BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031330
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Query: 6 TFKVLRRAPELIAPAKPTPRELKPLSDIDDQEGL---RFHIPVIQFYKYNPFVNGKDPVK 62
+ K+ + ++ PA+ TP S++D L FH P + FY+ N D K
Sbjct: 5 SMKIEVKESTMVRPAQETPGRNLWNSNVD----LVVPNFHTPSVYFYRPTGSSNFFD-AK 59
Query: 63 VIREAIAQTLVSYYPFAGRLREGPNRKLMVDCTGEGVLFIEADADVTLEQFGDALQPPFP 122
V+++A+++ LV +YP AGRL+ + ++ ++C GEGVLF+EA++D ++ FGD P
Sbjct: 60 VLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTL 117
Query: 123 GLEELLFDVPGSAGVLNCPLLLIQV 147
L L+ V S G+ + LL++QV
Sbjct: 118 ELRRLIPAVDYSQGISSYALLVLQV 142
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Query: 6 TFKVLRRAPELIAPAKPTPRELKPLSDIDDQEGL---RFHIPVIQFYKYNPFVNGKDPVK 62
+ K+ + ++ PA+ TP S++D L FH P + FY+ N D K
Sbjct: 5 SMKIEVKESTMVRPAQETPGRNLWNSNVD----LVVPNFHTPSVYFYRPTGSSNFFD-AK 59
Query: 63 VIREAIAQTLVSYYPFAGRLREGPNRKLMVDCTGEGVLFIEADADVTLEQFGDALQPPFP 122
V+++A+++ LV +YP AGRL+ + ++ ++C GEGVLF+EA++D ++ FGD P
Sbjct: 60 VLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTL 117
Query: 123 GLEELLFDVPGSAGVLNCPLLLIQV 147
L L+ V S G+ + LL++QV
Sbjct: 118 ELRRLIPAVDYSQGISSYALLVLQV 142
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 6 TFKVLRRAPELIAPAKPTPRELKPLSDIDDQEGLRFHIPVIQFYKYNPFVNGKDPVKVIR 65
K+ + ++ PA+ TP S++D FH P + FY+ N D KV++
Sbjct: 2 AMKIEVKESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYRPTGSSNFFD-AKVLK 59
Query: 66 EAIAQTLVSYYPFAGRLREGPNRKLMVDCTGEGVLFIEADADVTLEQFGDALQPPFPGLE 125
+A+++ LV +YP AGRL+ + ++ ++C GEGVLF+EA++D ++ FGD P L
Sbjct: 60 DALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTLELR 117
Query: 126 ELLFDVPGSAGVLNCPLLLIQV 147
L+ V S G+ + LL++QV
Sbjct: 118 RLIPAVDYSQGISSYALLVLQV 139
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 11 RRAPELIAPAKPTPRELK--PLSDIDDQEGLRFHIPVIQFYKYNPFVNGKDPVKV---IR 65
+ + ELI P+ PTP+ LK +S + DQ L HIP I FY NP + DP + ++
Sbjct: 7 KVSEELILPSSPTPQSLKCYKISHL-DQLLLTCHIPFILFYP-NPLDSNLDPAQTSQHLK 64
Query: 66 EAIAQTLVSYYPFAGRLREGPNRKLMVDCTGEGVLFIEADADVTLEQ 112
+++++ L +YP AGR+ N VDC GV F+EA L Q
Sbjct: 65 QSLSKVLTHFYPLAGRI----NVNSSVDCNDSGVPFVEARVQAQLSQ 107
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 23 TPRELKPLSDIDDQEGLRFHIPVIQFYKYNPFVNGKDPVKVIREAIAQTLVSYYP 77
+P ELK L+DIDD V F+ YNPF A+A YP
Sbjct: 178 SPDELKNLADIDDD------YIVYNFHFYNPFFFTHQKAHWSESAMAYNRTVKYP 226
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 23 TPRELKPLSDIDDQEGLRFHIPVIQFYKYNPFVNGKDPVKVIREAIAQTLVSYYP 77
+P ELK L+DIDD V F+ YNPF A+A YP
Sbjct: 178 SPDELKNLADIDDD------YIVYNFHFYNPFFFTHQKAHWSESAMAYNRTVKYP 226
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 35 DQEGLRFHIPVIQFYK---YN-----PFVNGKDPVKVIREAIAQTLVSY 75
DQE L+FH VI+ Y+ +N VN P++ + E QT++ Y
Sbjct: 177 DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 225
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 35 DQEGLRFHIPVIQFYK---YN-----PFVNGKDPVKVIREAIAQTLVSY 75
DQE L+FH VI+ Y+ +N VN P++ + E QT++ Y
Sbjct: 153 DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 201
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 35 DQEGLRFHIPVIQFYK---YN-----PFVNGKDPVKVIREAIAQTLVSY 75
DQE L+FH VI+ Y+ +N VN P++ + E QT++ Y
Sbjct: 173 DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.145 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,094,712
Number of Sequences: 62578
Number of extensions: 219955
Number of successful extensions: 468
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 9
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)