (227)
T KOG1271|consen 27 LELTNFREHGDEGEVWFG-EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVE 105 (227)
T ss_pred HHHhhcccCCCccceecC-CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHH
Confidence 344455555555665655 3455555555544433 2333 39999999999999999997644 5999999999999
Q ss_pred HHHHHHhhcCC--ceEEEEcccccccCCC-cccEEEECCCCCCC------CCCcchHHHHHHHhhcC-C--cEEEEeccC
Q 031325 86 LASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR------KKGVDMDFLSMALKVAS-Q--AVYSLHKTS 153 (161)
Q Consensus 86 ~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~------~~~~~~~~~~~~~~~~~-~--~~~~~~~~~ 153 (161)
+|+...++.++ .++|.+.|+.+..+.. +||+|+--..|... ......-++..+.+.++ . .+...||..
T Consensus 106 LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 106 LAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred HHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 99998888888 3999999999865543 66666543222111 11111234444455554 3 444456777
Q ss_pred cccccc
Q 031325 154 TREVSR 159 (161)
Q Consensus 154 ~~~~~~ 159 (161)
..|..+
T Consensus 186 ~dELv~ 191 (227)
T KOG1271|consen 186 KDELVE 191 (227)
T ss_pred HHHHHH
Confidence 666554
No 108
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.54 E-value=4.2e-13 Score=94.48 Aligned_cols=102 Identities=27% Similarity=0.361 Sum_probs=80.8
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~ 123 (161)
..++.+|||+|||+|.++..+++.+. .++|+|+++.+++.++++....+. ++.+..+|.... ...||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchh
Confidence 34677999999999999999998765 799999999999999999887766 688999985432 2379999998888
Q ss_pred CCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 124 GTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
++.........++.+.+.+++.+.+.+
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 665555555777777777776565554
No 109
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=8.6e-14 Score=105.08 Aligned_cols=125 Identities=24% Similarity=0.333 Sum_probs=106.4
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEc
Q 031325 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC 103 (161)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~ 103 (161)
-|.++...++.+...+.+..+...+..++|++||||.+++.+++. ..+|+|+|+++.+++-|+.|.+.+|+ |++|++|
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 455677888899999999888888899999999999999999985 77999999999999999999999999 9999999
Q ss_pred ccccccCCC------ccc-EEEECCCCCCCCCCcchHHHHHHHhhc--CCcEEEEeccCc
Q 031325 104 DIRNLEWRG------HVD-TVVMNPPFGTRKKGVDMDFLSMALKVA--SQAVYSLHKTST 154 (161)
Q Consensus 104 d~~~~~~~~------~~D-~i~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 154 (161)
-++++.... .-+ +++.||| +.+.++.++..+.+.- +..+|++|+.-+
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPp----R~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPP----RKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCC----cccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 776654432 345 7889999 7899988888877765 379999997543
No 110
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=3.2e-13 Score=103.31 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=85.5
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc----C-CCccc
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE----W-RGHVD 115 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~-~~~~D 115 (161)
....++.+|||+|||+|+.+..+++. +..+++++|+++.+++.+++++++.|+ ++.++++|+.+.. . ..+||
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 34557889999999999999999885 235999999999999999999999998 7899999998765 2 23799
Q ss_pred EEEECCCCCCCC---C-C----------------cchHHHHHHHhhcCCc---EEEEecc
Q 031325 116 TVVMNPPFGTRK---K-G----------------VDMDFLSMALKVASQA---VYSLHKT 152 (161)
Q Consensus 116 ~i~~~~p~~~~~---~-~----------------~~~~~~~~~~~~~~~~---~~~~~~~ 152 (161)
.|++|+|+.-.. + . .+.+.++.+.+.++++ +|..|.-
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999999974321 0 1 1357788999998853 4444543
No 111
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.53 E-value=1e-13 Score=97.33 Aligned_cols=99 Identities=22% Similarity=0.180 Sum_probs=82.1
Q ss_pred CeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCCCCC
Q 031325 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFGTR 126 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~ 126 (161)
++|||+|||+|..+..+++. +..+++|+|+|+.+++.+++++...++ ++++..+|+...+...+||+|++...+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999876 345999999999999999999988776 689999999766544589999998777765
Q ss_pred CCCcchHHHHHHHhhcCCcEEEEe
Q 031325 127 KKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.. ...+++.+.+.++++++++.
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEE
Confidence 33 45899999999986666554
No 112
>PRK08317 hypothetical protein; Provisional
Probab=99.52 E-value=5.7e-13 Score=94.05 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=87.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cc
Q 031325 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HV 114 (161)
Q Consensus 38 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~ 114 (161)
+.+.......++.+|||+|||+|.++..+++. +..+++|+|+++.+++.++++....+.++.+..+|+...+... .|
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 34444455567889999999999999999876 3469999999999999999884433347889999988766544 89
Q ss_pred cEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 115 DTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 115 D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
|+|+++..+++... ....++.+.+.++++++++.
T Consensus 89 D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 89 DAVRSDRVLQHLED--PARALAEIARVLRPGGRVVV 122 (241)
T ss_pred eEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEE
Confidence 99999888877543 45889999999986666554
No 113
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.52 E-value=5.9e-13 Score=92.77 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=76.6
Q ss_pred hcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC-CcccEEEEC
Q 031325 43 SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR-GHVDTVVMN 120 (161)
Q Consensus 43 ~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-~~~D~i~~~ 120 (161)
.....++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++++..++ ++++..+|..+.... ..||+|+++
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVT 151 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEc
Confidence 3345577899999999999999888874 4899999999999999999998888 799999998664333 389999998
Q ss_pred CCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 121 PPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 121 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.++... .+.+.+.+++++.++.
T Consensus 152 ~~~~~~--------~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 152 AAAPEI--------PRALLEQLKEGGILVA 173 (212)
T ss_pred cCchhh--------hHHHHHhcCCCcEEEE
Confidence 775432 3345667764444433
No 114
>PRK04266 fibrillarin; Provisional
Probab=99.52 E-value=7.1e-13 Score=92.92 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccccc
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 109 (161)
.....++..+ ......++.+|||+|||+|.++..+++. +..+|+++|+++.|++.+.++++.. .++.++.+|+....
T Consensus 56 ~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~ 133 (226)
T PRK04266 56 KLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPE 133 (226)
T ss_pred chHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcc
Confidence 3344444433 3456668889999999999999999986 3459999999999999887776543 26889999987531
Q ss_pred ----CCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 110 ----WRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 110 ----~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
....||+|+++.+. .......++++.+.|++++.++.
T Consensus 134 ~~~~l~~~~D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 134 RYAHVVEKVDVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred hhhhccccCCEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEE
Confidence 12379999987552 12223568899999986555544
No 115
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.52 E-value=6.9e-13 Score=91.37 Aligned_cols=104 Identities=18% Similarity=0.238 Sum_probs=79.1
Q ss_pred hcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccc-cC-CCcccEEE
Q 031325 43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL-EW-RGHVDTVV 118 (161)
Q Consensus 43 ~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-~~-~~~~D~i~ 118 (161)
.....++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++++..++ +++++.+|+.+. +. ...+|.++
T Consensus 35 ~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 35 QLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence 334457789999999999999999865 346999999999999999999988887 789999998652 21 12467776
Q ss_pred ECCCCCCCCCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 119 MNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 119 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
.+.. .....+++.+.+.+++++.++...
T Consensus 115 ~~~~------~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IEGG------RPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EECC------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 6432 222488999999998666665543
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.52 E-value=1.5e-13 Score=106.30 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=84.3
Q ss_pred hhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc--ccCCC-cccEEE
Q 031325 42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN--LEWRG-HVDTVV 118 (161)
Q Consensus 42 ~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~-~~D~i~ 118 (161)
......++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++.... .-++.++++|+.. .+... +||+|+
T Consensus 31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 31 SLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH-YKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred hhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc-CCceEEEEecccccccCCCCCCEEEEe
Confidence 33344467799999999999999999874 4999999999999887653321 1268899999864 33333 899999
Q ss_pred ECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 119 MNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 119 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
++.++++.......+++.++.+.++++++++..
T Consensus 109 ~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999886665668999999999977776664
No 117
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.52 E-value=1.7e-13 Score=102.30 Aligned_cols=104 Identities=27% Similarity=0.375 Sum_probs=83.8
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccccCC----C-cccEEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWR----G-HVDTVVM 119 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~----~-~~D~i~~ 119 (161)
.|++|||+.|-||++++.+|..|+.+|+++|+|..+++.|++|++-+|+ ++.++++|+.++... + +||+|++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 5899999999999999999998888999999999999999999999998 578999999986542 2 8999999
Q ss_pred CCC-CCCCCCCc------chHHHHHHHhhcC-CcEEEEec
Q 031325 120 NPP-FGTRKKGV------DMDFLSMALKVAS-QAVYSLHK 151 (161)
Q Consensus 120 ~~p-~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~ 151 (161)
||| |....... +.+.+..+.++++ +++.++++
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 999 54432222 3345667777776 44444443
No 118
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.52 E-value=3.7e-13 Score=95.13 Aligned_cols=103 Identities=23% Similarity=0.305 Sum_probs=82.0
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC-cccEEEE
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVM 119 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~D~i~~ 119 (161)
...++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++...+. ++.+..+|+.+.+... .||+|++
T Consensus 48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTI 127 (239)
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEE
Confidence 33467899999999999999998874 46999999999999999999876544 6889999998876543 8999998
Q ss_pred CCCCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 120 NPPFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 120 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
+..+++. ......++.+.+.+++++.++
T Consensus 128 ~~~l~~~--~~~~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 128 AFGLRNV--PDIDKALREMYRVLKPGGRLV 155 (239)
T ss_pred ecccccC--CCHHHHHHHHHHhccCCcEEE
Confidence 7666554 344588999999998554444
No 119
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.51 E-value=1.9e-13 Score=96.57 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=80.2
Q ss_pred CCCCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFG 124 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p~~ 124 (161)
..+.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++... ++.++.+|+.+.+... +||+|+++.+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 345789999999999999998874 45799999999999999887652 5789999998876544 899999998888
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+... ....+..+.+.+++++.++.
T Consensus 110 ~~~~--~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 110 WCDD--LSQALSELARVLKPGGLLAF 133 (240)
T ss_pred hccC--HHHHHHHHHHHcCCCcEEEE
Confidence 7633 44899999999986555554
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=5.2e-13 Score=102.47 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=82.8
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC--CCcccEEEE
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVM 119 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--~~~~D~i~~ 119 (161)
...++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++++.|+ ++.++++|+.+... ...||+|++
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEE
Confidence 3456789999999999999999885 346999999999999999999999988 78999999987642 237999999
Q ss_pred CCCCCCCCC--------------------CcchHHHHHHHhhcCCcEEEE
Q 031325 120 NPPFGTRKK--------------------GVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 120 ~~p~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 149 (161)
|||+..... ....++++.+.+.+++++.++
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 999753210 012357888899998544444
No 121
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=5.2e-13 Score=95.60 Aligned_cols=141 Identities=20% Similarity=0.121 Sum_probs=99.5
Q ss_pred hhhhhhhhcccccccCCcccccCCCCChhH-HHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCCh
Q 031325 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHI-ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (161)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~ 81 (161)
+.+++..+..+.-|-+..+.......+.+. +.-..+.+.+.++...|++|||+|||+|+.+..++..|...|+|+|.++
T Consensus 69 ~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~ 148 (315)
T PF08003_consen 69 RQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP 148 (315)
T ss_pred HHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh
Confidence 456677777777787765555444444444 4444445555556779999999999999999999999988999999998
Q ss_pred HHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCc
Q 031325 82 DSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 82 ~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 145 (161)
....+.+-..+-.+. .+......+++++....||+|+|-..+.|..... ..+..+...++++
T Consensus 149 lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLYHrr~Pl--~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 149 LFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLYHRRSPL--DHLKQLKDSLRPG 212 (315)
T ss_pred HHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehhccCCHH--HHHHHHHHhhCCC
Confidence 877664433333332 2333334666666644999999999977765554 8888888888743
No 122
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.51 E-value=8.5e-13 Score=93.19 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=80.6
Q ss_pred CCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccC-------CCcccE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW-------RGHVDT 116 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~~D~ 116 (161)
++++|||+|||+|+.++.++.. +..+++++|+++++++.|+++++..++ +++++.+|+.+... ..+||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 5789999999999988888764 356999999999999999999999998 69999999987421 237999
Q ss_pred EEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 117 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 117 i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
|+++.. ...+..+++.+.+.+++++.+++
T Consensus 148 VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 148 AFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCeEEEE
Confidence 999865 35556888999999986555554
No 123
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.51 E-value=5.9e-13 Score=94.96 Aligned_cols=92 Identities=30% Similarity=0.419 Sum_probs=70.7
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~~ 124 (161)
.++.+|||+|||+|.+++.+++.+..+++|+|+|+.+++.|+++...+++ .+.+..++. +||+|++|...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH-
Confidence 36789999999999999998887766799999999999999999988775 223222221 69999998652
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
......+..+.+.++++++++.
T Consensus 190 ----~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 190 ----NPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred ----HHHHHHHHHHHHhcCCCcEEEE
Confidence 2234678889999986555554
No 124
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.50 E-value=3.1e-13 Score=99.35 Aligned_cols=122 Identities=25% Similarity=0.368 Sum_probs=84.7
Q ss_pred CcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--------CCCeEEEEeCChHHHHHHHHH
Q 031325 19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--------GADQVIAIDIDSDSLELASEN 90 (161)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--------~~~~v~~~D~~~~~~~~a~~~ 90 (161)
.+...++|.||..++..++..+ ...++.+|+|++||+|.+...+.+. ...+++|+|+++.++.+++.+
T Consensus 21 ~~k~~G~~~TP~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 21 SRKKLGQFYTPREIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TTTSCGGC---HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHH
T ss_pred hccccceeehHHHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhh
Confidence 3557789999999999888777 3346778999999999999888762 455999999999999999988
Q ss_pred HhhcCC---ceEEEEcccccccCC---CcccEEEECCCCCCC--CC-----------------CcchHHHHHHHhhcCC
Q 031325 91 AADLEL---DIDFVQCDIRNLEWR---GHVDTVVMNPPFGTR--KK-----------------GVDMDFLSMALKVASQ 144 (161)
Q Consensus 91 ~~~~~~---~~~~~~~d~~~~~~~---~~~D~i~~~~p~~~~--~~-----------------~~~~~~~~~~~~~~~~ 144 (161)
+.-.+. ...+..+|....+.. ..||+|++||||... .. .....++..+...++.
T Consensus 97 l~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~ 175 (311)
T PF02384_consen 97 LLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP 175 (311)
T ss_dssp HHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE
T ss_pred hhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc
Confidence 776665 345888888765543 289999999999865 10 1112477888888873
No 125
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.50 E-value=2.7e-13 Score=94.51 Aligned_cols=100 Identities=19% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHh-------------hcCCceEEEEcccccccCC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-------------DLELDIDFVQCDIRNLEWR 111 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~-------------~~~~~~~~~~~d~~~~~~~ 111 (161)
...++.+||++|||.|....+||.+|. +|+|+|+|+.+++.+.+... ..+.++++.++|+.+++..
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 333567999999999999999999988 89999999999999865221 1123789999999998642
Q ss_pred ----CcccEEEECCCCCCCCCCcchHHHHHHHhhcCCc
Q 031325 112 ----GHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 112 ----~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 145 (161)
..||+|+--..|.........++.+.+.++++++
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg 156 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN 156 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence 2799999888888888898999999999999853
No 126
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.49 E-value=9.8e-15 Score=89.81 Aligned_cols=93 Identities=23% Similarity=0.205 Sum_probs=61.3
Q ss_pred EEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc---CCCcccEEEECCCCCCCC
Q 031325 53 ADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE---WRGHVDTVVMNPPFGTRK 127 (161)
Q Consensus 53 lD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---~~~~~D~i~~~~p~~~~~ 127 (161)
||+|||+|.++..+.+. +..+++|+|+|+.+++.+++++...+. +......+..+.. ...+||+|++...+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999876 456999999999999999888887664 4444444444432 22389999999999998
Q ss_pred CCcchHHHHHHHhhcCCcEE
Q 031325 128 KGVDMDFLSMALKVASQAVY 147 (161)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~ 147 (161)
.....+++.+.+.+++++.
T Consensus 80 -~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-E
T ss_pred -hhHHHHHHHHHHHcCCCCC
Confidence 4455999999999987654
No 127
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.49 E-value=9.6e-13 Score=100.51 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=82.2
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCce--EEEEcccccccC---CCcccEEE
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDI--DFVQCDIRNLEW---RGHVDTVV 118 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~--~~~~~d~~~~~~---~~~~D~i~ 118 (161)
.+.++.+|||+|||+|+.+..+++. +..+++++|+++.+++.+++++++.|+.+ .+..+|...... ..+||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 4557889999999999999999885 44599999999999999999999988743 446677665432 23799999
Q ss_pred ECCCCCCCCC----C----------------cchHHHHHHHhhcCC---cEEEEecc
Q 031325 119 MNPPFGTRKK----G----------------VDMDFLSMALKVASQ---AVYSLHKT 152 (161)
Q Consensus 119 ~~~p~~~~~~----~----------------~~~~~~~~~~~~~~~---~~~~~~~~ 152 (161)
+|+|+.-... . .+.+.+..+.+.+++ .+|+.|..
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999764311 1 135788899999985 45555544
No 128
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.48 E-value=5.1e-13 Score=97.68 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=62.7
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc-CC--ceEEEE-ccccccc-----CCCcccEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-EL--DIDFVQ-CDIRNLE-----WRGHVDTV 117 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~-~d~~~~~-----~~~~~D~i 117 (161)
.+.++||+|||+|.+...++.+ ...+++|+|+++.+++.|+++++.+ ++ ++.++. .|..++. ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999888777654 4569999999999999999999998 67 566654 3333222 12389999
Q ss_pred EECCCCCCCCC
Q 031325 118 VMNPPFGTRKK 128 (161)
Q Consensus 118 ~~~~p~~~~~~ 128 (161)
+|||||+....
T Consensus 194 vcNPPf~~s~~ 204 (321)
T PRK11727 194 LCNPPFHASAA 204 (321)
T ss_pred EeCCCCcCcch
Confidence 99999987533
No 129
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.47 E-value=7.1e-13 Score=95.16 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=80.5
Q ss_pred CCCeEEEecCCcch----HHHHHHHc-C-----CCeEEEEeCChHHHHHHHHHHhh------c-----------------
Q 031325 48 SNKVVADFGCGCGT----LGAAATLL-G-----ADQVIAIDIDSDSLELASENAAD------L----------------- 94 (161)
Q Consensus 48 ~~~~vlD~g~G~G~----~~~~la~~-~-----~~~v~~~D~~~~~~~~a~~~~~~------~----------------- 94 (161)
++.+|+|+|||+|. +++.+++. + ..+|+|+|+|+.+++.|++..-. .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 45555553 1 24899999999999999975310 0
Q ss_pred ---CC--ceEEEEcccccccCC-CcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 95 ---EL--DIDFVQCDIRNLEWR-GHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 95 ---~~--~~~~~~~d~~~~~~~-~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
++ ++.|.++|+.+.+.. .+||+|+|...+++.+.....++++.+.+.++++++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 01 578999999987653 4899999988888887777779999999999977776663
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-12 Score=89.10 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=77.9
Q ss_pred ccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEE
Q 031325 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFV 101 (161)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~ 101 (161)
.+++.+.+.....|++.+ ...++.+|||+|||+|+.+.-+++... +|+.+|..+...+.|+++++..|. |+.+.
T Consensus 51 ~gqtis~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~ 125 (209)
T COG2518 51 CGQTISAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVR 125 (209)
T ss_pred CCceecCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEE
Confidence 444445556666665554 445899999999999999999999854 999999999999999999999999 99999
Q ss_pred EcccccccCC-CcccEEEECCC
Q 031325 102 QCDIRNLEWR-GHVDTVVMNPP 122 (161)
Q Consensus 102 ~~d~~~~~~~-~~~D~i~~~~p 122 (161)
++|...--.. ..||.|+....
T Consensus 126 ~gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 126 HGDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred ECCcccCCCCCCCcCEEEEeec
Confidence 9999884443 49999998554
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.47 E-value=1.5e-12 Score=91.90 Aligned_cols=110 Identities=26% Similarity=0.357 Sum_probs=84.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC--CCcc
Q 031325 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW--RGHV 114 (161)
Q Consensus 37 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~ 114 (161)
+..+.......++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+.++.+...+..+.+. ...|
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCc
Confidence 34444443455778999999999999999988754 89999999999999999888776677888888877642 2389
Q ss_pred cEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 115 DTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 115 D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
|+|+++..+.+.. .....++.+.+.+++++.++
T Consensus 116 D~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 116 DVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred cEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEE
Confidence 9999987777653 33478899999997544433
No 132
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.47 E-value=7.3e-14 Score=97.50 Aligned_cols=97 Identities=26% Similarity=0.352 Sum_probs=75.1
Q ss_pred CCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-------ceEEEEcccccccCCCcccEEEECC
Q 031325 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRGHVDTVVMNP 121 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~D~i~~~~ 121 (161)
|.+|||+|||+|-++..||+.|. +|+|+|+++.+++.|++....... ++++.+.|+++... .||+|+|.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~--~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG--KFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc--ccceeeeHH
Confidence 57899999999999999999975 999999999999999998433222 24455555555433 699999988
Q ss_pred CCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 122 PFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 122 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+.|.. ....+++.+++.+++++.+..
T Consensus 167 vleHV~--dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 167 VLEHVK--DPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred HHHHHh--CHHHHHHHHHHHhCCCCceEe
Confidence 888753 334899999999986544443
No 133
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.46 E-value=8.2e-14 Score=95.69 Aligned_cols=110 Identities=23% Similarity=0.258 Sum_probs=91.1
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccccCC--C-cccEE
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWR--G-HVDTV 117 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~--~-~~D~i 117 (161)
.....+.+|||.|.|-|+.+++.+++|+.+|+.+|.||..+++|+.|--..++ .+.++.||+.+.... + +||+|
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 34557899999999999999999999888999999999999999988776665 579999999886442 3 89999
Q ss_pred EECCC-CCCCCCCcchHHHHHHHhhcCCcEEEEeccC
Q 031325 118 VMNPP-FGTRKKGVDMDFLSMALKVASQAVYSLHKTS 153 (161)
Q Consensus 118 ~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (161)
+.||| |+...+--..++.+++.|+|++++-+.+-.+
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 99999 6666644445899999999997776666433
No 134
>PRK00811 spermidine synthase; Provisional
Probab=99.45 E-value=1.4e-12 Score=94.57 Aligned_cols=105 Identities=13% Similarity=0.214 Sum_probs=80.0
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc------CCceEEEEcccccccCC--CcccEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRNLEWR--GHVDTVV 118 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~--~~~D~i~ 118 (161)
.+.+||++|||+|..+.+++++ +..+|+++|+++.+++.+++++... .-+++++.+|+...... .+||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 5679999999999999999887 5679999999999999999988642 12789999999875432 3899999
Q ss_pred ECC--CCCCCCCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 119 MNP--PFGTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 119 ~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
++. |+.....-...++++.+.+.|++++.++.+.
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 985 4432221123578899999998555555543
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=92.06 Aligned_cols=95 Identities=26% Similarity=0.401 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEc---
Q 031325 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQC--- 103 (161)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~--- 103 (161)
+++++.+++.+... ....+..++|+|||+|.++..++.. +..+++++|.++.++.+|.+|.++.++ .+.+++-
T Consensus 131 EE~V~~Vid~~~~~-~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 131 EEWVEAVIDALNNS-EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHhhh-hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 45555555544433 3445668999999999999998764 667999999999999999999999887 5666643
Q ss_pred -ccccccC--CCcccEEEECCCCCC
Q 031325 104 -DIRNLEW--RGHVDTVVMNPPFGT 125 (161)
Q Consensus 104 -d~~~~~~--~~~~D~i~~~~p~~~ 125 (161)
|..+... ..+.|++++||||-.
T Consensus 210 ~d~~~~~~l~~~~~dllvsNPPYI~ 234 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNPPYIR 234 (328)
T ss_pred cccccccccccCceeEEecCCCccc
Confidence 3333221 138999999999954
No 136
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2e-12 Score=90.21 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=90.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-c-eEEEEcccccccCCCc
Q 031325 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-D-IDFVQCDIRNLEWRGH 113 (161)
Q Consensus 38 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~~~~~~ 113 (161)
..+....+..++.+|+|.|.|+|.++..++.. +.++|+.+|+.++.++.|++|++..++ + +++..+|+.+......
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 34555567789999999999999999999974 457999999999999999999999988 4 9999999998766669
Q ss_pred ccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 114 VDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 114 ~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
||+|+.|.| ... ++++++++.++++..+.+..
T Consensus 164 vDav~LDmp----~PW---~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 164 VDAVFLDLP----DPW---NVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cCEEEEcCC----ChH---HHHHHHHHHhCCCcEEEEEc
Confidence 999999888 322 88999999998666655543
No 137
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.45 E-value=2.6e-12 Score=94.26 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=84.9
Q ss_pred HHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccE
Q 031325 40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDT 116 (161)
Q Consensus 40 ~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~ 116 (161)
+.......++.++||+|||+|.+++.+++. +..+++++|. +.+++.+++++...++ +++++.+|+.+.+.. .+|+
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~ 218 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADA 218 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCE
Confidence 444444456689999999999999999986 4458999998 8999999999998887 689999999865443 4799
Q ss_pred EEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 117 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 117 i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
|++.-..+..........++++.+.+++++.++.
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 8876666655555556899999999985444433
No 138
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.45 E-value=1e-12 Score=90.73 Aligned_cols=98 Identities=20% Similarity=0.246 Sum_probs=81.0
Q ss_pred CCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccC-------CCcccE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW-------RGHVDT 116 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~~D~ 116 (161)
.+.+|||+||++|+.++++++. ...+++.+|++++..+.|+++++..|+ +++++.+|+.+... ..+||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 5689999999999999999975 246999999999999999999999998 79999999987422 127999
Q ss_pred EEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 117 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 117 i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
|+.|.. ...+..+++.+.+.+++++.++.
T Consensus 125 VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 125 VFIDAD-----KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEEST-----GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEccc-----ccchhhHHHHHhhhccCCeEEEE
Confidence 999886 57788999999999985444444
No 139
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.44 E-value=1.3e-12 Score=93.43 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=76.8
Q ss_pred ccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEE
Q 031325 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQ 102 (161)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~ 102 (161)
...|..++.+...+++.+ ...++.+|||+|||+|.++..+++.+. .++++|+++.+++.++.+... .-++++++
T Consensus 8 gq~fl~d~~i~~~i~~~~----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~ 81 (253)
T TIGR00755 8 GQNFLIDESVIQKIVEAA----NVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIE 81 (253)
T ss_pred CCccCCCHHHHHHHHHhc----CCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEE
Confidence 344666777777666654 344778999999999999999999864 799999999999999887754 22789999
Q ss_pred cccccccCCCccc---EEEECCCCCC
Q 031325 103 CDIRNLEWRGHVD---TVVMNPPFGT 125 (161)
Q Consensus 103 ~d~~~~~~~~~~D---~i~~~~p~~~ 125 (161)
+|+.+.+.. .+| +|++|+||+.
T Consensus 82 ~D~~~~~~~-~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 82 GDALKVDLP-DFPKQLKVVSNLPYNI 106 (253)
T ss_pred CchhcCChh-HcCCcceEEEcCChhh
Confidence 999887654 466 9999999875
No 140
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.44 E-value=1.7e-12 Score=86.35 Aligned_cols=94 Identities=22% Similarity=0.341 Sum_probs=72.5
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-CCcccEEEECCCCC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-RGHVDTVVMNPPFG 124 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~i~~~~p~~ 124 (161)
..++.+|||+|||+|.++..+++.+. +++|+|+++.+++. ........+...... ..+||+|+++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 35778999999999999999988877 99999999999987 123333333333322 33899999999999
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+... ...+++.+.+.++++++++..
T Consensus 90 ~~~d--~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 90 HLPD--PEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp GSSH--HHHHHHHHHHCEEEEEEEEEE
T ss_pred hccc--HHHHHHHHHHhcCCCCEEEEE
Confidence 8763 559999999999866665553
No 141
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.44 E-value=3.2e-12 Score=88.48 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~ 111 (161)
.+...+...+...++.+|||+|||+|+.+..++.. + ...|+++|.++..++.|++++...+. ++.++++|...-...
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 34444444445668999999999999999999986 3 34799999999999999999999999 899999998774433
Q ss_pred C-cccEEEECCCC
Q 031325 112 G-HVDTVVMNPPF 123 (161)
Q Consensus 112 ~-~~D~i~~~~p~ 123 (161)
. .||.|++....
T Consensus 139 ~apfD~I~v~~a~ 151 (209)
T PF01135_consen 139 EAPFDRIIVTAAV 151 (209)
T ss_dssp G-SEEEEEESSBB
T ss_pred CCCcCEEEEeecc
Confidence 3 89999997664
No 142
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.43 E-value=4.8e-13 Score=90.08 Aligned_cols=96 Identities=21% Similarity=0.314 Sum_probs=75.9
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccccc--CCC-cccEEEECCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--WRG-HVDTVVMNPPFG 124 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~-~~D~i~~~~p~~ 124 (161)
++.+|||+|||.|.+...|.+....+.+|+|+++..+..+.++ | +.++++|+.+-. ..+ +||+||++-...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G--v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G--VSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C--CCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 6899999999999999999875455999999999988766443 3 779999997732 223 999999988877
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+..... +.++++.|+.+..+....|
T Consensus 87 ~~~~P~--~vL~EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 87 AVRRPD--EVLEEMLRVGRRAIVSFPN 111 (193)
T ss_pred hHhHHH--HHHHHHHHhcCeEEEEecC
Confidence 765444 8899999999866655543
No 143
>PLN02672 methionine S-methyltransferase
Probab=99.42 E-value=1.7e-12 Score=107.03 Aligned_cols=98 Identities=21% Similarity=0.229 Sum_probs=75.2
Q ss_pred CCChhHHHHHHHHHHhhcCC--CCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-------
Q 031325 27 PTGPHIASRMLYTAENSFGD--VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL------- 96 (161)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~------- 96 (161)
..|+...+.+++. +...+. .++.+|+|+|||+|.+++.+++. +..+++++|+|+.+++.|++|++.+++
T Consensus 96 LIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 96 FIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred ccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 3556666666666 332221 23568999999999999999886 446999999999999999999987431
Q ss_pred ----------ceEEEEcccccccCC-C-cccEEEECCCCCC
Q 031325 97 ----------DIDFVQCDIRNLEWR-G-HVDTVVMNPPFGT 125 (161)
Q Consensus 97 ----------~~~~~~~d~~~~~~~-~-~~D~i~~~~p~~~ 125 (161)
+++++++|+.+.... . +||+|++||||-.
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~ 215 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQIL 215 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCCcCC
Confidence 589999999875532 2 6999999999843
No 144
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.42 E-value=2.7e-12 Score=103.29 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhcCC-CCCCeEEEecCCcchHHHHHHHcC----------------------------------------
Q 031325 32 IASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLG---------------------------------------- 70 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~la~~~---------------------------------------- 70 (161)
+.+.+...++...+- .++..++|++||+|++.++.+...
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 333444444433332 356799999999999999987520
Q ss_pred ---CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC---cccEEEECCCCCCCC
Q 031325 71 ---ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG---HVDTVVMNPPFGTRK 127 (161)
Q Consensus 71 ---~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~---~~D~i~~~~p~~~~~ 127 (161)
..+++|+|+++.+++.|++|+..+|+ .+.+.++|+.++.... .+|+|++||||+...
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~ 317 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL 317 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCcc
Confidence 12699999999999999999999998 5899999998875432 699999999998753
No 145
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.42 E-value=3.7e-12 Score=95.60 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhhcCCC-CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccc
Q 031325 31 HIASRMLYTAENSFGDV-SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 107 (161)
...+.+...+...+... .+.+|||++||+|.+++.++.. +...|+++|+++.+++.+++|++.+++ ++.+.++|+..
T Consensus 39 ~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~ 118 (382)
T PRK04338 39 ELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA 118 (382)
T ss_pred cchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH
Confidence 44444444444333221 3468999999999999999864 556999999999999999999999888 67899999977
Q ss_pred ccC-CCcccEEEECCCCCCCCCCcchHHHHHHHhhcC--CcEEEEe
Q 031325 108 LEW-RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLH 150 (161)
Q Consensus 108 ~~~-~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 150 (161)
+.. ...||+|++||| +....+++.+.+.++ +.+|+..
T Consensus 119 ~l~~~~~fD~V~lDP~------Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 119 LLHEERKFDVVDIDPF------GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred HHhhcCCCCEEEECCC------CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 543 347999999987 223477777555554 5666664
No 146
>PLN02476 O-methyltransferase
Probab=99.42 E-value=8.5e-12 Score=89.48 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=82.1
Q ss_pred CCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccC-------CCcccE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW-------RGHVDT 116 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~~D~ 116 (161)
.+++|||+|+|+|+.+++++.. ....++++|.+++.++.|+++++..|+ +++++.+|+.+... ..+||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 6789999999999999999974 245899999999999999999999998 79999999977422 137999
Q ss_pred EEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 117 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 117 i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
|+.+++ +..+..+++.+.+.+++++.++.
T Consensus 198 VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 198 AFVDAD-----KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEE
Confidence 999987 46678999999999985444443
No 147
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.41 E-value=4.9e-12 Score=77.36 Aligned_cols=98 Identities=27% Similarity=0.360 Sum_probs=77.2
Q ss_pred eEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC--CCcccEEEECCCCCCCC
Q 031325 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--RGHVDTVVMNPPFGTRK 127 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--~~~~D~i~~~~p~~~~~ 127 (161)
+++|+|||+|..+..+++....+++++|+++..+..+++.....+. ++.+..+|+.+... ..++|+|++++++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 5899999999999999885566999999999999998854443333 78899999988764 2389999999998763
Q ss_pred CCcchHHHHHHHhhcCCcEEEE
Q 031325 128 KGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
......+++.+.+.+++.++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~ 101 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLV 101 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEE
Confidence 3455688889888887544443
No 148
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.41 E-value=5.6e-12 Score=92.24 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=79.1
Q ss_pred CCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccc-cCCCc-----ccEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL-EWRGH-----VDTV 117 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~-~~~~~-----~D~i 117 (161)
++.+|||+|||+|..+..+++.. ..+++++|+|+.|++.+++++... ++++.++++|+.+. ..... ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 56789999999999999998763 359999999999999999887653 34678899999763 22222 2345
Q ss_pred EECCCCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 118 VMNPPFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 118 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
++..++++........+++++.+.+++++.++
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 56677888777777799999999998655554
No 149
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=3.6e-12 Score=86.20 Aligned_cols=94 Identities=22% Similarity=0.232 Sum_probs=78.2
Q ss_pred CeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceE-EEEcccccccC-CC-cccEEEECCCCCC
Q 031325 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DID-FVQCDIRNLEW-RG-HVDTVVMNPPFGT 125 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~-~~~~d~~~~~~-~~-~~D~i~~~~p~~~ 125 (161)
..+|++|||+|..-...--.+.++|+++|.++.|-+.+.+.+.++.. ++. ++.++.++++. .+ ++|.|++ .|..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~--TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVC--TLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEE--EEEE
Confidence 46899999999987776644566999999999999999998887755 676 99999999883 33 9999999 5555
Q ss_pred CCCCcchHHHHHHHhhcCCc
Q 031325 126 RKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~ 145 (161)
.+.....+.+++..++|+++
T Consensus 156 CSve~~~k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPG 175 (252)
T ss_pred eccCCHHHHHHHHHHhcCCC
Confidence 57778889999999999843
No 150
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.40 E-value=2e-12 Score=93.08 Aligned_cols=102 Identities=29% Similarity=0.356 Sum_probs=73.4
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccccC----CCcccEEEEC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEW----RGHVDTVVMN 120 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~----~~~~D~i~~~ 120 (161)
.+++|||+.|-+|++++.++..|+.+|+.+|.|..+++.+++|+..+++ +++++.+|+.+... ..+||+||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 6789999999999999999888888999999999999999999999886 68899999987432 2389999999
Q ss_pred CC-CCCCCCC---cchHHHHHHHhhcCCcEEEE
Q 031325 121 PP-FGTRKKG---VDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 121 ~p-~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 149 (161)
|| |...... .+.+.+..+.++++++++++
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~ 235 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLL 235 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 99 4332222 22345666666666444443
No 151
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.40 E-value=1.3e-11 Score=90.58 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=68.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC-
Q 031325 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG- 112 (161)
Q Consensus 37 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~- 112 (161)
...+.......++.+|||+|||+|.++..+++.. ...|+++|+++.+++.|+++++..+. ++.++.+|..+.....
T Consensus 69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 3334444445577899999999999999999863 23799999999999999999998888 7899999987654433
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
.||+|+++..
T Consensus 149 ~fD~Ii~~~g 158 (322)
T PRK13943 149 PYDVIFVTVG 158 (322)
T ss_pred CccEEEECCc
Confidence 7999999643
No 152
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4e-12 Score=89.86 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=80.2
Q ss_pred cccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEE
Q 031325 22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV 101 (161)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~ 101 (161)
...+|..+..+...+++ .....+++.|+|+|+|.|.++..|++++. .|+++|+|+.+++..++.....+ +++++
T Consensus 8 ~GQnFL~d~~v~~kIv~----~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~-n~~vi 81 (259)
T COG0030 8 LGQNFLIDKNVIDKIVE----AANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYD-NLTVI 81 (259)
T ss_pred cccccccCHHHHHHHHH----hcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccccc-ceEEE
Confidence 34455566666555544 44445788999999999999999999865 89999999999999988876322 89999
Q ss_pred EcccccccCCC--cccEEEECCCCCCC
Q 031325 102 QCDIRNLEWRG--HVDTVVMNPPFGTR 126 (161)
Q Consensus 102 ~~d~~~~~~~~--~~D~i~~~~p~~~~ 126 (161)
.+|+.+.+... .++.|++|.||+..
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVANLPYNIS 108 (259)
T ss_pred eCchhcCcchhhcCCCEEEEcCCCccc
Confidence 99999988876 68999999999864
No 153
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.40 E-value=1.3e-11 Score=86.35 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=80.4
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcCC--CeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNP 121 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~ 121 (161)
...++.+|||+|||+|..+..+++... .+++++|+++.+++.++++.. ...++.+..+|+.+.+... .||+|+++.
