BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031331
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTF-IDEELSRGDEISQAVLNAMKGSKISV 71
+Y+VFLSFRG DTR+ FT L+ + R I TF D+EL +G EI +L A+ SKI V
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 72 IIFSKRYASSKWCLDELVEILECKNMNGQTVV-PVFYQVDPSDVRNQTGCFADAFVEHEE 130
I S YA SKWCL EL EI+ + + + ++ P+FY VDPSDVR+QTGC+ AF +H
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 QFKNMPEKVQIWRAVLTEASNLSGWY 156
+F + +Q W+ L + +L GW+
Sbjct: 155 KFDG--QTIQNWKDALKKVGDLKGWH 178
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 92/143 (64%), Gaps = 3/143 (2%)
Query: 13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDE-ELSRGDEISQAVLNAMKGSKISV 71
KYDVFLSFRG DTR NF S L+ R++I+TF D+ EL G S + + ++ S+ +V
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 72 IIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQ 131
++ S+ YA+S WCLDELV I++ + TV+P+FY V+P+ VR QTG A+ F +H
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126
Query: 132 FKNMPEKVQIWRAVLTEASNLSG 154
+ PEKV WR LT + LSG
Sbjct: 127 -REDPEKVLKWRQALTNFAQLSG 148
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 50/110 (45%)
Query: 14 YDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVII 73
+D+F+S ED D + H + D L GD + +++ + S+ +++
Sbjct: 21 HDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVV 80
Query: 74 FSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFAD 123
S + +W EL + + ++ ++P++++V +V + + AD
Sbjct: 81 LSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|3MYR|B Chain B, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|D Chain D, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|F Chain F, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|H Chain H, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 561
Score = 30.0 bits (66), Expect = 0.56, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 98 NGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAV 145
N Q VVP + P D R Q G + +A ++ Q ++ + ++I R +
Sbjct: 503 NYQAVVPSTWNAGPRDGRGQAGAY-EAALQDNHQLVDVKQPIEILRTI 549
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 92 LECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASN 151
LE GQ VP Y P DV + G A +E E+Q ++ E+++ + ++T+
Sbjct: 78 LEGAVQAGQLKVPPGYH--PLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQM 135
Query: 152 LSG 154
+G
Sbjct: 136 EAG 138
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 92 LECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASN 151
LE GQ VP Y P DV + G A +E E+Q ++ E+++ + ++T+
Sbjct: 78 LEGAVQAGQLKVPPGYH--PLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVTKLQM 135
Query: 152 LSG 154
+G
Sbjct: 136 EAG 138
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 26 RDNFTSHLHAA----FCRKNIKT-FIDEELSRGDEISQAVLNAMKGSK-----ISVIIFS 75
RD F +H H+ + N+ T F+ EL D+I Q VL +KG + I +I +
Sbjct: 186 RDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVN 245
Query: 76 KRYASS-----KWCLD 86
+ SS W LD
Sbjct: 246 YGFVSSLGPIKNWGLD 261
>pdb|2CHN|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity - Nag-Thiazoline Complex
pdb|2CHN|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity - Nag-Thiazoline Complex
Length = 716
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 101 TVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
TVV F Q + + T + + EQ KN+P +V+ R +++ A+ + W + N+
Sbjct: 571 TVVKFFNQKFNAHLDATTDYXPHKXISNVEQIKNLPLQVKANRVLISPANEVVKWAAGNS 630
>pdb|2VVN|A Chain A, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVN|B Chain B, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVS|A Chain A, Btgh84 Structure In Complex With Pugnac
pdb|2X0H|A Chain A, Btgh84 Michaelis Complex
pdb|2X0H|B Chain B, Btgh84 Michaelis Complex
pdb|4AIS|A Chain A, A Complex Structure Of Btgh84
pdb|4AIS|B Chain B, A Complex Structure Of Btgh84
Length = 737
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 101 TVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
TVV F Q + + T + + EQ KN+P +V+ R +++ A+ + W + N+
Sbjct: 592 TVVKFFNQKFNAHLDATTDYMPHKMISNVEQIKNLPLQVKANRVLISPANEVVKWAAGNS 651
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 101 TVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
TVV F Q + + T + + EQ KN+P +V+ R +++ A+ + W + N+
Sbjct: 592 TVVKFFNQKFNAHLDATTDYMPHKMISNVEQIKNLPLQVKANRVLISPANEVVKWAAGNS 651
>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline
pdb|4AIU|A Chain A, A Complex Structure Of Btgh84
