Query 031331
Match_columns 161
No_of_seqs 159 out of 1314
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2E-54 6.8E-59 335.3 11.3 152 7-160 29-182 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 6.4E-54 2.2E-58 326.7 11.3 147 10-158 5-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 2.4E-37 8.1E-42 230.5 2.1 135 9-149 16-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 1.3E-31 4.3E-36 198.4 -0.4 130 8-146 5-145 (146)
5 2js7_A Myeloid differentiation 99.9 1.4E-26 4.9E-31 173.6 4.9 101 9-111 12-117 (160)
6 1fyx_A TOLL-like receptor 2; b 99.9 3.9E-27 1.3E-31 174.6 1.7 104 10-115 2-111 (149)
7 2j67_A TOLL like receptor 10; 99.9 1.6E-26 5.6E-31 176.1 4.6 107 8-116 30-142 (178)
8 1t3g_A X-linked interleukin-1 99.9 1E-25 3.5E-30 168.7 7.4 101 12-112 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-19 5.8E-24 163.1 6.5 101 9-111 666-774 (844)
10 1eiw_A Hypothetical protein MT 98.3 8.3E-07 2.8E-11 62.2 5.9 73 12-107 3-75 (111)
11 3hyn_A Putative signal transdu 97.0 0.0022 7.5E-08 48.4 7.3 96 21-121 27-132 (189)
12 2f62_A Nucleoside 2-deoxyribos 92.2 0.57 1.9E-05 34.2 7.3 75 27-105 26-104 (161)
13 2khz_A C-MYC-responsive protei 88.9 2.4 8.4E-05 30.7 8.2 85 13-105 11-109 (165)
14 4fyk_A Deoxyribonucleoside 5'- 82.3 7.1 0.00024 28.1 7.7 84 15-106 4-101 (152)
15 3ehd_A Uncharacterized conserv 75.0 18 0.00062 26.2 8.1 75 27-106 19-104 (162)
16 2yvq_A Carbamoyl-phosphate syn 68.2 28 0.00094 24.3 7.9 62 16-79 27-107 (143)
17 1s2d_A Purine trans deoxyribos 64.5 35 0.0012 24.6 7.7 84 15-105 9-115 (167)
18 2jug_A TUBC protein; docking d 63.1 5.7 0.00019 25.0 2.8 39 30-68 7-49 (78)
19 1byr_A Protein (endonuclease); 56.7 23 0.0008 24.1 5.4 37 28-65 14-51 (155)
20 3aon_B V-type sodium ATPase su 46.7 31 0.001 23.4 4.5 50 35-90 15-64 (115)
21 1sc3_B Interleukin-1 beta conv 46.4 5.7 0.00019 25.8 0.7 25 17-41 21-45 (88)
22 4a6h_A Phosphatidylinositol 4, 45.7 13 0.00043 25.3 2.4 20 134-153 101-120 (120)
23 1v5p_A Pleckstrin homology dom 44.0 15 0.00051 25.0 2.6 20 134-153 103-122 (126)
24 2ql9_B Caspase-7; cysteine pro 40.4 7 0.00024 25.7 0.4 29 13-41 10-47 (97)
25 1qtn_B Caspase-8; apoptosis, d 40.3 6.5 0.00022 25.8 0.2 28 13-40 12-48 (95)
26 1f8y_A Nucleoside 2-deoxyribos 39.2 84 0.0029 22.3 6.1 84 15-105 5-112 (157)
27 2yry_A Pleckstrin homology dom 38.1 22 0.00074 23.1 2.6 19 134-152 103-121 (122)
28 2dko_B Caspase-3; low barrier 37.1 8.4 0.00029 25.6 0.4 28 13-40 16-52 (103)
29 2cof_A Protein KIAA1914; PH do 36.8 24 0.0008 22.6 2.6 19 134-152 84-102 (107)
30 1pyo_B Caspase-2; apoptosis, c 36.4 8.8 0.0003 25.6 0.4 28 13-40 14-50 (105)
31 2d9v_A Pleckstrin homology dom 36.1 26 0.00087 23.5 2.8 21 134-154 97-117 (130)
32 2coc_A FYVE, rhogef and PH dom 35.5 24 0.00083 23.5 2.5 18 134-151 89-106 (112)
33 1upq_A PEPP1; PH domain, phosp 35.4 24 0.00082 22.9 2.5 23 134-156 92-114 (123)
34 2fcj_A Small toprim domain pro 35.3 31 0.001 23.7 3.0 73 18-94 30-103 (119)
35 2d00_A V-type ATP synthase sub 35.0 84 0.0029 20.9 5.2 44 34-80 15-58 (109)
36 1dro_A Beta-spectrin; cytoskel 33.6 26 0.0009 23.1 2.5 20 134-153 102-121 (122)
37 4h3d_A 3-dehydroquinate dehydr 32.9 62 0.0021 24.8 4.8 71 33-104 104-174 (258)
38 2xzd_B Caspase-3; hydrolase-pr 32.0 13 0.00044 25.5 0.7 23 18-40 29-51 (118)
39 2i5f_A Pleckstrin; PH domain, 31.9 31 0.001 21.8 2.5 17 134-150 92-108 (109)
40 4hde_A SCO1/SENC family lipopr 31.4 59 0.002 22.6 4.2 56 52-112 21-79 (170)
41 3czq_A Putative polyphosphate 31.4 1.5E+02 0.0051 23.5 6.9 99 15-114 86-204 (304)