T Consensus 36 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 36 GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 344778999999999999999988643 489999999999999998876 2226889999998876543 899999977
Q ss_pred CCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 122 PFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 122 p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
.+++.. .....++.+.+.+++++.++
T Consensus 115 ~~~~~~--~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 115 GLRNVT--DIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred eeCCcc--cHHHHHHHHHHHcCCCcEEE
Confidence 666543 34588999999998555444
No 154
>PRK04457 spermidine synthase; Provisional
Probab=99.40 E-value=4.7e-12 Score=90.81 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=77.8
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC--CcccEEEECCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR--GHVDTVVMNPP 122 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~--~~~D~i~~~~p 122 (161)
++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+. +++++.+|+.+.... .+||+|++|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 5678999999999999999875 456999999999999999999865442 789999999765332 2799999984
Q ss_pred CCCC---CCCcchHHHHHHHhhcCCcEEEEe
Q 031325 123 FGTR---KKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 123 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
|+.. ..-...++++.+.+.+++++.++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 3211 112246999999999985444443
No 155
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.39 E-value=1.4e-11 Score=86.42 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=81.9
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC--CcccEEEECCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR--GHVDTVVMNPPF 123 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~--~~~D~i~~~~p~ 123 (161)
..+.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++...+. ++.+..+|+.+.+.. .+||+|+++..+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3577999999999999999988755 799999999999999999888777 688999998876544 389999998777
Q ss_pred CCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 124 GTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
++.. ....++..+.+.++++++++.
T Consensus 123 ~~~~--~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 123 EHVP--DPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred HhCC--CHHHHHHHHHHhcCCCcEEEE
Confidence 6653 334788999999985544443
No 156
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.39 E-value=5.2e-12 Score=86.90 Aligned_cols=92 Identities=24% Similarity=0.381 Sum_probs=71.7
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc-cc-CCC-cccEEEECCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN-LE-WRG-HVDTVVMNPPFG 124 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~-~~D~i~~~~p~~ 124 (161)
++.+|||+|||+|.++..+++.....++|+|+++.+++.+++. +++++++|+.+ ++ ... +||+|+++.+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 5679999999999999999876445889999999999887642 36788888865 32 223 899999999998
Q ss_pred CCCCCcchHHHHHHHhhcCCcEE
Q 031325 125 TRKKGVDMDFLSMALKVASQAVY 147 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
+... ....++++.+.++.++.
T Consensus 87 ~~~d--~~~~l~e~~r~~~~~ii 107 (194)
T TIGR02081 87 ATRN--PEEILDEMLRVGRHAIV 107 (194)
T ss_pred cCcC--HHHHHHHHHHhCCeEEE
Confidence 8643 44788888888875433
No 157
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.39 E-value=9.3e-12 Score=89.91 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-C---CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc
Q 031325 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G---ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (161)
..+.+...+.... ..++.+|||+|||+|.++..+++. + ...++|+|+|+.+++.|+++.. ++.+..+|+.+
T Consensus 70 l~~~i~~~l~~~l-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----~~~~~~~d~~~ 144 (272)
T PRK11088 70 LRDAVANLLAERL-DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----QVTFCVASSHR 144 (272)
T ss_pred HHHHHHHHHHHhc-CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----CCeEEEeeccc
Confidence 3344433333332 235578999999999999998864 2 2379999999999999977642 57899999988
Q ss_pred ccCCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 108 LEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 108 ~~~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
++... +||+|++.. . ...++++.++++++++++.
T Consensus 145 lp~~~~sfD~I~~~~--~-------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 145 LPFADQSLDAIIRIY--A-------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred CCCcCCceeEEEEec--C-------CCCHHHHHhhccCCCEEEE
Confidence 87655 899999732 2 1345778889985555544
No 158
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.38 E-value=4.1e-12 Score=88.60 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=81.7
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh------------cCC-ceEEEEcccccccCC
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD------------LEL-DIDFVQCDIRNLEWR 111 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~------------~~~-~~~~~~~d~~~~~~~ 111 (161)
...++.+||.+|||.|.....|+++|. +|+|+|+|+.+++.+.+.... ... ++++.++|+.++...
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 444667999999999999999999987 999999999999998443221 011 578999999998776
Q ss_pred C--cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEE
Q 031325 112 G--HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVY 147 (161)
Q Consensus 112 ~--~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
. +||+|+=-..|.-.+.....++.+.+.+++++++.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 5 79999988888888889999999999999985444
No 159
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.37 E-value=3.8e-12 Score=99.61 Aligned_cols=105 Identities=26% Similarity=0.342 Sum_probs=78.8
Q ss_pred cccCCCCChhHHHHHHHHHHhhcCC---CCCCeEEEecCCcchHHHHHHHcC---------CCeEEEEeCChHHHHHHHH
Q 031325 22 ELEQYPTGPHIASRMLYTAENSFGD---VSNKVVADFGCGCGTLGAAATLLG---------ADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vlD~g~G~G~~~~~la~~~---------~~~v~~~D~~~~~~~~a~~ 89 (161)
..++|.||..+++.|++.+....+. ....+|+|+|||+|.+...++.+. ...++|+|+++.+++.++.
T Consensus 2 ~~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 2 AYGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred CCcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 4678999999999999988654221 145689999999999999887641 1489999999999999999
Q ss_pred HHhhcCC-ceEEEEccccccc----C--CCcccEEEECCCCCCC
Q 031325 90 NAADLEL-DIDFVQCDIRNLE----W--RGHVDTVVMNPPFGTR 126 (161)
Q Consensus 90 ~~~~~~~-~~~~~~~d~~~~~----~--~~~~D~i~~~~p~~~~ 126 (161)
++...+. .+.+...|..... . .+.||+|++||||...
T Consensus 82 ~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 82 LLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHhhcCCCCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 9877652 4455555543311 1 1279999999999854
No 160
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.37 E-value=2e-11 Score=91.30 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=80.2
Q ss_pred CCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC--CcccEEEECCCC
Q 031325 49 NKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR--GHVDTVVMNPPF 123 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~--~~~D~i~~~~p~ 123 (161)
+.+|||+.||+|..++.++.. +...|+++|+|+.+++.+++|++.++. ++.+.++|+...... ..||+|+.|| |
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 358999999999999999986 567999999999999999999998887 689999999886443 3799999999 5
Q ss_pred CCCCCCcchHHHHHHHhhcC--CcEEEEec
Q 031325 124 GTRKKGVDMDFLSMALKVAS--QAVYSLHK 151 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 151 (161)
+ ....+++.+.+.++ +.+++.+.
T Consensus 124 G-----s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 G-----TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C-----CcHHHHHHHHHhcccCCEEEEEec
Confidence 3 22378888888876 46666654
No 161
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.37 E-value=9.5e-12 Score=85.41 Aligned_cols=93 Identities=28% Similarity=0.428 Sum_probs=69.6
Q ss_pred CCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~p~ 123 (161)
.++.+|+|+.||.|.+++.+|+. ....|+++|+||.+++.+++|++.+++ .+..+++|+.++.....+|-|+++.|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp- 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP- 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh-
Confidence 46889999999999999999984 355899999999999999999999988 68899999999876559999999988
Q ss_pred CCCCCCcchHHHHHHHhhcCCc
Q 031325 124 GTRKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~ 145 (161)
....+++..+...++.+
T Consensus 179 -----~~~~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 179 -----ESSLEFLDAALSLLKEG 195 (200)
T ss_dssp -----SSGGGGHHHHHHHEEEE
T ss_pred -----HHHHHHHHHHHHHhcCC
Confidence 23337888888888744
No 162
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3e-11 Score=80.17 Aligned_cols=79 Identities=27% Similarity=0.446 Sum_probs=69.5
Q ss_pred CCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~ 125 (161)
...-++|+|||+|..+-.+++. +.....++|+||.+++..++.++.++.++..++.|..+-...++.|++++||||..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence 3678999999999999999886 45589999999999999999999988889999999988544469999999999977
Q ss_pred C
Q 031325 126 R 126 (161)
Q Consensus 126 ~ 126 (161)
.
T Consensus 123 t 123 (209)
T KOG3191|consen 123 T 123 (209)
T ss_pred C
Confidence 5
No 163
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.35 E-value=3.3e-11 Score=83.43 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=83.3
Q ss_pred CCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEE-cccccccCC---CcccEEE
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQ-CDIRNLEWR---GHVDTVV 118 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~-~d~~~~~~~---~~~D~i~ 118 (161)
..+++|||+|.+.|+.++++|.. + ..+++++|.++++++.|++++++.|+ ++..+. +|..+.... ++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 36789999999999999999985 3 56999999999999999999999999 577888 588775443 3999999
Q ss_pred ECCCCCCCCCCcchHHHHHHHhhcCC-cEEEEec
Q 031325 119 MNPPFGTRKKGVDMDFLSMALKVASQ-AVYSLHK 151 (161)
Q Consensus 119 ~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 151 (161)
.|.- +..++++++.+.+++++ ++.+..|
T Consensus 138 IDad-----K~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 IDAD-----KADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EeCC-----hhhCHHHHHHHHHHhCCCcEEEEee
Confidence 9765 67788999999999985 4444444
No 164
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.34 E-value=3.2e-11 Score=85.26 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=81.3
Q ss_pred HHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccC--
Q 031325 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW-- 110 (161)
Q Consensus 37 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-- 110 (161)
+..+.......+|.+|+|.|.|+|.++..+++. +.++|+..|.+++.++.|+++++.+++ ++++.+.|+.+..+
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 344555567779999999999999999999975 456999999999999999999999998 79999999975332
Q ss_pred --CCcccEEEECCCCCCCCCCcchHHHHHHHhhc-CCcEEEEec
Q 031325 111 --RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA-SQAVYSLHK 151 (161)
Q Consensus 111 --~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (161)
...+|.|+.|.| ... ..+..+.+.| ++++.+.+.
T Consensus 109 ~~~~~~DavfLDlp----~Pw---~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 109 ELESDFDAVFLDLP----DPW---EAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp T-TTSEEEEEEESS----SGG---GGHHHHHHHE-EEEEEEEEE
T ss_pred cccCcccEEEEeCC----CHH---HHHHHHHHHHhcCCceEEEE
Confidence 137999999988 333 6778888888 556665554
No 165
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.32 E-value=4.4e-11 Score=83.12 Aligned_cols=94 Identities=22% Similarity=0.137 Sum_probs=67.3
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc--------C-CCc
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE--------W-RGH 113 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--------~-~~~ 113 (161)
..++.+|||+|||+|.++..+++.. ...|+|+|+++ + .+. ++.++++|+.+.. . ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 3567899999999999999998862 35999999998 1 112 5889999998853 2 238
Q ss_pred ccEEEECCCCCCCC-CCc--------chHHHHHHHhhcCCcEEEEe
Q 031325 114 VDTVVMNPPFGTRK-KGV--------DMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 114 ~D~i~~~~p~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~ 150 (161)
||+|++++..++.. ... ...+++.+.++|++++.++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99999987433221 111 13678999999985555544
No 166
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.32 E-value=2.2e-11 Score=85.56 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=76.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG 112 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~ 112 (161)
.+++.+.......+++.|||+|.|||.++..+.+.+. +|+++|+++.|+....++.+.... ..++..+|..+.+..
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4455566666667899999999999999999999865 999999999999999998877664 689999999987754
Q ss_pred cccEEEECCCCCCC
Q 031325 113 HVDTVVMNPPFGTR 126 (161)
Q Consensus 113 ~~D~i~~~~p~~~~ 126 (161)
.||.+++|.||...
T Consensus 123 ~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 123 RFDGCVSNLPYQIS 136 (315)
T ss_pred ccceeeccCCcccc
Confidence 69999999998763
No 167
>PTZ00146 fibrillarin; Provisional
Probab=99.31 E-value=8.1e-11 Score=84.73 Aligned_cols=101 Identities=16% Similarity=0.020 Sum_probs=71.1
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccccc----CCCcccEEE
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE----WRGHVDTVV 118 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~i~ 118 (161)
...++.+|||+|||+|.++..++.. + ...|+++|+++.+.+.+....+.. .++.++.+|+.... ....+|+|+
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEE
Confidence 4567889999999999999999987 2 458999999988664444433221 26889999986532 122799999
Q ss_pred ECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 119 MNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 119 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
++.. .......++.++.++|++..+++.
T Consensus 208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 208 ADVA----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EeCC----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9875 223333455678889986555444
No 168
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=3.9e-11 Score=88.07 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=81.8
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC-CcccEEEECCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-GHVDTVVMNPPFG 124 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~~D~i~~~~p~~ 124 (161)
+|.+|+|+.||.|.+++.+|+.+..+|+++|+||.+++.+++|++.+++ .+..+++|+.+.... ..+|-|+++.|-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~- 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK- 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-
Confidence 5899999999999999999998776799999999999999999999998 488999999998776 589999998883
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
...+++..+.+.++.++.+.+
T Consensus 267 -----~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 267 -----SAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred -----cchhhHHHHHHHhhcCcEEEE
Confidence 223677777777774444444
No 169
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.31 E-value=5.6e-11 Score=85.76 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=78.8
Q ss_pred CCCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccccC--CCcccEEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEW--RGHVDTVVM 119 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~--~~~~D~i~~ 119 (161)
.+.+||++|||+|..+..+++.. ..+++++|+++.+++.+++++...+ .+++++.+|..+... ..+||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999999988764 5699999999999999999875432 157888888866432 238999999
Q ss_pred CCCCCCCCCCc--chHHHHHHHhhcCCcEEEEecc
Q 031325 120 NPPFGTRKKGV--DMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 120 ~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
+++........ ..++++.+.+.|++++.++.+.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 98754322221 4588899999998655555543
No 170
>PRK01581 speE spermidine synthase; Validated
Probab=99.27 E-value=5.2e-11 Score=87.96 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHH--Hh---hc---CCceEEEEcccccccCC--Cccc
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASEN--AA---DL---ELDIDFVQCDIRNLEWR--GHVD 115 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~--~~---~~---~~~~~~~~~d~~~~~~~--~~~D 115 (161)
..+.+||++|||+|..+.++.+.+ ..+++++|+++.+++.|++. +. .. +-+++++.+|+.++... ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 356799999999999999888863 56999999999999999962 11 11 12789999999985433 2899
Q ss_pred EEEECCCCCCC---CCCcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 116 TVVMNPPFGTR---KKGVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 116 ~i~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
+|++|+|-... ..--..++++.+.+.|++++.+++...+
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99999763211 1122357899999999866666655443
No 171
>KOG2730 consensus Methylase [General function prediction only]
Probab=99.27 E-value=7.1e-12 Score=85.49 Aligned_cols=98 Identities=30% Similarity=0.384 Sum_probs=79.7
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEE
Q 031325 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQ 102 (161)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~ 102 (161)
..-+++..+..+...+.... ...+|+|..||.|+.++..+..+. .|+++|+||..+..|++|++-.|+ +++|++
T Consensus 74 fsvTpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 74 FSVTPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred EEeccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 33466667777766665442 456899999999999999988765 999999999999999999999999 899999
Q ss_pred cccccccCCC-----cccEEEECCCCCCC
Q 031325 103 CDIRNLEWRG-----HVDTVVMNPPFGTR 126 (161)
Q Consensus 103 ~d~~~~~~~~-----~~D~i~~~~p~~~~ 126 (161)
||+.++.... .+|+|+..||++-.
T Consensus 150 GD~ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 150 GDFLDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred chHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence 9999875543 45699999998753
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.27 E-value=1.8e-10 Score=81.63 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=81.9
Q ss_pred CCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC--------Cccc
Q 031325 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR--------GHVD 115 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~--------~~~D 115 (161)
..++|||+|+++|+.+++++.. ...+++++|.++...+.|+++++..|+ +++++.+|+.+.... .+||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 5679999999999999999874 245999999999999999999999997 899999999774321 3899
Q ss_pred EEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 116 TVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 116 ~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+|+.|.- +..+..+++.+.+.+++++.++.
T Consensus 159 ~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE
Confidence 9999865 56677999999999985555554
No 173
>PRK04148 hypothetical protein; Provisional
Probab=99.27 E-value=1.5e-10 Score=74.14 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=70.3
Q ss_pred HHHhhcCCCCCCeEEEecCCcch-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC--ccc
Q 031325 39 TAENSFGDVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG--HVD 115 (161)
Q Consensus 39 ~~~~~~~~~~~~~vlD~g~G~G~-~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~D 115 (161)
.+...++..++.+++|+|||+|. .+..|++.|. .|+++|+++.+++.++++. +.++.+|+++....- .+|
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC------CeEEECcCCCCCHHHHhcCC
Confidence 33333344466899999999996 8888998876 9999999999999887763 689999999876653 899
Q ss_pred EEEE-CCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 116 TVVM-NPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 116 ~i~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+|++ .|| .+.. ..+-++.+...--+++..
T Consensus 80 liysirpp-----~el~-~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 80 LIYSIRPP-----RDLQ-PFILELAKKINVPLIIKP 109 (134)
T ss_pred EEEEeCCC-----HHHH-HHHHHHHHHcCCCEEEEc
Confidence 9996 555 3444 334444444443444433
No 174
>PLN02366 spermidine synthase
Probab=99.26 E-value=1.3e-10 Score=85.04 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=80.1
Q ss_pred CCCCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhc--CC---ceEEEEcccccccC---CCcccEE
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL--EL---DIDFVQCDIRNLEW---RGHVDTV 117 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~~~--~~---~~~~~~~d~~~~~~---~~~~D~i 117 (161)
..+.+||++|||.|....++++++ ..+++.+|+++.+++.+++.+... ++ +++++.+|+..... ...||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 357899999999999999999874 569999999999999999987643 12 79999999866432 2379999
Q ss_pred EECCCCCCCC--CCcchHHHHHHHhhcCCcEEEEecc
Q 031325 118 VMNPPFGTRK--KGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 118 ~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
+++.+-.... .--..++++.+.+.|++++.++.+.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9986533221 1124578999999998655555443
No 175
>PRK03612 spermidine synthase; Provisional
Probab=99.26 E-value=7.2e-11 Score=92.21 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCC-CeEEEEeCChHHHHHHHHH--Hhhc-----C-CceEEEEcccccccCC--Cccc
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASEN--AADL-----E-LDIDFVQCDIRNLEWR--GHVD 115 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~-~~v~~~D~~~~~~~~a~~~--~~~~-----~-~~~~~~~~d~~~~~~~--~~~D 115 (161)
.++++|||+|||+|..+.++++++. .+++++|+|+++++.++++ +... + -+++++.+|..+.... ++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3567999999999999999988754 6999999999999999984 2211 1 2688999999875332 3899
Q ss_pred EEEECCCCCCCC---CCcchHHHHHHHhhcCCcEEEEecc
Q 031325 116 TVVMNPPFGTRK---KGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 116 ~i~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
+|++|+|..... .-...++++.+.+.+++++.++.+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999998864321 1223478999999998655555544
No 176
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.25 E-value=2e-10 Score=78.64 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccccc----
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE---- 109 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---- 109 (161)
+.+.........++.+|||+|||+|.++..+++. +..+++++|+++.+ .. .++.++++|+.+..
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~--~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI--ENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC--CCceEEEeeCCChhHHHH
Confidence 3333333334467889999999999999988875 34589999999864 11 15778888887642
Q ss_pred -----CCCcccEEEECCC--CC-CCCC------CcchHHHHHHHhhcCCcEEEEe
Q 031325 110 -----WRGHVDTVVMNPP--FG-TRKK------GVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 110 -----~~~~~D~i~~~~p--~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
...+||+|+++++ +. .... ......+..+.+.+++++.++.
T Consensus 90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 90 IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 1227999999853 21 1110 1124678889999985444444
No 177
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.24 E-value=2e-10 Score=78.94 Aligned_cols=109 Identities=23% Similarity=0.325 Sum_probs=83.5
Q ss_pred CeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc----CCCcccEEEECCCC
Q 031325 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE----WRGHVDTVVMNPPF 123 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~D~i~~~~p~ 123 (161)
..+||+|||.|.+.+.+|+. +...++|+|+....+..+...+...++ |+.++++|+.... ...++|.|+.+.|=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999986 667999999999999999999999898 9999999998732 22388988876552
Q ss_pred ------CCCCCCcchHHHHHHHhhcCCcEEEEeccCccccc
Q 031325 124 ------GTRKKGVDMDFLSMALKVASQAVYSLHKTSTREVS 158 (161)
Q Consensus 124 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (161)
|+..+-....+++.+.+.|++++.+...+...+|.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~ 139 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA 139 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 23355667799999999999777776666555543
No 178
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.22 E-value=3.3e-11 Score=88.84 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=76.1
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh-------c----CCceEEEEccccccc------C
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------L----ELDIDFVQCDIRNLE------W 110 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~-------~----~~~~~~~~~d~~~~~------~ 110 (161)
++.+|||+|||-|+.+..+...+...++|+|+++..++.|+++.+. . .....++.+|+.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6689999999999988888887888999999999999999998832 1 125678899886432 1
Q ss_pred C-CcccEEEECCCCCCC--CCCcchHHHHHHHhhcCCcEEEEec
Q 031325 111 R-GHVDTVVMNPPFGTR--KKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 111 ~-~~~D~i~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
. ..||+|-|...+|.. +......++..+...|+++++++-.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 289999998887775 4444446899999999866666653
No 179
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.22 E-value=2.3e-10 Score=79.99 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=91.4
Q ss_pred CCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC---CC-cccEEEECCC
Q 031325 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW---RG-HVDTVVMNPP 122 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---~~-~~D~i~~~~p 122 (161)
...+||||||.|.+.+.+|+. +...++|+|+....+..+.+.+.+.++ |+.+++.|+..+.. .+ +.|-|+.+.|
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 358999999999999999987 566999999999999999999999999 99999999987533 23 7888887655
Q ss_pred --C----CCCCCCcchHHHHHHHhhcCCcEEEEeccCccccc
Q 031325 123 --F----GTRKKGVDMDFLSMALKVASQAVYSLHKTSTREVS 158 (161)
Q Consensus 123 --~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (161)
| |+..+-.+..+++.+.+.|++++.+-..+..+++.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~ 170 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYF 170 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHH
Confidence 3 33466677899999999999887777777666554
No 180
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.21 E-value=3.7e-11 Score=83.14 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred eEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC-cccEEEECCCCCCCC
Q 031325 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRK 127 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~~ 127 (161)
.++|+|||+|.-++.++.+ ..+|+|+|+|+.|++.+++....... .......+..++.-.+ +.|+|++.-.+||+.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 8999999999777778886 56999999999999999886654333 2233333333433223 899999999999876
Q ss_pred CCcchHHHHHHHhhcC--CcEEEEeccCc
Q 031325 128 KGVDMDFLSMALKVAS--QAVYSLHKTST 154 (161)
Q Consensus 128 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 154 (161)
-+ ++++.+.++|| +++..+++..+
T Consensus 115 le---~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 115 LE---RFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred hH---HHHHHHHHHcCCCCCEEEEEEccC
Confidence 55 89999999998 45777777654
No 181
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.21 E-value=2.7e-10 Score=87.50 Aligned_cols=112 Identities=15% Similarity=0.271 Sum_probs=87.0
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC--CcccEEEE
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR--GHVDTVVM 119 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~--~~~D~i~~ 119 (161)
...++.+|||+|||+|+-+..++.. +...+++.|+++..++.+++++++.|+ ++.+...|...+... ..||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 4457889999999999999999885 345999999999999999999999998 788999998765422 27999999
Q ss_pred CCCCCCC---CC-----------------CcchHHHHHHHhhcCC---cEEEEeccCccc
Q 031325 120 NPPFGTR---KK-----------------GVDMDFLSMALKVASQ---AVYSLHKTSTRE 156 (161)
Q Consensus 120 ~~p~~~~---~~-----------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 156 (161)
|+|++-. .+ ..+.+.++.+++.+++ .+|+.|.-+..|
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eE 249 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREE 249 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHH
Confidence 9998632 11 1234668888888874 666677544333
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.20 E-value=1.5e-10 Score=75.89 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=102.4
Q ss_pred cccccccC-CcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHH
Q 031325 11 GDLEQFSN-PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELA 87 (161)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a 87 (161)
..+..|.. ++.-..-.+++...+++|...+.+. ++.-|+|+|.|+|.++..+.+++ ...++.+|.|++.+...
T Consensus 14 ~F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pe----sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L 89 (194)
T COG3963 14 SFFKGWIDNPRTVGAILPSSSILARKMASVIDPE----SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHL 89 (194)
T ss_pred HHHHHHhcCCceeeeecCCcHHHHHHHHhccCcc----cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHH
Confidence 33444444 4555666778888888888877665 78899999999999999998874 45999999999999988
Q ss_pred HHHHhhcCCceEEEEcccccccC--C---C-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEE
Q 031325 88 SENAADLELDIDFVQCDIRNLEW--R---G-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYS 148 (161)
Q Consensus 88 ~~~~~~~~~~~~~~~~d~~~~~~--~---~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
.+.... +.++.||+.++.. . + .||.|++..|+-..+.....+.++++...++.+.-+
T Consensus 90 ~~~~p~----~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~l 152 (194)
T COG3963 90 NQLYPG----VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPL 152 (194)
T ss_pred HHhCCC----ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeE
Confidence 776653 5689999988762 1 2 899999999988887788889999999998843333
No 183
>PRK10742 putative methyltransferase; Provisional
Probab=99.19 E-value=3.2e-10 Score=79.60 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHhhcCCCCCC--eEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc------C--C--ceEEEEccccc
Q 031325 40 AENSFGDVSNK--VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------E--L--DIDFVQCDIRN 107 (161)
Q Consensus 40 ~~~~~~~~~~~--~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~------~--~--~~~~~~~d~~~ 107 (161)
+.+..+..++. +|||..+|.|..++.++.+|+ .|+++|.|+....+.+.++++. + + +++++++|..+
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 33334444555 899999999999999999987 6999999999999999988874 2 2 58899999988
Q ss_pred ccCC--CcccEEEECCCCCCCC
Q 031325 108 LEWR--GHVDTVVMNPPFGTRK 127 (161)
Q Consensus 108 ~~~~--~~~D~i~~~~p~~~~~ 127 (161)
+... ..||+|++||||.+..
T Consensus 157 ~L~~~~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred HHhhCCCCCcEEEECCCCCCCc
Confidence 6442 2799999999998863
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.16 E-value=1.6e-10 Score=88.45 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=74.9
Q ss_pred CCeEEEecCCcchHHHHHHHcC-----CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEECC
Q 031325 49 NKVVADFGCGCGTLGAAATLLG-----ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVMNP 121 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~~~ 121 (161)
+..|+|+|||+|.+....++.+ ..+|+++|.|+.++...++.++..++ +++++++|+.++....++|+|++-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5789999999999987776643 46999999999999888777677666 8999999999988877999999854
Q ss_pred C--CCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 122 P--FGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 122 p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
- |+ ..+...+.+...-+.|++.+.++..
T Consensus 267 LGsfg--~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 267 LGSFG--DNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp -BTTB--TTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred cCCcc--ccccCHHHHHHHHhhcCCCCEEeCc
Confidence 3 33 3345567788888888866665553
No 185
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.14 E-value=3.7e-10 Score=77.36 Aligned_cols=110 Identities=25% Similarity=0.341 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhhcCCC--CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccccc-
Q 031325 31 HIASRMLYTAENSFGDV--SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN- 107 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~- 107 (161)
.+...+....+..+... .+.-|||+|||+|-.+..+...|. ..+|+|+|+.|++.|.+.-- ...+..+|.-+
T Consensus 31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~----egdlil~DMG~G 105 (270)
T KOG1541|consen 31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL----EGDLILCDMGEG 105 (270)
T ss_pred eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh----hcCeeeeecCCC
Confidence 34445555555543333 366899999999999988888775 99999999999999986322 23677777765
Q ss_pred ccCCC-cccEEEECCCCCCC---------CCCcchHHHHHHHhhcCCc
Q 031325 108 LEWRG-HVDTVVMNPPFGTR---------KKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 108 ~~~~~-~~D~i~~~~p~~~~---------~~~~~~~~~~~~~~~~~~~ 145 (161)
+++.. +||.+|.-....|. +......++..+...++++
T Consensus 106 lpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred CCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 45544 99998875443332 2222335566677777643
No 186
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.12 E-value=9.1e-10 Score=79.92 Aligned_cols=82 Identities=28% Similarity=0.426 Sum_probs=72.5
Q ss_pred HHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEE
Q 031325 40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTV 117 (161)
Q Consensus 40 ~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i 117 (161)
+......+.++.|+|+|||+|.++...++.|..+|+++|- .+|.+.|++.++.+.+ ++.++.|.++++...++.|++
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~Dvi 247 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVI 247 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEE
Confidence 4444566789999999999999999999999999999996 6799999999988877 899999999998887899999
Q ss_pred EECCC
Q 031325 118 VMNPP 122 (161)
Q Consensus 118 ~~~~p 122 (161)
|..|.
T Consensus 248 ISEPM 252 (517)
T KOG1500|consen 248 ISEPM 252 (517)
T ss_pred Eeccc
Confidence 99877
No 187
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=99.10 E-value=4e-10 Score=80.99 Aligned_cols=95 Identities=23% Similarity=0.351 Sum_probs=76.1
Q ss_pred cCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEc
Q 031325 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103 (161)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~ 103 (161)
..|..++.+...+++.+.. .++..|+|+|+|+|.++..+++.+ .+++++|+++.+++..++.....+ +++++.+
T Consensus 10 QnFL~~~~~~~~Iv~~~~~----~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~-~~~vi~~ 83 (262)
T PF00398_consen 10 QNFLVDPNIADKIVDALDL----SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNP-NVEVING 83 (262)
T ss_dssp SSEEEHHHHHHHHHHHHTC----GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCS-SEEEEES
T ss_pred cCeeCCHHHHHHHHHhcCC----CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcc-cceeeec
Confidence 3455566677766666543 378999999999999999999987 699999999999999988776322 8999999
Q ss_pred ccccccCCC----cccEEEECCCCC
Q 031325 104 DIRNLEWRG----HVDTVVMNPPFG 124 (161)
Q Consensus 104 d~~~~~~~~----~~D~i~~~~p~~ 124 (161)
|+.++.... ....|++|.||.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEETGT
T ss_pred chhccccHHhhcCCceEEEEEeccc
Confidence 999987654 567899999984
No 188
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.09 E-value=4.3e-10 Score=81.00 Aligned_cols=109 Identities=19% Similarity=0.175 Sum_probs=84.1
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcC-------CceEEEEcccccccC------CC-c
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE-------LDIDFVQCDIRNLEW------RG-H 113 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~------~~-~ 113 (161)
+++.++|+|||-|+.++.+-+.+...++|+||++..++.|+++.+... +.+.|+.+|+..... .+ .
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 677899999999999999988888999999999999999998776431 147899999975422 12 5
Q ss_pred ccEEEECCCCCCC--CCCcchHHHHHHHhhcCCcEEEEec-cCccc
Q 031325 114 VDTVVMNPPFGTR--KKGVDMDFLSMALKVASQAVYSLHK-TSTRE 156 (161)
Q Consensus 114 ~D~i~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (161)
||+|-|...+|.. +.......+.++.+.|+++++++-. ++...
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~ 242 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDV 242 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHH
Confidence 9999998887664 4445557788999999876666654 43333
No 189
>PLN02823 spermine synthase
Probab=99.05 E-value=4.7e-09 Score=77.64 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=78.7
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccccCC--CcccEEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWR--GHVDTVVM 119 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~--~~~D~i~~ 119 (161)
.+.+||.+|+|.|..+.++.+. +..+++.+|+++..++.+++.+...+ -+++++.+|....... .+||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4678999999999999998886 46699999999999999999876431 2789999999886432 28999999
Q ss_pred CCCCCC--C--CCCcchHHHH-HHHhhcCCcEEEEeccC
Q 031325 120 NPPFGT--R--KKGVDMDFLS-MALKVASQAVYSLHKTS 153 (161)
Q Consensus 120 ~~p~~~--~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (161)
+.+-.. . ..--..++++ .+.+.|++.+.++.+.+
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 854111 0 1112347887 88899986555555443
No 190
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=99.05 E-value=7.4e-10 Score=85.89 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=84.2
Q ss_pred cccC-CcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc---C--CCeEEEEeCChHHHHHHH
Q 031325 15 QFSN-PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---G--ADQVIAIDIDSDSLELAS 88 (161)
Q Consensus 15 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~---~--~~~v~~~D~~~~~~~~a~ 88 (161)
.|+. .....++|.||.++++.++..+.. .+..+|+|++||+|++....++. . ...++|.|+++....+++
T Consensus 156 ~fa~~~~k~~GEfyTP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~ 231 (489)
T COG0286 156 KFAEAEGKEAGEFYTPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAK 231 (489)
T ss_pred HHHHhcCCCCCccCChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHH
Confidence 3555 345568999999999999888775 25569999999999988887764 1 257999999999999999
Q ss_pred HHHhhcCCc--eEEEEcccccccCC----C--cccEEEECCCCC
Q 031325 89 ENAADLELD--IDFVQCDIRNLEWR----G--HVDTVVMNPPFG 124 (161)
Q Consensus 89 ~~~~~~~~~--~~~~~~d~~~~~~~----~--~~D~i~~~~p~~ 124 (161)
.+.--+|++ +....+|...-+.. . .||+|++||||.
T Consensus 232 mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 232 MNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred HHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCC
Confidence 999888874 56777776655433 2 799999999997
No 191
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=99.04 E-value=1.5e-08 Score=69.19 Aligned_cols=138 Identities=24% Similarity=0.267 Sum_probs=78.6
Q ss_pred cccccCCcccccCCCC---ChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc---CCCeEEEEeCChHHHHH
Q 031325 13 LEQFSNPKVELEQYPT---GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLEL 86 (161)
Q Consensus 13 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~---~~~~v~~~D~~~~~~~~ 86 (161)
.+.|.....-+....+ |-.++..+.+..+.......+.++.|+|||+|++.--+.-. ....+++-|+|+.++++
T Consensus 13 y~DfAsG~VL~sApG~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~l 92 (246)
T PF11599_consen 13 YEDFASGRVLYSAPGFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALEL 92 (246)
T ss_dssp -CCCSTTTSS--BTTB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHH
T ss_pred hhhhcCCeEEecCCCCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHH
Confidence 3445554444433333 23445555555555544555669999999999977666532 35699999999999999
Q ss_pred HHHHHh-----------------------------------------hc-CC-ceEEEEcccccccC-----CC-cccEE
Q 031325 87 ASENAA-----------------------------------------DL-EL-DIDFVQCDIRNLEW-----RG-HVDTV 117 (161)
Q Consensus 87 a~~~~~-----------------------------------------~~-~~-~~~~~~~d~~~~~~-----~~-~~D~i 117 (161)
|++|+. .. +. .....++|+++... .. ..|+|
T Consensus 93 A~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diV 172 (246)
T PF11599_consen 93 ARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIV 172 (246)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEE
T ss_pred HHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEE
Confidence 998532 11 12 45688889988433 12 67999
Q ss_pred EECCCCCCCCCCcc-------hHHHHHHHhhcC-CcEEEEe
Q 031325 118 VMNPPFGTRKKGVD-------MDFLSMALKVAS-QAVYSLH 150 (161)
Q Consensus 118 ~~~~p~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~ 150 (161)
+.|.||+....... ...++.+..+++ +.+..++
T Consensus 173 iTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 173 ITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp EEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEE
T ss_pred EecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEe
Confidence 99999988743333 367888888886 4444443
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.03 E-value=1.4e-09 Score=78.97 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=68.8
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC--
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-- 111 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-- 111 (161)
|++.++..+...++..++|.+||.|+.+..+++.. ...|+|+|.|+.+++.+++++.. .-++.++++|..++...
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHH
Confidence 45555665565678899999999999999999873 46999999999999999998866 33799999999875331
Q ss_pred -C--cccEEEECCC
Q 031325 112 -G--HVDTVVMNPP 122 (161)
Q Consensus 112 -~--~~D~i~~~~p 122 (161)
. .+|.|++|.-
T Consensus 86 ~~~~~vDgIl~DLG 99 (296)
T PRK00050 86 EGLGKVDGILLDLG 99 (296)
T ss_pred cCCCccCEEEECCC
Confidence 1 6999999744
No 193
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.01 E-value=1e-08 Score=69.27 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=66.6
Q ss_pred CCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcC--C--ceEEEEccccccc----CC-Cccc
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE--L--DIDFVQCDIRNLE----WR-GHVD 115 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~----~~-~~~D 115 (161)
...+.+|||+|||+|..++.++.. +..+|+..|.++ .++.++.|++.++ . ++.+..-|..+.. .. ..||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 457889999999999999999988 667999999998 9999999999876 2 6667666654421 11 2799
Q ss_pred EEEEC-CCCCCCCCCcchHHHHHHHhhcC--CcEEEEec
Q 031325 116 TVVMN-PPFGTRKKGVDMDFLSMALKVAS--QAVYSLHK 151 (161)
Q Consensus 116 ~i~~~-~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 151 (161)
+|++. -.|. .......++-+.++++ +.+++.+.
T Consensus 122 ~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99964 4454 3455577777777775 35555553
No 194
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.01 E-value=2.7e-09 Score=77.82 Aligned_cols=74 Identities=30% Similarity=0.442 Sum_probs=64.8
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC-CcccEEEEC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-GHVDTVVMN 120 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~~D~i~~~ 120 (161)
.+++++|||+|||+|.++...|+.|..+|+++|.+. +++.|++.+..+++ -++++++.+++...+ ++.|+|++-
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeeh
Confidence 468899999999999999999999999999999755 45999999999998 489999999987555 489999983
No 195
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.00 E-value=1.9e-09 Score=74.16 Aligned_cols=104 Identities=16% Similarity=0.084 Sum_probs=77.5
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC-cccEEEECCCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~ 125 (161)
...++||.|||.|+.+..+...-..+|-.+|..+..++.|++.+..... -.++++..+.++.+.. +||+|++.-...|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 3468999999999999987654477999999999999999988766332 3578889999887765 9999999999999
Q ss_pred CCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 126 RKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+...+...+|+.|...|++.+.++..
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 99999999999999999866666553
No 196
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=4.2e-09 Score=73.17 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=72.8
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC---------------------------
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--------------------------- 96 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--------------------------- 96 (161)
.-+.+..+||+||-+|.+++.+|+. +...+.|+||++..++.|++++....-
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3456789999999999999999986 777999999999999999998753210
Q ss_pred ---------ceEE-------EEcccccccCCCcccEEEECCC--CCCCCCCc--chHHHHHHHhhcCCcEEEEe
Q 031325 97 ---------DIDF-------VQCDIRNLEWRGHVDTVVMNPP--FGTRKKGV--DMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 97 ---------~~~~-------~~~d~~~~~~~~~~D~i~~~~p--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (161)
++.+ ...|..++. ...||+|+|-.. |-|+++++ ..+++.++++++.++++++.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~-~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMI-QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhc-cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 1111 111122111 117999998554 55554333 34889999999986666555
No 197
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=8.1e-09 Score=77.17 Aligned_cols=113 Identities=23% Similarity=0.306 Sum_probs=86.5
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHcC---CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC---C-ccc
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLLG---ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR---G-HVD 115 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---~-~~D 115 (161)
+.+.++.+|||+|++.|+-+..+++.. ...|+++|.++..++..++|+++.|+ ++..+..|....... . .||
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 355688999999999999999998863 23579999999999999999999999 778888887654322 2 599
Q ss_pred EEEECCCCCCCC--------------------CCcchHHHHHHHhhcCC---cEEEEeccCccc
Q 031325 116 TVVMNPPFGTRK--------------------KGVDMDFLSMALKVASQ---AVYSLHKTSTRE 156 (161)
Q Consensus 116 ~i~~~~p~~~~~--------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 156 (161)
.|+.|+|++-.. ...+.+.+..+++.+++ .+|+.|.-..+|
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eE 295 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEE 295 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhc
Confidence 999999985431 22344668888888863 777777544433
No 198
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.98 E-value=6.7e-10 Score=80.57 Aligned_cols=92 Identities=28% Similarity=0.386 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHH-------HHHHHhhcCC---ceE
Q 031325 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL-------ASENAADLEL---DID 99 (161)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~-------a~~~~~~~~~---~~~ 99 (161)
.+++-.+.+.... .+|+.|+|+..|||++.+..|..|. .|+|.||+-.++.. .+.|++..|. -+.