Length = 737
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 101 TVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
TVV F Q + + T + + EQ KN+P +V+ R +++ A+ + W + N+
Sbjct: 592 TVVKFFNQKFNAHLDATTDYMPHKMISNVEQIKNLPLQVKANRVLISPANEVVKWAAGNS 651
>pdb|2JIW|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
pdb|2JIW|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
Length = 716
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 101 TVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
TVV F Q + + T + + EQ KN+P +V+ R +++ A+ + W + N+
Sbjct: 571 TVVKFFNQKFNAHLDATTDYMPHKMISNVEQIKNLPLQVKANRVLISPANEVVKWAAGNS 630
>pdb|2J4G|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
pdb|2J4G|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
Length = 715
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 101 TVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
TVV F Q + + T + + EQ KN+P +V+ R +++ A+ + W + N+
Sbjct: 570 TVVKFFNQKFNAHLDATTDYMPHKMISNVEQIKNLPLQVKANRVLISPANEVVKWAAGNS 629
>pdb|2CHO|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
pdb|2CHO|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
Length = 716
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 101 TVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
TVV F Q + + T + + EQ KN+P +V+ R +++ A+ + W + N+
Sbjct: 571 TVVKFFNQKFNAHLDATTDYMPHKMISNVEQIKNLPLQVKANRVLISPANEVVKWAAGNS 630
>pdb|2J47|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With A Imidazole-Pugnac Hybrid Inhibitor
pdb|2W4X|A Chain A, Btgh84 In Complex With Stz
pdb|2W66|A Chain A, Btgh84 In Complex With Hq602
pdb|2W66|B Chain B, Btgh84 In Complex With Hq602
pdb|2W67|A Chain A, Btgh84 In Complex With Fma34
pdb|2W67|B Chain B, Btgh84 In Complex With Fma34
pdb|2WCA|A Chain A, Btgh84 In Complex With N-Butyl Pugnac
pdb|2XJ7|A Chain A, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XJ7|B Chain B, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XM1|A Chain A, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM1|B Chain B, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM2|A Chain A, Btgh84 In Complex With Lognac
pdb|2XM2|B Chain B, Btgh84 In Complex With Lognac
Length = 716
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 101 TVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160
TVV F Q + + T + + EQ KN+P +V+ R +++ A+ + W + N+
Sbjct: 571 TVVKFFNQKFNAHLDATTDYMPHKMISNVEQIKNLPLQVKANRVLISPANEVVKWAAGNS 630
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 33 LHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELV 89
+H AFCR + S G+EI + + + + ++ + ++ WCL ++
Sbjct: 171 IHCAFCRPT-------QTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVL 220
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 22 GEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGD 54
G D +NF H H+ R+ KTFI EL D
Sbjct: 49 GGDATENFEDHGHSTDARELSKTFIIGELHPDD 81
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 22 GEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGD 54
G D +NF H H+ R+ KTFI EL D
Sbjct: 49 GGDATENFEDHGHSTDARELSKTFIIGELHPDD 81
>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|4H3D|A Chain A, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|B Chain B, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|C Chain C, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|D Chain D, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid
Length = 258
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 25 TRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVII 73
+RD +T+ L+ + ID EL GDE+ V+N ++ VII
Sbjct: 97 SRDYYTT-LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVII 144
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 33 LHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELV 89
+H AFCR + S G+EI + + + + ++ + ++ WCL ++
Sbjct: 189 IHCAFCRPT-------QTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVL 238
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 33 LHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELV 89
+H AFCR + S G+EI + + + + ++ + ++ WCL ++
Sbjct: 189 IHCAFCRPT-------QTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVL 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,374,397
Number of Sequences: 62578
Number of extensions: 161663
Number of successful extensions: 386
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 30
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)