42 3hjn_A DTMP kinase, thymidylat 30.8 42 0.0014 24.4 3.4 30 17-46 2-33 (197)
43 1x1g_A Pleckstrin 2; PH domain 30.7 33 0.0011 22.5 2.6 19 134-152 107-125 (129)
44 1wu7_A Histidyl-tRNA synthetas 30.5 1E+02 0.0035 25.1 6.1 59 13-76 332-391 (434)
45 2efe_B Small GTP-binding prote 30.3 1.2E+02 0.0042 20.2 7.4 61 52-115 69-130 (181)
46 1z0j_A RAB-22, RAS-related pro 30.2 1.2E+02 0.004 20.0 6.8 62 52-116 63-125 (170)
47 3cxb_B Pleckstrin homology dom 30.2 33 0.0011 22.4 2.5 18 134-151 84-101 (112)
48 1wjm_A Beta-spectrin III; PH d 29.7 29 0.001 22.7 2.2 18 134-151 100-117 (123)
49 1bax_A M-PMV MA, M-PMV matrix 29.3 29 0.001 22.9 2.0 18 27-44 9-26 (94)
50 1tu9_A Hypothetical protein PA 29.2 23 0.00078 24.0 1.6 45 107-153 84-128 (134)
51 2lul_A Tyrosine-protein kinase 28.5 35 0.0012 24.1 2.5 20 134-153 104-123 (164)
52 2w2x_D 1-phosphatidylinositol- 27.9 35 0.0012 22.7 2.3 19 134-152 102-120 (124)
53 3lc0_A Histidyl-tRNA synthetas 27.8 1.1E+02 0.0038 25.4 5.9 61 12-76 360-420 (456)
54 1wgq_A FYVE, rhogef and PH dom 27.8 38 0.0013 21.5 2.4 18 134-151 86-103 (109)
55 1egw_A MADS box transcription 27.8 28 0.00095 22.0 1.6 34 62-95 35-68 (77)
56 1x1f_A Signal-transducing adap 27.7 35 0.0012 24.0 2.4 20 134-153 96-115 (149)
57 1v88_A Oxysterol binding prote 27.5 40 0.0014 22.9 2.6 20 134-153 107-126 (130)
58 2d9y_A Pleckstrin homology dom 27.2 41 0.0014 21.4 2.5 19 134-152 92-110 (117)
59 3rjm_B Caspase-2; caspase-2, c 27.1 15 0.00051 25.1 0.3 29 12-40 14-51 (117)
60 1evl_A Threonyl-tRNA synthetas 27.0 97 0.0033 25.0 5.3 59 13-76 298-357 (401)
61 2i2x_B MTAC, methyltransferase 27.0 90 0.0031 23.7 4.8 85 16-110 126-212 (258)
62 1x05_A Pleckstrin; PH domain, 26.9 40 0.0014 22.1 2.5 19 134-152 103-121 (129)
63 3net_A Histidyl-tRNA synthetas 26.8 86 0.0029 26.1 5.0 62 12-77 370-431 (465)
64 2fg5_A RAB-22B, RAS-related pr 26.8 1.6E+02 0.0053 20.3 7.3 62 52-116 80-142 (192)
65 2dkp_A Pleckstrin homology dom 26.8 40 0.0014 22.0 2.4 19 134-152 102-120 (128)
66 3aj4_A Pleckstrin homology dom 26.3 43 0.0015 21.3 2.5 17 134-150 94-110 (112)
67 2i4r_A V-type ATP synthase sub 26.2 61 0.0021 21.4 3.2 44 35-80 22-65 (102)
68 2h1v_A Ferrochelatase; rossman 26.2 1.6E+02 0.0054 23.1 6.3 64 29-94 63-135 (310)
69 1v89_A Hypothetical protein KI 25.6 42 0.0014 21.3 2.3 19 134-152 95-113 (118)
70 3n75_A LDC, lysine decarboxyla 24.9 1.7E+02 0.0058 26.0 6.8 69 28-111 17-85 (715)
71 2p5s_A RAS and EF-hand domain 24.8 1.7E+02 0.0058 20.2 5.7 61 52-115 85-146 (199)
72 3ro3_B Minsc, peptide of prote 24.8 47 0.0016 15.7 1.7 13 136-148 7-19 (22)
73 2d9x_A Oxysterol binding prote 24.6 41 0.0014 21.9 2.2 20 134-153 87-106 (120)
74 1u5d_A SKAP55, SRC kinase-asso 24.5 43 0.0015 20.8 2.2 18 134-151 88-105 (108)
75 2dn6_A KIAA0640 protein; PH do 24.5 42 0.0014 21.3 2.2 20 134-153 86-105 (115)
76 2dhk_A TBC1 domain family memb 24.2 47 0.0016 21.6 2.4 17 134-150 87-103 (119)
77 1v5u_A SBF1, SET binding facto 23.9 43 0.0015 21.3 2.2 19 134-152 94-112 (117)
78 1fgy_A GRP1; PH domain, signal 23.7 44 0.0015 21.6 2.2 18 134-151 103-120 (127)
79 4g84_A Histidine--tRNA ligase, 23.5 1.5E+02 0.005 24.2 5.8 60 12-75 365-425 (464)
80 3ojo_A CAP5O; rossmann fold, c 23.3 78 0.0027 26.3 4.0 61 22-83 329-392 (431)
81 1btn_A Beta-spectrin; signal t 22.8 48 0.0016 20.7 2.2 15 134-148 91-105 (106)
82 3sm9_A Mglur3, metabotropic gl 22.6 1.6E+02 0.0054 24.2 5.8 55 20-74 192-249 (479)
83 4g85_A Histidine-tRNA ligase, 21.9 1.4E+02 0.0049 24.9 5.5 60 12-75 418-478 (517)
84 1v95_A Nuclear receptor coacti 21.9 2E+02 0.0069 19.8 6.1 47 26-73 20-67 (130)