T Consensus 194 AeLSli~AN~Amv----~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fld 268 (421)
T KOG2671|consen 194 AELSLIMANQAMV----KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLD 268 (421)
T ss_pred hhHHHHHhhhhcc----CCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhh
Confidence 4455555444443 4899999999999999999999976 99999999888773 3567777775 467
Q ss_pred EEEcccccccCCC--cccEEEECCCCCCC
Q 031325 100 FVQCDIRNLEWRG--HVDTVVMNPPFGTR 126 (161)
Q Consensus 100 ~~~~d~~~~~~~~--~~D~i~~~~p~~~~ 126 (161)
++.+|....++.. .||.|+|||||+..
T Consensus 269 vl~~D~sn~~~rsn~~fDaIvcDPPYGVR 297 (421)
T KOG2671|consen 269 VLTADFSNPPLRSNLKFDAIVCDPPYGVR 297 (421)
T ss_pred eeeecccCcchhhcceeeEEEeCCCcchh
Confidence 8899998877654 99999999999875
No 199
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.97 E-value=7.6e-09 Score=72.60 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=36.3
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHH
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~ 86 (161)
.++.++||+|||+|.++..+++.|..+|+++|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 5778999999999999999999887899999999987765
No 200
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=3e-09 Score=73.80 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=87.5
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC-C--CeEEEEeCChHHHHHHHHHHhhcCCceEEE
Q 031325 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-A--DQVIAIDIDSDSLELASENAADLELDIDFV 101 (161)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~-~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~ 101 (161)
.+...+++..+-...+...... +..+||++|||.|.....+.+-. . -.++++|.+|.+++..+++......++...
T Consensus 49 rFfkdR~wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af 127 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAF 127 (264)
T ss_pred cccchhHHHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccc
Confidence 3344444444444444433222 22389999999999999988752 2 489999999999999998877655455555
Q ss_pred EcccccccC----C-CcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 102 QCDIRNLEW----R-GHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 102 ~~d~~~~~~----~-~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
+.|+..... . ..+|+|++-..+.....+.-...++++.+++++++.+++.
T Consensus 128 v~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 128 VWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred ceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 555554332 1 2899988866666666677779999999999987777774
No 201
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.95 E-value=5.5e-09 Score=75.56 Aligned_cols=80 Identities=26% Similarity=0.309 Sum_probs=46.6
Q ss_pred CCeEEEecCCcchHHHHH-HHcCCCeEEEEeCChHHHHHHHHHHhhc-CC--ceEEEEccccc-c---cCC--CcccEEE
Q 031325 49 NKVVADFGCGCGTLGAAA-TLLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCDIRN-L---EWR--GHVDTVV 118 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~l-a~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~~d~~~-~---~~~--~~~D~i~ 118 (161)
..++||+|+|...+--.| ++...++++|+|+++..++.|+++++.+ ++ +++++...-.. + ... +.||..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 458999999988654333 3334679999999999999999999998 66 67776553222 1 111 2799999
Q ss_pred ECCCCCCCCC
Q 031325 119 MNPPFGTRKK 128 (161)
Q Consensus 119 ~~~p~~~~~~ 128 (161)
|||||+....
T Consensus 183 CNPPFy~s~~ 192 (299)
T PF05971_consen 183 CNPPFYSSQE 192 (299)
T ss_dssp E-----SS--
T ss_pred cCCccccChh
Confidence 9999986543
No 202
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.93 E-value=2.2e-09 Score=71.86 Aligned_cols=93 Identities=25% Similarity=0.321 Sum_probs=77.4
Q ss_pred CCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCCcccEEEECCCCCCCC
Q 031325 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRK 127 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~ 127 (161)
.+.+.|+|+|+|.++...++. ..+|+++|.+|.....|.+|++-.|. +++++.+|+.+..++ ..|+|+|-.-=..+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe-~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE-NADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc-ccceeHHHHhhHHhh
Confidence 378999999999999999886 67999999999999999999988888 999999999998874 689999843322234
Q ss_pred CCcchHHHHHHHhhcC
Q 031325 128 KGVDMDFLSMALKVAS 143 (161)
Q Consensus 128 ~~~~~~~~~~~~~~~~ 143 (161)
.+.+..+++.+...++
T Consensus 111 ~E~qVpV~n~vleFLr 126 (252)
T COG4076 111 EEKQVPVINAVLEFLR 126 (252)
T ss_pred cccccHHHHHHHHHhh
Confidence 4556678888888776
No 203
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.91 E-value=2.4e-08 Score=77.94 Aligned_cols=111 Identities=10% Similarity=0.126 Sum_probs=87.1
Q ss_pred CCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc---CCCcccEEEECC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE---WRGHVDTVVMNP 121 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---~~~~~D~i~~~~ 121 (161)
..+..+||+|||.|.++..+|+. +...++|+|+....+..+.......++ |+.++..|+..+. ...++|.|+.+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 35678999999999999999986 566999999999999988888888888 8888888875332 223789988876
Q ss_pred C--C----CCCCCCcchHHHHHHHhhcCCcEEEEeccCcccc
Q 031325 122 P--F----GTRKKGVDMDFLSMALKVASQAVYSLHKTSTREV 157 (161)
Q Consensus 122 p--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
| | |+..+-....+++.+.+.+++++.+-..+...+|
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 6 4 4446677779999999999976666666555544
No 204
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.91 E-value=5.1e-08 Score=70.41 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcC----C-ceEEEEcccccccCCC--cccEEEEC
Q 031325 49 NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE----L-DIDFVQCDIRNLEWRG--HVDTVVMN 120 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~--~~D~i~~~ 120 (161)
.++||-+|.|.|+.+.++.++. ..+++.+|+++..++.+++.+.... - +++++.+|..++.... +||+|+.|
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999974 6799999999999999999887654 2 7899999998865533 79999986
Q ss_pred CCC--CCCCCCcchHHHHHHHhhcC-CcEEEEe
Q 031325 121 PPF--GTRKKGVDMDFLSMALKVAS-QAVYSLH 150 (161)
Q Consensus 121 ~p~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (161)
..- +....=-..++++.+.+.|+ .++++..
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 442 22222234599999999998 4555555
No 205
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.90 E-value=4.6e-08 Score=67.22 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=76.8
Q ss_pred CCChhHHHHHHHHHHh-hc---CCCCCCeEEEecCCcch----HHHHHHHc-----C-CCeEEEEeCChHHHHHHHHH--
Q 031325 27 PTGPHIASRMLYTAEN-SF---GDVSNKVVADFGCGCGT----LGAAATLL-----G-ADQVIAIDIDSDSLELASEN-- 90 (161)
Q Consensus 27 ~~~~~~~~~~~~~~~~-~~---~~~~~~~vlD~g~G~G~----~~~~la~~-----~-~~~v~~~D~~~~~~~~a~~~-- 90 (161)
...++.-+.+.+.+.+ .. ...+.-+|+..||++|. +++.+.+. + .-+++|+|+|+.+++.|++-
T Consensus 6 FRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y 85 (196)
T PF01739_consen 6 FRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIY 85 (196)
T ss_dssp TTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEE
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCC
Confidence 3344555555555553 21 22245699999999994 44444441 1 23999999999999999961
Q ss_pred ----------------H-hhcC--------C--ceEEEEccccc-ccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhc
Q 031325 91 ----------------A-ADLE--------L--DIDFVQCDIRN-LEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 142 (161)
Q Consensus 91 ----------------~-~~~~--------~--~~~~~~~d~~~-~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~ 142 (161)
+ ...+ + .+.|...|+.+ .+....||+|+|--.+-.++.....+.++.+.+.|
T Consensus 86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L 165 (196)
T PF01739_consen 86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSL 165 (196)
T ss_dssp EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGE
T ss_pred CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHc
Confidence 1 0111 1 58899999998 33334999999988888888888889999999999
Q ss_pred CCcEEEEec
Q 031325 143 SQAVYSLHK 151 (161)
Q Consensus 143 ~~~~~~~~~ 151 (161)
++++|++..
T Consensus 166 ~pgG~L~lG 174 (196)
T PF01739_consen 166 KPGGYLFLG 174 (196)
T ss_dssp EEEEEEEE-
T ss_pred CCCCEEEEe
Confidence 977777763
No 206
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.90 E-value=3.9e-08 Score=69.84 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=76.0
Q ss_pred HhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEE
Q 031325 41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVM 119 (161)
Q Consensus 41 ~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~ 119 (161)
..........+|+|+|+|+|.++..+++. +..+++..|+ |..++.+++ .-+++++.+|+.+..+. +|++++
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~P~--~D~~~l 164 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPLPV--ADVYLL 164 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCCSS--ESEEEE
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhhcc--ccceee
Confidence 33434445578999999999999999876 5569999999 999998888 22799999999943333 999999
Q ss_pred CCCCCCCCCCcchHHHHHHHhhcCCc
Q 031325 120 NPPFGTRKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 120 ~~p~~~~~~~~~~~~~~~~~~~~~~~ 145 (161)
.-.+|..+.......|+++.+.++++
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 99999888888889999999999844
No 207
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.89 E-value=1.7e-08 Score=73.31 Aligned_cols=120 Identities=22% Similarity=0.276 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccc
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 107 (161)
+.+..+....+ .+.++.+|||+|+++|+-+..+++. +...+++.|+++..+...+.++++.|. ++.....|...
T Consensus 71 d~sS~l~~~~L---~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~ 147 (283)
T PF01189_consen 71 DESSQLVALAL---DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARK 147 (283)
T ss_dssp HHHHHHHHHHH---TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHH
T ss_pred ccccccccccc---cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccc
Confidence 44444433333 4567889999999999999999886 356999999999999999999999999 78888888887
Q ss_pred ccC--CC-cccEEEECCCCCCC---CC-----------------CcchHHHHHHHhhc----CC---cEEEEeccC
Q 031325 108 LEW--RG-HVDTVVMNPPFGTR---KK-----------------GVDMDFLSMALKVA----SQ---AVYSLHKTS 153 (161)
Q Consensus 108 ~~~--~~-~~D~i~~~~p~~~~---~~-----------------~~~~~~~~~~~~~~----~~---~~~~~~~~~ 153 (161)
... .. .||.|+.|+|..-. .. ..+.+.++.+.+.+ ++ .+|+.|.-.
T Consensus 148 ~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 148 LDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 632 22 59999999998653 11 12234478888888 63 677777433
No 208
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.86 E-value=4.9e-08 Score=70.59 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=85.8
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEE
Q 031325 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQ 102 (161)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~ 102 (161)
+........++..+....+.+.+.+|||+|||+|.-...+... ...+++++|.|+.+++.++.......- ......
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~ 91 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRR 91 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhh
Confidence 3444566677777777777778899999999999876666553 456999999999999999887665321 111111
Q ss_pred cccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 103 CDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 103 ~d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
....+.......|+|++...+..........+++.+++.+.+.+.++..
T Consensus 92 ~~~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEp 140 (274)
T PF09243_consen 92 VLYRDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAPVLVLVEP 140 (274)
T ss_pred hhhcccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccCcEEEEcC
Confidence 1111111112459999988888876666678899998888775555443
No 209
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.83 E-value=1.2e-07 Score=64.59 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=90.4
Q ss_pred hhhhhhcccccccCCcccccCCCCChhHHH-HHHHHHHhhcCCCCCC-eEEEecCCcchHHHHHHHc-CCCeEEEEeCCh
Q 031325 5 QLESVLGDLEQFSNPKVELEQYPTGPHIAS-RMLYTAENSFGDVSNK-VVADFGCGCGTLGAAATLL-GADQVIAIDIDS 81 (161)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~ 81 (161)
+++.+..-+..|+. ........+..++.. .+++.+.......... +++|+|+|.|-=++.++-. +..+++.+|.+.
T Consensus 4 ~l~~y~~lL~~~N~-~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~ 82 (184)
T PF02527_consen 4 KLEQYLELLLEWNK-KINLTSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVG 82 (184)
T ss_dssp HHHHHHHHHHHHHH-CSSS-S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSH
T ss_pred HHHHHHHHHHHhCc-eeeeccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCc
Confidence 34445544444444 444444445445544 5555555543323333 8999999999888887764 566999999999
Q ss_pred HHHHHHHHHHhhcCC-ceEEEEcccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 82 DSLELASENAADLEL-DIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 82 ~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
..+...+.-....++ |++++++.+++......||+|++-.. ......++-+...+++++.++..
T Consensus 83 KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv------~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 83 KKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV------APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh------cCHHHHHHHHHHhcCCCCEEEEE
Confidence 999999999999999 79999999999333338999999443 11226666667767755555553
No 210
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.83 E-value=7e-08 Score=66.74 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHh-------hcCC---ceE
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAA-------DLEL---DID 99 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~-~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~---~~~ 99 (161)
++....+..++......++++.+|+|||.|.....+|. .+...++|+|+.+...+.|+...+ ..+. ++.
T Consensus 25 Ei~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 25 EISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp GCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred ecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 34444455555566667889999999999998777664 467679999999999888875433 2333 678
Q ss_pred EEEcccccccCCC----cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 100 FVQCDIRNLEWRG----HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 100 ~~~~d~~~~~~~~----~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+..+|+.+.+... ..|+|++|.... . +.....+......+|++..++.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 8899987754321 579999976522 2 2233445555566676666554
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.81 E-value=4.2e-08 Score=69.84 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcC-----CceEEEEcccccccCC--C-cccEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWR--G-HVDTVV 118 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~--~-~~D~i~ 118 (161)
.+.+||-+|.|.|..+.++.+.. ..+++.+|+++..++.+++.+.... -+++++.+|...+... . +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 67899999999999999999874 5699999999999999999876421 2789999999875443 3 699999
Q ss_pred ECCCC--CCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 119 MNPPF--GTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 119 ~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
.+.+- .....--..++++.+.+.|++.+.++.+
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 87663 2212223469999999999854444443
No 212
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=1.8e-08 Score=67.98 Aligned_cols=92 Identities=25% Similarity=0.274 Sum_probs=74.2
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEE-CCCCC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVM-NPPFG 124 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~-~~p~~ 124 (161)
...+++|||+|+|+|--++..++.|...++..|++|......+.|.+.++.++.+...|+.. . ...||++++ +-.|.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~-~~~~Dl~LagDlfy~ 154 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S-PPAFDLLLAGDLFYN 154 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C-CcceeEEEeeceecC
Confidence 34688999999999999999999898899999999999999999999999999999999987 2 237999986 45565
Q ss_pred CCCCCcchHHHHHHH
Q 031325 125 TRKKGVDMDFLSMAL 139 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~ 139 (161)
+......+.|+..+.
T Consensus 155 ~~~a~~l~~~~~~l~ 169 (218)
T COG3897 155 HTEADRLIPWKDRLA 169 (218)
T ss_pred chHHHHHHHHHHHHH
Confidence 544444445444444
No 213
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.80 E-value=2.6e-07 Score=66.16 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=84.7
Q ss_pred CCCCeEEEecCCcchHHHHHHH-cC--CCeEEEEeCChHHHHHHHHHHhhcCC-ce-EEEEcccccccCC----CcccEE
Q 031325 47 VSNKVVADFGCGCGTLGAAATL-LG--ADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRNLEWR----GHVDTV 117 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~-~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~-~~~~~d~~~~~~~----~~~D~i 117 (161)
..+.+|+|++||.|+....... .+ ..++...|.++..++.+++.++..|+ ++ +|.++|+.+...- ..++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 3567999999999987776654 33 36999999999999999999999999 55 9999999885432 168999
Q ss_pred EECCCCCCCCCCcch-HHHHHHHhhcCCcEEEEec
Q 031325 118 VMNPPFGTRKKGVDM-DFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 118 ~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 151 (161)
+.+.-|..+...... ..+..+.+.+.+++|++..
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 999999888665533 4688888888888888774
No 214
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=1.6e-07 Score=64.98 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=89.5
Q ss_pred cCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceE
Q 031325 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DID 99 (161)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~ 99 (161)
..+..+++....+...+... .+++++|+|.-+|+.++.+|.. ..+.|+++|+++...+.+.+..+.+|. .++
T Consensus 53 ~~m~v~~d~g~fl~~li~~~----~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~ 128 (237)
T KOG1663|consen 53 SEMLVGPDKGQFLQMLIRLL----NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKIT 128 (237)
T ss_pred cceecChHHHHHHHHHHHHh----CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceee
Confidence 34445555555444444433 6789999999999988888875 345999999999999999999999998 799
Q ss_pred EEEcccccccC-------CCcccEEEECCCCCCCCCCcchHHHHHHHhhcC-CcEEEEec
Q 031325 100 FVQCDIRNLEW-------RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK 151 (161)
Q Consensus 100 ~~~~d~~~~~~-------~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 151 (161)
++++++.+... .++||.++.|.- ...+...++++.++++ +++.++.|
T Consensus 129 ~i~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 129 FIEGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eeecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEEec
Confidence 99999876422 128999999765 4555688999999998 44544444
No 215
>PRK00536 speE spermidine synthase; Provisional
Probab=98.79 E-value=1.4e-07 Score=67.38 Aligned_cols=99 Identities=8% Similarity=-0.074 Sum_probs=74.0
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcC--C---ceEEEEcccccccCCCcccEEEEC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE--L---DIDFVQCDIRNLEWRGHVDTVVMN 120 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~D~i~~~ 120 (161)
...+++||=+|.|.|+.+.++.++.. +|+-+|||+..++.+++.+.... + +++++.. ..+. ..++||+||.|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEc
Confidence 34678999999999999999999864 99999999999999999655421 2 5666542 2111 11379999998
Q ss_pred CCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 121 PPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 121 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
..|. ..+++.+.+.|++.+.++.+.++
T Consensus 147 s~~~-------~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 147 QEPD-------IHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred CCCC-------hHHHHHHHHhcCCCcEEEECCCC
Confidence 6532 48889999999966666665544
No 216
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=9e-08 Score=65.29 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-C--CCeEEEEeCChHHHHHHHHHHhhcC--------C---
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELASENAADLE--------L--- 96 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~--~~~v~~~D~~~~~~~~a~~~~~~~~--------~--- 96 (161)
..-...++.+... ..++.++||+|.|+|+++..++.. + ....+|||..++.++.+++++...- +
T Consensus 67 ~mha~~le~L~~~--L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 67 HMHATALEYLDDH--LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHHHHHh--hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 3333444444422 348899999999999999999865 2 2355999999999999999887532 1
Q ss_pred ceEEEEcccccccCCC-cccEEEEC
Q 031325 97 DIDFVQCDIRNLEWRG-HVDTVVMN 120 (161)
Q Consensus 97 ~~~~~~~d~~~~~~~~-~~D~i~~~ 120 (161)
++.++.+|......+. .||.|.+-
T Consensus 145 ~l~ivvGDgr~g~~e~a~YDaIhvG 169 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAEQAPYDAIHVG 169 (237)
T ss_pred ceEEEeCCccccCCccCCcceEEEc
Confidence 6789999999876655 99999985
No 217
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.2e-07 Score=64.97 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=72.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC--
Q 031325 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-- 111 (161)
Q Consensus 38 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-- 111 (161)
..+...+...+|.+|++-|.|+|+++-++++. +-++++..|.++...+.|++.+++.++ ++++.+-|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 34455556679999999999999999999885 456999999999999999999999998 899999999875443
Q ss_pred -CcccEEEECCCC
Q 031325 112 -GHVDTVVMNPPF 123 (161)
Q Consensus 112 -~~~D~i~~~~p~ 123 (161)
..+|.|+.|.|-
T Consensus 175 s~~aDaVFLDlPa 187 (314)
T KOG2915|consen 175 SLKADAVFLDLPA 187 (314)
T ss_pred ccccceEEEcCCC
Confidence 289999999883
No 218
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.76 E-value=4.8e-08 Score=67.53 Aligned_cols=100 Identities=29% Similarity=0.290 Sum_probs=67.4
Q ss_pred EEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC-cccEEEECCCCCCCC
Q 031325 52 VADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRK 127 (161)
Q Consensus 52 vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~~ 127 (161)
|+|+||.-|++.++|.+.+ ...++++|+++..++.|++++...++ +++++.+|..+..... ..|.|+.... .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 6899999999999999986 45899999999999999999999997 7999999987744333 4788876444 3
Q ss_pred CCcchHHHHHHHhhcCC-cEEEEeccCcc
Q 031325 128 KGVDMDFLSMALKVASQ-AVYSLHKTSTR 155 (161)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 155 (161)
...-.+.++.....+++ .-++++..+..
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~~~~ 105 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPNTHA 105 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEESS-H
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCCCCh
Confidence 33344556655555543 34555544443
No 219
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=1.8e-07 Score=64.89 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=83.6
Q ss_pred hhhhhhcccccccCCcccccCCCCChhHHHHHHHHHHhhcCCCC--CCeEEEecCCcchHHHHHHH-cCCCeEEEEeCCh
Q 031325 5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVS--NKVVADFGCGCGTLGAAATL-LGADQVIAIDIDS 81 (161)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~la~-~~~~~v~~~D~~~ 81 (161)
++..+..-+..|+. ........+..++..+.+.......+..+ +.+++|+|+|.|-=++.+|- ++..+++-+|...
T Consensus 23 ~l~~Y~~lL~~wN~-~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~ 101 (215)
T COG0357 23 KLEAYVELLLKWNK-AYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG 101 (215)
T ss_pred HHHHHHHHHHHhhH-hcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc
Confidence 34444444444544 45555555555555544444444434444 58999999999998888873 3455799999999
Q ss_pred HHHHHHHHHHhhcCC-ceEEEEcccccccCCCc-ccEEEEC
Q 031325 82 DSLELASENAADLEL-DIDFVQCDIRNLEWRGH-VDTVVMN 120 (161)
Q Consensus 82 ~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~D~i~~~ 120 (161)
..+...++..+..++ |+.++++-++++..... ||+|.+-
T Consensus 102 Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 102 KKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred hHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee
Confidence 999999999999999 79999999999876555 9999983
No 220
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.71 E-value=4.7e-09 Score=72.43 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=65.9
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC--C-CcccEEEECCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW--R-GHVDTVVMNPPFG 124 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--~-~~~D~i~~~~p~~ 124 (161)
+-.+++|+|||||-.+..+-.+ ...++|+|+|++|++.|.++ ++-=...++|...+.. . +.||+|.+.-.+.
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred ccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 3579999999999999999877 55999999999999988654 2211345555544332 2 2899999865544
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.. +....++-.....+.+++.+.+
T Consensus 200 Yl--G~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 200 YL--GALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred hh--cchhhHHHHHHHhcCCCceEEE
Confidence 33 3333667777777775444444
No 221
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.71 E-value=7.3e-07 Score=62.42 Aligned_cols=127 Identities=25% Similarity=0.250 Sum_probs=70.6
Q ss_pred cccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcch-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCce
Q 031325 20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDI 98 (161)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~-~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~ 98 (161)
...+++-...++.+-..+..+... ....|++||-+|=+.-. +++.+.. ...+|+.+|+++..++..++..++.|+++
T Consensus 17 ~~~~DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDDLtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~gl~i 94 (243)
T PF01861_consen 17 DVELDQGYATPETTLRRAALMAER-GDLEGKRILFLGDDDLTSLALALTG-LPKRITVVDIDERLLDFINRVAEEEGLPI 94 (243)
T ss_dssp -GGGT---B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT--E
T ss_pred ccccccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCCcHHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcCCce
Confidence 345555555555554444444443 45578999999866553 3344433 35699999999999999999999999999
Q ss_pred EEEEcccccccCCC---cccEEEECCCCCCCCCCcchHHHHHHHhhcCC---cEEEEec
Q 031325 99 DFVQCDIRNLEWRG---HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ---AVYSLHK 151 (161)
Q Consensus 99 ~~~~~d~~~~~~~~---~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 151 (161)
+.++.|+.+..+.. +||++++||||.. ..-.-++......|++ .+|+...
T Consensus 95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~---~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 95 EAVHYDLRDPLPEELRGKFDVFFTDPPYTP---EGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp EEE---TTS---TTTSS-BSEEEE---SSH---HHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred EEEEecccccCCHHHhcCCCEEEeCCCCCH---HHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 99999998865543 9999999999875 2223677777777762 4555553
No 222
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.66 E-value=2.5e-07 Score=65.33 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=62.4
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCCCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTR 126 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~ 126 (161)
...++||+|+|.|..+..++.. ..+|+++|.|+.|.... ++.|. +++ ++.+....+ +||+|.|-.....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL----~~kg~--~vl--~~~~w~~~~~~fDvIscLNvLDR- 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRL----SKKGF--TVL--DIDDWQQTDFKFDVISCLNVLDR- 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHH----HhCCC--eEE--ehhhhhccCCceEEEeehhhhhc-
Confidence 5678999999999999999986 56999999999986644 44443 222 333333333 8999999666553
Q ss_pred CCCcchHHHHHHHhhcCC
Q 031325 127 KKGVDMDFLSMALKVASQ 144 (161)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~ 144 (161)
.......++.+.+.+++
T Consensus 164 -c~~P~~LL~~i~~~l~p 180 (265)
T PF05219_consen 164 -CDRPLTLLRDIRRALKP 180 (265)
T ss_pred -cCCHHHHHHHHHHHhCC
Confidence 34444889999999875
No 223
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.65 E-value=4.9e-07 Score=59.07 Aligned_cols=91 Identities=25% Similarity=0.292 Sum_probs=64.3
Q ss_pred CCCCCeEEEecCCcchHHHHHHH-----cCCCeEEEEeCChHHHHHHHHHHhhcC--C--ceEEEEcccccccCCCcccE
Q 031325 46 DVSNKVVADFGCGCGTLGAAATL-----LGADQVIAIDIDSDSLELASENAADLE--L--DIDFVQCDIRNLEWRGHVDT 116 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~-----~~~~~v~~~D~~~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~~~~~D~ 116 (161)
..+..+|+|+|||.|+++..++. ....+|+++|.++..++.+..+.+..+ + +..+..++..+.......++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 35677999999999999999998 545699999999999999998888766 3 45666666655433335666
Q ss_pred EEECCCCCCCCCCcchHHHHHHHh
Q 031325 117 VVMNPPFGTRKKGVDMDFLSMALK 140 (161)
Q Consensus 117 i~~~~p~~~~~~~~~~~~~~~~~~ 140 (161)
++.--..+ ......++...+
T Consensus 103 ~vgLHaCG----~Ls~~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACG----DLSDRALRLFIR 122 (141)
T ss_pred EEEeeccc----chHHHHHHHHHH
Confidence 66533333 333355555554
No 224
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.64 E-value=1.6e-07 Score=62.66 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=58.7
Q ss_pred EEEeCChHHHHHHHHHHhhcC---C-ceEEEEcccccccCCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 75 IAIDIDSDSLELASENAADLE---L-DIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 75 ~~~D~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
+|+|+|++|++.|+++....+ . +++++++|+.+++... +||+|++...+++. ....+.++++.+++++++.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEEE
Confidence 489999999999987765322 2 6899999999988765 89999997666554 455699999999999776665
Q ss_pred e
Q 031325 150 H 150 (161)
Q Consensus 150 ~ 150 (161)
.
T Consensus 79 i 79 (160)
T PLN02232 79 I 79 (160)
T ss_pred E
Confidence 4
No 225
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.63 E-value=1e-06 Score=63.20 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=86.6
Q ss_pred CCCCChhHHHHHHHHHHhhcCC-C--CCCeEEEecCCcc----hHHHHHHHcC------CCeEEEEeCChHHHHHHHHHH
Q 031325 25 QYPTGPHIASRMLYTAENSFGD-V--SNKVVADFGCGCG----TLGAAATLLG------ADQVIAIDIDSDSLELASENA 91 (161)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~vlD~g~G~G----~~~~~la~~~------~~~v~~~D~~~~~~~~a~~~~ 91 (161)
.+...++.-..+.+.+.+.... . ..-+|+-.||++| ++++.+.+.. ..+|+|+|+|..+++.|++-.
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 3444455555555555542211 1 3569999999999 3455554432 349999999999999998511
Q ss_pred ---------------h----hc--C-------C--ceEEEEccccccc-CCCcccEEEECCCCCCCCCCcchHHHHHHHh
Q 031325 92 ---------------A----DL--E-------L--DIDFVQCDIRNLE-WRGHVDTVVMNPPFGTRKKGVDMDFLSMALK 140 (161)
Q Consensus 92 ---------------~----~~--~-------~--~~~~~~~d~~~~~-~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~ 140 (161)
+ +. + + .+.|...|+.+.. ....||+|+|--..-.++...+.+.++..+.
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~ 229 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFAD 229 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHH
Confidence 0 00 1 1 4678888887766 3348999999888777788888899999999
Q ss_pred hcCCcEEEEe
Q 031325 141 VASQAVYSLH 150 (161)
Q Consensus 141 ~~~~~~~~~~ 150 (161)
.|++++++..
T Consensus 230 ~L~~gG~Lfl 239 (268)
T COG1352 230 SLKPGGLLFL 239 (268)
T ss_pred HhCCCCEEEE
Confidence 9986555554
No 226
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.62 E-value=8.9e-07 Score=64.26 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=76.6
Q ss_pred CCeEEEecCCcch----HHHHHHHc-C----CCeEEEEeCChHHHHHHHHHH------------------hh-----cC-
Q 031325 49 NKVVADFGCGCGT----LGAAATLL-G----ADQVIAIDIDSDSLELASENA------------------AD-----LE- 95 (161)
Q Consensus 49 ~~~vlD~g~G~G~----~~~~la~~-~----~~~v~~~D~~~~~~~~a~~~~------------------~~-----~~- 95 (161)
.-+|+..||++|- +++.+.+. + ..+|+|+|+|+.+++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 44444442 1 248999999999999998631 10 01
Q ss_pred ------C--ceEEEEcccccccC--CCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 96 ------L--DIDFVQCDIRNLEW--RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 96 ------~--~~~~~~~d~~~~~~--~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+ .+.|...|+.+.+. ...||+|+|-..+.+++.....++++.+.+.++++++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 2 47899999987543 2489999998888888888888999999999987666655
No 227
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.58 E-value=2.4e-07 Score=64.20 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 110 (161)
++...+.+.++.... ....++|+|||.|.+...+...+..+++-+|.|-.|++.++.. +..++......+|-+.+++
T Consensus 57 eig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf 133 (325)
T KOG2940|consen 57 EIGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDF 133 (325)
T ss_pred HHHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEEEEEecchhcccc
Confidence 445555555555422 3457999999999999999888888999999999999987654 3355577888999988887
Q ss_pred CC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcE
Q 031325 111 RG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAV 146 (161)
Q Consensus 111 ~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 146 (161)
.+ ++|+|+.+...||.+ ..+.++.+++..+|+-+
T Consensus 134 ~ens~DLiisSlslHW~N--dLPg~m~~ck~~lKPDg 168 (325)
T KOG2940|consen 134 KENSVDLIISSLSLHWTN--DLPGSMIQCKLALKPDG 168 (325)
T ss_pred cccchhhhhhhhhhhhhc--cCchHHHHHHHhcCCCc
Confidence 76 999999999988864 34488889999998533
No 228
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.52 E-value=6.1e-07 Score=58.54 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=48.6
Q ss_pred eEEEecCCcchHHHHHHHcCC-CeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccc
Q 031325 51 VVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 107 (161)
+++|+|||.|..+..+++.+. .+++++|.++.+++.++++++.+++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999988743 3899999999999999999988776 67777776654
No 229
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.50 E-value=9.3e-07 Score=64.49 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=68.6
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC---
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR--- 111 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--- 111 (161)
|++.+...+...++..++|..+|.|+.+..+++. +...++|+|.++.+++.+++.++..+-++.+++++..++...
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 4555555555667889999999999999999875 447999999999999999998876544789999998775431
Q ss_pred ---CcccEEEECC
Q 031325 112 ---GHVDTVVMNP 121 (161)
Q Consensus 112 ---~~~D~i~~~~ 121 (161)
..+|.|++|.
T Consensus 88 ~~~~~vDgIl~DL 100 (305)
T TIGR00006 88 LLVTKIDGILVDL 100 (305)
T ss_pred cCCCcccEEEEec
Confidence 1689999873
No 230
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.50 E-value=4.5e-06 Score=57.58 Aligned_cols=100 Identities=18% Similarity=0.089 Sum_probs=77.6
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC-cccEEEECCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPPF 123 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~D~i~~~~p~ 123 (161)
.+.+++|+||..|++..++.+. .+..+++.|+++..++.|.+++...++ ++++..+|.......+ .+|+|+....
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 4556999999999999999986 467999999999999999999999988 7899999996644433 7999887554
Q ss_pred CCCCCCcchHHHHHHHhhcCCcE-EEEec
Q 031325 124 GTRKKGVDMDFLSMALKVASQAV-YSLHK 151 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (161)
....-.+.++.-.+.+++.- ++++.
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlILQP 120 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLILQP 120 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEECC
Confidence 34444577777777777433 44443
No 231
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.49 E-value=2.7e-06 Score=62.63 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=53.8
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-CCcccEEEECCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-RGHVDTVVMNPP 122 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~i~~~~p 122 (161)
.++.+++|+||++|+++..+.++|. .|+++|..+ + ...+...+ ++....+|.....+ ...+|+++||..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l----~~~L~~~~-~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-M----AQSLMDTG-QVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-c----CHhhhCCC-CEEEEeccCcccCCCCCCCCEEEEecc
Confidence 5788999999999999999999987 999999554 2 12232222 68888888877655 348999999866
No 232
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=98.48 E-value=7.5e-07 Score=62.43 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=48.0
Q ss_pred CeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc----CC------ceEEEEcccccccCC--CcccEE
Q 031325 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL----EL------DIDFVQCDIRNLEWR--GHVDTV 117 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~----~~------~~~~~~~d~~~~~~~--~~~D~i 117 (161)
.+|||..+|-|.-++-++..|. +|+++|-||-+..+.+.-++++ .. +++++++|..++... ..||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 3899999999999999998876 8999999998877776543321 11 689999999886442 289999
Q ss_pred EECCCCCCC
Q 031325 118 VMNPPFGTR 126 (161)
Q Consensus 118 ~~~~p~~~~ 126 (161)
++||.|.+.
T Consensus 156 Y~DPMFp~~ 164 (234)
T PF04445_consen 156 YFDPMFPER 164 (234)
T ss_dssp EE--S----
T ss_pred EECCCCCCc
Confidence 999999875
No 233
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.48 E-value=2.1e-06 Score=58.98 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=77.9
Q ss_pred CCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ce-EEEEcccccccC--C-------CcccE
Q 031325 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRNLEW--R-------GHVDT 116 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~-~~~~~d~~~~~~--~-------~~~D~ 116 (161)
+.+|||+|||||..+.++++. +.-+..-.|.++......+..+...++ |+ ..+..|+...+. . ..||+
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 336999999999999999886 555888899999998777777777666 33 355566655422 2 27999
Q ss_pred EEECCCCCCCCCCcchHHHHHHHhhcCC-cEEEEe
Q 031325 117 VVMNPPFGTRKKGVDMDFLSMALKVASQ-AVYSLH 150 (161)
Q Consensus 117 i~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 150 (161)
|++.-..|..........+..+.+.|++ +..++.
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 9998888888888888999999999984 444433
No 234
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.42 E-value=3.4e-06 Score=63.22 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=70.0
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC---cccEE
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG---HVDTV 117 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~---~~D~i 117 (161)
+.+.++.+|||+|+-+|+-+..+|.. ..+.|++.|.+...+...+.++.+.|+ +..++..|..+++... +||-|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 34568899999999999988888875 456999999999999999999999999 7888889998765322 79999
Q ss_pred EECCCCCC
Q 031325 118 VMNPPFGT 125 (161)
Q Consensus 118 ~~~~p~~~ 125 (161)
+.+.|++-
T Consensus 317 LLDAPCSG 324 (460)
T KOG1122|consen 317 LLDAPCSG 324 (460)
T ss_pred eecCCCCC
Confidence 99999865
No 235
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.39 E-value=3.2e-06 Score=61.27 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=58.3
Q ss_pred eEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC---CcccEEEECCCCCCC
Q 031325 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---GHVDTVVMNPPFGTR 126 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---~~~D~i~~~~p~~~~ 126 (161)
+++|+.||.|++...+.+.|...+.++|+++.+++..+.|... .+..+|+.++... ..+|++++.||+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6899999999999988888888899999999999998888743 2566777776542 279999999998643
No 236
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.35 E-value=3.7e-06 Score=58.40 Aligned_cols=95 Identities=19% Similarity=0.222 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHhhcCCCC--CCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc-CC--ceEEEEcc
Q 031325 31 HIASRMLYTAENSFGDVS--NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCD 104 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~~d 104 (161)
+....+.+.+....+... +.++||+|.|---+--.+-.+ .....+|.|+|+..++.|+.++..+ ++ .+......
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 334455555555544333 457899987765433223222 3469999999999999999998876 44 34443332
Q ss_pred ccc-ccC-----CCcccEEEECCCCCC
Q 031325 105 IRN-LEW-----RGHVDTVVMNPPFGT 125 (161)
Q Consensus 105 ~~~-~~~-----~~~~D~i~~~~p~~~ 125 (161)
-.+ +.. .+.||+.+||||||.
T Consensus 139 ~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 139 DSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred CccccccccccccceeeeEecCCCcch
Confidence 222 211 127999999999986
No 237
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=8.6e-06 Score=60.27 Aligned_cols=96 Identities=24% Similarity=0.247 Sum_probs=77.7
Q ss_pred CCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEcccccccCC--CcccEEEECCCCC
Q 031325 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWR--GHVDTVVMNPPFG 124 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~--~~~D~i~~~~p~~ 124 (161)
+.+|+|.-+|+|.-++..+.- +...++.-|+||.+++++++|+..+ +.+...+..|+..+-.. ..||+|=.||.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPF-- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPF-- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCC--
Confidence 789999999999999988764 4448999999999999999999988 44777777999886555 38999998876
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+-...+++.+.+..++.+++..
T Consensus 131 ----GSPaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 131 ----GSPAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred ----CCCchHHHHHHHHhhcCCEEEE
Confidence 3344899999999985444443
No 238
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.25 E-value=1.6e-05 Score=58.98 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=75.6
Q ss_pred CCeEEEecCCcchHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHh--h--cC-C---ceEEEEcccccccCCC--cccEE
Q 031325 49 NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAA--D--LE-L---DIDFVQCDIRNLEWRG--HVDTV 117 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D~~~~~~~~a~~~~~--~--~~-~---~~~~~~~d~~~~~~~~--~~D~i 117 (161)
..++|-+|.|.|--..++.+.+ ..+++-+|++|+|++.++++.. . .+ + +++++..|+..+.... +||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4689999999999999999985 7899999999999999995432 1 11 1 6899999998876543 99999
Q ss_pred EECCCCCC---CCCCcchHHHHHHHhhcCC-cEEEEe
Q 031325 118 VMNPPFGT---RKKGVDMDFLSMALKVASQ-AVYSLH 150 (161)
Q Consensus 118 ~~~~p~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~ 150 (161)
|.|.|=-. ..+--..++...+.+.++. ++.+++
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 99766211 1122234778888888874 444444
No 239
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4e-06 Score=54.32 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=62.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC
Q 031325 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG 112 (161)
Q Consensus 38 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~ 112 (161)
..++......+..+.+|+|+|.|++....++.+....+|+|+||-.+..++-..-+.|+ ...|...|+.+.+..+
T Consensus 62 ~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 34455555556678999999999999999998866999999999999999998888887 6778888988887765
No 240
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.23 E-value=1.1e-05 Score=57.89 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=77.8
Q ss_pred HHHHHHHHhhcC----CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh----c-----------
Q 031325 34 SRMLYTAENSFG----DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD----L----------- 94 (161)
Q Consensus 34 ~~~~~~~~~~~~----~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~----~----------- 94 (161)
..+++.+....+ .....+||-+|||-|+++.++|.+|. .+.|.|.|--|+-..+-.+.. .
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 344444444433 23456899999999999999999988 999999999886554431110 0
Q ss_pred --------------------------CCceEEEEcccccccCCC----cccEEEECCCCCCCCCCcchHHHHHHHhhcCC
Q 031325 95 --------------------------ELDIDFVQCDIRNLEWRG----HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ 144 (161)
Q Consensus 95 --------------------------~~~~~~~~~d~~~~~~~~----~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
+-++....||..+..... +||+|+.. |..-....-.++++.+.+++++
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeechHHHHHHHHHHHHHhcc
Confidence 004566777777754432 89999874 4443445456899999999997
Q ss_pred cEEEEe
Q 031325 145 AVYSLH 150 (161)
Q Consensus 145 ~~~~~~ 150 (161)
+++.+.
T Consensus 195 gG~WIN 200 (270)
T PF07942_consen 195 GGYWIN 200 (270)
T ss_pred CCEEEe
Confidence 666554
No 241
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.19 E-value=2.4e-05 Score=57.59 Aligned_cols=89 Identities=17% Similarity=0.076 Sum_probs=76.0
Q ss_pred CeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCCCCCC
Q 031325 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKKG 129 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~~ 129 (161)
...+|+|.|.|+.+..+... ..++-+++.+...+-.++.++. .| +..+.+|..+..+ +-|+|++--..|+...+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~P--~~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDTP--KGDAIWMKWILHDWTDE 252 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC--cceecccccccCC--CcCeEEEEeecccCChH
Confidence 68999999999999998884 4579999999888888877776 55 7888888887633 46899999999999999
Q ss_pred cchHHHHHHHhhcCC
Q 031325 130 VDMDFLSMALKVASQ 144 (161)
Q Consensus 130 ~~~~~~~~~~~~~~~ 144 (161)
.-.+++++|+..+++
T Consensus 253 dcvkiLknC~~sL~~ 267 (342)
T KOG3178|consen 253 DCVKILKNCKKSLPP 267 (342)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999984
No 242
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.19 E-value=1.5e-05 Score=54.86 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=58.8
Q ss_pred cccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEE
Q 031325 22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV 101 (161)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~ 101 (161)
+...|+.. -...+++.+. ...+..+|.|+|||.+.++..+.+ +. +|+..|+... +-.+.
T Consensus 51 Qv~~WP~n--Pvd~iI~~l~---~~~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~--------------n~~Vt 109 (219)
T PF05148_consen 51 QVKKWPVN--PVDVIIEWLK---KRPKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP--------------NPRVT 109 (219)
T ss_dssp HHCTSSS---HHHHHHHHHC---TS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEE
T ss_pred HHhcCCCC--cHHHHHHHHH---hcCCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC--------------CCCEE
Confidence 44455544 3344444443 223457999999999999866542 23 7999998541 22578
Q ss_pred EcccccccCCC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 102 QCDIRNLEWRG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 102 ~~d~~~~~~~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+|+...|..+ +.|++++.... .......++.++.|+|++++.+..
T Consensus 110 acdia~vPL~~~svDv~VfcLSL---MGTn~~~fi~EA~RvLK~~G~L~I 156 (219)
T PF05148_consen 110 ACDIANVPLEDESVDVAVFCLSL---MGTNWPDFIREANRVLKPGGILKI 156 (219)
T ss_dssp ES-TTS-S--TT-EEEEEEES------SS-HHHHHHHHHHHEEEEEEEEE
T ss_pred EecCccCcCCCCceeEEEEEhhh---hCCCcHHHHHHHHheeccCcEEEE
Confidence 89998888876 99999986554 345556999999999995444444
No 243
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.13 E-value=7.6e-06 Score=55.62 Aligned_cols=64 Identities=27% Similarity=0.329 Sum_probs=43.3
Q ss_pred CCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccc---------cCC--Cc
Q 031325 48 SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL---------EWR--GH 113 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~---------~~~--~~ 113 (161)
.+.+++|+||++|+++..+.+++ ...|+|+|+.+. ... .+...++|+.+. ... ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 44799999999999999999986 569999999876 111 344555554432 111 27
Q ss_pred ccEEEECCC
Q 031325 114 VDTVVMNPP 122 (161)
Q Consensus 114 ~D~i~~~~p 122 (161)
+|+|++|..
T Consensus 92 ~dlv~~D~~ 100 (181)
T PF01728_consen 92 FDLVLSDMA 100 (181)
T ss_dssp ESEEEE---
T ss_pred cceeccccc
Confidence 999999874
No 244
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.11 E-value=3e-05 Score=58.56 Aligned_cols=96 Identities=26% Similarity=0.270 Sum_probs=70.8
Q ss_pred CCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-c--eEEEEccccccc--CCCcccEEEECC
Q 031325 49 NKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRNLE--WRGHVDTVVMNP 121 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~--~~~~~~d~~~~~--~~~~~D~i~~~~ 121 (161)
+.++||.-+|+|.-++..+.- +...|+.-|+|+.+++..++|++.+++ . +.+.+.|+..+- ....||+|=.||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 458999999999988887764 567999999999999999999999888 3 688999998865 334899999987
Q ss_pred CCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 122 PFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 122 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
- +-...+++.+.+..+.++++..
T Consensus 130 f------GSp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 130 F------GSPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp S------S--HHHHHHHHHHEEEEEEEEE
T ss_pred C------CCccHhHHHHHHHhhcCCEEEE
Confidence 6 4445999999999985444433
No 245
>PRK11524 putative methyltransferase; Provisional
Probab=98.09 E-value=1.9e-05 Score=57.57 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh
Q 031325 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~ 93 (161)
....+++.+.... ..+|+.|||+.||+|+.+++..+.+. +.+|+|++++.++.|++++..
T Consensus 193 kP~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 193 KPEALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred ChHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 3445555555542 24789999999999999999888865 999999999999999999864
No 246
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.08 E-value=0.00015 Score=50.41 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=68.4
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC----cccEE
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG----HVDTV 117 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~----~~D~i 117 (161)
....++.+||-+|+.+|.....++.. + .+.|+++|.++...+..-...++.. |+-.+.+|+....... ..|+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TTSGGGGTTTS--EEEE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCCChHHhhcccccccEE
Confidence 34567899999999999998888875 3 5699999999977655544333322 7999999998765432 89999
Q ss_pred EECCCCCCCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 118 VMNPPFGTRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 118 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
++|-. ...+..=+..++...|+.+++++
T Consensus 148 ~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 148 FQDVA----QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp EEE-S----STTHHHHHHHHHHHHEEEEEEEE
T ss_pred EecCC----ChHHHHHHHHHHHhhccCCcEEE
Confidence 99876 44444455666667888544444
No 247
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=98.06 E-value=3.3e-05 Score=57.06 Aligned_cols=98 Identities=20% Similarity=0.263 Sum_probs=67.6
Q ss_pred eEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC---cccEEEECCCCCCCC
Q 031325 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG---HVDTVVMNPPFGTRK 127 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~D~i~~~~p~~~~~ 127 (161)
+++|+.||.|++...+.+.|...+.++|+++.+.+.-+.|.. ....+|+.++.... .+|+++..||+..++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------ccccccccccccccccccceEEEeccCCceEe
Confidence 689999999999999999888899999999999999888874 78889998876543 499999999975541
Q ss_pred C--------CcchHHHHHHHhh---cCCcEEEEeccCc
Q 031325 128 K--------GVDMDFLSMALKV---ASQAVYSLHKTST 154 (161)
Q Consensus 128 ~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~ 154 (161)
. +.....+....++ .++.++++.|..+
T Consensus 76 ~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~ 113 (335)
T PF00145_consen 76 IAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPG 113 (335)
T ss_dssp TTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGG
T ss_pred ccccccccccccchhhHHHHHHHhhccceEEEecccce
Confidence 1 1111223333333 3467777776543
No 248
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=98.06 E-value=2.8e-05 Score=61.04 Aligned_cols=102 Identities=20% Similarity=0.310 Sum_probs=68.3
Q ss_pred cccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHhhcCC
Q 031325 22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLEL 96 (161)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~~ 96 (161)
..+.+.++.++...+...+... ..++..+.|++||+|.+.....+. ....++|.+..+.+...++.+..-++.
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~--~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGK--KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccC--CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 3456667777777665543321 124568999999999988765431 224799999999999999998655543
Q ss_pred ---ceEEEEcccccc-cCC-C-cccEEEECCCCCC
Q 031325 97 ---DIDFVQCDIRNL-EWR-G-HVDTVVMNPPFGT 125 (161)
Q Consensus 97 ---~~~~~~~d~~~~-~~~-~-~~D~i~~~~p~~~ 125 (161)
......+|.... ... . .||+|++||||+.
T Consensus 271 ~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 271 DYANFNIINADTLTTKEWENENGFEVVVSNPPYSI 305 (501)
T ss_pred CccccCcccCCcCCCccccccccCCEEeecCCccc
Confidence 223334444332 221 2 7999999999865
No 249
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.04 E-value=9.1e-05 Score=53.46 Aligned_cols=102 Identities=24% Similarity=0.275 Sum_probs=60.6
Q ss_pred CCCeEEEecCCcch-HHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHh-hcCC--ceEEEEcccccccCCC-cccEEEEC
Q 031325 48 SNKVVADFGCGCGT-LGAAATLL-G-ADQVIAIDIDSDSLELASENAA-DLEL--DIDFVQCDIRNLEWRG-HVDTVVMN 120 (161)
Q Consensus 48 ~~~~vlD~g~G~G~-~~~~la~~-~-~~~v~~~D~~~~~~~~a~~~~~-~~~~--~~~~~~~d~~~~~~~~-~~D~i~~~ 120 (161)
.+.+|+=+|||+=- -++.+++. + ...++++|+++.+++.+++... ..++ ++.++.+|..+..... .||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 34699999999754 44455543 3 3489999999999999999877 3344 7999999998765433 89999875
Q ss_pred CCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 121 PPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 121 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.--+. ......++++.+.+.++++..++.
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCCCcEEEE
Confidence 44332 334566999999999986555555
No 250
>PHA01634 hypothetical protein
Probab=98.02 E-value=5.4e-05 Score=47.89 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=45.4
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL 96 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~ 96 (161)
..+++|+|+|++-|..+++.+-+|+..|+++|.++...+..+++++...+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 36889999999999999999999999999999999999999998876543
No 251
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.96 E-value=0.00029 Score=45.83 Aligned_cols=95 Identities=27% Similarity=0.377 Sum_probs=63.9
Q ss_pred EEEecCCcchHHHHHHHcCC--CeEEEEeCChHHHHHHHHHHhhcCCc-eEEEEccccc--ccCCC--cccEEEECCCCC
Q 031325 52 VADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN--LEWRG--HVDTVVMNPPFG 124 (161)
Q Consensus 52 vlD~g~G~G~~~~~la~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~--~~~~~--~~D~i~~~~p~~ 124 (161)
++|+|||+|... .++.... ..++|+|+++.++..++......+.. +.+..+|... .+... .||++.....++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 3333322 38899999999999865554432222 5788888776 44443 699995545544
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
+.. ....+..+.+.+++.+.++.
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEE
Confidence 433 45888888888875444333
No 252
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.95 E-value=0.00044 Score=51.17 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCCeEEEecCCcchHHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHhhcC---CceEEEEcccccc----cCC---C
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLE---LDIDFVQCDIRNL----EWR---G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~----~~~---~ 112 (161)
++..++|+|||+|.-+..+.+. ...+++++|+|..+++.+..++.... +.+..+++|..+. +.. .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 5568999999999876655432 13489999999999999999888322 2566688888663 111 1
Q ss_pred cccEEEE-CCCCCCCCCCcchHHHHHHHh-hcCC
Q 031325 113 HVDTVVM-NPPFGTRKKGVDMDFLSMALK-VASQ 144 (161)
Q Consensus 113 ~~D~i~~-~~p~~~~~~~~~~~~~~~~~~-~~~~ 144 (161)
...++++ -..++.+.......++..+.+ .+++
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~ 189 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP 189 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC
Confidence 3555554 446777777888899999988 7764
No 253
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.95 E-value=4.1e-05 Score=53.55 Aligned_cols=42 Identities=36% Similarity=0.457 Sum_probs=35.0
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~ 89 (161)
.+++.|||+.||+|+.+.+..+.+. +.+|+|+++..+++|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 3689999999999999999988865 99999999999999864
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=5.2e-05 Score=53.07 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=55.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCce-EEEEcccccccCCC-
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI-DFVQCDIRNLEWRG- 112 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~- 112 (161)
++...+....-..++.++||+|+.||+++..+.++|+.+|+++|..-..+..--++ +.++ .....|+..+.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPEDF 141 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCHHHc
Confidence 44443333334567899999999999999999999999999999877655432111 1122 23334444443322
Q ss_pred --cccEEEECCCCC
Q 031325 113 --HVDTVVMNPPFG 124 (161)
Q Consensus 113 --~~D~i~~~~p~~ 124 (161)
..|+++++-.|-
T Consensus 142 ~~~~d~~v~DvSFI 155 (245)
T COG1189 142 TEKPDLIVIDVSFI 155 (245)
T ss_pred ccCCCeEEEEeehh
Confidence 567888876653
No 255
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.89 E-value=0.00038 Score=53.51 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=76.2
Q ss_pred eEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCCCCCCCCC
Q 031325 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGTRKKG 129 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~~~~~ 129 (161)
+++-+|||.-.+...+.+.|...++.+|+|+-.++.+............+...|...+.++. +||+|+.=+-++..-..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~d 130 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFED 130 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCC
Confidence 89999999999999999888889999999999999887655432226789999999988776 89999986666554222
Q ss_pred cc--------hHHHHHHHhhcC-CcEEEEe
Q 031325 130 VD--------MDFLSMALKVAS-QAVYSLH 150 (161)
Q Consensus 130 ~~--------~~~~~~~~~~~~-~~~~~~~ 150 (161)
.. ..++.+++++++ ++.|++.
T Consensus 131 e~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 131 EDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred chhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 22 245778888886 4444443
No 256
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.88 E-value=0.00011 Score=52.02 Aligned_cols=72 Identities=25% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVM 119 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~ 119 (161)
.+.+|+|+|||-=-+++.+... ....++|+|||..+++.....+...+.+.++...|...-++....|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence 3689999999998888876654 34599999999999999999999888888888889888766667888876
No 257
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.88 E-value=9.3e-05 Score=52.49 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=59.5
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCCCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~ 125 (161)
....+|.|+|||.+.++. .. ...|+..|+.+ .+-.++.+|+...+..+ +.|++++....
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~svDvaV~CLSL-- 238 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA--------------VNERVIACDMRNVPLEDESVDVAVFCLSL-- 238 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec--------------CCCceeeccccCCcCccCcccEEEeeHhh--
Confidence 345689999999998765 22 34899999743 13468888999988877 99999984443
Q ss_pred CCCCcchHHHHHHHhhcC--CcEEEEe
Q 031325 126 RKKGVDMDFLSMALKVAS--QAVYSLH 150 (161)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~--~~~~~~~ 150 (161)
+. .....++.++.|+|+ +.+|+..
T Consensus 239 Mg-tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 239 MG-TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred hc-ccHHHHHHHHHHHhccCceEEEEe
Confidence 23 334489999999998 3444444
No 258
>PRK13699 putative methylase; Provisional
Probab=97.88 E-value=8.1e-05 Score=52.51 Aligned_cols=58 Identities=24% Similarity=0.225 Sum_probs=46.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (161)
.+...+..... .+++.|||+.||+|+.+++..+.+. +.+|+|+++...+.+.++++..
T Consensus 151 ~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 34444443322 3788999999999999999888765 9999999999999999888753
No 259
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=9.8e-05 Score=54.64 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=67.6
Q ss_pred EEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC--cccEEEECCCCCCCC--
Q 031325 52 VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG--HVDTVVMNPPFGTRK-- 127 (161)
Q Consensus 52 vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~D~i~~~~p~~~~~-- 127 (161)
|+|+.||.|++..-+.+.|...+.++|+++.+++.-+.|... .+..+|+.++.... .+|+++..||+...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~a 75 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSDIPDFDILLGGFPCQPFSIA 75 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhhCCCcCEEEecCCCcccchh
Confidence 589999999999999888887888999999999988887643 44567887765432 689999999975542
Q ss_pred ---C---CcchHHHHHHHhhc---CCcEEEEecc
Q 031325 128 ---K---GVDMDFLSMALKVA---SQAVYSLHKT 152 (161)
Q Consensus 128 ---~---~~~~~~~~~~~~~~---~~~~~~~~~~ 152 (161)
. +.....+....+++ ++.++++.|.
T Consensus 76 g~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV 109 (315)
T TIGR00675 76 GKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENV 109 (315)
T ss_pred cccCCCCCchhhHHHHHHHHHhhcCCCEEEeecc
Confidence 1 11112333344443 4677777654
No 260
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00041 Score=47.55 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=75.2
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC----cccEEE
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG----HVDTVV 118 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~----~~D~i~ 118 (161)
.+..++.+||=+|+.+|.....++.. +.+.++++|.++......-..+++.. |+-.+.+|+.....-. ..|+|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-CceeeecccCCcHHhhhhcccccEEE
Confidence 45668899999999999998888875 55689999999988765554444322 7889999997765432 799999
Q ss_pred ECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 119 MNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 119 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.|-. ...+..=+..++...++..+|++.
T Consensus 151 ~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 151 QDVA----QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EecC----CchHHHHHHHHHHHhcccCCeEEE
Confidence 9766 445554566677778885554443
No 261
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.86 E-value=3.9e-05 Score=59.05 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=58.1
Q ss_pred CeEEEecCCcchHHHHHHHcCCCeEEEE---eCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECC---C
Q 031325 50 KVVADFGCGCGTLGAAATLLGADQVIAI---DIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNP---P 122 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~---p 122 (161)
.++||+|||+|+++..|..++. .+..+ |.++..++.|-+ .|+..-+-..-...++... .||+|=|.- |
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhhhccccccCCccchhhhhccccccc
Confidence 4799999999999999999865 33333 334445554432 3432222222234555555 899987643 3
Q ss_pred CCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 123 FGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
++.. + -.++-++-|+|++++|++..
T Consensus 194 W~~~--~--g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 194 WHPN--D--GFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred chhc--c--cceeehhhhhhccCceEEec
Confidence 3322 1 25788889999988888773
No 262
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.84 E-value=0.00014 Score=50.50 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=75.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC----
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---- 111 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---- 111 (161)
+.+.+.+..+....+-|.++|.|.|+++..+...+......+|+++..+.-.+...+....+..++++|+..+..+
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~~I~~~~~ 117 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRFKIEKAFS 117 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccceehHHhhcc
Confidence 3344455555557889999999999999999988888999999999998877776665555777888887654332
Q ss_pred --------C--cccEEEECCCCCCCCCCcchHHHHHHHhh
Q 031325 112 --------G--HVDTVVMNPPFGTRKKGVDMDFLSMALKV 141 (161)
Q Consensus 112 --------~--~~D~i~~~~p~~~~~~~~~~~~~~~~~~~ 141 (161)
+ ..=-++.|.||+.. ...-.+|++++.-.
T Consensus 118 ~~~~Rpw~d~~p~~H~IGNLPf~i~-~pliik~l~~~s~r 156 (326)
T KOG0821|consen 118 ESLKRPWEDDPPNVHIIGNLPFSVS-TPLIIKWLENISCR 156 (326)
T ss_pred hhhcCCcccCCCceEEeccCCcccc-chHHHHHHhhcccc
Confidence 1 11246789998763 45556777776543
No 263
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.83 E-value=4.9e-05 Score=57.02 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=82.0
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC-cccEEEECCC
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG-HVDTVVMNPP 122 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~D~i~~~~p 122 (161)
..++..++|+|||.|....+.+....+.++|++.++..+..+........+ ...++.+|+.+.++++ +||.+.+.-.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 345668999999999999999998777999999999998888776666655 4567888999988877 9999987544
Q ss_pred CCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 123 FGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
-.+ .+.....+.++.+.++++++.++
T Consensus 188 ~~~--~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 188 VCH--APDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ccc--CCcHHHHHHHHhcccCCCceEEe
Confidence 333 23444899999999998777776
No 264
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.82 E-value=6.9e-05 Score=54.87 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=61.8
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC----
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---- 110 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---- 110 (161)
|++.+...+...++..++|..-|.|+.+..+.+. +..+++|+|.|+.+++.+++++...+-++.+++++..++..
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 4455555555668889999999999999999875 45799999999999999999887665589999998876543
Q ss_pred C---CcccEEEECC
Q 031325 111 R---GHVDTVVMNP 121 (161)
Q Consensus 111 ~---~~~D~i~~~~ 121 (161)
. ..+|.|++|.
T Consensus 88 ~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 88 LNGINKVDGILFDL 101 (310)
T ss_dssp TTTTS-EEEEEEE-
T ss_pred ccCCCccCEEEEcc
Confidence 1 1789999863
No 265
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.79 E-value=3.9e-05 Score=54.82 Aligned_cols=135 Identities=18% Similarity=0.269 Sum_probs=85.9
Q ss_pred hhhhhhhcccccccCCc----ccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC-CCeEEEEe
Q 031325 4 KQLESVLGDLEQFSNPK----VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAID 78 (161)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~-~~~v~~~D 78 (161)
+.++..+..+..+.+++ .++++-...++..-..+..+... +...|+.|+-+| -.--.+++++--+ ...+..+|
T Consensus 105 ~~f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~R-GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvD 182 (354)
T COG1568 105 QAFKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSR-GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVD 182 (354)
T ss_pred hhHHHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccc-cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEe
Confidence 34555555556655532 23444333344433333333322 556788899999 4433444444322 45999999
Q ss_pred CChHHHHHHHHHHhhcCC-ceEEEEcccccccCCC---cccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 79 IDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG---HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~---~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
+++..+...++.++..|. ++..+.-|+....+.. .||+.+.+||.... ....++..-...|+
T Consensus 183 IDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~---alk~FlgRGI~tLk 248 (354)
T COG1568 183 IDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIK---ALKLFLGRGIATLK 248 (354)
T ss_pred chHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchhhHH---HHHHHHhccHHHhc
Confidence 999999999999999999 6999999998865544 99999999995431 11234444445555
No 266
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00014 Score=50.04 Aligned_cols=78 Identities=24% Similarity=0.215 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR- 111 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~- 111 (161)
++.+......-..++.+|+|+|+-+|+++..+++.. ...|+++|+.|-..- .++.++++|++..+..
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----------~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----------PGVIFLQGDITDEDTLE 101 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----------CCceEEeeeccCccHHH
Confidence 443333333233467899999999999999999872 235999999772111 0589999999876542
Q ss_pred -------C-cccEEEECCC
Q 031325 112 -------G-HVDTVVMNPP 122 (161)
Q Consensus 112 -------~-~~D~i~~~~p 122 (161)
. .+|+|++|+.
T Consensus 102 ~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred HHHHHcCCCCcceEEecCC
Confidence 1 4699998654
No 267
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00034 Score=52.09 Aligned_cols=74 Identities=26% Similarity=0.315 Sum_probs=60.6
Q ss_pred CCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC----cccEEEECCCCC
Q 031325 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG----HVDTVVMNPPFG 124 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~----~~D~i~~~~p~~ 124 (161)
..+++|+.||.|++..-+...|..-+.++|+++.+++.-+.|... ..+...|+.+..... .+|+++..||+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 358999999999999888888888999999999999988888753 366777777655433 689999999976
Q ss_pred CC
Q 031325 125 TR 126 (161)
Q Consensus 125 ~~ 126 (161)
.+
T Consensus 79 ~F 80 (328)
T COG0270 79 DF 80 (328)
T ss_pred ch
Confidence 54
No 268
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.70 E-value=0.00036 Score=50.64 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=68.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR- 111 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~- 111 (161)
.+++.+...+...++...+|..-|.|+.+..+.+.. .++++|+|.|+.+++.|++.+...+-++.+++++..++...
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEAL 89 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHH
Confidence 455666666667788999999999999999988762 45899999999999999999988776899999987665432
Q ss_pred -----CcccEEEEC
Q 031325 112 -----GHVDTVVMN 120 (161)
Q Consensus 112 -----~~~D~i~~~ 120 (161)
.++|-|++|
T Consensus 90 ~~~~i~~vDGiL~D 103 (314)
T COG0275 90 KELGIGKVDGILLD 103 (314)
T ss_pred HhcCCCceeEEEEe
Confidence 167777775
No 269
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=97.69 E-value=0.00013 Score=53.24 Aligned_cols=75 Identities=24% Similarity=0.212 Sum_probs=51.5
Q ss_pred EEEecCCcchHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccc--------ccccCCCcccEEEEC
Q 031325 52 VADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI--------RNLEWRGHVDTVVMN 120 (161)
Q Consensus 52 vlD~g~G~G~~~~~la~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~--------~~~~~~~~~D~i~~~ 120 (161)
=+|+|.|...+-..+.. .......++|+++..++.|+.+...+++ .+.+++.+. .....+..||.++||
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 46887666544433322 3457999999999999999999998887 455544432 222222269999999
Q ss_pred CCCCCC
Q 031325 121 PPFGTR 126 (161)
Q Consensus 121 ~p~~~~ 126 (161)
|||...
T Consensus 186 PPFfe~ 191 (419)
T KOG2912|consen 186 PPFFEN 191 (419)
T ss_pred Cchhhc
Confidence 998654
No 270
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.62 E-value=0.00047 Score=44.72 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=53.9
Q ss_pred eEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC--C-cccEEEECCCCCCC-------CCCcchHHHHHHHh
Q 031325 73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR--G-HVDTVVMNPPFGTR-------KKGVDMDFLSMALK 140 (161)
Q Consensus 73 ~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~--~-~~D~i~~~~p~~~~-------~~~~~~~~~~~~~~ 140 (161)
+|+|+|+.+.+++.++++++..+. ++++++.+-..+... . ..|++++|.-|-.. ........++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 589999999999999999999887 699999988877652 2 69999999776443 23445578899999
Q ss_pred hcCC
Q 031325 141 VASQ 144 (161)
Q Consensus 141 ~~~~ 144 (161)
.+++
T Consensus 81 lL~~ 84 (140)
T PF06962_consen 81 LLKP 84 (140)
T ss_dssp HEEE
T ss_pred hhcc
Confidence 9873
No 271
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.61 E-value=0.00016 Score=54.92 Aligned_cols=92 Identities=22% Similarity=0.203 Sum_probs=65.4
Q ss_pred eEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC--cccEEEECCCCCCC
Q 031325 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG--HVDTVVMNPPFGTR 126 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~--~~D~i~~~~p~~~~ 126 (161)
.+||+|+|||-++..+++.|...|+++|.=..|...|++...++|. +++++..-.++....+ ..|+++..-.-...
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEl 148 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTEL 148 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhh
Confidence 5999999999999999888888999999999999999999999988 7877777666654432 35655543222222
Q ss_pred CCCcchHHHHHHHhhc
Q 031325 127 KKGVDMDFLSMALKVA 142 (161)
Q Consensus 127 ~~~~~~~~~~~~~~~~ 142 (161)
..+.....++.+++.|
T Consensus 149 igeGalps~qhAh~~L 164 (636)
T KOG1501|consen 149 IGEGALPSLQHAHDML 164 (636)
T ss_pred hccccchhHHHHHHHh
Confidence 2222334555555544
No 272
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.0014 Score=48.86 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=73.6
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHc-C----CCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccCC-------
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLL-G----ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR------- 111 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~-~----~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~------- 111 (161)
...++++|||+|+-+|+-+..+.+. . ...+++-|.++..+....+.+..... +..+...|+...+..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 4468899999999999999888774 2 23899999999999888877765443 444444444333221
Q ss_pred -C--cccEEEECCCCCCCC---------------------CCcchHHHHHHHhhcC---CcEEEEec
Q 031325 112 -G--HVDTVVMNPPFGTRK---------------------KGVDMDFLSMALKVAS---QAVYSLHK 151 (161)
Q Consensus 112 -~--~~D~i~~~~p~~~~~---------------------~~~~~~~~~~~~~~~~---~~~~~~~~ 151 (161)
. .||-|++|-|+..-. +..+...+....++++ ..+|+.|.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 1 899999999976521 1223355677777776 36777774
No 273
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.48 E-value=5.7e-05 Score=46.69 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=37.7
Q ss_pred EEecCCcchHHHHHHHc--CC--CeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccC--C-CcccEEEECCCC
Q 031325 53 ADFGCGCGTLGAAATLL--GA--DQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW--R-GHVDTVVMNPPF 123 (161)
Q Consensus 53 lD~g~G~G~~~~~la~~--~~--~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~-~~~D~i~~~~p~ 123 (161)
||+|+..|..+..+++. .. .+++++|..+. .+..++.+++.+. ++.++.++..+... . .++|+++.|..-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 68999999988887763 12 37999999985 3333334433333 69999999976422 1 389999998762
Q ss_pred CCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 124 GTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
. .......++.+...++++..++++
T Consensus 80 ~---~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 S---YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C---HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2 122335667777777655555544
No 274
>PRK10458 DNA cytosine methylase; Provisional
Probab=97.47 E-value=0.0014 Score=51.02 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=57.1
Q ss_pred CCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------------
Q 031325 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------------- 111 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----------------- 111 (161)
.-+++|+.||.|++...+-+.|...+.++|+++.+.+.-+.|....+ ......+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCccccccccchhhhhhhhhcc
Confidence 34899999999999999887787788999999999888777753211 234455666665421
Q ss_pred -CcccEEEECCCCCCC
Q 031325 112 -GHVDTVVMNPPFGTR 126 (161)
Q Consensus 112 -~~~D~i~~~~p~~~~ 126 (161)
..+|+++..||+..+
T Consensus 167 ~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 167 IPDHDVLLAGFPCQPF 182 (467)
T ss_pred CCCCCEEEEcCCCCcc
Confidence 157999999997654
No 275
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.47 E-value=6.5e-05 Score=54.25 Aligned_cols=72 Identities=25% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCCeEEEecCCcchHHH-HHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCCcccEEEE
Q 031325 48 SNKVVADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGHVDTVVM 119 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~-~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~i~~ 119 (161)
.+..|+|+-+|-|+++. .+...|+..|+++|.||..++..+.+++.++. +...+.+|.....+....|-|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence 45799999999999999 66677888999999999999999999998876 66778888877665556666654
No 276
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.00011 Score=52.68 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=69.9
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCce-EEEEcccccccCCC-cccEEEECCCCCC
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI-DFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~-~~D~i~~~~p~~~ 125 (161)
.+..++|.|||.|-.+. ..+...++|.|++...+..++.. +. ....+|+..++... .||.++.-..-||
T Consensus 45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~------~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS------GGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC------CCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 47899999999995322 12445799999998888876543 23 68899999988876 9999998888777
Q ss_pred C-CCCcchHHHHHHHhhcCCcEE
Q 031325 126 R-KKGVDMDFLSMALKVASQAVY 147 (161)
Q Consensus 126 ~-~~~~~~~~~~~~~~~~~~~~~ 147 (161)
+ ........++++.+.++++..
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~ 138 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGN 138 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCc
Confidence 7 556666899999999985333
No 277
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=97.40 E-value=0.0027 Score=42.41 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=57.6
Q ss_pred cCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEc
Q 031325 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103 (161)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~ 103 (161)
.+|-.+.+.+..+++.+..... .+.+|+-+||-+-...+.-......+++..|+|...-.. +-+ .++.-
T Consensus 3 sQfwYs~~T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~~~-~F~fy 71 (162)
T PF10237_consen 3 SQFWYSDETAEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------GGD-EFVFY 71 (162)
T ss_pred cccccCHHHHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------CCc-ceEEC
Confidence 3455566778888887776422 457999999988665555422244599999998754332 212 35555
Q ss_pred ccccccC-----CCcccEEEECCCC
Q 031325 104 DIRNLEW-----RGHVDTVVMNPPF 123 (161)
Q Consensus 104 d~~~~~~-----~~~~D~i~~~~p~ 123 (161)
|...... ..+||+|++||||
T Consensus 72 D~~~p~~~~~~l~~~~d~vv~DPPF 96 (162)
T PF10237_consen 72 DYNEPEELPEELKGKFDVVVIDPPF 96 (162)
T ss_pred CCCChhhhhhhcCCCceEEEECCCC
Confidence 5544321 1289999999999
No 278
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00075 Score=50.08 Aligned_cols=126 Identities=10% Similarity=0.006 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-----ceEEEE
Q 031325 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-----DIDFVQ 102 (161)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~ 102 (161)
+......+..+....+.+..++|||+|.|+|.-..++... ....++.+|.|+..-+........... +..-+.
T Consensus 95 Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 95 YASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc
Confidence 3444555666666677788899999999999887777654 235888889888877666554443322 333444
Q ss_pred cccccccCCCcccEEEECCCCCC-CCCCcchHHHHHHHhhcC-CcEEEEeccCcc
Q 031325 103 CDIRNLEWRGHVDTVVMNPPFGT-RKKGVDMDFLSMALKVAS-QAVYSLHKTSTR 155 (161)
Q Consensus 103 ~d~~~~~~~~~~D~i~~~~p~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 155 (161)
.|-..++..+.+++++..--.-+ .........++.+|.++. ++..+++-.++.
T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 45455555446777765322221 122222247888999886 566666655553
No 279
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.31 E-value=2.2e-05 Score=53.90 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=56.5
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCCCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPPFGT 125 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p~~~ 125 (161)
..+.++||+|+|.|.++..++.. ..+|++.|+|..|....++. +.++ -...+....+ ++|+|.|-.-..
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~ynV----l~~~ew~~t~~k~dli~clNlLD- 180 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NYNV----LTEIEWLQTDVKLDLILCLNLLD- 180 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CCce----eeehhhhhcCceeehHHHHHHHH-
Confidence 34579999999999999999986 56899999999998866542 2121 1112222222 688888732222
Q ss_pred CCCCcchHHHHHHHhhcC
Q 031325 126 RKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~ 143 (161)
+.....+.++.++.++.
T Consensus 181 -Rc~~p~kLL~Di~~vl~ 197 (288)
T KOG3987|consen 181 -RCFDPFKLLEDIHLVLA 197 (288)
T ss_pred -hhcChHHHHHHHHHHhc
Confidence 12223377888888875
No 280
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.31 E-value=0.00042 Score=47.50 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=48.8
Q ss_pred CCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcC-------C-ceEEEEcccccccC
Q 031325 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-------L-DIDFVQCDIRNLEW 110 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-------~-~~~~~~~d~~~~~~ 110 (161)
...+.|||||.|++++.++.. +..-+.|.||-...-+..+.+++... . ++.+...++....+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence 357999999999999999986 56689999998888888888777644 3 56777777766543
No 281
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.19 E-value=0.00071 Score=48.46 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcC---------------------------C--
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE---------------------------L-- 96 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~---------------------------~-- 96 (161)
..++.++||+|||+-......|.....+++..|..+.-.+..++.++..+ +
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 34577999999999655433333346799999999998887776443211 1
Q ss_pred ce-EEEEcccccccCCC-------cccEEEECCCCCC--CCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 97 DI-DFVQCDIRNLEWRG-------HVDTVVMNPPFGT--RKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 97 ~~-~~~~~d~~~~~~~~-------~~D~i~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+ .++..|+++.++-. +||+|++...... .+...+...++++.+++|++++++.
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 13 37788888754421 4999998444322 2556677889999999997777665
No 282
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=97.17 E-value=0.001 Score=40.94 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCCh
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~ 81 (161)
.++.-++..........+....+|+|||+|-+.--|.+-|. .-.|+|.-.
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 44555555555555554566899999999988888877666 788888643
No 283
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.0017 Score=50.56 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=73.9
Q ss_pred CCeEEEecCCcchHHHHHHHc-----CCCeEEEEeCChHHHHHHHH-HHhhcCCceEEEEcccccccCC-CcccEEEEC-
Q 031325 49 NKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASE-NAADLELDIDFVQCDIRNLEWR-GHVDTVVMN- 120 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~-----~~~~v~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~-~~~D~i~~~- 120 (161)
..+|+-+|+|.|-+.....+. ...+++++|.+|.++-..+. +.+.++-+++++..|..++... .+.|+++.-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 347899999999765554331 23499999999999876654 3333444899999999998865 489998864
Q ss_pred -CCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 121 -PPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 121 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
..|+ ..++.++.+..+-..+++.+..+.
T Consensus 448 LGSFG--DNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 448 LGSFG--DNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hcccc--CccCCHHHHHHHHhhcCCCceEcc
Confidence 3344 667888999999999997655554
No 284
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0023 Score=46.46 Aligned_cols=107 Identities=13% Similarity=0.158 Sum_probs=80.0
Q ss_pred CCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhc--CC---ceEEEEcccccccC---CCcccE
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL--EL---DIDFVQCDIRNLEW---RGHVDT 116 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~--~~---~~~~~~~d~~~~~~---~~~~D~ 116 (161)
...+++++-+|.|.|......+++ ...++.-+|++...++..++..... +. ++.+..||...+-. ..+||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 346789999999999999998887 3669999999999999999987753 22 78899998876532 238999
Q ss_pred EEECC--CCCCCCCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 117 VVMNP--PFGTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 117 i~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
|+.+. |-+..-.--...++..+.+.+++.+|+....