85 1unq_A RAC-alpha serine/threon 21.8 50 0.0017 21.5 2.2 18 134-151 93-110 (125)
86 2cod_A Centaurin-delta 1; ARF 21.7 57 0.002 20.8 2.4 17 134-150 82-98 (115)
87 1qe0_A Histidyl-tRNA synthetas 21.7 1.1E+02 0.0037 24.6 4.6 60 12-76 328-388 (420)
88 2nrl_A Myoglobin; transport pr 21.5 40 0.0014 23.2 1.7 44 107-153 93-136 (147)
89 2j59_M RHO-GTPase activating p 21.4 58 0.002 22.5 2.6 19 134-152 94-112 (168)
90 4e51_A Histidine--tRNA ligase; 21.3 1.1E+02 0.0037 25.5 4.6 64 12-76 353-417 (467)
91 1pls_A Pleckstrin homology dom 21.3 60 0.002 20.6 2.4 19 134-152 84-102 (113)
92 3rcp_A Pleckstrin homology dom 21.2 51 0.0017 20.6 2.0 19 134-152 76-94 (103)
93 3p57_A Myocyte-specific enhanc 21.1 48 0.0017 21.6 1.9 34 62-95 35-68 (90)
94 1r2q_A RAS-related protein RAB 20.9 1.8E+02 0.0062 18.9 7.8 61 52-115 63-124 (170)
95 2lpy_A Matrix protein P10; GAG 20.8 47 0.0016 23.0 1.8 19 27-45 8-26 (124)
96 1eaz_A Tandem PH domain contai 20.8 61 0.0021 20.9 2.4 19 134-152 94-112 (125)
97 3g46_A Globin-1; oxygen transp 20.6 56 0.0019 22.4 2.3 41 107-151 104-144 (146)
98 2vhb_A Hemoglobin; heme, respi 20.6 53 0.0018 22.3 2.2 45 107-152 88-132 (146)
99 2da0_A 130-kDa phosphatidylino 20.6 61 0.0021 20.8 2.4 18 134-151 84-101 (114)
100 2p0d_A RHO GTPase-activating p 20.5 57 0.0019 21.8 2.2 18 134-151 107-124 (129)
101 4a7p_A UDP-glucose dehydrogena 20.3 80 0.0027 26.3 3.5 62 22-83 336-406 (446)
102 3pid_A UDP-glucose 6-dehydroge 20.1 58 0.002 27.1 2.6 50 22-71 346-400 (432)
103 1sct_A Hemoglobin II (carbonmo 20.1 80 0.0027 21.6 3.0 45 107-152 105-149 (150)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2e-54 Score=335.25 Aligned_cols=152 Identities=43% Similarity=0.786 Sum_probs=141.1
Q ss_pred CCCCCCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhH
Q 031331 7 SHSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCL 85 (161)
Q Consensus 7 s~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 85 (161)
++++.++|||||||+++|+|+.|++||+++|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||+.|+||+
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl 108 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL 108 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence 4457899999999999999999999999999999999999976 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-CCceeeeEEeecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccceeecCC
Q 031331 86 DELVEILECKNM-NGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSMNT 160 (161)
Q Consensus 86 ~El~~~~~~~~~-~~~~viPIfy~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~~~ 160 (161)
+||++|++|.++ ++++||||||+|+|++||+|+|.||++|++|++++. ++++++||.||++||+++||++.++
T Consensus 109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCC
Confidence 999999999875 688999999999999999999999999999998874 7899999999999999999999775
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=6.4e-54 Score=326.67 Aligned_cols=147 Identities=45% Similarity=0.780 Sum_probs=127.6
Q ss_pred CCCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHH
Q 031331 10 AQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDEL 88 (161)
Q Consensus 10 ~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El 88 (161)
.+++|||||||+++|+|+.|++||+++|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 3688999999999999999999999999999999999977 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceeeeEEeecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhcccceeec