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99753 3332222233367888889999877777654
No 285
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0081 Score=41.83 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=74.5
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC---CCcccEEEECCCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RGHVDTVVMNPPF 123 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~i~~~~p~ 123 (161)
.++.+||.+|-|-|...-.+-+.....=+.+|.+|..++.++..--....++.+..+-.++... ...||-|+.+. |
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT-y 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT-Y 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec-h
Confidence 4789999999999998888877766677888999999998887654444478888876655322 23899998763 2
Q ss_pred CCCCCCcchHHHHHHHhhcCC-cEEEEec
Q 031325 124 GTRKKGVDMDFLSMALKVASQ-AVYSLHK 151 (161)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 151 (161)
+.. .++...+.+.+.+++++ +++..||
T Consensus 179 ~e~-yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SEL-YEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhH-HHHHHHHHHHHhhhcCCCceEEEec
Confidence 222 23444777888899984 6666664
No 286
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.86 E-value=0.0098 Score=41.19 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=52.2
Q ss_pred CCCeEEEecCCcchHHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC-------C-
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR-------G- 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-------~- 112 (161)
+++.|+|+|.-.|+.++.+|.. +.++|+|+|++-...... .++.+.. ++++++||..+.... .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 6789999999999988888753 346999999965443321 2222222 799999999875321 1
Q ss_pred -cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 113 -HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 113 -~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
...+|+-|.--.+ .--...++....++..+-|.+...
T Consensus 110 ~~~vlVilDs~H~~---~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 110 PHPVLVILDSSHTH---EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp -SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CCceEEEECCCccH---HHHHHHHHHhCccCCCCCEEEEEe
Confidence 3446666655322 222255666666677677766543
No 287
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.77 E-value=0.00095 Score=50.60 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=54.3
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEccccccc
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLE 109 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~ 109 (161)
.+|..|-|++||.|-+++.+++.+ +.|++-|++|++++..+.+++-+.+ ++..+..|+.++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 367899999999999999999976 5999999999999999999987766 4788888887654
No 288
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.68 E-value=0.015 Score=41.65 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCeEEEecCCcchHHHHHHHc---------CCCeEEEEeCChHHHHHHHHHHhh
Q 031325 49 NKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELASENAAD 93 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~---------~~~~v~~~D~~~~~~~~a~~~~~~ 93 (161)
.-+|+|+|+|+|.++..+.+. ...+++.+|+||.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999998887763 124899999999999988888776
No 289
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.65 E-value=0.0059 Score=42.45 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHhhcCCCC----CCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEccc
Q 031325 30 PHIASRMLYTAENSFGDVS----NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105 (161)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~----~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~ 105 (161)
.+-++.+++.+........ .-++||+||=+.......... . .|+.||+++ +. -.+.+.|.
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~-f-dvt~IDLns----------~~----~~I~qqDF 92 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW-F-DVTRIDLNS----------QH----PGILQQDF 92 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc-e-eeEEeecCC----------CC----CCceeecc
Confidence 3444444444444333222 258999999877655443322 4 699999987 11 24556666
Q ss_pred ccccCC----CcccEEEECCCCCCCCCCcc-hHHHHHHHhhcC
Q 031325 106 RNLEWR----GHVDTVVMNPPFGTRKKGVD-MDFLSMALKVAS 143 (161)
Q Consensus 106 ~~~~~~----~~~D~i~~~~p~~~~~~~~~-~~~~~~~~~~~~ 143 (161)
.+.+.. +.||+|.++......+.... -+.+..+...|+
T Consensus 93 m~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~ 135 (219)
T PF11968_consen 93 MERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK 135 (219)
T ss_pred ccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 665432 28999999888766543333 377888888887
No 290
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0091 Score=43.80 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhcCC----CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHH---hh------------
Q 031325 33 ASRMLYTAENSFGD----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA---AD------------ 93 (161)
Q Consensus 33 ~~~~~~~~~~~~~~----~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~---~~------------ 93 (161)
...+++.+...++. ....+||-+|||.|+++..++..|. .+-|-|.|--|+=...-.+ +.
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 33445555544443 2345899999999999999999876 7777777766653322211 00
Q ss_pred ------------------------cCC--ceEEEEcccccccCCC----cccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 94 ------------------------LEL--DIDFVQCDIRNLEWRG----HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 94 ------------------------~~~--~~~~~~~d~~~~~~~~----~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
++. +.+...||..+.-... .||+|+.. |..-...--.++++.+..+++
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fFIDTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FFIDTAHNILEYIDTIYKILK 287 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EEeechHHHHHHHHHHHHhcc
Confidence 000 1223446666543322 69998875 433334444588999999998
Q ss_pred CcEEEE
Q 031325 144 QAVYSL 149 (161)
Q Consensus 144 ~~~~~~ 149 (161)
++++.+
T Consensus 288 ~GGvWi 293 (369)
T KOG2798|consen 288 PGGVWI 293 (369)
T ss_pred CCcEEE
Confidence 665554
No 291
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=0.01 Score=44.67 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=66.4
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC-CC--cccEE
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-RG--HVDTV 117 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~--~~D~i 117 (161)
+.+.++.+|+|.||-.|.-+..++.. ....+++.|.++...+..++.+...|. .++...+|...... +. ....+
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~i 288 (413)
T KOG2360|consen 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYI 288 (413)
T ss_pred cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeEE
Confidence 45567789999999999998888864 356999999999999999999999888 66777888877422 22 67789
Q ss_pred EECCCCCC
Q 031325 118 VMNPPFGT 125 (161)
Q Consensus 118 ~~~~p~~~ 125 (161)
+++|+.+-
T Consensus 289 L~DpscSg 296 (413)
T KOG2360|consen 289 LVDPSCSG 296 (413)
T ss_pred EeCCCCCC
Confidence 99999753
No 292
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.15 Score=34.46 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=73.1
Q ss_pred CcccccCCCCChhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHH--cCCCeEEEEeCChHHHHHHHHHHhhcCC
Q 031325 19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL 96 (161)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~ 96 (161)
..|+..++-..++.+..++.......+ .+.+|.-+.|-+=+.-...-. .+..+|+..|.+... ...|
T Consensus 46 eDwQlsqfwy~~eta~~La~e~v~~s~--e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRF--------e~yg- 114 (217)
T KOG3350|consen 46 EDWQLSQFWYSDETARKLAAERVEASG--EGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRF--------ELYG- 114 (217)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHhhcc--cCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhH--------Hhcc-
Confidence 356667777778889999888887533 457888888887552222222 245689999987643 3333
Q ss_pred ceEEEEcccccccC-C----CcccEEEECCCCCCCCCCcchHHHHHHHhhcCC-cEEEEe
Q 031325 97 DIDFVQCDIRNLEW-R----GHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ-AVYSLH 150 (161)
Q Consensus 97 ~~~~~~~d~~~~~~-~----~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 150 (161)
-.|+.-|...... . .+||+|+++|||-.. +-..+.-..+.++.++ .-.++|
T Consensus 115 -~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~--eCl~Kts~tik~L~r~~~kvilC 171 (217)
T KOG3350|consen 115 -TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSE--ECLAKTSETIKRLQRNQKKVILC 171 (217)
T ss_pred -ceeEEeccCCCCCCHHHHHhcccEEEeCCccccc--hhhhhhHHHHHHHhcCCceEEEe
Confidence 3677777665322 1 189999999998642 2223444445555542 234444
No 293
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.0032 Score=42.81 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=45.5
Q ss_pred CCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEc-ccccccC---------CCc
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQC-DIRNLEW---------RGH 113 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~-d~~~~~~---------~~~ 113 (161)
.++.+|||+||-+|.++.-.-++ +.+.|.|+|+-. +. .. .++++++ |+++... ...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~--p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE--PPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc--CCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 46889999999999999988876 567999999832 11 11 3555555 6655321 127
Q ss_pred ccEEEECCC
Q 031325 114 VDTVVMNPP 122 (161)
Q Consensus 114 ~D~i~~~~p 122 (161)
.|+|+.+..
T Consensus 137 VdvVlSDMa 145 (232)
T KOG4589|consen 137 VDVVLSDMA 145 (232)
T ss_pred ccEEEeccC
Confidence 899998743
No 294
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.26 E-value=0.065 Score=38.29 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHh
Q 031325 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~ 92 (161)
...+|++|+|+|-.++.+|......++..|+ +..+...+.+..
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~~ 129 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNRD 129 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhhh
Confidence 4579999999998888888765558888897 555555554433
No 295
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.047 Score=40.94 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCCCChhHHHHHHHH-------HHhhcCCCCCCeEEEecCCcchHHHHHHHc---------CCCeEEEEeCChHHHHHHH
Q 031325 25 QYPTGPHIASRMLYT-------AENSFGDVSNKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELAS 88 (161)
Q Consensus 25 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~vlD~g~G~G~~~~~la~~---------~~~~v~~~D~~~~~~~~a~ 88 (161)
.|.|.++++...-.. .....+.+.+-.++|+|+|.|.+...+.+. ...++..+|+|++..+.-+
T Consensus 47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 455666655433222 222334445668999999999988887652 2459999999999999888
Q ss_pred HHHhhcC
Q 031325 89 ENAADLE 95 (161)
Q Consensus 89 ~~~~~~~ 95 (161)
++++...
T Consensus 127 ~~L~~~~ 133 (370)
T COG1565 127 ETLKATE 133 (370)
T ss_pred HHHhccc
Confidence 8887653
No 296
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=96.20 E-value=0.22 Score=35.59 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccc-
Q 031325 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL- 108 (161)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~- 108 (161)
++.-+..++.+... .++.+ +..-||+-.++..+.+- ..++..+|+.|.-....+.++.. +.++.+..+|-..-
T Consensus 74 pa~l~~yl~~i~~l---N~~~~-l~~YpGSP~lA~~llR~-qDRl~l~ELHp~D~~~L~~~f~~-d~~vrv~~~DG~~~l 147 (279)
T COG2961 74 PAELEPYLDAVRQL---NPGGG-LRYYPGSPLLARQLLRE-QDRLVLTELHPSDAPLLRNNFAG-DRRVRVLRGDGFLAL 147 (279)
T ss_pred hHHHHHHHHHHHHh---CCCCC-cccCCCCHHHHHHHcch-hceeeeeecCccHHHHHHHHhCC-CcceEEEecCcHHHH
Confidence 34444444444443 12222 88899998888888764 56999999999999999988872 33889999998653
Q ss_pred ----cCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcC---CcEEEEec
Q 031325 109 ----EWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS---QAVYSLHK 151 (161)
Q Consensus 109 ----~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 151 (161)
++.+.=-+|+.||||... +++.+.++-+.+..+ .++|.++-
T Consensus 148 ~a~LPP~erRglVLIDPPfE~~--~eY~rvv~~l~~~~kRf~~g~yaiWY 195 (279)
T COG2961 148 KAHLPPKERRGLVLIDPPFELK--DEYQRVVEALAEAYKRFATGTYAIWY 195 (279)
T ss_pred hhhCCCCCcceEEEeCCCcccc--cHHHHHHHHHHHHHHhhcCceEEEEE
Confidence 222256789999999864 455566655555554 68888874
No 297
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=96.14 E-value=0.028 Score=42.40 Aligned_cols=42 Identities=29% Similarity=0.216 Sum_probs=34.3
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~ 89 (161)
.-+.++|+|+|.|+++..++-...-.|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 346899999999999999987644499999999777666654
No 298
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.0065 Score=47.04 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=72.3
Q ss_pred CCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEccccccc--CC---CcccEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE--WR---GHVDTVV 118 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~---~~~D~i~ 118 (161)
++-+|||.-|++|.-++..++. +...+++-|.++.+++..+.|.+.++. .+...++|+..+- .. ..||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4568999999999998888875 567999999999999999999988776 4677788876532 12 2799998
Q ss_pred ECCCCCCCCCCcchHHHHHHHhhcCC
Q 031325 119 MNPPFGTRKKGVDMDFLSMALKVASQ 144 (161)
Q Consensus 119 ~~~p~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
.||- +-...+++.+.+.++.
T Consensus 189 LDPy------Gs~s~FLDsAvqav~~ 208 (525)
T KOG1253|consen 189 LDPY------GSPSPFLDSAVQAVRD 208 (525)
T ss_pred cCCC------CCccHHHHHHHHHhhc
Confidence 8865 3344899999998873
No 299
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=96.01 E-value=0.062 Score=38.36 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=55.4
Q ss_pred EEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccc-----cCCCcccEEEECCCCCCCC
Q 031325 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL-----EWRGHVDTVVMNPPFGTRK 127 (161)
Q Consensus 53 lD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~i~~~~p~~~~~ 127 (161)
+..-+|+-.++..+.+. .++.+.+|+++.-.+..++++.... ++.+++.|..+- ++...=-+|++||||...
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~~-~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~- 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRDR-RVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK- 138 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TTS--EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST-
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccCC-ccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc-
Confidence 67788888888887764 5699999999999999888876532 789999998763 232256799999999864
Q ss_pred CCcchHHHHHHHhhcC---CcEEEEec
Q 031325 128 KGVDMDFLSMALKVAS---QAVYSLHK 151 (161)
Q Consensus 128 ~~~~~~~~~~~~~~~~---~~~~~~~~ 151 (161)
.+..+..+-+....+ .++|+++-
T Consensus 139 -~dy~~v~~~l~~a~kR~~~G~~~iWY 164 (245)
T PF04378_consen 139 -DDYQRVVDALAKALKRWPTGVYAIWY 164 (245)
T ss_dssp -THHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred -hHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 345455555555443 68888874
No 300
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.056 Score=39.51 Aligned_cols=57 Identities=26% Similarity=0.336 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (161)
+....... ...+++.|+|+.+|+|..++...+.+. .++|+|+++..++.+.+++...
T Consensus 211 l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 211 LIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 33333333 445789999999999999998888765 9999999999999999988754
No 301
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.89 E-value=0.083 Score=36.35 Aligned_cols=107 Identities=15% Similarity=0.079 Sum_probs=65.1
Q ss_pred cCCCCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHHH----HHHHHH--HhhcCC-ceEEEEcccccccCCCcc
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSL----ELASEN--AADLEL-DIDFVQCDIRNLEWRGHV 114 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~~----~~a~~~--~~~~~~-~~~~~~~d~~~~~~~~~~ 114 (161)
.+..++.+|+|+-.|.|+++.-++.. ....|++.-.++... +..+.+ .++... |.+.+-.+...+...+..
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~ 123 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL 123 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence 35568899999999999999999875 234777766544321 111111 111222 555666666555544466
Q ss_pred cEEEECCCCCCC-----CCCcchHHHHHHHhhcC-CcEEEEe
Q 031325 115 DTVVMNPPFGTR-----KKGVDMDFLSMALKVAS-QAVYSLH 150 (161)
Q Consensus 115 D~i~~~~p~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (161)
|+++.+.-|+.. ......++...+.+.|| +++|++.
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 777665555432 23334477888888898 5666665
No 302
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.75 E-value=0.023 Score=35.40 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=42.2
Q ss_pred CCcchHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC---C--cccEEEECCC
Q 031325 57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---G--HVDTVVMNPP 122 (161)
Q Consensus 57 ~G~G~~~~~la~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---~--~~D~i~~~~p 122 (161)
||.|.++..+++. +...++.+|.+++.++.++..- ..++.+|..+...- . +.+.+++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG------VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc------cccccccchhhhHHhhcCccccCEEEEccC
Confidence 6777788877763 3448999999999988765432 67999999875431 2 7888887555
No 303
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.51 E-value=0.29 Score=35.44 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=61.5
Q ss_pred CeEEEecCCcc--hHHHHHHHc--CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC--C-----Cccc--
Q 031325 50 KVVADFGCGCG--TLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW--R-----GHVD-- 115 (161)
Q Consensus 50 ~~vlD~g~G~G--~~~~~la~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--~-----~~~D-- 115 (161)
...||+|||-- ...=++++. +..+|+-+|.+|-.+..++..+....- ...++.+|+.+... . ..+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 57999999944 355556553 556999999999999999998877652 37899999987532 1 1233
Q ss_pred ---EEEECCCCCCCCC-CcchHHHHHHHhhcCCcEEEEe
Q 031325 116 ---TVVMNPPFGTRKK-GVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 116 ---~i~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+++...+++... ......+..+...+.++=|++.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~i 188 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAI 188 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEE
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEE
Confidence 5667777777754 5556888888888875444444
No 304
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=95.40 E-value=0.058 Score=34.36 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=45.5
Q ss_pred CCeEEEecCCcc-hHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC--CcccEEEE-CCCCC
Q 031325 49 NKVVADFGCGCG-TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR--GHVDTVVM-NPPFG 124 (161)
Q Consensus 49 ~~~vlD~g~G~G-~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~-~~p~~ 124 (161)
..+++|+|-|.= ..+..|.++|. .|+++|+++. +.. . .+.++..|+++.... ...|+|++ .||
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~-~--g~~~v~DDif~P~l~iY~~a~lIYSiRPP-- 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP-E--GVNFVVDDIFNPNLEIYEGADLIYSIRPP-- 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------------STTEE---SSS--HHHHTTEEEEEEES----
T ss_pred CCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc-c--CcceeeecccCCCHHHhcCCcEEEEeCCC--
Confidence 459999999976 46666777775 9999999997 111 2 478999999886543 27899996 666
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEE
Q 031325 125 TRKKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
.+.....+ ++.+...--+++.
T Consensus 81 ---~El~~~il-~lA~~v~adlii~ 101 (127)
T PF03686_consen 81 ---PELQPPIL-ELAKKVGADLIIR 101 (127)
T ss_dssp ---TTSHHHHH-HHHHHHT-EEEEE
T ss_pred ---hHHhHHHH-HHHHHhCCCEEEE
Confidence 44444444 4444444334433
No 305
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=95.37 E-value=0.044 Score=39.23 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=33.5
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHH
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELAS 88 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~ 88 (161)
++..+....+..+..+++|+.||+|..+..+... ...++.-|+++..+...+
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHH
Confidence 3344444434336789999999999999888764 459999999998876666
No 306
>PRK11524 putative methyltransferase; Provisional
Probab=95.37 E-value=0.029 Score=41.00 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=34.8
Q ss_pred ceEEEEccccccc--C-CCcccEEEECCCCCCCCC----------Cc----chHHHHHHHhhcCCcEEE
Q 031325 97 DIDFVQCDIRNLE--W-RGHVDTVVMNPPFGTRKK----------GV----DMDFLSMALKVASQAVYS 148 (161)
Q Consensus 97 ~~~~~~~d~~~~~--~-~~~~D~i~~~~p~~~~~~----------~~----~~~~~~~~~~~~~~~~~~ 148 (161)
+..++++|+.+.. . ..++|+|++||||..... .. ...++..+.++|++.+.+
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i 76 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTM 76 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 3578899998842 2 238999999999964211 00 136888999999843333
No 307
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.26 E-value=0.028 Score=40.69 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=34.4
Q ss_pred CCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHH
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~ 85 (161)
...+++|||+|||+|--.+.....+...++..|.|...++
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 3578999999999999999888877679999999988773
No 308
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.014 Score=38.77 Aligned_cols=104 Identities=10% Similarity=0.031 Sum_probs=58.7
Q ss_pred HHHhhcCCCCCCeEEEecCCcchH-HHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC----ceEEEEccccccc--C
Q 031325 39 TAENSFGDVSNKVVADFGCGCGTL-GAAATLL-GADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLE--W 110 (161)
Q Consensus 39 ~~~~~~~~~~~~~vlD~g~G~G~~-~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~--~ 110 (161)
.++.......+.+|+++|.|--.+ ++.+|.. ....|..+|-++..++-.++....+.. ++....-+...-. .
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence 333333334678999999995544 4444443 456999999999999888776544321 2222222221111 1
Q ss_pred CC-cccEEEECCCCCCCCCCcchHHHHHHHhhcCC
Q 031325 111 RG-HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ 144 (161)
Q Consensus 111 ~~-~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
.. +||+|++.-.... .+-.....+.++..+++
T Consensus 100 eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p 132 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFF--DEHHESLVDTIKSLLRP 132 (201)
T ss_pred hhCcccEEEeccchhH--HHHHHHHHHHHHHHhCc
Confidence 12 8999998543211 12223555666666663
No 309
>PRK13699 putative methylase; Provisional
Probab=95.01 E-value=0.03 Score=39.59 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=33.7
Q ss_pred eEEEEcccccc--cCC-CcccEEEECCCCCCC--C-------CCc----chHHHHHHHhhcCCcEEEE
Q 031325 98 IDFVQCDIRNL--EWR-GHVDTVVMNPPFGTR--K-------KGV----DMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 98 ~~~~~~d~~~~--~~~-~~~D~i~~~~p~~~~--~-------~~~----~~~~~~~~~~~~~~~~~~~ 149 (161)
++++++|+.+. ... +++|+|++||||... . ... ...++.++.++++++..++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 36788898774 222 389999999999631 0 011 1356788889998544333
No 310
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.94 E-value=0.51 Score=29.59 Aligned_cols=86 Identities=21% Similarity=0.164 Sum_probs=57.4
Q ss_pred CeEEEecCCcc-hHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC--cccEEEECCCCCCC
Q 031325 50 KVVADFGCGCG-TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG--HVDTVVMNPPFGTR 126 (161)
Q Consensus 50 ~~vlD~g~G~G-~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~D~i~~~~p~~~~ 126 (161)
.+|+++|.|.= ..+..++++|+ .++++|+++. +.. . .+.++..|+++....- ..|+|++-=|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~-~--g~~~v~DDitnP~~~iY~~A~lIYSiRp---- 79 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP-E--GLRFVVDDITNPNISIYEGADLIYSIRP---- 79 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc-c--cceEEEccCCCccHHHhhCccceeecCC----
Confidence 48999998865 36667778876 9999999986 111 2 4789999998865543 7888886322
Q ss_pred CCCcchHHHHHHHhhcCCcEEEEec
Q 031325 127 KKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
..+....+-++.+..+--+|+..-
T Consensus 80 -ppEl~~~ildva~aVga~l~I~pL 103 (129)
T COG1255 80 -PPELQSAILDVAKAVGAPLYIKPL 103 (129)
T ss_pred -CHHHHHHHHHHHHhhCCCEEEEec
Confidence 133335555555555545555543
No 311
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.92 E-value=0.15 Score=36.33 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=59.9
Q ss_pred CCCCeEEEecCCcchHHHHHHHc--CCCeEEEEeCChHH----HHHHHHHHhhcCCceEEEEcccccccCCC----cccE
Q 031325 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDS----LELASENAADLELDIDFVQCDIRNLEWRG----HVDT 116 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~--~~~~v~~~D~~~~~----~~~a~~~~~~~~~~~~~~~~d~~~~~~~~----~~D~ 116 (161)
.++.+||=+|+++|+.....+.. +..-|+++|.++.. +.+|+++ .|+..+..|+....... ..|+
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCCchheeeeeeeEEE
Confidence 47889999999999887777764 34589999988643 4444332 27888888987655433 7899
Q ss_pred EEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 117 VVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 117 i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
|++|-+ ...+..-+.-++.-.|+
T Consensus 230 IFaDva----qpdq~RivaLNA~~FLk 252 (317)
T KOG1596|consen 230 IFADVA----QPDQARIVALNAQYFLK 252 (317)
T ss_pred EeccCC----Cchhhhhhhhhhhhhhc
Confidence 998766 33333333344455566
No 312
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.85 E-value=0.023 Score=44.01 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=65.7
Q ss_pred CCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEccccccc----C---CC-cccEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE----W---RG-HVDTV 117 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~---~~-~~D~i 117 (161)
.+..++-+|-|.|.+...+... +...+++++++|.+++.|+++.....- +..++..|..+.. . .+ .||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 3457899999999988887653 556999999999999999998764432 3444444443321 1 22 89999
Q ss_pred EEC---CCCCCC-----CCCcchHHHHHHHhhcC-CcEEEEe
Q 031325 118 VMN---PPFGTR-----KKGVDMDFLSMALKVAS-QAVYSLH 150 (161)
Q Consensus 118 ~~~---~p~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (161)
+.+ ++ .+. ..-....++...+..++ ++.+++.
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 874 33 222 22233356667777776 4555443
No 313
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.67 E-value=0.67 Score=34.81 Aligned_cols=85 Identities=27% Similarity=0.286 Sum_probs=54.5
Q ss_pred cCCCCCCeEEEecCC-cchHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcc-cccccCC-CcccEEEE
Q 031325 44 FGDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCD-IRNLEWR-GHVDTVVM 119 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G-~G~~~~~la~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d-~~~~~~~-~~~D~i~~ 119 (161)
....++++|+=.|+| .|.+++.+|+ .+ .+|+++|.+++..+.|++.-.. .++... ......- +.||+|+.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd-----~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD-----HVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc-----EEEEcCCchhhHHhHhhCcEEEE
Confidence 345678899999888 3357777887 46 5999999999999998775332 222222 1111111 14999987
Q ss_pred CCCCCCCCCCcchHHHHHHHhhcC
Q 031325 120 NPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 120 ~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
--+ ...++...+.++
T Consensus 236 tv~---------~~~~~~~l~~l~ 250 (339)
T COG1064 236 TVG---------PATLEPSLKALR 250 (339)
T ss_pred CCC---------hhhHHHHHHHHh
Confidence 333 255556666666
No 314
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.58 E-value=0.11 Score=38.46 Aligned_cols=47 Identities=30% Similarity=0.382 Sum_probs=37.9
Q ss_pred hcCCCCCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 031325 43 SFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 43 ~~~~~~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~ 89 (161)
......+.++|-+|+|+ |-.+...|+. |..+|+.+|+++..++.|++
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34456789999999996 4455555654 88899999999999999988
No 315
>PTZ00357 methyltransferase; Provisional
Probab=94.56 E-value=0.45 Score=39.14 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=61.8
Q ss_pred eEEEecCCcchHHHHHHH----cCC-CeEEEEeCChHHHHHHHHHHh---hc-------CCceEEEEcccccccCCC---
Q 031325 51 VVADFGCGCGTLGAAATL----LGA-DQVIAIDIDSDSLELASENAA---DL-------ELDIDFVQCDIRNLEWRG--- 112 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~----~~~-~~v~~~D~~~~~~~~a~~~~~---~~-------~~~~~~~~~d~~~~~~~~--- 112 (161)
.|+-+|+|-|-+.....+ .+. -+++++|.|+..+.....+.. .+ |-.++++..|...+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 689999999965544332 132 389999999775544444322 22 124899999998874321
Q ss_pred ---------cccEEEEC--CCCCCCCCCcchHHHHHHHhhcC
Q 031325 113 ---------HVDTVVMN--PPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 113 ---------~~D~i~~~--~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
++|+|+.- ..|+ ..++.++.|..+.+.|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFG--DNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLG--DNELSPECLEAFHAQLE 822 (1072)
T ss_pred cccccccccccceehHhhhcccc--cccCCHHHHHHHHHhhh
Confidence 58999873 4455 56777788888888775
No 316
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.48 E-value=0.35 Score=35.48 Aligned_cols=74 Identities=27% Similarity=0.364 Sum_probs=57.6
Q ss_pred CCCCeEEEecCCcc---hHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 47 VSNKVVADFGCGCG---TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 47 ~~~~~vlD~g~G~G---~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
..+..||=-|.|+| .++.++|+++. +++.+|+++...+...+.++..| .+.....|+.+...- +
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 35778998898888 36677788877 99999999999988888887766 788888898775431 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.|.-
T Consensus 114 ~V~ILVNNAG 123 (300)
T KOG1201|consen 114 DVDILVNNAG 123 (300)
T ss_pred CceEEEeccc
Confidence 6888888744
No 317
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.42 E-value=0.098 Score=42.37 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC---C--cccEEEECCCCCCCCC
Q 031325 57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---G--HVDTVVMNPPFGTRKK 128 (161)
Q Consensus 57 ~G~G~~~~~la~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---~--~~D~i~~~~p~~~~~~ 128 (161)
||.|.++..+++. ...+++.+|.|++.++.+++ .| ..++.||..+...- + +.|++++..+ +.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g--~~v~~GDat~~~~L~~agi~~A~~vv~~~~----d~ 475 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG--YKVYYGDATQLELLRAAGAEKAEAIVITCN----EP 475 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC--CeEEEeeCCCHHHHHhcCCccCCEEEEEeC----CH
Confidence 5566666666542 23399999999999988764 23 67899999885431 2 7888887444 33
Q ss_pred CcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 129 GVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
.........+.+.. +...++....+
T Consensus 476 ~~n~~i~~~~r~~~-p~~~IiaRa~~ 500 (601)
T PRK03659 476 EDTMKIVELCQQHF-PHLHILARARG 500 (601)
T ss_pred HHHHHHHHHHHHHC-CCCeEEEEeCC
Confidence 33333334433333 34455544333
No 318
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=94.27 E-value=0.091 Score=32.47 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=22.1
Q ss_pred cccEEEECCCCCCCCC------------CcchHHHHHHHhhcCC
Q 031325 113 HVDTVVMNPPFGTRKK------------GVDMDFLSMALKVASQ 144 (161)
Q Consensus 113 ~~D~i~~~~p~~~~~~------------~~~~~~~~~~~~~~~~ 144 (161)
.||+|+.||||..... ..+..+++...+++.+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll~G 45 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLLNG 45 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHhCC
Confidence 5999999999976531 2223367777777743
No 319
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.07 E-value=0.23 Score=35.91 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCC-cccEEEECCC
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG-HVDTVVMNPP 122 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~i~~~~p 122 (161)
.++...+|+|+-+|+.+..+.+++- .|+++|-.+- .+++-..| .++.+..|-.++.+.. ..|..+||..
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~m-----a~sL~dtg-~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPM-----AQSLMDTG-QVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchh-----hhhhhccc-ceeeeeccCcccccCCCCCceEEeehh
Confidence 4688999999999999999999876 9999996442 23344444 6788889998887744 8899999865
No 320
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.98 E-value=0.34 Score=32.53 Aligned_cols=99 Identities=19% Similarity=0.240 Sum_probs=54.6
Q ss_pred ecCCcchHHHHHHHc-C-CCeEEEEeCC--hHHHHH---HHHHHhhcCC-ceE-EEEcccccccCC-----CcccEEEEC
Q 031325 55 FGCGCGTLGAAATLL-G-ADQVIAIDID--SDSLEL---ASENAADLEL-DID-FVQCDIRNLEWR-----GHVDTVVMN 120 (161)
Q Consensus 55 ~g~G~G~~~~~la~~-~-~~~v~~~D~~--~~~~~~---a~~~~~~~~~-~~~-~~~~d~~~~~~~-----~~~D~i~~~ 120 (161)
+|=|.=+++..+++. + ...++++-.+ ++..+. +..++....- .+. ....|++++... ..||.|++|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 455555677777765 3 4466665554 333222 2234433211 333 344577776442 289999999
Q ss_pred CCCCCC-----------CCCcchHHHHHHHhhcC--CcEEEEeccC
Q 031325 121 PPFGTR-----------KKGVDMDFLSMALKVAS--QAVYSLHKTS 153 (161)
Q Consensus 121 ~p~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 153 (161)
.|..-. ...+...++..+..+++ +.+.+....+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 997541 12344466777788876 4555554433
No 321
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.82 E-value=0.073 Score=42.69 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCCCCeEEEecCCcchHHHHHHHc-C-CCeEEEEeCCh
Q 031325 46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDS 81 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~~~~~la~~-~-~~~v~~~D~~~ 81 (161)
..++..|||+||-+|++..-+++. + ..-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 346789999999999999988875 3 34899999865
No 322
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=2 Score=30.97 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=70.0
Q ss_pred CCCCeEEEecCCcchHHHHHHH----cC-CCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccccCC--C-ccc-
Q 031325 47 VSNKVVADFGCGCGTLGAAATL----LG-ADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR--G-HVD- 115 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~----~~-~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~--~-~~D- 115 (161)
..+..++|+|+|+..-+..+.. ++ ...++.+|++...++...+.+.+. ++.+.-+++|....... . .--
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 3467999999999976666543 32 348999999999887665555442 33677778877542211 1 222
Q ss_pred EEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 116 TVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 116 ~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.++.....+.++.+....++..+-..++++=|++.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 33445667777777777889998888886555554
No 323
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.53 E-value=1.6 Score=33.32 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=60.2
Q ss_pred CCCeEEEecCCcchHH----HHHHHcC----CCeEEEEeC----ChHHHHHHHHHHh----hcCCceEEEEc---ccccc
Q 031325 48 SNKVVADFGCGCGTLG----AAATLLG----ADQVIAIDI----DSDSLELASENAA----DLELDIDFVQC---DIRNL 108 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~----~~la~~~----~~~v~~~D~----~~~~~~~a~~~~~----~~~~~~~~~~~---d~~~~ 108 (161)
+.-.|+|+|.|.|..- ..++.+. .-++||++. +...++.+.+++. ..|+..+|... +..++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 4558999999999644 4445442 238999998 6777766665544 34655555442 33333
Q ss_pred cCCC----cccEEEECCCC--CCCC--C----CcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 109 EWRG----HVDTVVMNPPF--GTRK--K----GVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 109 ~~~~----~~D~i~~~~p~--~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
.... .-++++.|.+| ++.. . .....++..+.++.+.++.++..+.+
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ea~ 247 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQEAD 247 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEeecCC
Confidence 2211 33456666665 4332 1 11224666666555666666655443
No 324
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=93.52 E-value=0.52 Score=34.06 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc------CCCeEEEEeCChHHHHHHHHHHhhcC--CceEEEEccccc
Q 031325 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL------GADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRN 107 (161)
Q Consensus 36 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~------~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~ 107 (161)
++..+.......++..++|+|||.|.++.++++. +...++.||-.....+.=+ .+.... ..+.=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeec
Confidence 3344444333346678999999999999999875 2348889997654443222 222222 245556666666
Q ss_pred ccCC
Q 031325 108 LEWR 111 (161)
Q Consensus 108 ~~~~ 111 (161)
+...
T Consensus 85 l~l~ 88 (259)
T PF05206_consen 85 LDLS 88 (259)
T ss_pred cchh
Confidence 6543
No 325
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.34 E-value=2.1 Score=31.47 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=44.4
Q ss_pred CCCCeEEEecCCcchHHH--HHHHcCCCeEEEEeCCh---HHHHHHHHHHhhcCCceEEEEcccccccC--C--CcccEE
Q 031325 47 VSNKVVADFGCGCGTLGA--AATLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQCDIRNLEW--R--GHVDTV 117 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~--~la~~~~~~v~~~D~~~---~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--~--~~~D~i 117 (161)
.++++++=+|+|.-..++ .+++.|..+++.++.++ +..+...+.+...+..+.+...|..+... . ...|++
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence 356789999997222222 23455776799999886 33333333332222123344445443211 1 157999
Q ss_pred EECCCCCCCC
Q 031325 118 VMNPPFGTRK 127 (161)
Q Consensus 118 ~~~~p~~~~~ 127 (161)
+.+-|-+..+
T Consensus 204 INaTp~Gm~~ 213 (289)
T PRK12548 204 VNATLVGMKP 213 (289)
T ss_pred EEeCCCCCCC
Confidence 9988876643
No 326
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.15 E-value=1.3 Score=30.77 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCC-------------------hHHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDID-------------------SDSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~-------------------~~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
...+|+=+|||. |. .+..|+..|..+++.+|.+ ....+.+.+.+..... +++.....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 567899999994 43 5555677788899999977 2334455555554332 44444444
Q ss_pred cccccC---CCcccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 105 IRNLEW---RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 105 ~~~~~~---~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
+..... ...+|+|+.... ......++.+..+..+
T Consensus 100 i~~~~~~~~~~~~D~Vi~~~d-----~~~~r~~l~~~~~~~~ 136 (202)
T TIGR02356 100 VTAENLELLINNVDLVLDCTD-----NFATRYLINDACVALG 136 (202)
T ss_pred CCHHHHHHHHhCCCEEEECCC-----CHHHHHHHHHHHHHcC
Confidence 432111 127999987322 1122345555555544
No 327
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.12 E-value=0.33 Score=39.85 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=59.4
Q ss_pred CCCeEEEecCCcchHHHHHHH-c-------C-----CCeEEEEeCChH---HHH-----------HHHHHHhh-----cC
Q 031325 48 SNKVVADFGCGCGTLGAAATL-L-------G-----ADQVIAIDIDSD---SLE-----------LASENAAD-----LE 95 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~-~-------~-----~~~v~~~D~~~~---~~~-----------~a~~~~~~-----~~ 95 (161)
+.-+|+|+|-|+|.......+ . . .-+++++|..|- .+. .+++.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999986665542 1 1 138999997652 222 12222211 11
Q ss_pred ----------CceEEEEcccccccCCC--cccEEEECCCCCCC-CCCcchHHHHHHHhhcCCcEEEE
Q 031325 96 ----------LDIDFVQCDIRNLEWRG--HVDTVVMNPPFGTR-KKGVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 96 ----------~~~~~~~~d~~~~~~~~--~~D~i~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
+.+++..+|+.+....- .+|+++.|+.--.. +..=..+++..+.+.++++..+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 14567888887754322 69999998531111 12223378888888887544444
No 328
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.88 E-value=0.53 Score=36.00 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=36.0
Q ss_pred CCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHh
Q 031325 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~ 92 (161)
...++++||-|++|.-...-.+.+ +..+|++||+||....+.+-++.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence 445788999998776666666655 45699999999999888776554
No 329
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.73 E-value=0.25 Score=40.25 Aligned_cols=88 Identities=13% Similarity=0.240 Sum_probs=52.6
Q ss_pred CeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC---CC--cccEEEEC
Q 031325 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RG--HVDTVVMN 120 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~--~~D~i~~~ 120 (161)
.+++=+||| +++..+++ .+. .++.+|.|++.++.+++ .| ..++.||..+... .+ +.|++++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~----~g--~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK----FG--MKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh----cC--CeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 456666665 44444443 344 89999999999998765 23 6789999988643 12 78888873
Q ss_pred CCCCCCCCCcchHHHHHHHhhcCCcEEEEec
Q 031325 121 PPFGTRKKGVDMDFLSMALKVASQAVYSLHK 151 (161)
Q Consensus 121 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (161)
.. +.+........+.+..+ .+.++..
T Consensus 472 ~~----d~~~n~~i~~~ar~~~p-~~~iiaR 497 (621)
T PRK03562 472 ID----DPQTSLQLVELVKEHFP-HLQIIAR 497 (621)
T ss_pred eC----CHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 33 23333344444444333 3344443
No 330
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.62 E-value=2.1 Score=28.92 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=42.0
Q ss_pred eEEEecCCc-ch-HHHHHHHcCCCeEEEEeCCh------------------HHHHHHHHHHhhcCC--ceEEEEcccccc
Q 031325 51 VVADFGCGC-GT-LGAAATLLGADQVIAIDIDS------------------DSLELASENAADLEL--DIDFVQCDIRNL 108 (161)
Q Consensus 51 ~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~~------------------~~~~~a~~~~~~~~~--~~~~~~~d~~~~ 108 (161)
+|+-+|||. |. .+..+++.|..+++.+|.+. ...+.+++++++... ++..+...+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 467788883 44 55556777888899999875 234445555555433 454444444332
Q ss_pred cC---CCcccEEEEC
Q 031325 109 EW---RGHVDTVVMN 120 (161)
Q Consensus 109 ~~---~~~~D~i~~~ 120 (161)
.. -..+|+|+..
T Consensus 81 ~~~~~l~~~DlVi~~ 95 (174)
T cd01487 81 NLEGLFGDCDIVVEA 95 (174)
T ss_pred hHHHHhcCCCEEEEC
Confidence 11 1279999963
No 331
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.55 E-value=1.5 Score=28.66 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=48.4
Q ss_pred eEEEecCCcchHHHHHH----HcCCCeEEEEeCC--hHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Cc
Q 031325 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDID--SDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~ 113 (161)
+++=.|+++ .++..++ +.+...++.+.-+ ....+.....+...+.++.+...|+.+...- ..
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455566554 4555544 4456688888888 5666666666665566789999998765321 17
Q ss_pred ccEEEECCCCCC
Q 031325 114 VDTVVMNPPFGT 125 (161)
Q Consensus 114 ~D~i~~~~p~~~ 125 (161)
.|+++.+.....
T Consensus 81 ld~li~~ag~~~ 92 (167)
T PF00106_consen 81 LDILINNAGIFS 92 (167)
T ss_dssp ESEEEEECSCTT
T ss_pred cccccccccccc
Confidence 899998766443
No 332
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.36 E-value=1.7 Score=30.53 Aligned_cols=73 Identities=23% Similarity=0.324 Sum_probs=47.7
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++.+++-.|+ +|.++..++ +.|. +++.++.++..++.+.+.+...+.++.++..|+.+.... .
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678887775 444455444 3455 899999998777666665555444677888887653211 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 4799998764
No 333
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.29 E-value=0.57 Score=34.85 Aligned_cols=47 Identities=34% Similarity=0.385 Sum_probs=35.7
Q ss_pred cCCCCCCeEEEecCCcchHHHHHH-H-cCCCeEEEEeCChHHHHHHHHH
Q 031325 44 FGDVSNKVVADFGCGCGTLGAAAT-L-LGADQVIAIDIDSDSLELASEN 90 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~~~~~la-~-~~~~~v~~~D~~~~~~~~a~~~ 90 (161)
....++.++.-+|+|.=+++...- + +|..+++|+|+|++..+.|++.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 344578888888888766655543 3 3788999999999999988763
No 334
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.04 E-value=1.4 Score=28.32 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=48.2
Q ss_pred cCCCCCCeEEEecCCcch--HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-CcccEEEEC
Q 031325 44 FGDVSNKVVADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-GHVDTVVMN 120 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~--~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~i~~~ 120 (161)
++..++.+++=+|+|.-. ....++..+..+++.+.-+.+..+...+.+.. .++.+. +..+.... ..+|+|+..
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~--~~~~~~--~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG--VNIEAI--PLEDLEEALQEADIVINA 82 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG--CSEEEE--EGGGHCHHHHTESEEEE-
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc--ccccee--eHHHHHHHHhhCCeEEEe
Confidence 345578999999997553 33334556887899999887766555444422 123333 33333311 179999998
Q ss_pred CCCCCC
Q 031325 121 PPFGTR 126 (161)
Q Consensus 121 ~p~~~~ 126 (161)
.|-.+.
T Consensus 83 T~~~~~ 88 (135)
T PF01488_consen 83 TPSGMP 88 (135)
T ss_dssp SSTTST
T ss_pred cCCCCc
Confidence 776543
No 335
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=92.01 E-value=0.27 Score=35.63 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=21.6
Q ss_pred ceEEEEcccccccCC-CcccEEEECCCCC
Q 031325 97 DIDFVQCDIRNLEWR-GHVDTVVMNPPFG 124 (161)
Q Consensus 97 ~~~~~~~d~~~~~~~-~~~D~i~~~~p~~ 124 (161)
++++.++|..+.... ..-|+|++||||.
T Consensus 155 ~v~i~~~Df~~~i~~~~~~dfvYlDPPY~ 183 (266)
T TIGR00571 155 NTTFLCGSFEKILAMVDDDSFVYCDPPYL 183 (266)
T ss_pred CCEEEECCHHHHHhhcCCCCEEEECCCCC
Confidence 578999999886432 2557999999994
No 336
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.00 E-value=3.1 Score=29.20 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=52.4
Q ss_pred cCCCCCCeEEEecCCcch--HHHHH--HHc-CCCeEEEEeCChHHHHHHHHHHhhcCC-c-eEEEEccccc-ccCC-Ccc
Q 031325 44 FGDVSNKVVADFGCGCGT--LGAAA--TLL-GADQVIAIDIDSDSLELASENAADLEL-D-IDFVQCDIRN-LEWR-GHV 114 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~G~--~~~~l--a~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~-~~~~-~~~ 114 (161)
......+.+++.+|+.|. .++.| |.+ -..++++|-.++..+...++.+...+. + ++|+.++..+ .... ...
T Consensus 37 AAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~i 116 (218)
T PF07279_consen 37 AAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGI 116 (218)
T ss_pred hccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCC
Confidence 344567789999766442 34444 333 345899999999988888888888777 3 5888888543 3322 278
Q ss_pred cEEEEC
Q 031325 115 DTVVMN 120 (161)
Q Consensus 115 D~i~~~ 120 (161)
|.++.|
T Consensus 117 DF~vVD 122 (218)
T PF07279_consen 117 DFVVVD 122 (218)
T ss_pred CEEEEe
Confidence 888874
No 337
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.97 E-value=2.6 Score=31.77 Aligned_cols=72 Identities=24% Similarity=0.223 Sum_probs=46.2
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCCh---------------------HHHHHHHHHHhhcCC--ceEEEE
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDS---------------------DSLELASENAADLEL--DIDFVQ 102 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~~---------------------~~~~~a~~~~~~~~~--~~~~~~ 102 (161)
...+|+=+|||. |. .+..|+..|..+++.+|-+. ..++.+++.+++... ++..+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 567899999984 33 55556677888999999874 234555566655433 566666
Q ss_pred cccccccCC---CcccEEEE
Q 031325 103 CDIRNLEWR---GHVDTVVM 119 (161)
Q Consensus 103 ~d~~~~~~~---~~~D~i~~ 119 (161)
.++...... ..+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIID 122 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEE
Confidence 665422111 26999986
No 338
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.90 E-value=2.6 Score=30.82 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=48.1
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-----------CC
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----------RG 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 112 (161)
.+.+++=.|++. +++..++ +.|. +|+.++.+++.++...+.+...+.++.++.+|+.+... .+
T Consensus 39 ~~k~vlItGasg-gIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASS-GIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456777777654 4555544 4454 89999999877766655554444457788888876432 11
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+.-.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 57999987543
No 339
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.88 E-value=2.1 Score=30.40 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=50.7
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
+++++|=.| |+|.++..+++ .|. +|+.++.++...+.....+...+.++.++.+|+.+...- .
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 567788887 55666666654 355 899999988777766666655444677889998864321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|.++.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 57999987653
No 340
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.86 E-value=0.53 Score=37.85 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=42.4
Q ss_pred CeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC---CC--cccEEEEC
Q 031325 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RG--HVDTVVMN 120 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~--~~D~i~~~ 120 (161)
.+++=+||| ..+..+++ .+. .++.+|.|++.++.+++. ....+.+|..+... .+ ++|.+++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 345555554 45555554 344 899999999988877642 37899999987532 12 78877764
Q ss_pred CC
Q 031325 121 PP 122 (161)
Q Consensus 121 ~p 122 (161)
-+
T Consensus 489 ~~ 490 (558)
T PRK10669 489 IP 490 (558)
T ss_pred cC
Confidence 33
No 341
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.76 E-value=0.56 Score=35.39 Aligned_cols=84 Identities=30% Similarity=0.306 Sum_probs=54.1
Q ss_pred CCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccc--------cccCCCcccEE
Q 031325 48 SNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR--------NLEWRGHVDTV 117 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~--------~~~~~~~~D~i 117 (161)
++.+++=+|||+ |-+++.+++. |..+|+.+|.++..+++|++.... ........ .......+|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-----DVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-----eEeecCccccHHHHHHHHhCCCCCCEE
Confidence 444899999996 5555666665 778999999999999999885532 11111111 11111268998
Q ss_pred EECCCCCCCCCCcchHHHHHHHhhcCC
Q 031325 118 VMNPPFGTRKKGVDMDFLSMALKVASQ 144 (161)
Q Consensus 118 ~~~~p~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
+=..- ....++.+.+..++
T Consensus 243 ie~~G--------~~~~~~~ai~~~r~ 261 (350)
T COG1063 243 IEAVG--------SPPALDQALEALRP 261 (350)
T ss_pred EECCC--------CHHHHHHHHHHhcC
Confidence 84211 33577777888764
No 342
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.19 E-value=0.71 Score=35.15 Aligned_cols=46 Identities=39% Similarity=0.584 Sum_probs=36.8
Q ss_pred CCCCCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHHH
Q 031325 45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~ 90 (161)
...++.+|+..|||. |..++.+++. +..++++++.++...+.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 445678999999887 7788888876 544799999999998888765
No 343
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.15 E-value=3.3 Score=28.97 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=45.0
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCCh------------------HHHHHHHHHHhhcCC--ceEEEEccc
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDS------------------DSLELASENAADLEL--DIDFVQCDI 105 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~~------------------~~~~~a~~~~~~~~~--~~~~~~~d~ 105 (161)
...+|+=+|||. |. .+..|+..|..+++.+|.+. ..++.+++++.+.+. +++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 567899999984 43 55666777888899999872 334555566655433 444444444
Q ss_pred ccccC---CCcccEEEE
Q 031325 106 RNLEW---RGHVDTVVM 119 (161)
Q Consensus 106 ~~~~~---~~~~D~i~~ 119 (161)
..... ...+|+|+.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 33211 126899995
No 344
>PRK14851 hypothetical protein; Provisional
Probab=91.12 E-value=1.1 Score=37.10 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=46.2
Q ss_pred CCCeEEEecCC-cch-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G-~G~-~~~~la~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
.+.+|+-+||| .|+ .+..|+..|..+++.+|.+. ..++.+++.+.+.+. +++.+...
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 56899999999 665 55556777888888888542 123445555554332 66677666
Q ss_pred cccccCC---CcccEEEE
Q 031325 105 IRNLEWR---GHVDTVVM 119 (161)
Q Consensus 105 ~~~~~~~---~~~D~i~~ 119 (161)
+...... ..+|+|+.
T Consensus 122 i~~~n~~~~l~~~DvVid 139 (679)
T PRK14851 122 INADNMDAFLDGVDVVLD 139 (679)
T ss_pred CChHHHHHHHhCCCEEEE
Confidence 6542221 27999985
No 345
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.03 E-value=2.4 Score=30.62 Aligned_cols=74 Identities=31% Similarity=0.407 Sum_probs=49.0
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.++++|-.|+++| ++..++ +.|. +|+.++.++..++...+.+...+.++.++..|+.+...- .
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5677887776544 444444 4455 899999988777666555554454677888898764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.|...
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 47999988754
No 346
>PRK05867 short chain dehydrogenase; Provisional
Probab=90.85 E-value=2.4 Score=30.02 Aligned_cols=75 Identities=24% Similarity=0.230 Sum_probs=49.5
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Cc
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~ 113 (161)
.++++|-.|+++|. ++..+++.|. +|+.++.++..++.....+...+-++.++..|+.+.... ..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56788888876552 3333444565 899999988877766666554444567788888764321 26
Q ss_pred ccEEEECCCC
Q 031325 114 VDTVVMNPPF 123 (161)
Q Consensus 114 ~D~i~~~~p~ 123 (161)
.|+++.+...
T Consensus 87 id~lv~~ag~ 96 (253)
T PRK05867 87 IDIAVCNAGI 96 (253)
T ss_pred CCEEEECCCC
Confidence 7999987654
No 347
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.66 E-value=1.1 Score=35.42 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHHhhcC--CCC--CCeEEEecCCcchHHHHHHHcCCC--eEEEEeCChHHHHHHHHHHhhcCCceE
Q 031325 26 YPTGPHIASRMLYTAENSFG--DVS--NKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSLELASENAADLELDID 99 (161)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~--~~~--~~~vlD~g~G~G~~~~~la~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~ 99 (161)
|..+.......+........ ... -..|+|+.+|.|+++.+|...+.+ +|+-+ ..+..+... -..|+ +-
T Consensus 339 F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vI----ydRGL-IG 412 (506)
T PF03141_consen 339 FKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVI----YDRGL-IG 412 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhh----hhccc-ch
Confidence 33344445555555543322 222 246999999999999999887543 22222 223333321 22232 11
Q ss_pred EEEcccccccCCC-cccEEEECCCCCCC-CCCcchHHHHHHHhhcCCcEEEEecc
Q 031325 100 FVQCDIRNLEWRG-HVDTVVMNPPFGTR-KKGVDMDFLSMALKVASQAVYSLHKT 152 (161)
Q Consensus 100 ~~~~d~~~~~~~~-~~D~i~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (161)
..+.=++.++... +||++=++.-|... ..-.-..++-++-|+|+++++++...
T Consensus 413 ~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 413 VYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 2222223344433 89999999888765 33444477888999999888877644
No 348
>PRK07791 short chain dehydrogenase; Provisional
Probab=90.49 E-value=4.4 Score=29.49 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=46.0
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCCh---------HHHHHHHHHHhhcCCceEEEEcccccccC-----
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---------DSLELASENAADLELDIDFVQCDIRNLEW----- 110 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~---------~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----- 110 (161)
+++++|-.|++.|. ++..+++.|. +++.++.+. ..++.+...+...+.++.++..|+.+...
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 56788888876652 3333445565 788777664 44444444444444466778888876422
Q ss_pred ------CCcccEEEECCCC
Q 031325 111 ------RGHVDTVVMNPPF 123 (161)
Q Consensus 111 ------~~~~D~i~~~~p~ 123 (161)
....|+++.|.-.
T Consensus 84 ~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 1257999987654
No 349
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.48 E-value=3.1 Score=29.77 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=48.2
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEcccccccCC----------Cc
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWR----------GH 113 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~----------~~ 113 (161)
+++++|-.|++.|. ++..+++.|. +|+.++.++..++.+.+.+... +.++.++.+|+.+...- ..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 56778877766552 3344455565 8999999988777666555432 33677888888765321 14
Q ss_pred ccEEEECCC
Q 031325 114 VDTVVMNPP 122 (161)
Q Consensus 114 ~D~i~~~~p 122 (161)
.|+++.+.-
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 788887754
No 350
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=90.45 E-value=3.2 Score=29.34 Aligned_cols=75 Identities=23% Similarity=0.199 Sum_probs=49.1
Q ss_pred CCCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------
Q 031325 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 111 (161)
.++++++-.|++ |.++..++ +.|. +|+.++.+++.++.....++..+.++.++.+|+.+...-
T Consensus 9 ~~~k~ilItGas-~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 9 LAGQVALVTGSA-RGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 367788877754 44455544 4455 899999988776666555555454677888888764321
Q ss_pred CcccEEEECCCC
Q 031325 112 GHVDTVVMNPPF 123 (161)
Q Consensus 112 ~~~D~i~~~~p~ 123 (161)
...|.++.+...
T Consensus 87 ~~id~vi~~ag~ 98 (256)
T PRK06124 87 GRLDILVNNVGA 98 (256)
T ss_pred CCCCEEEECCCC
Confidence 146888887554
No 351
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.45 E-value=3.7 Score=31.01 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=55.4
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCCh---------------------HHHHHHHHHHhhcCC--ceEEEE
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDS---------------------DSLELASENAADLEL--DIDFVQ 102 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~~---------------------~~~~~a~~~~~~~~~--~~~~~~ 102 (161)
...+|+=+|||. |. .+..|+..|..+++.+|-+. ...+.+++++++.+. ++....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 567899999983 33 55556777888999999863 234445555554432 555665
Q ss_pred cccccccC---CCcccEEEECCCCCCCCCCcchHHHHHHHhhcC-CcEEE
Q 031325 103 CDIRNLEW---RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYS 148 (161)
Q Consensus 103 ~d~~~~~~---~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (161)
.++..... ...+|+|+...- ......++.......+ +.++.
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~~D-----n~~~r~~ln~~~~~~~iP~i~~ 147 (339)
T PRK07688 103 QDVTAEELEELVTGVDLIIDATD-----NFETRFIVNDAAQKYGIPWIYG 147 (339)
T ss_pred ccCCHHHHHHHHcCCCEEEEcCC-----CHHHHHHHHHHHHHhCCCEEEE
Confidence 55543211 126899986322 1122345555555443 54443
No 352
>PRK06172 short chain dehydrogenase; Provisional
Probab=90.44 E-value=3.1 Score=29.40 Aligned_cols=74 Identities=26% Similarity=0.262 Sum_probs=49.1
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++-.|++. .++..+ ++.|. +|+.++.++..++...+.+...+.++.++.+|+.+...- .
T Consensus 6 ~~k~ilItGas~-~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAA-GIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 467788888654 444444 44454 899999998777666666555444678888998764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+..+
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 46999987654
No 353
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.40 E-value=3.3 Score=29.23 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=52.1
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCC-------------------hHHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDID-------------------SDSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~-------------------~~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
...+|+=+|||. |. .+..|+..|..+++.+|.+ ....+.+++++++... +++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 457899999984 43 5555677788889888543 3445666666665443 45555444
Q ss_pred cccccCC---CcccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 105 IRNLEWR---GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 105 ~~~~~~~---~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
+...... ..+|+|+.... + .....++.+..+..+
T Consensus 100 i~~~~~~~~~~~~DvVi~~~d----~-~~~r~~l~~~~~~~~ 136 (228)
T cd00757 100 LDAENAEELIAGYDLVLDCTD----N-FATRYLINDACVKLG 136 (228)
T ss_pred eCHHHHHHHHhCCCEEEEcCC----C-HHHHHHHHHHHHHcC
Confidence 4221111 26899996332 1 122345555555443
No 354
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.37 E-value=0.76 Score=30.12 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=24.9
Q ss_pred EecCCcc--hHHHHHH--Hc-CCCeEEEEeCChHHHHHHHHH
Q 031325 54 DFGCGCG--TLGAAAT--LL-GADQVIAIDIDSDSLELASEN 90 (161)
Q Consensus 54 D~g~G~G--~~~~~la--~~-~~~~v~~~D~~~~~~~~a~~~ 90 (161)
|+|++.| .....+. .. ...+++++|.+|..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666553 22 355899999999999999888
No 355
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.37 E-value=4.5 Score=30.69 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=46.4
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
...+|+=+|||. |. .+..|+..|..+++.+|-+. ...+.+++++++... +++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 457999999984 33 55556777888999999764 345666666665543 44554444
Q ss_pred ccccc---CCCcccEEEEC
Q 031325 105 IRNLE---WRGHVDTVVMN 120 (161)
Q Consensus 105 ~~~~~---~~~~~D~i~~~ 120 (161)
+.... ....+|+|+..
T Consensus 107 i~~~~~~~~~~~~DvVvd~ 125 (355)
T PRK05597 107 LTWSNALDELRDADVILDG 125 (355)
T ss_pred cCHHHHHHHHhCCCEEEEC
Confidence 43211 11279999973
No 356
>PRK06125 short chain dehydrogenase; Provisional
Probab=89.97 E-value=3.6 Score=29.24 Aligned_cols=73 Identities=26% Similarity=0.333 Sum_probs=47.4
Q ss_pred CCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhc-CCceEEEEcccccccC-------CCccc
Q 031325 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEW-------RGHVD 115 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~-------~~~~D 115 (161)
++++++=.|++.| ++.. +++.|. +|++++.++...+.....+... +.++.++..|+.+... ....|
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 4677888886544 4444 444565 9999999887776665555433 3357788888866432 12689
Q ss_pred EEEECCC
Q 031325 116 TVVMNPP 122 (161)
Q Consensus 116 ~i~~~~p 122 (161)
.++.+.-
T Consensus 84 ~lv~~ag 90 (259)
T PRK06125 84 ILVNNAG 90 (259)
T ss_pred EEEECCC
Confidence 9888754
No 357
>PRK09291 short chain dehydrogenase; Provisional
Probab=89.96 E-value=2.6 Score=29.74 Aligned_cols=72 Identities=22% Similarity=0.190 Sum_probs=45.5
Q ss_pred CeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----CcccEEEEC
Q 031325 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----GHVDTVVMN 120 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----~~~D~i~~~ 120 (161)
.++|-.|++ |.++..++ +.|. +++++..++...+..+......+.++.++.+|+.+...- ...|+++.+
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 457766664 44555544 3454 888888887666555555444444678888888764321 168999987
Q ss_pred CCC
Q 031325 121 PPF 123 (161)
Q Consensus 121 ~p~ 123 (161)
..+
T Consensus 81 ag~ 83 (257)
T PRK09291 81 AGI 83 (257)
T ss_pred CCc
Confidence 543
No 358
>PRK07063 short chain dehydrogenase; Provisional
Probab=89.91 E-value=4 Score=28.99 Aligned_cols=73 Identities=29% Similarity=0.301 Sum_probs=48.4
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhh--cCCceEEEEcccccccCC----------
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQCDIRNLEWR---------- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~---------- 111 (161)
.+++++-.|++.| ++..+ ++.|. +|+.++.++..++...+.+.. .+.++.++..|+.+....
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678887776544 44444 44455 899999988877766666654 233677888888764321
Q ss_pred -CcccEEEECCC
Q 031325 112 -GHVDTVVMNPP 122 (161)
Q Consensus 112 -~~~D~i~~~~p 122 (161)
...|+++.+.-
T Consensus 84 ~g~id~li~~ag 95 (260)
T PRK07063 84 FGPLDVLVNNAG 95 (260)
T ss_pred hCCCcEEEECCC
Confidence 15789988754
No 359
>PRK07890 short chain dehydrogenase; Provisional
Probab=89.84 E-value=3.8 Score=28.96 Aligned_cols=73 Identities=29% Similarity=0.313 Sum_probs=47.9
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++=.|++ |.++..+ ++.|. +|++++.++...+.....+...+.++.++..|+.+...- .
T Consensus 4 ~~k~vlItGa~-~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVG-PGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45677866654 4455544 44455 899999988777666655554444678888888764321 2
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.+.-
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 5799988764
No 360
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.82 E-value=2.8 Score=32.57 Aligned_cols=69 Identities=22% Similarity=0.206 Sum_probs=45.4
Q ss_pred CCCeEEEecCCcchHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC---CC--cccEEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RG--HVDTVVM 119 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~--~~D~i~~ 119 (161)
...+++=+|+ |.++..+++. ....++.+|.+++.++.++.... .+.++.+|..+... .. .+|.+++
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~----~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP----NTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC----CCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 3467777777 5555555442 23389999999998887655421 36788898876432 12 7888888
Q ss_pred CCC
Q 031325 120 NPP 122 (161)
Q Consensus 120 ~~p 122 (161)
..+
T Consensus 304 ~~~ 306 (453)
T PRK09496 304 LTN 306 (453)
T ss_pred CCC
Confidence 555
No 361
>PRK08862 short chain dehydrogenase; Provisional
Probab=89.68 E-value=3.5 Score=28.92 Aligned_cols=73 Identities=21% Similarity=0.132 Sum_probs=48.8
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-----------CC-
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----------RG- 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----------~~- 112 (161)
.+++++=.|++.|. ++..+++.|. +|+.++.++..++...+.+...+.++..+..|..+... .+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46788888888873 4444556565 89999999888877766665544455566666654321 12
Q ss_pred cccEEEECC
Q 031325 113 HVDTVVMNP 121 (161)
Q Consensus 113 ~~D~i~~~~ 121 (161)
..|+++.|.
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 578988875
No 362
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.67 E-value=1.5 Score=34.35 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHH--c-CCCeEEEEeCChHHHHHHHHHHhh-cCCceEEEEccc
Q 031325 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL--L-GADQVIAIDIDSDSLELASENAAD-LELDIDFVQCDI 105 (161)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~--~-~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~d~ 105 (161)
+.........+....+....+.+.|+|.|.|.-...+.. + ....++.||.+..|......+... ....--++...+
T Consensus 182 Ya~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~ 261 (491)
T KOG2539|consen 182 YALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLV 261 (491)
T ss_pred hHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccc
Confidence 344555555555555667788999999997754444433 2 356899999999999988887765 111111111101
Q ss_pred ---ccccCC--CcccEEEECCCCCCC-CCCcchHHHHHHHhhcC
Q 031325 106 ---RNLEWR--GHVDTVVMNPPFGTR-KKGVDMDFLSMALKVAS 143 (161)
Q Consensus 106 ---~~~~~~--~~~D~i~~~~p~~~~-~~~~~~~~~~~~~~~~~ 143 (161)
..++.. ..||++++.-..++. +........+..++...
T Consensus 262 ~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~ 305 (491)
T KOG2539|consen 262 FHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTD 305 (491)
T ss_pred hhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhcc
Confidence 111222 269999997665554 33344466777777754
No 363
>PRK07102 short chain dehydrogenase; Provisional
Probab=89.64 E-value=3.4 Score=29.02 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=44.8
Q ss_pred CeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcC-CceEEEEcccccccCC--------CcccE
Q 031325 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRNLEWR--------GHVDT 116 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~--------~~~D~ 116 (161)
++++-.| |+|.++..+++ .|. +|++++.++...+...+.+...+ -++.++.+|+.+...- ..+|+
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 3567666 45556665554 454 89999998876655444443322 2678889998875321 14699
Q ss_pred EEECCC
Q 031325 117 VVMNPP 122 (161)
Q Consensus 117 i~~~~p 122 (161)
++.+..
T Consensus 80 vv~~ag 85 (243)
T PRK07102 80 VLIAVG 85 (243)
T ss_pred EEECCc
Confidence 998654
No 364
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.61 E-value=3.6 Score=30.38 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=47.6
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccccCC----------
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR---------- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~---------- 111 (161)
.+++++=.|++.| ++.+++ +.|. +|+.+..++...+.+.+.+... +.++.++..|+.+...-
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 5677777776554 444444 4455 8888888887766665555432 22578888898775321
Q ss_pred -CcccEEEECCCC
Q 031325 112 -GHVDTVVMNPPF 123 (161)
Q Consensus 112 -~~~D~i~~~~p~ 123 (161)
...|+++.|.-.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 157999987643
No 365
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=89.57 E-value=0.67 Score=28.06 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCceEEEEcccccccCC-CcccEEEECCCC
Q 031325 85 ELASENAADLELDIDFVQCDIRNLEWR-GHVDTVVMNPPF 123 (161)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~i~~~~p~ 123 (161)
+..++.++..|+++++...+..+.... ..+|+|++.|=+
T Consensus 17 ~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv 56 (96)
T cd05564 17 KKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQV 56 (96)
T ss_pred HHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhH
Confidence 444666777777778888887765432 279999985553
No 366
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=89.57 E-value=0.6 Score=38.70 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=37.9
Q ss_pred CCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHH
Q 031325 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~ 91 (161)
..+..++|+.+|.|++..+.++.|. .|+++|++|.+.-..|.-+
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavl 132 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVL 132 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHH
Confidence 3566899999999999999999985 9999999999987776543
No 367
>PRK08223 hypothetical protein; Validated
Probab=89.52 E-value=1.6 Score=32.14 Aligned_cols=93 Identities=22% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
...+|+-+|||. |. .+..|+..|..+++.+|-+. ..++.+++.+.+.+. ++..+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 567999999994 44 56667777888999888652 124455555554433 45555544
Q ss_pred cccccCC---CcccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 105 IRNLEWR---GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 105 ~~~~~~~---~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
+...... ..+|+|+...... ......++....+..+
T Consensus 106 l~~~n~~~ll~~~DlVvD~~D~~---~~~~r~~ln~~c~~~~ 144 (287)
T PRK08223 106 IGKENADAFLDGVDVYVDGLDFF---EFDARRLVFAACQQRG 144 (287)
T ss_pred cCccCHHHHHhCCCEEEECCCCC---cHHHHHHHHHHHHHcC
Confidence 4432211 2799998422210 0122355666655554
No 368
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.52 E-value=4.3 Score=30.39 Aligned_cols=74 Identities=24% Similarity=0.253 Sum_probs=49.8
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+.+++=.|++. .++..+ ++.|. +|+.++.++..++...+.+...+.++.++.+|+.+...- .
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 456777777544 444444 44455 899999998887777666665555778888998764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 57999987653
No 369
>PRK07677 short chain dehydrogenase; Provisional
Probab=89.41 E-value=3.9 Score=28.93 Aligned_cols=71 Identities=31% Similarity=0.345 Sum_probs=44.9
Q ss_pred CeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Ccc
Q 031325 50 KVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~ 114 (161)
++++-.|++.| ++.. +++.|. +|++++.++...+.+.+.+...+-++.++..|+.+...- ...
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 46776776554 4444 444455 899999888776666555544333577888888664211 157
Q ss_pred cEEEECCC
Q 031325 115 DTVVMNPP 122 (161)
Q Consensus 115 D~i~~~~p 122 (161)
|.++.+..
T Consensus 80 d~lI~~ag 87 (252)
T PRK07677 80 DALINNAA 87 (252)
T ss_pred cEEEECCC
Confidence 99987653
No 370
>PRK06194 hypothetical protein; Provisional
Probab=89.32 E-value=3.7 Score=29.61 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=47.7
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+.++|=.| |+|.++..+++ .|. +|+.+|.++..++.....+...+.++.++.+|+.+...- .
T Consensus 5 ~~k~vlVtG-asggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 5 AGKVAVITG-AASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCCEEEEeC-CccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456777555 44555555543 454 899999887776665555544444677889998764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+.-.
T Consensus 83 ~id~vi~~Ag~ 93 (287)
T PRK06194 83 AVHLLFNNAGV 93 (287)
T ss_pred CCCEEEECCCC
Confidence 46999987654
No 371
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=89.00 E-value=1 Score=32.28 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCeEEEecCCcchHHHHH--HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC---C-cccEEEECCC
Q 031325 49 NKVVADFGCGCGTLGAAA--TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---G-HVDTVVMNPP 122 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~l--a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---~-~~D~i~~~~p 122 (161)
+-+|+++-.|.|++-..+ |..+..-|.++|+++.+-+.-+.|.... -+-..|+..+... . .+|.+.++||
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~----L~k~~~I~~lt~kefd~l~~~m~lMSPp 78 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSN----LVKTRNIQSLTVKEFDKLQANMLLMSPP 78 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccc----hhhccccceeeHhhhhhcccceEeeCCC
Confidence 457899999999866555 4456678999999998877655552211 1112222222211 1 7899999999
Q ss_pred CCCCC--------CCcchHHHHHHHhhcC
Q 031325 123 FGTRK--------KGVDMDFLSMALKVAS 143 (161)
Q Consensus 123 ~~~~~--------~~~~~~~~~~~~~~~~ 143 (161)
+.... .+.....+-.+..+++
T Consensus 79 CQPfTRiG~q~D~~D~Rs~aflhil~~lP 107 (338)
T KOG0919|consen 79 CQPFTRIGLQRDTEDKRSDAFLHILGLLP 107 (338)
T ss_pred CCchhhhcccccccCchhHHHHHHHhhhh
Confidence 87652 2222345555666655
No 372
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=89.00 E-value=4.8 Score=28.72 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=50.4
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Cc
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~ 113 (161)
++++++-.|++.|. ++..+++.|. +++.++.++..++.....+...+.++.++.+|+.+...- ..
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 56778888877652 3344455565 788889888777766666655454678888998765321 14
Q ss_pred ccEEEECCCC
Q 031325 114 VDTVVMNPPF 123 (161)
Q Consensus 114 ~D~i~~~~p~ 123 (161)
.|+++.+...
T Consensus 88 id~li~~ag~ 97 (265)
T PRK07097 88 IDILVNNAGI 97 (265)
T ss_pred CCEEEECCCC
Confidence 7999987654
No 373
>PRK07035 short chain dehydrogenase; Provisional
Probab=88.99 E-value=4.6 Score=28.45 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=47.7
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Cc
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~ 113 (161)
++++++=.|+++|. +...+++.|. +|+.++.++...+...+.+...+.++.++..|+.+...- ..
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGR 85 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45677777766552 3333444565 999999988777666665554444566777787654321 14
Q ss_pred ccEEEECCCC
Q 031325 114 VDTVVMNPPF 123 (161)
Q Consensus 114 ~D~i~~~~p~ 123 (161)
.|+++.+..+
T Consensus 86 id~li~~ag~ 95 (252)
T PRK07035 86 LDILVNNAAA 95 (252)
T ss_pred CCEEEECCCc
Confidence 7999977653
No 374
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.88 E-value=3.7 Score=29.22 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHH-HHHHHHHHhhcCC-ceEEEEcccccccC-----C-----
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDS-LELASENAADLEL-DIDFVQCDIRNLEW-----R----- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~-~~~a~~~~~~~~~-~~~~~~~d~~~~~~-----~----- 111 (161)
.+.++|-.|++ |+++..+++ .+..+|+.++.++.. ++.+.+.++..+- ++.++..|+.+... .
T Consensus 7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 45678877775 455555543 443488888888764 5555454544443 67888888866432 1
Q ss_pred CcccEEEECCC
Q 031325 112 GHVDTVVMNPP 122 (161)
Q Consensus 112 ~~~D~i~~~~p 122 (161)
...|+++.+..
T Consensus 86 g~id~li~~ag 96 (253)
T PRK07904 86 GDVDVAIVAFG 96 (253)
T ss_pred CCCCEEEEeee
Confidence 25888887654
No 375
>PRK07478 short chain dehydrogenase; Provisional
Probab=88.59 E-value=5.5 Score=28.15 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++=.|++. +++..+ ++.|. +|+.++.++..++.....+...+.++.++..|+.+.... .
T Consensus 5 ~~k~~lItGas~-giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASS-GIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 456777666654 444444 44455 899999888877766666655444677888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 57999987653
No 376
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.58 E-value=4.6 Score=30.24 Aligned_cols=74 Identities=24% Similarity=0.365 Sum_probs=49.8
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-----------CC
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----------RG 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 112 (161)
.++++|=.|+++| ++..+ ++.|. +|+.++.++..++...+.+...+.++.++..|+.+... ..
T Consensus 6 ~~k~vlITGAs~G-IG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSG-IGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 4567777776544 44444 44565 89999999888877766666655567778888876421 12
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.|.-.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 57999987653
No 377
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.32 E-value=1 Score=32.81 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhhcCCceEEEEcccccccC-CCcc-cEEEECCCCCCC
Q 031325 81 SDSLELASENAADLELDIDFVQCDIRNLEW-RGHV-DTVVMNPPFGTR 126 (161)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~-D~i~~~~p~~~~ 126 (161)
.+.+..+.+.++ ++++.++|..+... ..+- |+|+|||||.+.
T Consensus 144 ~~~L~~~a~~l~----~~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~ 187 (274)
T COG0338 144 EENLKLFAEKLK----NATIENGDFEEVLADADSGDDFVYCDPPYLPL 187 (274)
T ss_pred HHHHHHHHHHHh----cCeEEcCCHHHHHhhccCCCcEEEeCCCCCcc
Confidence 333444444444 47899999998765 3355 899999999774
No 378
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.21 E-value=6.6 Score=27.10 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=51.0
Q ss_pred CCCeEEEecCCc-c-hHHHHHHHcCCCeEEEEeCChH-------------------HHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCGC-G-TLGAAATLLGADQVIAIDIDSD-------------------SLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G~-G-~~~~~la~~~~~~v~~~D~~~~-------------------~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
...+|+=+|||. | ..+..|+..|..+++.+|.+.- ..+.+++++++.+. +++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 457899999885 2 2444455668889999986521 23444555555443 44444444
Q ss_pred cccccC--CCcccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 105 IRNLEW--RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 105 ~~~~~~--~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
+.+... ...||+|++... + ......+.+..+..+
T Consensus 100 ~~~~~~~~~~~~dvVi~~~~----~-~~~~~~ln~~c~~~~ 135 (197)
T cd01492 100 ISEKPEEFFSQFDVVVATEL----S-RAELVKINELCRKLG 135 (197)
T ss_pred ccccHHHHHhCCCEEEECCC----C-HHHHHHHHHHHHHcC
Confidence 432211 127999997433 1 223355666655554
No 379
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.12 E-value=8.2 Score=28.07 Aligned_cols=95 Identities=14% Similarity=0.198 Sum_probs=52.4
Q ss_pred eEEEecCCc--chHHHHHHHcCCCeEEEEeCChHHHHHHHHHHh-------hcCC-----------ceEEEEcccccccC
Q 031325 51 VVADFGCGC--GTLGAAATLLGADQVIAIDIDSDSLELASENAA-------DLEL-----------DIDFVQCDIRNLEW 110 (161)
Q Consensus 51 ~vlD~g~G~--G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~-----------~~~~~~~d~~~~~~ 110 (161)
+|.=+|+|. +.++..++..+. +|+++|.+++.++.++..++ +.+. ++. ...|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT-GTTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCCHHH---
Confidence 566777773 345555566565 99999999999876654322 2221 111 1122211
Q ss_pred CCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccC
Q 031325 111 RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTS 153 (161)
Q Consensus 111 ~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (161)
....|+|+..-|= .......++..+...+++...+..+.+
T Consensus 80 ~~~aDlVi~av~e---~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 LKDADLVIEAATE---NMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred hccCCeeeecccc---cHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 1257988864330 223334777887777764444444433
No 380
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=87.98 E-value=2.1 Score=31.67 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=36.3
Q ss_pred CCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh
Q 031325 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~ 93 (161)
.+.+|+-+|+|.=.+...+++.+ ..|.++|+|+..+.+-+.++..
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCC-ceeEEEeCCHHHHHHHHHHHHH
Confidence 57789999988776777777755 4999999999999887776654
No 381
>PRK07814 short chain dehydrogenase; Provisional
Probab=87.83 E-value=6.1 Score=28.17 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=48.4
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++.++|=.|+ +|.++..++ ++|. +|++++.++..++.....+...+.++.++..|+.+...- .
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5677887775 555555544 4455 999999988777666555554444677888888765421 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.+.-
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 5799988654
No 382
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=87.79 E-value=6 Score=27.97 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=50.0
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
+++++|=.|+ +|.++..+++ .|. +|++++.++..++.....+...+.++.++..|+.+...- .
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5678887774 5666666554 455 899999988777666666655454677888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 47899887654
No 383
>PRK08703 short chain dehydrogenase; Provisional
Probab=87.76 E-value=7.5 Score=27.17 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=35.8
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcC-CceEEEEccccc
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRN 107 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~ 107 (161)
++++++-.|++ |.++..++ +.|. +|++++.++...+.....+...+ ..+.+...|+.+
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 56788888864 44554444 4455 89999998877665555544332 234556666643
No 384
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=87.74 E-value=6 Score=27.99 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=48.1
Q ss_pred CCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+++++-.|+++| ++.. +++.|. +++.++.++...+.....++..+.++.++..|+.+...- .