Q 031331 89 VEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLSGWYSM 158 (161)
Q Consensus 89 ~~~~~~~~~~~~~viPIfy~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~ 158 (161)
++|++|.+.++++||||||+|+|++|++|+|.||++|.+|+++ .+.+++++||.||++|++++||++.
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 9999999889999999999999999999999999999999988 4689999999999999999999984
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=2.4e-37 Score=230.54 Aligned_cols=135 Identities=18% Similarity=0.356 Sum_probs=118.7
Q ss_pred CCCCcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHH
Q 031331 9 SAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDE 87 (161)
Q Consensus 9 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E 87 (161)
.+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.|.++|.++|++|+++|+|+|++|++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4578999999999999 678999999999999999999987 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceeeeEEeecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 031331 88 LVEILECKNMNGQTVVPVFYQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEA 149 (161)
Q Consensus 88 l~~~~~~~~~~~~~viPIfy~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v 149 (161)
|..++++...++.+||||||+++|++|++|.|.|++.|..... ...+.++-..|.++
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 9999998777788999999999999999999999988854432 23455555555554
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=1.3e-31 Score=198.43 Aligned_cols=130 Identities=15% Similarity=0.261 Sum_probs=93.4
Q ss_pred CCCCCcccEEEcCccCcCcccHHHHHHHHHhc--CCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhh
Q 031331 8 HSAQSKYDVFLSFRGEDTRDNFTSHLHAAFCR--KNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWC 84 (161)
Q Consensus 8 ~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc 84 (161)
...++.|||||||+++|+ .||.+|..+|++ .|+++|++++ +.||+.+.++|.++|++|+++|+|+|+||++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 445789999999999995 689999999998 5999999877 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCceeeeEEeecCcccccccccc--------hHHHHHHHHHhcCCChHHHHHHHHHH
Q 031331 85 LDELVEILECKNMNGQTVVPVFYQVDPSDVRNQTGC--------FADAFVEHEEQFKNMPEKVQIWRAVL 146 (161)
Q Consensus 85 ~~El~~~~~~~~~~~~~viPIfy~v~p~~v~~~~~~--------f~~~f~~~~~~~~~~~~~~~~W~~al 146 (161)
+.|+..++++......+||||||+++++++....+. ....|.++ .+.|.+|+.||
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 999999998863344478899999987766543221 12333333 46778888875
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=1.4e-26 Score=173.57 Aligned_cols=101 Identities=15% Similarity=0.278 Sum_probs=90.3
Q ss_pred CCCCcccEEEcCccCcCcccHHHHHHHHHhcC--CeeeeecCc-ccCcccchHHHHHhhh-cCcEEEEEeecccccChhh
Q 031331 9 SAQSKYDVFLSFRGEDTRDNFTSHLHAAFCRK--NIKTFIDEE-LSRGDEISQAVLNAMK-GSKISVIIFSKRYASSKWC 84 (161)
Q Consensus 9 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~wc 84 (161)
+.++.|||||||+++| ..||.+|..+|+++ |+++|++++ +.||+.+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 3467899999999999 48999999999984 699999877 9999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHHH-hhCCceeeeEEeecCc
Q 031331 85 LDELVEILECK-NMNGQTVVPVFYQVDP 111 (161)
Q Consensus 85 ~~El~~~~~~~-~~~~~~viPIfy~v~p 111 (161)
+.|+..|+++. .+++.+||||+|+.-+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999874 4456799999997544
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=3.9e-27 Score=174.61 Aligned_cols=104 Identities=15% Similarity=0.316 Sum_probs=92.3
Q ss_pred CCCcccEEEcCccCcCcccHHHH-HHHHHhcC--CeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChhhH