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888886655 3443 444555 788888887777665555544444567788888765321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+..+
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 57999887653
No 385
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.72 E-value=6.7 Score=27.43 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Cc
Q 031325 49 NKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GH 113 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~ 113 (161)
.++++-.|+ +|.++..+++ .|. +|++++.++...+...+.+...+-++.++.+|+.+.... ..
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456777774 5666555554 455 899999988766655555544333678889999775421 14
Q ss_pred ccEEEECCCC
Q 031325 114 VDTVVMNPPF 123 (161)
Q Consensus 114 ~D~i~~~~p~ 123 (161)
.|+++.+.-.
T Consensus 84 id~lv~~ag~ 93 (241)
T PRK07454 84 PDVLINNAGM 93 (241)
T ss_pred CCEEEECCCc
Confidence 7999987654
No 386
>PRK05872 short chain dehydrogenase; Provisional
Probab=87.42 E-value=6.9 Score=28.59 Aligned_cols=73 Identities=26% Similarity=0.375 Sum_probs=45.1
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
+++++|-.|++.| ++..++ +.|. +|+.++.++..++...+.+.. +..+..+..|+.+...- .
T Consensus 8 ~gk~vlItGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARG-IGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5677887775554 444444 4455 899999988776655444432 22455556787664221 2
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.|.-.
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 57999987654
No 387
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.17 E-value=1.4 Score=33.79 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHh-------hcCC---ceE
Q 031325 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAA-------DLEL---DID 99 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~-------~~~~---~~~ 99 (161)
+.....+..+.......+++...|+|.|.|.....++.. +...-+|+++....-+.+..+.. -.|- .+.
T Consensus 175 E~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 175 ETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred hhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 333334444455556668899999999999988777664 56688899988666555543322 1222 467
Q ss_pred EEEcccccccCCC----cccEEEECCC
Q 031325 100 FVQCDIRNLEWRG----HVDTVVMNPP 122 (161)
Q Consensus 100 ~~~~d~~~~~~~~----~~D~i~~~~p 122 (161)
.++++..+..... ..++|+.|-.
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~ 281 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNV 281 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecc
Confidence 7888776654321 6788887654
No 388
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.11 E-value=8.3 Score=26.98 Aligned_cols=73 Identities=21% Similarity=0.100 Sum_probs=47.9
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++.+++=.| |+|.++..+++ .|. ++++++.++..++...+.++..+.++.++.+|+.+...- .
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456777555 45666666654 455 888889888777666555544444688889998764321 2
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.+.-
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 5798887654
No 389
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.07 E-value=5.3 Score=28.23 Aligned_cols=67 Identities=24% Similarity=0.286 Sum_probs=42.2
Q ss_pred eEEEecCCcc--hHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC---CC--cccEEEECCC
Q 031325 51 VVADFGCGCG--TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RG--HVDTVVMNPP 122 (161)
Q Consensus 51 ~vlD~g~G~G--~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~--~~D~i~~~~p 122 (161)
+++=+|||.= .++..|++.|. .|+.+|.+++.++...... .....+++|..+... .+ .+|++++.-.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~----~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE----LDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh----cceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 4555666632 23333444555 9999999998887632211 146888898887543 11 8999998443
No 390
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=87.01 E-value=4.8 Score=29.76 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=45.8
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++-.|+. |.++..+++ .|. +|+.++.++...+.+.+.+...+.++.++..|+.+...- .
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45667766654 555555443 454 899999887766655544432222577888888765321 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.|..
T Consensus 83 ~iD~li~nAg 92 (322)
T PRK07453 83 PLDALVCNAA 92 (322)
T ss_pred CccEEEECCc
Confidence 4799998765
No 391
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.86 E-value=4.9 Score=32.62 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=45.7
Q ss_pred CCCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhc-----C----CceEEEEcccccccCC--
Q 031325 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADL-----E----LDIDFVQCDIRNLEWR-- 111 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~-----~----~~~~~~~~d~~~~~~~-- 111 (161)
..+++||-.|+ +|.++..+++ .|. +|++++.++..++.....+... + .++.++.+|+.+...-
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 35566666554 5666666554 354 8999888877665444333221 1 1478899999875321
Q ss_pred --CcccEEEECCC
Q 031325 112 --GHVDTVVMNPP 122 (161)
Q Consensus 112 --~~~D~i~~~~p 122 (161)
...|+||++.-
T Consensus 156 aLggiDiVVn~AG 168 (576)
T PLN03209 156 ALGNASVVICCIG 168 (576)
T ss_pred HhcCCCEEEEccc
Confidence 26899988654
No 392
>PRK10904 DNA adenine methylase; Provisional
Probab=86.82 E-value=1.2 Score=32.42 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=21.6
Q ss_pred ceEEEEcccccccCC-CcccEEEECCCCC
Q 031325 97 DIDFVQCDIRNLEWR-GHVDTVVMNPPFG 124 (161)
Q Consensus 97 ~~~~~~~d~~~~~~~-~~~D~i~~~~p~~ 124 (161)
++++.+.|..+.... ..=|.|++||||.
T Consensus 157 ~v~i~~~Df~~~i~~~~~~~fvYlDPPY~ 185 (271)
T PRK10904 157 NAFFYCESYADSMARADKGSVVYCDPPYA 185 (271)
T ss_pred CCEEEECCHHHHHhhcCCCcEEEECCCCC
Confidence 578899999886432 2568999999994
No 393
>PRK06196 oxidoreductase; Provisional
Probab=86.78 E-value=11 Score=27.87 Aligned_cols=70 Identities=26% Similarity=0.247 Sum_probs=45.3
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+++++=.|++ |.++..+++ .|. +|++++.++...+.+...+. ++.++.+|+.+...- .
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 56678877754 555555554 455 89999988776655444332 267788888765321 2
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.|...
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 57999987653
No 394
>PRK08589 short chain dehydrogenase; Validated
Probab=86.73 E-value=7.9 Score=27.80 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=45.2
Q ss_pred CCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
+++++|=.|++.| ++.. +++.|. +|++++.+ ..++...+.+...+.++.++..|+.+...- .
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5667777776554 4444 444454 89999988 444444444444343677888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+..+
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 47999988654
No 395
>PRK06197 short chain dehydrogenase; Provisional
Probab=86.61 E-value=11 Score=27.69 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=46.4
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccccCC----------
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR---------- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~---------- 111 (161)
.+++++=.|+ +|.++..+++ .|. +++.+..++...+.+.+.+... +.++.++..|+.+...-
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 5667776665 5555555554 455 8888888877666555544432 22577888898765421
Q ss_pred -CcccEEEECCC
Q 031325 112 -GHVDTVVMNPP 122 (161)
Q Consensus 112 -~~~D~i~~~~p 122 (161)
...|+++.+..
T Consensus 93 ~~~iD~li~nAg 104 (306)
T PRK06197 93 YPRIDLLINNAG 104 (306)
T ss_pred CCCCCEEEECCc
Confidence 15799998764
No 396
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.57 E-value=8.2 Score=30.40 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=42.6
Q ss_pred CCCeEEEecCCcchHH--HHHHHcCCCeEEEEeCChH-HHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCC
Q 031325 48 SNKVVADFGCGCGTLG--AAATLLGADQVIAIDIDSD-SLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~--~~la~~~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~ 123 (161)
.+.+|+=+|+|.-++. ..++++|. +|+++|.++. ......+.++..| +.+..++... ....+|+|+..|-.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~g--v~~~~~~~~~--~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALG--ATVRLGPGPT--LPEDTDLVVTSPGW 88 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcC--CEEEECCCcc--ccCCCCEEEECCCc
Confidence 5678999999865543 23344565 8999996653 3333334455555 5555554333 12268999987643
No 397
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.51 E-value=3.1 Score=31.77 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=44.3
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCC-------------------hHHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDID-------------------SDSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~-------------------~~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
.+.+|+=+|||. |. .+..|+..|..+++.+|-+ ....+.+.+.+.+... ++......
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 567899999984 44 5555667788899999987 3445666666655432 34444333
Q ss_pred cccccC---CCcccEEEE
Q 031325 105 IRNLEW---RGHVDTVVM 119 (161)
Q Consensus 105 ~~~~~~---~~~~D~i~~ 119 (161)
+..... ...+|+|+.
T Consensus 214 ~~~~~~~~~~~~~D~Vv~ 231 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVD 231 (376)
T ss_pred CChHHHHHHHhCCCEEEE
Confidence 322111 126899885
No 398
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=86.49 E-value=8.3 Score=27.02 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=47.8
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++.++|-.|++ |.++..+++ .+. +|+.++.++.....+...+...+.++.++.+|+.+.... .
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35677777754 555555543 444 899999888776666555554444678888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 80 ~~d~vi~~ag~ 90 (250)
T TIGR03206 80 PVDVLVNNAGW 90 (250)
T ss_pred CCCEEEECCCC
Confidence 47988887754
No 399
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=86.49 E-value=7.4 Score=27.92 Aligned_cols=73 Identities=23% Similarity=0.227 Sum_probs=46.9
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++-.|++.| ++..+ ++.|. +|+.++.++...+.....+...+.++.++.+|+.+...- .
T Consensus 9 ~~k~vlVtGas~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGV-LGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4567777776544 44444 44455 899999887766655555544444677888888764321 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.+..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 5799998754
No 400
>PRK08643 acetoin reductase; Validated
Probab=86.48 E-value=7.7 Score=27.39 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=46.4
Q ss_pred CeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Ccc
Q 031325 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~ 114 (161)
++++=.| |+|.++..+++ .|. +|+.++.++...+.....+...+.++.++.+|+.+...- ...
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566555 44555555544 454 899999888777666665554444677888888775321 147
Q ss_pred cEEEECCCC
Q 031325 115 DTVVMNPPF 123 (161)
Q Consensus 115 D~i~~~~p~ 123 (161)
|+++.+..+
T Consensus 81 d~vi~~ag~ 89 (256)
T PRK08643 81 NVVVNNAGV 89 (256)
T ss_pred CEEEECCCC
Confidence 999887643
No 401
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.24 E-value=6.1 Score=30.76 Aligned_cols=72 Identities=32% Similarity=0.344 Sum_probs=43.1
Q ss_pred CCCeEEEecCCcchHHH--HHHHcCCCeEEEEeCCh-HHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCC
Q 031325 48 SNKVVADFGCGCGTLGA--AATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPF 123 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~--~la~~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~ 123 (161)
.+++++=+|+|..+... .+++.|. .|+++|.++ ..++.....+...+ +.+..++..+.. ...+|+|+.++-.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~-~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELG--IELVLGEYPEEF-LEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CEEEeCCcchhH-hhcCCEEEECCCC
Confidence 46788889888744322 2334565 999999975 33332223333333 566666665522 1268999987654
No 402
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.24 E-value=3.5 Score=31.10 Aligned_cols=50 Identities=34% Similarity=0.448 Sum_probs=36.0
Q ss_pred HhhcCCCCCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHHH
Q 031325 41 ENSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (161)
Q Consensus 41 ~~~~~~~~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~ 90 (161)
.......++.++.-+|||. |-..+.-|+. +...++++|+++..+++|++.
T Consensus 178 ~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 178 VNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 3344556788888888875 3333443443 778999999999999998774
No 403
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=86.04 E-value=5.5 Score=29.41 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=42.1
Q ss_pred eEEEecCC-cch-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEccccc
Q 031325 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCDIRN 107 (161)
Q Consensus 51 ~vlD~g~G-~G~-~~~~la~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (161)
+|+-+||| .|. .+..|+..|..+++.+|.+. ...+.|.+++++... +++.+..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 46778887 333 44556666888999988552 123444555554332 66777777665
Q ss_pred ccC--CCcccEEEE
Q 031325 108 LEW--RGHVDTVVM 119 (161)
Q Consensus 108 ~~~--~~~~D~i~~ 119 (161)
... ...||+|+.
T Consensus 81 ~~~~f~~~fdvVi~ 94 (291)
T cd01488 81 KDEEFYRQFNIIIC 94 (291)
T ss_pred hhHHHhcCCCEEEE
Confidence 422 128999997
No 404
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.99 E-value=9.6 Score=26.63 Aligned_cols=74 Identities=26% Similarity=0.286 Sum_probs=47.5
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+.+++-.|+ +|.++..++ +.|. +|++++-++..+......+...+.++.++.+|+.+...- .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4567886664 555555554 4454 899999887766655555554444578888888764310 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
.+|.++.+...
T Consensus 83 ~~d~vi~~ag~ 93 (251)
T PRK12826 83 RLDILVANAGI 93 (251)
T ss_pred CCCEEEECCCC
Confidence 57999887654
No 405
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=85.56 E-value=1.6 Score=30.88 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHh
Q 031325 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAA 92 (161)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~~~~ 92 (161)
...|++.++..+.+.++.+.+|+.-|.|+.+..+.+. +..++++.|-+|-+.++|+....
T Consensus 28 VPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 28 VPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 3466777777778889999999999999999998875 44488889999999998886553
No 406
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.38 E-value=4.3 Score=30.31 Aligned_cols=45 Identities=40% Similarity=0.522 Sum_probs=31.2
Q ss_pred CCCCCCeEEEecCC-cchHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 031325 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 45 ~~~~~~~vlD~g~G-~G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~ 89 (161)
...++++|+-.||| .|..++.+++. |..+++++|.+++.++.+++
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 34467888888875 23344455554 55579999999999888765
No 407
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.38 E-value=8.9 Score=28.02 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=27.1
Q ss_pred eEEEecCCc--chHHHHHHHcCCCeEEEEeCChHHHHHHHHH
Q 031325 51 VVADFGCGC--GTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (161)
Q Consensus 51 ~vlD~g~G~--G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~ 90 (161)
+|.=+|+|. +.++..+++.|. +|+.+|.+++.++.+.+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQE 43 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Confidence 566677763 234444555555 899999999999887654
No 408
>PRK08328 hypothetical protein; Provisional
Probab=85.32 E-value=5.3 Score=28.32 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=24.8
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCC
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDID 80 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~ 80 (161)
.+.+|+=+|||. |. .+..++..|..+++.+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 457899999994 43 5555677788899999854
No 409
>PRK09242 tropinone reductase; Provisional
Probab=85.31 E-value=9.2 Score=27.04 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=47.8
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccccC-----------
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEW----------- 110 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~----------- 110 (161)
.+++++-.|++.| ++..+ ++.|. +|+.++.+++..+.....+... +.++.++.+|+.+...
T Consensus 8 ~~k~~lItGa~~g-IG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKG-IGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5677888877544 44444 44455 8999998887776665555443 3367788888876421
Q ss_pred CCcccEEEECCCC
Q 031325 111 RGHVDTVVMNPPF 123 (161)
Q Consensus 111 ~~~~D~i~~~~p~ 123 (161)
....|+++.+...
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 1257999887654
No 410
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.28 E-value=3.1 Score=33.21 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCcch-HHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 031325 47 VSNKVVADFGCGCGT-LGAAATLL-GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~-~~~~la~~-~~~~v~~~D~~~~~~~~a~~ 89 (161)
.++.+|+-+|||.-+ .++..++. |. .|+++|.+++.++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 468899999999765 55555654 66 89999999999998876
No 411
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.25 E-value=12 Score=27.27 Aligned_cols=98 Identities=28% Similarity=0.301 Sum_probs=54.5
Q ss_pred CeEEEecCCcch--HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc--------CC-----------ceEEEEcccccc
Q 031325 50 KVVADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAADL--------EL-----------DIDFVQCDIRNL 108 (161)
Q Consensus 50 ~~vlD~g~G~G~--~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~--------~~-----------~~~~~~~d~~~~ 108 (161)
.+|.=+|+|.=+ ++..+++.|. +|+.+|.+++.++.+++.+... .+ ++. ...|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH
Confidence 467778887543 4444455555 9999999999988887654211 00 111 12222221
Q ss_pred cCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 109 EWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 109 ~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
. ...|+|+..-|-. ......+++.+...+++...+..+.++
T Consensus 82 ~--~~aDlVieavpe~---~~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 82 V--KDADLVIEAVPED---PEIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred h--cCCCEEEEeccCC---HHHHHHHHHHHHhhCCCCCEEEECccc
Confidence 1 2579998766611 123346677777666644444445444
No 412
>PRK08303 short chain dehydrogenase; Provisional
Probab=85.25 E-value=8.7 Score=28.34 Aligned_cols=72 Identities=24% Similarity=0.153 Sum_probs=44.5
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCCh----------HHHHHHHHHHhhcCCceEEEEcccccccCC--
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDS----------DSLELASENAADLELDIDFVQCDIRNLEWR-- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~----------~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-- 111 (161)
.+++++-.|++.| ++..+ ++.|. +|+.++.+. +.++.+.+.+...+.++.++..|+.+...-
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 5678888887665 44444 44455 888888763 334444444444444567788888765321
Q ss_pred ---------CcccEEEECC
Q 031325 112 ---------GHVDTVVMNP 121 (161)
Q Consensus 112 ---------~~~D~i~~~~ 121 (161)
...|+++.|.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 2579999886
No 413
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.20 E-value=9.5 Score=26.93 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=48.1
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
+++++|=.| |+|.++..+++ .|. +|+.++.++...+.+.+.+...+.++.++.+|+.+...- .
T Consensus 6 ~~~~vlItG-asg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTG-AASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456677555 45555555544 455 899999998777666665555444677888998765421 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 47999887654
No 414
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.19 E-value=9.8 Score=26.61 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=46.7
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++.++|=.|++ |.++..+ ++.|. +|++++.++...+.....+.. +.++.++.+|+.+.... .
T Consensus 4 ~~~~vlItGas-g~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 4 EGKVAIVTGAS-SGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45667777654 4444444 44455 799999998776665555443 33577888888765331 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
.+|+++.+...
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 47999987654
No 415
>PRK07062 short chain dehydrogenase; Provisional
Probab=85.15 E-value=8.9 Score=27.26 Aligned_cols=74 Identities=24% Similarity=0.258 Sum_probs=47.7
Q ss_pred CCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccccCC----------
Q 031325 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR---------- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~---------- 111 (161)
.+++++-.|++.| ++.. +++.|. +|+.++.++..++.+.+.+... +.++.++..|+.+...-
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 5677888886655 4444 444455 8999999887776665555433 22566788888765321
Q ss_pred -CcccEEEECCCC
Q 031325 112 -GHVDTVVMNPPF 123 (161)
Q Consensus 112 -~~~D~i~~~~p~ 123 (161)
...|+++.+.-.
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 257999887654
No 416
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=85.11 E-value=6.8 Score=27.93 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=48.4
Q ss_pred eEEEecCC-cch-HHHHHHHcCCCeEEEEeCChH-------------------HHHHHHHHHhhcCC--ceEEEEccccc
Q 031325 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDSD-------------------SLELASENAADLEL--DIDFVQCDIRN 107 (161)
Q Consensus 51 ~vlD~g~G-~G~-~~~~la~~~~~~v~~~D~~~~-------------------~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (161)
+|+=+||| .|. .+..|+..|..+++.+|.+.- ..+.+++++++... ++.....++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 36677776 333 444455568889999886521 23444445544332 56666666632
Q ss_pred ---ccC--CCcccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 108 ---LEW--RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 108 ---~~~--~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
.+. ...||+|+...- ......++.+......
T Consensus 81 ~~~~~~~f~~~~DvVi~a~D-----n~~aR~~ln~~c~~~~ 116 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALD-----NIIARRYVNGMLIFLI 116 (234)
T ss_pred hhhchHHHHhCCCEEEECCC-----CHHHHHHHHHHHHHcC
Confidence 111 127999997322 1223466666666554
No 417
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.11 E-value=5.3 Score=30.48 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=35.9
Q ss_pred CCeEEEecCCcchHHHHHHHc-CCCeEEE---EeCChHHHHHHHHHHhhcCCceEEEEcccccc
Q 031325 49 NKVVADFGCGCGTLGAAATLL-GADQVIA---IDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~~-~~~~v~~---~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 108 (161)
+.-++++|||-|.++.+++.. +...++- +|-....+..-+.........+.=+..|+.++
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dL 246 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDL 246 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhc
Confidence 368999999999999999875 3344444 66655555444333333222333444455444
No 418
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=84.97 E-value=10 Score=26.76 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=47.3
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.++++|=.|++ |.++..++ +.|. +++.++.++..++.....+...+.++.++..|+.+...- .
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 56677777755 44555444 4455 899999887776665555554444567778888664321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
.+|+++.+...
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 47999987653
No 419
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=84.95 E-value=13 Score=27.13 Aligned_cols=76 Identities=21% Similarity=0.279 Sum_probs=55.9
Q ss_pred CCCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC---ceEEEEcccccccC----------
Q 031325 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEW---------- 110 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~---------- 110 (161)
..+++++--|.++|. ++..+++.|. +|+..+.+++.++...+.+...+. ++..+..|+.+.+.
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 467788888888873 5566677766 999999999998888777666554 47888889875432
Q ss_pred --CCcccEEEECCCC
Q 031325 111 --RGHVDTVVMNPPF 123 (161)
Q Consensus 111 --~~~~D~i~~~~p~ 123 (161)
..+.|+.+.|.-.
T Consensus 85 ~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGA 99 (270)
T ss_pred HhCCCCCEEEEcCCc
Confidence 2268999987553
No 420
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.92 E-value=4 Score=31.40 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=47.7
Q ss_pred CeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC----CcccEEEECCCC
Q 031325 50 KVVADFGCGC-GT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----GHVDTVVMNPPF 123 (161)
Q Consensus 50 ~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----~~~D~i~~~~p~ 123 (161)
.+||-+|||. |+ .+..+++.+..+|+..|-++...+.+...... +++....|+.+.+.- ..+|+|+.-.|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 4688999953 22 22224555646999999998888776655432 578888888876442 167999865553
No 421
>PRK06949 short chain dehydrogenase; Provisional
Probab=84.87 E-value=11 Score=26.65 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=48.0
Q ss_pred CCCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------
Q 031325 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 111 (161)
..+++++-.| |+|.++..+++ .|. +|++++.+++.++.....+...+.++.++.+|+.+...-
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 3567788777 55555555544 355 899999998877766655544333577888888654211
Q ss_pred CcccEEEECCC
Q 031325 112 GHVDTVVMNPP 122 (161)
Q Consensus 112 ~~~D~i~~~~p 122 (161)
...|+++.+..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 14799888655
No 422
>PLN02780 ketoreductase/ oxidoreductase
Probab=84.87 E-value=7 Score=29.10 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=38.3
Q ss_pred CCCeEEEecCCcc---hHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEccccc
Q 031325 48 SNKVVADFGCGCG---TLGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRN 107 (161)
Q Consensus 48 ~~~~vlD~g~G~G---~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~ 107 (161)
.+.+++-.|+++| .++..+++.|. +|+.++.+++.++...+.++.. +.++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 4667887776555 24444555565 8999999998887776665542 2255666677653
No 423
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=84.83 E-value=2.1 Score=31.58 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=43.7
Q ss_pred ecCCcchHHHHHHHc----CCCeEEEEeCChHHHHHHHHHHhhc----CC--ceEEEEcccccccC-----CC-cccEEE
Q 031325 55 FGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADL----EL--DIDFVQCDIRNLEW-----RG-HVDTVV 118 (161)
Q Consensus 55 ~g~G~G~~~~~la~~----~~~~v~~~D~~~~~~~~a~~~~~~~----~~--~~~~~~~d~~~~~~-----~~-~~D~i~ 118 (161)
+-.|+|+++.++.++ +...++.+|.|+..+-..++.+... ++ .+.++.+|+.+... .. .+|+|+
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 456888898888764 4569999999999998888877422 22 23456888877533 22 799999
Q ss_pred ECCCCCCC
Q 031325 119 MNPPFGTR 126 (161)
Q Consensus 119 ~~~p~~~~ 126 (161)
....+-|.
T Consensus 83 HaAA~KhV 90 (293)
T PF02719_consen 83 HAAALKHV 90 (293)
T ss_dssp E------H
T ss_pred EChhcCCC
Confidence 97777664
No 424
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.76 E-value=11 Score=26.98 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=46.1
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++-.|+ +|.++..++ ..|. +|++++.++..++...+.+...+.++.++..|+.+...- .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5667877775 555555544 3454 899999888776655544544333567788888754311 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.+..
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 4699998753
No 425
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.69 E-value=5.1 Score=28.70 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred CCCeEEEecCC-cch-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G-~G~-~~~~la~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
...+|+=+||| .|. .+..|+..|..+++.+|.+. ..++.+++++.+... ++..+...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 56789999997 343 44445666888898888551 234445555554433 45555544
Q ss_pred cccccCC---CcccEEEE
Q 031325 105 IRNLEWR---GHVDTVVM 119 (161)
Q Consensus 105 ~~~~~~~---~~~D~i~~ 119 (161)
+...... ..+|+|+.
T Consensus 111 i~~~~~~~~~~~~DiVi~ 128 (245)
T PRK05690 111 LDDDELAALIAGHDLVLD 128 (245)
T ss_pred CCHHHHHHHHhcCCEEEe
Confidence 4331111 26999986
No 426
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=84.65 E-value=13 Score=26.95 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC----ceEEEEcccccc
Q 031325 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNL 108 (161)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~ 108 (161)
....++..+..........|+.+|||-=.....+.......++=+|. |+.++.-++.+...+. +..++..|+. .
T Consensus 66 Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~ 143 (260)
T TIGR00027 66 RTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR-Q 143 (260)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch-h
Confidence 33444444443322233579999999877666664322224444443 6677766666665432 6778888876 2
Q ss_pred cCCC----------cccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 109 EWRG----------HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 109 ~~~~----------~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
.+.. ..-++++-..+..++.......+..+.+...
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~ 188 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSA 188 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCC
Confidence 2210 2335666666666666766678888877663
No 427
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.48 E-value=1.3 Score=30.27 Aligned_cols=37 Identities=38% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEecCCcch--HHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 031325 52 VADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 52 vlD~g~G~G~--~~~~la~~~~~~v~~~D~~~~~~~~a~~ 89 (161)
|--+|.|.=+ .+..+|+.|. +|+|+|++++.++..++
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT
T ss_pred EEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh
Confidence 4445555332 2333445565 99999999998887664
No 428
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.47 E-value=12 Score=26.58 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=24.4
Q ss_pred CCCeEEEecCC-cchH-HHHHHHcCCCeEEEEeCC
Q 031325 48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDID 80 (161)
Q Consensus 48 ~~~~vlD~g~G-~G~~-~~~la~~~~~~v~~~D~~ 80 (161)
...+|+=+||| .|.. +..|++.|..+++.+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999998 5553 444666688899999965
No 429
>PRK09072 short chain dehydrogenase; Provisional
Probab=84.20 E-value=11 Score=26.78 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=46.0
Q ss_pred CCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC----------Cc
Q 031325 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------GH 113 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----------~~ 113 (161)
++.++|=.|++. .++.. +++.|. +|++++.++..++.....+ ..+-++.++..|+.+.... ..
T Consensus 4 ~~~~vlItG~s~-~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASG-GIGQALAEALAAAGA-RLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 456677777654 44444 444565 8999999887776555444 2222677888888765321 14
Q ss_pred ccEEEECCCC
Q 031325 114 VDTVVMNPPF 123 (161)
Q Consensus 114 ~D~i~~~~p~ 123 (161)
.|.++.+..+
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999987554
No 430
>PRK07024 short chain dehydrogenase; Provisional
Probab=84.17 E-value=8.1 Score=27.40 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=44.6
Q ss_pred CeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Ccc
Q 031325 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~ 114 (161)
.+++=.|+ +|.++..++ +.|. +|+.++.+++.++...+.+...+ ++.++.+|+.+...- ...
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 45666665 555555554 4455 89999998877665544443323 678888888764321 147
Q ss_pred cEEEECCCC
Q 031325 115 DTVVMNPPF 123 (161)
Q Consensus 115 D~i~~~~p~ 123 (161)
|+++.+.-.
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999987543
No 431
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=84.03 E-value=16 Score=28.62 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=43.0
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQ 102 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~ 102 (161)
...+|+=+|||. ++.+.++ .|.+.++.+|-+. ...+.+.+++.+.+- ++.++.
T Consensus 19 ~~s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~ 96 (425)
T cd01493 19 ESAHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVE 96 (425)
T ss_pred hhCeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 457899998873 5555544 4888899998541 223444555555443 456666
Q ss_pred cccccccC-----CCcccEEEECC
Q 031325 103 CDIRNLEW-----RGHVDTVVMNP 121 (161)
Q Consensus 103 ~d~~~~~~-----~~~~D~i~~~~ 121 (161)
.+...+.. ...||+|++..
T Consensus 97 e~~~~ll~~~~~f~~~fdiVI~t~ 120 (425)
T cd01493 97 ESPEALLDNDPSFFSQFTVVIATN 120 (425)
T ss_pred cccchhhhhHHHHhcCCCEEEECC
Confidence 65543221 12799998743
No 432
>PRK06720 hypothetical protein; Provisional
Probab=83.77 E-value=11 Score=25.33 Aligned_cols=75 Identities=27% Similarity=0.299 Sum_probs=46.3
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-----------CCc
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----------RGH 113 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----------~~~ 113 (161)
++++++-.|.+.|. +...+++.|. +++.+|.++...+.+.+.+...+....++..|+.+... ...
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56677777776542 3334445554 89999988776665545444434355677788765321 125
Q ss_pred ccEEEECCCC
Q 031325 114 VDTVVMNPPF 123 (161)
Q Consensus 114 ~D~i~~~~p~ 123 (161)
.|+++.|...
T Consensus 94 iDilVnnAG~ 103 (169)
T PRK06720 94 IDMLFQNAGL 103 (169)
T ss_pred CCEEEECCCc
Confidence 7888887543
No 433
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.74 E-value=8.2 Score=28.10 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=44.5
Q ss_pred eEEEecCCc--chHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCCCCC
Q 031325 51 VVADFGCGC--GTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGTRKK 128 (161)
Q Consensus 51 ~vlD~g~G~--G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~~~~ 128 (161)
+|.=+|+|. |.++..+.+.+. +|+++|.++..++.+... +. +.....+. + .....|+|+..-|-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~-~~~~~~~~-~--~~~~aDlVilavp~----- 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL-VDEASTDL-S--LLKDCDLVILALPI----- 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC-cccccCCH-h--HhcCCCEEEEcCCH-----
Confidence 355567663 345555555555 899999999887766432 21 11111111 1 11257888876552
Q ss_pred CcchHHHHHHHhhcCCcEEEE
Q 031325 129 GVDMDFLSMALKVASQAVYSL 149 (161)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~ 149 (161)
....+.++.+...+++...++
T Consensus 68 ~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 68 GLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred HHHHHHHHHHHHhCCCCcEEE
Confidence 222345566655555433333
No 434
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.58 E-value=12 Score=25.92 Aligned_cols=72 Identities=25% Similarity=0.290 Sum_probs=45.2
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++-.|++ |.++..++ +.|. +|++++-++...+...+.+...+ ++.++.+|+.+.... .
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45788888875 44444444 3455 89999998877665544443322 567788888764311 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|.++.+..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 3588877654
No 435
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.47 E-value=12 Score=26.50 Aligned_cols=71 Identities=27% Similarity=0.293 Sum_probs=45.2
Q ss_pred CeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Ccc
Q 031325 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHV 114 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~ 114 (161)
.++|-.| |+|.++..+++ .+. +|++++.++...+...+.+...+.++.++.+|+.+...- ...
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3566555 55556665543 354 899999988776665555554444677888888764320 147
Q ss_pred cEEEECCC
Q 031325 115 DTVVMNPP 122 (161)
Q Consensus 115 D~i~~~~p 122 (161)
|+++.+.-
T Consensus 80 d~vi~~ag 87 (263)
T PRK06181 80 DILVNNAG 87 (263)
T ss_pred CEEEECCC
Confidence 89987653
No 436
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.46 E-value=10 Score=29.47 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=41.7
Q ss_pred EEEecCCcchHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC---C--CcccEEEECCC
Q 031325 52 VADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---R--GHVDTVVMNPP 122 (161)
Q Consensus 52 vlD~g~G~G~~~~~la~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~--~~~D~i~~~~p 122 (161)
++=+|+ |.++..+++. ....++.+|.+++.++.+++.. .+.++.+|..+... . ..+|.+++..+
T Consensus 3 viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 3 IIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-----DVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-----CEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 444554 7777777652 2348999999999877665422 36788888865321 1 16888887544
No 437
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.41 E-value=9.6 Score=24.53 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=39.2
Q ss_pred eEEEecCC-cch-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEccccc
Q 031325 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCDIRN 107 (161)
Q Consensus 51 ~vlD~g~G-~G~-~~~~la~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (161)
+|+=+||| .|. .+..|+..|..+++.+|.+. ...+.+++++++... ++.........
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 36778887 343 44455666877899998651 223444455554432 44445444433
Q ss_pred cc---CCCcccEEEEC
Q 031325 108 LE---WRGHVDTVVMN 120 (161)
Q Consensus 108 ~~---~~~~~D~i~~~ 120 (161)
.. ....+|+|+..
T Consensus 81 ~~~~~~~~~~diVi~~ 96 (143)
T cd01483 81 DNLDDFLDGVDLVIDA 96 (143)
T ss_pred hhHHHHhcCCCEEEEC
Confidence 21 11279999973
No 438
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.36 E-value=14 Score=26.22 Aligned_cols=73 Identities=25% Similarity=0.305 Sum_probs=44.7
Q ss_pred CCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.++++|=.|++.| ++.. +++.|. +++.++.++ ..+.+.+.+...+-++.++..|+.+.... .
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAGA-DIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5678888887655 3344 444555 888888773 33444444443333577888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|.++.+...
T Consensus 91 ~id~li~~ag~ 101 (258)
T PRK06935 91 KIDILVNNAGT 101 (258)
T ss_pred CCCEEEECCCC
Confidence 47999987653
No 439
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=83.32 E-value=10 Score=26.94 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=45.0
Q ss_pred eEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-----------CCccc
Q 031325 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----------RGHVD 115 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~D 115 (161)
++|-.|++. +++..++ +.|. +|+.++.++..++.+.+.+...+ ++.++..|+.+... ....|
T Consensus 2 ~vlItGas~-gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSR-GIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 456666554 4444444 4455 89999999887776666555433 56778888865421 12589
Q ss_pred EEEECCCC
Q 031325 116 TVVMNPPF 123 (161)
Q Consensus 116 ~i~~~~p~ 123 (161)
+++.+.-.
T Consensus 79 ~li~naG~ 86 (259)
T PRK08340 79 ALVWNAGN 86 (259)
T ss_pred EEEECCCC
Confidence 99987543
No 440
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.25 E-value=14 Score=27.69 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=57.6
Q ss_pred CeEEEecCCc--chHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh-------cCC-------ceEEEEcccccccCCCc
Q 031325 50 KVVADFGCGC--GTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------LEL-------DIDFVQCDIRNLEWRGH 113 (161)
Q Consensus 50 ~~vlD~g~G~--G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~-------~~~~~~~d~~~~~~~~~ 113 (161)
.+|.-+|+|+ ..++..++..|. +|+..|.+++.++.++..+.. .+. ++++. .+..+. -..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a--v~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC--VAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH--hcC
Confidence 5788888884 345555566666 999999999988776554331 221 11111 111111 125
Q ss_pred ccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCc
Q 031325 114 VDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 154 (161)
Q Consensus 114 ~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
.|+|+-+-|= +......++..+.+..++...+..++++
T Consensus 84 aDlViEavpE---~l~vK~~lf~~l~~~~~~~aIlaSnTS~ 121 (321)
T PRK07066 84 ADFIQESAPE---REALKLELHERISRAAKPDAIIASSTSG 121 (321)
T ss_pred CCEEEECCcC---CHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 7888876552 2233446778888888766655555554
No 441
>PRK05650 short chain dehydrogenase; Provisional
Probab=83.24 E-value=12 Score=26.68 Aligned_cols=71 Identities=23% Similarity=0.262 Sum_probs=45.3
Q ss_pred eEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Cccc
Q 031325 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHVD 115 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~D 115 (161)
+++-.|+ +|.++..++ +.|. +|+.++.++...+.+...+...+.++.++.+|+.+.... ..+|
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4565554 555555554 4455 888999888776666555555444677888888764321 1589
Q ss_pred EEEECCCC
Q 031325 116 TVVMNPPF 123 (161)
Q Consensus 116 ~i~~~~p~ 123 (161)
+++.+...
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 99987553
No 442
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.22 E-value=13 Score=27.36 Aligned_cols=76 Identities=24% Similarity=0.193 Sum_probs=46.1
Q ss_pred CCCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCC-hHHHHHHHHHHhhcCCceEEEEcccccccC----------CC
Q 031325 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNLEW----------RG 112 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----------~~ 112 (161)
.++++++=.|++.|. ++..+++.|. +|+..|.+ +...+.....+...+-++.++.+|+.+... ..
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 356788877776652 3444455565 88888874 334444444444444467788888876321 12
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.|.-.
T Consensus 89 ~iD~li~nAG~ 99 (306)
T PRK07792 89 GLDIVVNNAGI 99 (306)
T ss_pred CCCEEEECCCC
Confidence 57999987543
No 443
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.07 E-value=5.1 Score=27.81 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=42.1
Q ss_pred CCCeEEEecCCcchHHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC
Q 031325 48 SNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~----~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 110 (161)
++..|+++|.-.|+.+++.|.. | ..+|+++|++=..+.-+.... -++.++.++..+...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~----p~i~f~egss~dpai 132 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV----PDILFIEGSSTDPAI 132 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC----CCeEEEeCCCCCHHH
Confidence 6789999999999988888763 3 249999999855543322211 168899998877643
No 444
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.99 E-value=14 Score=25.99 Aligned_cols=74 Identities=26% Similarity=0.273 Sum_probs=48.8
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
+++++|=.| |+|.++..+++ .|. ++++++.++...+.....+...+.++.++.+|+.+...- .
T Consensus 3 ~~~~vlItG-~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVTG-AASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 345666555 56666776665 344 899999988877766655555455678888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 47999886543
No 445
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=82.73 E-value=0.98 Score=34.62 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=14.8
Q ss_pred CCeEEEecCCcchHHHHH
Q 031325 49 NKVVADFGCGCGTLGAAA 66 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~l 66 (161)
..+|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 458999999999777655
No 446
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.47 E-value=9.1 Score=28.20 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=42.7
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCCC----cccEE
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG----HVDTV 117 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~----~~D~i 117 (161)
.++++|-.| |+|.++..+++ .|. +|+++..++.............+. ++.++.+|+.+..... ..|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 356777666 66777776665 344 777776665443332222221121 5788889998754321 57988
Q ss_pred EECCC
Q 031325 118 VMNPP 122 (161)
Q Consensus 118 ~~~~p 122 (161)
+.+..
T Consensus 82 ih~A~ 86 (325)
T PLN02989 82 FHTAS 86 (325)
T ss_pred EEeCC
Confidence 87654
No 447
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.47 E-value=14 Score=25.73 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=48.1
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+.+++-.|+ +|.++..+++ .|. +|+.++.++...+.....+...+.++.++..|+.+...- .
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567777774 6666666554 465 899999987766555444444444677888888665321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 47999987543
No 448
>PRK06914 short chain dehydrogenase; Provisional
Probab=82.41 E-value=14 Score=26.46 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=44.7
Q ss_pred CCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCC--ceEEEEcccccccCC----------C
Q 031325 49 NKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR----------G 112 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~----------~ 112 (161)
+.++|-.|++ |.++..+ ++.|. +|++++-++...+.........+. ++.++.+|+.+.... .
T Consensus 3 ~k~~lItGas-g~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGAS-SGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 3456666654 4444444 44455 899998887766655544443332 578888888774321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 81 ~id~vv~~ag~ 91 (280)
T PRK06914 81 RIDLLVNNAGY 91 (280)
T ss_pred CeeEEEECCcc
Confidence 56888887543
No 449
>PRK05855 short chain dehydrogenase; Validated
Probab=82.32 E-value=12 Score=29.80 Aligned_cols=74 Identities=27% Similarity=0.276 Sum_probs=49.5
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+.++|=.|+ +|.++..++ +.|. +|+.++.++...+.....+...+.++.++.+|+.+...- +
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3456776665 555555554 4455 799999998877766666655555678889999875421 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.|.-.
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 47999987654
No 450
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=82.11 E-value=14 Score=25.58 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=47.4
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++.++|=.|+ +|.++..+++ +|. +|++++-++...+.....+...+.++.++.+|+.+.... .
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3457786665 6766666654 455 799999888776665555554444677888888764321 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|.++.+..
T Consensus 82 ~id~vi~~ag 91 (246)
T PRK05653 82 ALDILVNNAG 91 (246)
T ss_pred CCCEEEECCC
Confidence 4588887654
No 451
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.04 E-value=21 Score=27.39 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=51.8
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCC-------------------hHHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDID-------------------SDSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~-------------------~~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
...+|+=+|||. |. .+..|+..|..+++.+|-+ ....+.+++++.+... +++.+...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 567899999994 32 4555666788899999976 2234555555554432 45555444
Q ss_pred cccccC---CCcccEEEECCCCCCCCCCcchHHHHHHHhhcC
Q 031325 105 IRNLEW---RGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 143 (161)
Q Consensus 105 ~~~~~~---~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 143 (161)
+..... ...+|+|+...- ......++..+.....
T Consensus 120 i~~~~~~~~~~~~DlVid~~D-----n~~~r~~in~~~~~~~ 156 (370)
T PRK05600 120 LTAENAVELLNGVDLVLDGSD-----SFATKFLVADAAEITG 156 (370)
T ss_pred cCHHHHHHHHhCCCEEEECCC-----CHHHHHHHHHHHHHcC
Confidence 432111 126999985222 1122345566555544
No 452
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.90 E-value=0.11 Score=34.47 Aligned_cols=46 Identities=7% Similarity=-0.085 Sum_probs=39.1
Q ss_pred cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEeccCccccc
Q 031325 113 HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREVS 158 (161)
Q Consensus 113 ~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (161)
+.|+|++.-.+.|+...+...+++.+.++|++++++-+.....+|.
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 8999999888888888888899999999999888888866555554
No 453
>PRK08267 short chain dehydrogenase; Provisional
Probab=81.90 E-value=11 Score=26.60 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=43.9
Q ss_pred eEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC------------CCcc
Q 031325 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW------------RGHV 114 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~------------~~~~ 114 (161)
++|-.|++ |.++..++ +.|. +|+.++.++..++.....+. +.++.++.+|+.+... ....
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 46666655 44555544 4454 89999998877766555443 2357888888876432 1146
Q ss_pred cEEEECCCC
Q 031325 115 DTVVMNPPF 123 (161)
Q Consensus 115 D~i~~~~p~ 123 (161)
|+++.+...
T Consensus 79 d~vi~~ag~ 87 (260)
T PRK08267 79 DVLFNNAGI 87 (260)
T ss_pred CEEEECCCC
Confidence 999987654
No 454
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.81 E-value=13 Score=26.39 Aligned_cols=72 Identities=22% Similarity=0.423 Sum_probs=43.4
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++-.|++.| ++..++ +.|. +|+.++.++. +...+.++..+.++.++..|+.+...- +
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTG-LGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 5678887776554 444444 4455 7887776432 223333344444677888888765321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+.-.
T Consensus 83 ~iD~lv~~ag~ 93 (251)
T PRK12481 83 HIDILINNAGI 93 (251)
T ss_pred CCCEEEECCCc
Confidence 57999987654
No 455
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.63 E-value=16 Score=26.58 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=44.6
Q ss_pred CCCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCCh-HHHHHHHHHHhhcCCceEEEEcccccccCC----------
Q 031325 47 VSNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNLEWR---------- 111 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---------- 111 (161)
.+++++|-.|++.| ++.. +++.|. +|+.++.++ ...+.....++..+.++.++.+|+.+....
T Consensus 44 ~~~k~iLItGasgg-IG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 44 LKGKVALITGGDSG-IGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35677888876544 4444 444555 888887764 333333344444444677888888764321
Q ss_pred -CcccEEEECCCC
Q 031325 112 -GHVDTVVMNPPF 123 (161)
Q Consensus 112 -~~~D~i~~~~p~ 123 (161)
...|+++.+...
T Consensus 122 ~~~iD~lI~~Ag~ 134 (290)
T PRK06701 122 LGRLDILVNNAAF 134 (290)
T ss_pred cCCCCEEEECCcc
Confidence 147999877553
No 456
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.40 E-value=17 Score=26.78 Aligned_cols=77 Identities=26% Similarity=0.314 Sum_probs=54.0
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCC-c-eEEEEcccccccCC-----------
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-D-IDFVQCDIRNLEWR----------- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~~~~----------- 111 (161)
.+++|+=-||.+|. ++..++++|. +++-+-...+.++...+.++..+- + +..++.|+.+....
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 67889999999883 6666777776 666666666777666444444433 4 88999999886431
Q ss_pred CcccEEEECCCCCC
Q 031325 112 GHVDTVVMNPPFGT 125 (161)
Q Consensus 112 ~~~D~i~~~~p~~~ 125 (161)
+..|+.+.|.-+..
T Consensus 90 g~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL 103 (282)
T ss_pred CCCCEEEecCcccc
Confidence 26799999866544
No 457
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.28 E-value=11 Score=27.61 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCeEEEecCC-cchHH-HHHHHcCCCeEEEEeCC
Q 031325 48 SNKVVADFGCG-CGTLG-AAATLLGADQVIAIDID 80 (161)
Q Consensus 48 ~~~~vlD~g~G-~G~~~-~~la~~~~~~v~~~D~~ 80 (161)
.+.+|+=+||| .|... ..|++.|..+++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 56789999999 45544 44566687899999976
No 458
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=81.26 E-value=12 Score=24.20 Aligned_cols=72 Identities=22% Similarity=0.377 Sum_probs=40.5
Q ss_pred CCCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCC
Q 031325 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPP 122 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p 122 (161)
.++.+++-+|+| ..+..++ +.+...++.+|.++...+...+...... +.....|..+. ....|+|++.-|
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~Dvvi~~~~ 90 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEEL--LAEADLIINTTP 90 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhc--cccCCEEEeCcC
Confidence 456789999986 3444443 3344589999999877665444433211 11112222221 126899987655
Q ss_pred CC
Q 031325 123 FG 124 (161)
Q Consensus 123 ~~ 124 (161)
-.
T Consensus 91 ~~ 92 (155)
T cd01065 91 VG 92 (155)
T ss_pred CC
Confidence 43
No 459
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=81.19 E-value=15 Score=25.73 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCC-ceEEEEcccccccC-----------
Q 031325 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW----------- 110 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----------- 110 (161)
.++++++=.|+ +|.++..++ +.|. +|++++.++...+.....+...+. ++.++..|+.....
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 36678888885 555555544 4455 999999988776666555554433 56667777743211
Q ss_pred --CCcccEEEECCC
Q 031325 111 --RGHVDTVVMNPP 122 (161)
Q Consensus 111 --~~~~D~i~~~~p 122 (161)
....|.++.+..
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 015799988653
No 460
>PRK12829 short chain dehydrogenase; Provisional
Probab=80.79 E-value=17 Score=25.63 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=46.4
Q ss_pred CCCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------
Q 031325 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (161)
Q Consensus 47 ~~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 111 (161)
.++.++|-.|++ |.++..+++ .|. +|++++.++...+...+..... ++.++.+|+.+...-
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA--KVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 367788877765 555555544 455 8999999887665544433221 467788888764321
Q ss_pred CcccEEEECCCC
Q 031325 112 GHVDTVVMNPPF 123 (161)
Q Consensus 112 ~~~D~i~~~~p~ 123 (161)
..+|+|+.+...
T Consensus 85 ~~~d~vi~~ag~ 96 (264)
T PRK12829 85 GGLDVLVNNAGI 96 (264)
T ss_pred CCCCEEEECCCC
Confidence 157999976543
No 461
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.70 E-value=10 Score=25.01 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=47.5
Q ss_pred EEEecCCcchHHHH--HHHcCCCeEEEEeCChHHHHHHHHHHhhcC----C----ceEEEEcccccccCCCcccEEEECC
Q 031325 52 VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASENAADLE----L----DIDFVQCDIRNLEWRGHVDTVVMNP 121 (161)
Q Consensus 52 vlD~g~G~G~~~~~--la~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~----~~~~~~~d~~~~~~~~~~D~i~~~~ 121 (161)
|.=+|+|.++.+.. ++..+ .+|+-...+++.++..++.-.... . ++. ...|..+.. ...|+|+..-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~a~--~~ad~Iiiav 77 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTDLEEAL--EDADIIIIAV 77 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESSHHHHH--TT-SEEEE-S
T ss_pred EEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccCHHHHh--CcccEEEecc
Confidence 55678887765444 44555 499999999988877765433111 1 122 223332221 1578888765
Q ss_pred CCCCCCCCcchHHHHHHHhhcCCc
Q 031325 122 PFGTRKKGVDMDFLSMALKVASQA 145 (161)
Q Consensus 122 p~~~~~~~~~~~~~~~~~~~~~~~ 145 (161)
| ......+++.+...++..
T Consensus 78 P-----s~~~~~~~~~l~~~l~~~ 96 (157)
T PF01210_consen 78 P-----SQAHREVLEQLAPYLKKG 96 (157)
T ss_dssp ------GGGHHHHHHHHTTTSHTT
T ss_pred c-----HHHHHHHHHHHhhccCCC
Confidence 5 122347788888777643
No 462
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=80.55 E-value=17 Score=25.49 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=45.1
Q ss_pred eEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------Cccc
Q 031325 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------GHVD 115 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~D 115 (161)
+++=.|+ +|.++..++ +.|. +++.++.++...+...+.+...+.++.++.+|+.+...- ...|
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3555564 555555554 4455 899998887766655555555455678888998764321 1469
Q ss_pred EEEECCCC
Q 031325 116 TVVMNPPF 123 (161)
Q Consensus 116 ~i~~~~p~ 123 (161)
+++.+...
T Consensus 80 ~vi~~ag~ 87 (254)
T TIGR02415 80 VMVNNAGV 87 (254)
T ss_pred EEEECCCc
Confidence 99887654
No 463
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.45 E-value=5.9 Score=29.60 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCCCCeEEEecCCcch-HHHHHHHc--CCCeEEEEeCChHHHHHHHH
Q 031325 46 DVSNKVVADFGCGCGT-LGAAATLL--GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 46 ~~~~~~vlD~g~G~G~-~~~~la~~--~~~~v~~~D~~~~~~~~a~~ 89 (161)
..++++|+-.|||.=+ +++.+++. +..+++++|.++..++.+++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 3468899999976322 33444542 45589999999988888764
No 464
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=80.23 E-value=20 Score=26.13 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=56.5
Q ss_pred CCCeEEEecCCcch---HHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh-cCCceEEEEcccccccCC---------C--
Q 031325 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD-LELDIDFVQCDIRNLEWR---------G-- 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~---~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~---------~-- 112 (161)
.+.+++=-|+.+|. ++..+|++|. +++.+--+.+.++...+.++. .++.+.++..|+.+.... .
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 45677777777662 4455566666 899999998887777666654 456889999998876431 1
Q ss_pred cccEEEECCCCCCCC
Q 031325 113 HVDTVVMNPPFGTRK 127 (161)
Q Consensus 113 ~~D~i~~~~p~~~~~ 127 (161)
..|+.+.|.-|+...
T Consensus 84 ~IdvLVNNAG~g~~g 98 (265)
T COG0300 84 PIDVLVNNAGFGTFG 98 (265)
T ss_pred cccEEEECCCcCCcc
Confidence 589999988777653
No 465
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.14 E-value=15 Score=26.55 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=43.7
Q ss_pred CCCeEEEecCCc-chHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------
Q 031325 48 SNKVVADFGCGC-GTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR----------- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 111 (161)
.++++|=.|+++ ++++..++ +.|. +|+.++.++...+.+++.....+.. .++..|+.+...-
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 467888888863 44555554 4455 8888888754333333332222323 4677888765321
Q ss_pred CcccEEEECCCC
Q 031325 112 GHVDTVVMNPPF 123 (161)
Q Consensus 112 ~~~D~i~~~~p~ 123 (161)
...|+++.|.-+
T Consensus 82 g~iDilVnnAG~ 93 (274)
T PRK08415 82 GKIDFIVHSVAF 93 (274)
T ss_pred CCCCEEEECCcc
Confidence 267999988654
No 466
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=80.11 E-value=3.3 Score=30.76 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=62.1
Q ss_pred CeEEEecCCcchHHHHHHHcC-------C--------------CeEEEEeCChHH--HHHHHHHHhhc------------
Q 031325 50 KVVADFGCGCGTLGAAATLLG-------A--------------DQVIAIDIDSDS--LELASENAADL------------ 94 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~~~-------~--------------~~v~~~D~~~~~--~~~a~~~~~~~------------ 94 (161)
.+||-||.|-|.-.+.++..- . -+++.+|+.+-. +......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 589999999987666654310 0 289999998543 44444433322
Q ss_pred ------CCceEEEEcccccccCCC--------cccEEEE----CCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 95 ------ELDIDFVQCDIRNLEWRG--------HVDTVVM----NPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 95 ------~~~~~~~~~d~~~~~~~~--------~~D~i~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
.+++.|.+.|+..+...+ ..++|.. |-=|.. ......+++..+-...+++-+++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~-s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST-SISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHhhcCCCcEEEE
Confidence 126889999998876632 1344432 111222 355566889999988886555554
No 467
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=80.09 E-value=8.1 Score=30.41 Aligned_cols=74 Identities=23% Similarity=0.148 Sum_probs=46.1
Q ss_pred CCCeEEEecCCcchHH--HHHHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCCC
Q 031325 48 SNKVVADFGCGCGTLG--AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFGT 125 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~--~~la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~~ 125 (161)
.+++|+-+|-|-.+.+ ..+.+.| ..|+..|.++.......+..... .+.+..+.... .....+|+|+.+|-...
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~~~--~i~~~~g~~~~-~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLLLE--GIEVELGSHDD-EDLAEFDLVVKSPGIPP 81 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCccchhhhhhhcc--CceeecCccch-hccccCCEEEECCCCCC
Confidence 3678999998855433 3345556 49999998887732222221122 46677776555 22237999999987544
No 468
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.84 E-value=12 Score=29.66 Aligned_cols=69 Identities=23% Similarity=0.197 Sum_probs=41.4
Q ss_pred CCCeEEEecCCcchHHHH--HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCCCcccEEEECCCCC
Q 031325 48 SNKVVADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGHVDTVVMNPPFG 124 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~--la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~p~~ 124 (161)
.+++++=+|.|.-+.+.. +...|. .|++.|..+..++. ++..| +.+..++..... -..+|+|+.+|...
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~----l~~~g--~~~~~~~~~~~~-l~~~D~VV~SpGi~ 81 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRP----HAERG--VATVSTSDAVQQ-IADYALVVTSPGFR 81 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH----HHhCC--CEEEcCcchHhH-hhcCCEEEECCCCC
Confidence 577899999996655444 444565 99999977654432 23334 344433221111 12589999988654
No 469
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=79.83 E-value=11 Score=27.25 Aligned_cols=45 Identities=40% Similarity=0.505 Sum_probs=29.8
Q ss_pred CCCCCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 031325 45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~ 89 (161)
...++.+|+-.|+|. |..+..+++. |..+++++|.++...+.+++
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 344778888887642 2333444544 55469999999988877755
No 470
>PRK06153 hypothetical protein; Provisional
Probab=79.77 E-value=11 Score=29.14 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.6
Q ss_pred CCCeEEEecCC-cch-HHHHHHHcCCCeEEEEeCC
Q 031325 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (161)
Q Consensus 48 ~~~~vlD~g~G-~G~-~~~~la~~~~~~v~~~D~~ 80 (161)
.+.+|+=+||| +|+ .+..|++.|..+++.+|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 56789999998 454 5555777788899999866
No 471
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=79.65 E-value=2.9 Score=31.43 Aligned_cols=79 Identities=15% Similarity=0.034 Sum_probs=40.1
Q ss_pred CCCeEEEecCCcchHHHHHHHc----------CC-------CeEEEEeCChHHHHHHHHHH-------hhcC-CceEEEE
Q 031325 48 SNKVVADFGCGCGTLGAAATLL----------GA-------DQVIAIDIDSDSLELASENA-------ADLE-LDIDFVQ 102 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~----------~~-------~~v~~~D~~~~~~~~a~~~~-------~~~~-~~~~~~~ 102 (161)
..-+|+|+||.+|..++.+... .. -+|+.-|+-.+-....=+.+ ...+ +-+.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4468999999999988876531 11 27888886433322211111 1111 1234455
Q ss_pred cccccc-cCCCcccEEEECCCCCCC
Q 031325 103 CDIRNL-EWRGHVDTVVMNPPFGTR 126 (161)
Q Consensus 103 ~d~~~~-~~~~~~D~i~~~~p~~~~ 126 (161)
+....- .+..+.|++++...+||+
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-
T ss_pred chhhhccCCCCceEEEEEechhhhc
Confidence 666553 333489999998888876
No 472
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.63 E-value=7.2 Score=28.60 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=55.0
Q ss_pred CeEEEecCCc--chHHHHHHHcCCCeEEEEeCChHHHHHHHHHHhh-------cCC-----------ceEEEEccccccc
Q 031325 50 KVVADFGCGC--GTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------LEL-----------DIDFVQCDIRNLE 109 (161)
Q Consensus 50 ~~vlD~g~G~--G~~~~~la~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~-----------~~~~~~~d~~~~~ 109 (161)
.+|--+|+|+ +.++..++..|. .|+..|.+++.++.++.++.. .|. +++ ...|....
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh-
Confidence 3788888884 345555566565 999999999999887765432 111 111 12222111
Q ss_pred CCCcccEEEECCCCCCCCCCcchHHHHHHHhhc-CCcEEEEeccCc
Q 031325 110 WRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA-SQAVYSLHKTST 154 (161)
Q Consensus 110 ~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 154 (161)
...|+|+-.-|= +.......+..+.... ++...+.-++++
T Consensus 83 --~~~d~ViEav~E---~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 --ADRQLVIEAVVE---DEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred --CCCCEEEEeccc---CHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 257888865441 2233345666666665 544455555444
No 473
>PRK07877 hypothetical protein; Provisional
Probab=79.62 E-value=17 Score=30.58 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=45.5
Q ss_pred CCCeEEEecCCcchH-HHHHHHcCC-CeEEEEeCCh------------------HHHHHHHHHHhhcCC--ceEEEEccc
Q 031325 48 SNKVVADFGCGCGTL-GAAATLLGA-DQVIAIDIDS------------------DSLELASENAADLEL--DIDFVQCDI 105 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~-~~~la~~~~-~~v~~~D~~~------------------~~~~~a~~~~~~~~~--~~~~~~~d~ 105 (161)
...+|+-+|||-|+. +..|+..|. ++++.+|.+. ..++.+++.+.+.+- ++..+...+
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 567999999998874 444566674 7888888552 224455555554433 566666655
Q ss_pred ccccCC---CcccEEEE
Q 031325 106 RNLEWR---GHVDTVVM 119 (161)
Q Consensus 106 ~~~~~~---~~~D~i~~ 119 (161)
...... ..+|+|+.
T Consensus 186 ~~~n~~~~l~~~DlVvD 202 (722)
T PRK07877 186 TEDNVDAFLDGLDVVVE 202 (722)
T ss_pred CHHHHHHHhcCCCEEEE
Confidence 432221 26899986
No 474
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.60 E-value=18 Score=25.27 Aligned_cols=73 Identities=27% Similarity=0.313 Sum_probs=46.0
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++=.||. |.++..++ +.|. +++.++-++.........+. .+.++.++.+|+.+...- .
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45677777774 44555444 4454 89999888766655444443 233578888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 81 ~id~vi~~ag~ 91 (252)
T PRK06138 81 RLDVLVNNAGF 91 (252)
T ss_pred CCCEEEECCCC
Confidence 57999886554
No 475
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.52 E-value=7.1 Score=29.24 Aligned_cols=44 Identities=34% Similarity=0.480 Sum_probs=32.0
Q ss_pred CCCCCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 031325 45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~ 89 (161)
...++.+|+-.|+|. |..++.+++. |. ++++++.++..++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 445688999999854 4455555654 55 79999999998887754
No 476
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=79.52 E-value=12 Score=24.83 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHc-CCCeEEEEeCC
Q 031325 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDID 80 (161)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~-~~~~v~~~D~~ 80 (161)
.+..++.+.......+ .-|+|+|-|+|+.--.|-+. +...++.+|-.
T Consensus 14 QR~~L~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 14 QRDCLNWAAAQVAGLP-GPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHHHhcCCC-CceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 3445555555555555 46999999999988777765 55699999953
No 477
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=79.49 E-value=2.1 Score=31.89 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=23.7
Q ss_pred cccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEEEe
Q 031325 113 HVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 150 (161)
Q Consensus 113 ~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (161)
..|+|+.||||+..+ +++..+.+.-+..+.+..
T Consensus 135 eADIVVTNPPFSLFr-----Eyv~~Li~~~KkFlIIGN 167 (336)
T PF13651_consen 135 EADIVVTNPPFSLFR-----EYVAQLIEYDKKFLIIGN 167 (336)
T ss_pred cCCEEEeCCCcHHHH-----HHHHHHHHhCCCEEEEec
Confidence 689999999997543 677777777665444443
No 478
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.41 E-value=23 Score=26.17 Aligned_cols=40 Identities=30% Similarity=0.302 Sum_probs=28.3
Q ss_pred CeEEEecCCcc--hHHHHHHHcCCCeEEEEeCChHHHHHHHHH
Q 031325 50 KVVADFGCGCG--TLGAAATLLGADQVIAIDIDSDSLELASEN 90 (161)
Q Consensus 50 ~~vlD~g~G~G--~~~~~la~~~~~~v~~~D~~~~~~~~a~~~ 90 (161)
.+|.=+|+|.= .++..+++.+. +|+++|.+++.++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 46777888743 34444555555 899999999998887764
No 479
>PRK08251 short chain dehydrogenase; Provisional
Probab=79.37 E-value=19 Score=25.22 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=46.6
Q ss_pred CeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhc--CCceEEEEcccccccCC-----------C
Q 031325 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 50 ~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++-.| |+|.++..+++ .+. +++.++.++...+.....+... +.++.++.+|+.+...- .
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4567666 56666666554 354 8999998887776655544432 33678888998875321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+.-+
T Consensus 81 ~id~vi~~ag~ 91 (248)
T PRK08251 81 GLDRVIVNAGI 91 (248)
T ss_pred CCCEEEECCCc
Confidence 57899887643
No 480
>PRK07201 short chain dehydrogenase; Provisional
Probab=79.21 E-value=18 Score=29.60 Aligned_cols=74 Identities=24% Similarity=0.298 Sum_probs=48.7
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+++++-.|+ +|.++..+++ .|. +|+.++.++..++.....+...+.++.++.+|+.+...- .
T Consensus 370 ~~k~vlItGa-s~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 370 VGKVVLITGA-SSGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 3556666555 4555555544 455 899999988877766655554444678888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+.-.
T Consensus 448 ~id~li~~Ag~ 458 (657)
T PRK07201 448 HVDYLVNNAGR 458 (657)
T ss_pred CCCEEEECCCC
Confidence 47999987764
No 481
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=79.05 E-value=20 Score=25.33 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=43.1
Q ss_pred CCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
+++++|-.|++.| ++.. +++.|. +|+.++.++... .....+...+.++.++..|+.+.... .
T Consensus 7 ~~k~vlVtGas~g-IG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQG-IGRGVALRAAAEGA-RVVLVDRSELVH-EVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCchHHH-HHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 4667777776544 4444 444555 888999876432 33333433344567788888764210 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.|..
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 5799988763
No 482
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.97 E-value=19 Score=25.65 Aligned_cols=71 Identities=28% Similarity=0.298 Sum_probs=44.1
Q ss_pred CCCeEEEecCCcchHHHHH----HHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~l----a~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++-.|++. .++..+ ++.|. +|+.++.++...+...+.+ +-++.++.+|+.+...- .
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGAT-LIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 456777777544 444444 44455 8999998876554443332 22577888888765321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+...
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 57999887653
No 483
>PLN02740 Alcohol dehydrogenase-like
Probab=78.85 E-value=9.8 Score=28.93 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=31.0
Q ss_pred cCCCCCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 031325 44 FGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 44 ~~~~~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~ 89 (161)
....++++||-.|+|. |..++.+++. |..+|+++|.++..++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3455788898888642 2333444544 55479999999998888754
No 484
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=78.79 E-value=11 Score=28.74 Aligned_cols=68 Identities=26% Similarity=0.402 Sum_probs=40.0
Q ss_pred EEEecCCcchHHHHHHH----cCC-CeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-C---CcccEEEE-CC
Q 031325 52 VADFGCGCGTLGAAATL----LGA-DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-R---GHVDTVVM-NP 121 (161)
Q Consensus 52 vlD~g~G~G~~~~~la~----~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~---~~~D~i~~-~~ 121 (161)
|+=+|+ |..+..+++ .+. .+++..|.+.+.++.....+ .+.++.....|+.+... . ...|+|+. -|
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELLRGCDVVINCAG 76 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHHhcCCEEEECCc
Confidence 456777 555555443 332 28999999998877654433 23378999999887543 1 26799994 56
Q ss_pred CC
Q 031325 122 PF 123 (161)
Q Consensus 122 p~ 123 (161)
||
T Consensus 77 p~ 78 (386)
T PF03435_consen 77 PF 78 (386)
T ss_dssp GG
T ss_pred cc
Confidence 65
No 485
>PRK14852 hypothetical protein; Provisional
Probab=78.64 E-value=22 Score=30.99 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCCeEEEecCC-cch-HHHHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHhhcCC--ceEEEEcc
Q 031325 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G-~G~-~~~~la~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d 104 (161)
...+|+-+||| .|. .+..++..|.++++.+|-+. ..++.+++.+.+.+. +++.+...
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 56789999999 565 66667877888888888552 224555556654433 55666554
Q ss_pred cccccCC---CcccEEEE
Q 031325 105 IRNLEWR---GHVDTVVM 119 (161)
Q Consensus 105 ~~~~~~~---~~~D~i~~ 119 (161)
+...... ..+|+|+.
T Consensus 411 I~~en~~~fl~~~DiVVD 428 (989)
T PRK14852 411 VAAETIDAFLKDVDLLVD 428 (989)
T ss_pred CCHHHHHHHhhCCCEEEE
Confidence 4332211 27999996
No 486
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=78.56 E-value=4.3 Score=32.14 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=46.1
Q ss_pred CCCeEEEecCCc-ch-HHHHHHHcCCCeEEEEeCChHH-------------------HHHHHHHHhhcC--CceEEEEcc
Q 031325 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDSDS-------------------LELASENAADLE--LDIDFVQCD 104 (161)
Q Consensus 48 ~~~~vlD~g~G~-G~-~~~~la~~~~~~v~~~D~~~~~-------------------~~~a~~~~~~~~--~~~~~~~~d 104 (161)
.+.+||-+|||. |. ++.-|+..|..+++.+|++.-- ...|.+..+... +++.+.+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 567999999974 33 4444555688899999976322 223333333332 367889999
Q ss_pred cccccCC----CcccEEEE
Q 031325 105 IRNLEWR----GHVDTVVM 119 (161)
Q Consensus 105 ~~~~~~~----~~~D~i~~ 119 (161)
+.+.... ++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 9887432 26888775
No 487
>PRK08628 short chain dehydrogenase; Provisional
Probab=78.44 E-value=20 Score=25.28 Aligned_cols=73 Identities=29% Similarity=0.332 Sum_probs=44.7
Q ss_pred CCCeEEEecCCcchHHHHHH----HcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++.++|=.|++ |.++..++ +.|. .++.++.++...+.. ..+...+.++.++..|+.+...- .
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGA-IPVIFGRSAPDDEFA-EELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC-cEEEEcCChhhHHHH-HHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 56677777754 44555554 4455 788888777665333 33333344678888888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|.++.+...
T Consensus 83 ~id~vi~~ag~ 93 (258)
T PRK08628 83 RIDGLVNNAGV 93 (258)
T ss_pred CCCEEEECCcc
Confidence 47999887653
No 488
>PRK07326 short chain dehydrogenase; Provisional
Probab=78.29 E-value=20 Score=24.87 Aligned_cols=71 Identities=23% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.+.+++-.|+ +|.++..+++ .+. +|++++.++.........+... .++.++.+|+.+.... .
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3567887774 6666666554 355 8999998887666554444332 2577888888754321 1
Q ss_pred cccEEEECC
Q 031325 113 HVDTVVMNP 121 (161)
Q Consensus 113 ~~D~i~~~~ 121 (161)
.+|+++.+.
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 578888764
No 489
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.04 E-value=1.2 Score=32.29 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=31.9
Q ss_pred EEcccccccCCCcccEEEECCCCCCCCCCcchHHHHHHHhhcCCcEEE
Q 031325 101 VQCDIRNLEWRGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYS 148 (161)
Q Consensus 101 ~~~d~~~~~~~~~~D~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (161)
.+.|+..+...-++|+++.+|||....-+..=..++.+.+.-++....
T Consensus 191 ~qeDaN~LikkI~~DilYLDpPYN~rqYs~nYhLLe~IA~y~kP~~~g 238 (330)
T COG3392 191 YQEDANELIKKISGDILYLDPPYNARQYSANYHLLETIARYEKPEPKG 238 (330)
T ss_pred HHhhHHHHHHhcCCCEEEeCCCccccccchHHHHHHHHHhcCCccccc
Confidence 344444443323789999999998776565557778887777654433
No 490
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=78.02 E-value=18 Score=25.65 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=44.9
Q ss_pred CCCeEEEecCCcchHHHH----HHHcCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~----la~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
++++++-.|++.| ++.. +++.|. +|+.++.++..++...+.. +-++.++..|+.+.... .
T Consensus 5 ~~k~vlVtGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 5 HGQVALITGGGSG-IGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5677888886554 4444 444455 8999999887765544332 22467788888764321 1
Q ss_pred cccEEEECCCC
Q 031325 113 HVDTVVMNPPF 123 (161)
Q Consensus 113 ~~D~i~~~~p~ 123 (161)
..|+++.+..+
T Consensus 80 ~id~li~~ag~ 90 (263)
T PRK06200 80 KLDCFVGNAGI 90 (263)
T ss_pred CCCEEEECCCC
Confidence 57999987654
No 491
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=77.98 E-value=15 Score=26.87 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=41.0
Q ss_pred CCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcC--CceEEEEcccccccCC----CcccEEE
Q 031325 49 NKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWR----GHVDTVV 118 (161)
Q Consensus 49 ~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~----~~~D~i~ 118 (161)
+.+||=.| |+|.++..+++ .|. +|++++.++.............+ .++.++.+|+.+.... ..+|+|+
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGY-TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 45666555 46777666654 354 88887766543222222111111 1578899999875421 1579888
Q ss_pred ECCC
Q 031325 119 MNPP 122 (161)
Q Consensus 119 ~~~p 122 (161)
....
T Consensus 82 h~A~ 85 (322)
T PLN02662 82 HTAS 85 (322)
T ss_pred EeCC
Confidence 6543
No 492
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.89 E-value=13 Score=30.10 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=57.8
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhc-C-CceEEEEcccccccCC-----C-ccc
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADL-E-LDIDFVQCDIRNLEWR-----G-HVD 115 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~-~-~~~~~~~~d~~~~~~~-----~-~~D 115 (161)
.+++||--| |+|+++.++.+ .+..+++-.|.++..+....+.+... + .++.++.+|+.+...- + +.|
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 566666554 66777777655 36679999999999998888877763 3 3789999999886431 2 699
Q ss_pred EEEECCCCCCC
Q 031325 116 TVVMNPPFGTR 126 (161)
Q Consensus 116 ~i~~~~p~~~~ 126 (161)
+|+....+-|.
T Consensus 328 ~VfHAAA~KHV 338 (588)
T COG1086 328 IVFHAAALKHV 338 (588)
T ss_pred eEEEhhhhccC
Confidence 99987666554
No 493
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=77.80 E-value=14 Score=25.90 Aligned_cols=43 Identities=33% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCCCeEEEecCCc-chHHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 031325 47 VSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 47 ~~~~~vlD~g~G~-G~~~~~la~~~~~~v~~~D~~~~~~~~a~~ 89 (161)
.++.+|+..|+|+ |.....+++....++++++.++...+.++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 5778999999986 556666666533599999999887776644
No 494
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=77.74 E-value=21 Score=24.96 Aligned_cols=70 Identities=24% Similarity=0.304 Sum_probs=45.4
Q ss_pred eEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccC-----------CCccc
Q 031325 51 VVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----------RGHVD 115 (161)
Q Consensus 51 ~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~D 115 (161)
++|=.| |+|.++..+++ .|. +|++++.++...+.....+...+.++.++.+|+.+... ....|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455555 55666666654 355 89999998877666655554444467888888877541 01478
Q ss_pred EEEECCC
Q 031325 116 TVVMNPP 122 (161)
Q Consensus 116 ~i~~~~p 122 (161)
.++.+..
T Consensus 81 ~vi~~a~ 87 (255)
T TIGR01963 81 ILVNNAG 87 (255)
T ss_pred EEEECCC
Confidence 8887654
No 495
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.73 E-value=24 Score=25.63 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=48.4
Q ss_pred CCCeEEEecCCcchHHHHHHHc-C--CCeEEEEeCChHHHHHHH------HHHh---hcCCceEEEEcccccccCC----
Q 031325 48 SNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELAS------ENAA---DLELDIDFVQCDIRNLEWR---- 111 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~~-~--~~~v~~~D~~~~~~~~a~------~~~~---~~~~~~~~~~~d~~~~~~~---- 111 (161)
+..+|+.+|-|.=.++..++.+ | ...++++.++..-.++.+ .++. ..|. ..+...|++.+...
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~-~I~h~Vdv~sl~~~~~~~ 134 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGG-TILHGVDVTSLKFHADLR 134 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCC-ceEecccceeEEeccccc
Confidence 4568999988888888888875 3 457777777655533332 2332 3331 23444466665442
Q ss_pred -CcccEEEECCCCCC
Q 031325 112 -GHVDTVVMNPPFGT 125 (161)
Q Consensus 112 -~~~D~i~~~~p~~~ 125 (161)
..||-||+|.|+.-
T Consensus 135 ~~~~d~IiFNFPH~G 149 (282)
T KOG4174|consen 135 LQRYDNIIFNFPHSG 149 (282)
T ss_pred ccccceEEEcCCCCC
Confidence 28999999988754
No 496
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=77.65 E-value=13 Score=28.14 Aligned_cols=45 Identities=33% Similarity=0.420 Sum_probs=31.5
Q ss_pred CCCCCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 031325 45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~ 89 (161)
...++.+||=.|+|. |..++.+|+. |..+|+++|.++...+.+++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 445678888888752 3344555654 55579999999998887754
No 497
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=77.31 E-value=1.4 Score=32.10 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCcchHHHHHHHcCCCeEEEEeCChHHHHHHH
Q 031325 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELAS 88 (161)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~la~~~~~~v~~~D~~~~~~~~a~ 88 (161)
.++..+.+.++... +.+|+.||.|...+.+... .+++.-|+++.++..=+
T Consensus 14 ~l~~~i~~~lP~~~--~y~EPF~GggaV~i~~~~~--~~~i~~Din~~Lvn~y~ 63 (274)
T COG0338 14 KLLDQIIPHLPEGV--SYIEPFVGGGAVFINLAAK--KKYILNDINPDLVNLYN 63 (274)
T ss_pred HHHHHHHHhCCCCc--eeeCCccCcceeeeehhhh--hhhhHhcCCHHHHHHHH
Confidence 45555555544323 9999999999998888764 48888899999975543
No 498
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.28 E-value=12 Score=28.25 Aligned_cols=45 Identities=38% Similarity=0.530 Sum_probs=30.7
Q ss_pred CCCCCCeEEEecCCc-chHHHHHHHc-CCCeEEEEeCChHHHHHHHH
Q 031325 45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 45 ~~~~~~~vlD~g~G~-G~~~~~la~~-~~~~v~~~D~~~~~~~~a~~ 89 (161)
...++.+|+=.|+|. |..+..+++. |..+|+++|.++...+.+++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 345677888888652 3344445554 55479999999998888754
No 499
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=76.89 E-value=13 Score=28.95 Aligned_cols=42 Identities=29% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCCCeEEEecCCc-chHHHHHHH-cCCCeEEEEeCChHHHHHHHH
Q 031325 47 VSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASE 89 (161)
Q Consensus 47 ~~~~~vlD~g~G~-G~~~~~la~-~~~~~v~~~D~~~~~~~~a~~ 89 (161)
.++++|+-+|+|. |......++ .|. +|+++|.++.....|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 5789999999996 333333444 355 89999999988777654
No 500
>PLN02253 xanthoxin dehydrogenase
Probab=76.87 E-value=23 Score=25.44 Aligned_cols=72 Identities=25% Similarity=0.366 Sum_probs=45.0
Q ss_pred CCCeEEEecCCcchHHHHHHH----cCCCeEEEEeCChHHHHHHHHHHhhcCCceEEEEcccccccCC-----------C
Q 031325 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----------G 112 (161)
Q Consensus 48 ~~~~vlD~g~G~G~~~~~la~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----------~ 112 (161)
.++++|-.| |+|.++..+++ .|. +|+.++.++...+.....+.. +.++.++.+|+.+...- .
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 456777666 45555665554 454 899999887665544443322 22577888888765321 1
Q ss_pred cccEEEECCC
Q 031325 113 HVDTVVMNPP 122 (161)
Q Consensus 113 ~~D~i~~~~p 122 (161)
..|+++.+.-
T Consensus 94 ~id~li~~Ag 103 (280)
T PLN02253 94 TLDIMVNNAG 103 (280)
T ss_pred CCCEEEECCC
Confidence 4799988754
Done!