Q 031331 10 AQSKYDVFLSFRGEDTRDNFTSH-LHAAFCRK--NIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCL 85 (161)
Q Consensus 10 ~~~~ydVFISy~~~D~r~~fv~~-L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 85 (161)
.++.|||||||+++|. .||.+ |..+|++. |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3678999999999995 79986 99999986 999999887 999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhhCCceeeeEEee-cCccccc
Q 031331 86 DELVEILEC-KNMNGQTVVPVFYQ-VDPSDVR 115 (161)
Q Consensus 86 ~El~~~~~~-~~~~~~~viPIfy~-v~p~~v~ 115 (161)
.|+..++++ ..+++.+||||||+ +++..+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999998853 45667899999995 5555554
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=1.6e-26 Score=176.07 Aligned_cols=107 Identities=15% Similarity=0.326 Sum_probs=89.2
Q ss_pred CCCCCcccEEEcCccCcCcccHHHH-HHHHHhc--CCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccChh
Q 031331 8 HSAQSKYDVFLSFRGEDTRDNFTSH-LHAAFCR--KNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASSKW 83 (161)
Q Consensus 8 ~~~~~~ydVFISy~~~D~r~~fv~~-L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w 83 (161)
...++.|||||||+++|. .||.. |..+|++ +|+++|++++ +.||+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999994 89975 9999998 8999999877 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HhhCCceeeeEEee-cCcccccc
Q 031331 84 CLDELVEILEC-KNMNGQTVVPVFYQ-VDPSDVRN 116 (161)
Q Consensus 84 c~~El~~~~~~-~~~~~~~viPIfy~-v~p~~v~~ 116 (161)
|+.|+..++++ .++++.+||||||+ +.+.++..
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~ 142 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPT 142 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence 99999999864 45567899999996 44444443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=1e-25 Score=168.75 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=89.2
Q ss_pred CcccEEEcCccCcC---------cccHHHHHHH-HHh-cCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccc
Q 031331 12 SKYDVFLSFRGEDT---------RDNFTSHLHA-AFC-RKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYA 79 (161)
Q Consensus 12 ~~ydVFISy~~~D~---------r~~fv~~L~~-~L~-~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~ 79 (161)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|++++ +.||+.+.++|.++|++|+.+|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3679988665 699 79999999877 999999999999999999999999999997
Q ss_pred -cChhhHHHHHHHHHHH-hhCCceeeeEEeecCcc
Q 031331 80 -SSKWCLDELVEILECK-NMNGQTVVPVFYQVDPS 112 (161)
Q Consensus 80 -~S~wc~~El~~~~~~~-~~~~~~viPIfy~v~p~ 112 (161)
.|.||+.|+..++++. .+++.+||||+|...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999875 56788999999875443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=163.12 Aligned_cols=101 Identities=17% Similarity=0.296 Sum_probs=90.0
Q ss_pred CCCCcccEEEcCccCcCcccHH-HHHHHHHhc-----CCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeecccccC
Q 031331 9 SAQSKYDVFLSFRGEDTRDNFT-SHLHAAFCR-----KNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSKRYASS 81 (161)
Q Consensus 9 ~~~~~ydVFISy~~~D~r~~fv-~~L~~~L~~-----~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S 81 (161)
...++|||||||+++|. .|| ..|...|+. .|+++|++++ +.||+.+.++|.++|++||++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35679999999999994 787 779999985 5899999887 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHH-hhCCceeeeEEeecCc
Q 031331 82 KWCLDELVEILECK-NMNGQTVVPVFYQVDP 111 (161)
Q Consensus 82 ~wc~~El~~~~~~~-~~~~~~viPIfy~v~p 111 (161)
+||..|+..++.+. ++++.+||||||+..|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 99999999998764 5677899999996443
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.34 E-value=8.3e-07 Score=62.21 Aligned_cols=73 Identities=3% Similarity=0.021 Sum_probs=53.8
Q ss_pred CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHH
Q 031331 12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEI 91 (161)
Q Consensus 12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~ 91 (161)
..|.+||||+.+| . ...|...|.+.|+. |.| +.|+.|.++|++.++...+|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4799999999998 2 33444444333432 222 679999999999999999999999998766
Q ss_pred HHHHhhCCceeeeEEe
Q 031331 92 LECKNMNGQTVVPVFY 107 (161)
Q Consensus 92 ~~~~~~~~~~viPIfy 107 (161)
. +.+.+||-|.-
T Consensus 64 ~----~~gkpIigV~~ 75 (111)
T 1eiw_A 64 R----KSSKPIITVRP 75 (111)
T ss_dssp T----TTTCCEEEECC
T ss_pred H----HcCCCEEEEEc
Confidence 4 45667777763
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.01 E-value=0.0022 Score=48.39 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=64.7
Q ss_pred ccCcCcccHHHHHHHHHhcCCeeeeecCc-c----c---C-cccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHH
Q 031331 21 RGEDTRDNFTSHLHAAFCRKNIKTFIDEE-L----S---R-GDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEI 91 (161)
Q Consensus 21 ~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~----~---~-G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~ 91 (161)
..+|. .....|..--.+..+-.|.|.. . . . -..|...+.+.|..|+.+|+++|++..+|.|...|+..+
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 44553 3455565555555554556642 2 1 2 346788999999999999999999999999999999887
Q ss_pred HHHHhhCCceeeeEEeecC-cccccccccch
Q 031331 92 LECKNMNGQTVVPVFYQVD-PSDVRNQTGCF 121 (161)
Q Consensus 92 ~~~~~~~~~~viPIfy~v~-p~~v~~~~~~f 121 (161)
+. +.+.+||-|..+-. .+++.+-.|.|
T Consensus 105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~ 132 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNF 132 (189)
T ss_dssp TT---TTCCCEEEEETTCCSGGGTBCTTSCB
T ss_pred HH---hcCCcEEEEECCccccchhhhccccc
Confidence 62 35668888875522 33454433443
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=92.24 E-value=0.57 Score=34.24 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHhcCCeeeeecCc--ccCcccchHHHHHhhhcCcEEEEEeec--ccccChhhHHHHHHHHHHHhhCCcee
Q 031331 27 DNFTSHLHAAFCRKNIKTFIDEE--LSRGDEISQAVLNAMKGSKISVIIFSK--RYASSKWCLDELVEILECKNMNGQTV 102 (161)
Q Consensus 27 ~~fv~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~El~~~~~~~~~~~~~v 102 (161)
..+...+...|+++|+.+|...+ ......|.+.-.++|++|+++|++++| .-..+.-...|+..+.. .+.+|
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A----lgKPV 101 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA----LNKMV 101 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH----TTCEE
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH----CCCEE
Confidence 37889999999999999988543 223445555668999999999999996 32344557889888764 34465
Q ss_pred eeE
Q 031331 103 VPV 105 (161)
Q Consensus 103 iPI 105 (161)
+-+
T Consensus 102 i~l 104 (161)
T 2f62_A 102 LTF 104 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=88.93 E-value=2.4 Score=30.66 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=55.0
Q ss_pred cccEEEcCccC--cCcccHHHHHHHHHhcCCeeeeecCccc-----Ccc-------cchHHHHHhhhcCcEEEEEeeccc
Q 031331 13 KYDVFLSFRGE--DTRDNFTSHLHAAFCRKNIKTFIDEELS-----RGD-------EISQAVLNAMKGSKISVIIFSKRY 78 (161)
Q Consensus 13 ~ydVFISy~~~--D~r~~fv~~L~~~L~~~gi~~f~d~~~~-----~G~-------~i~~~i~~aI~~S~~~Ivv~S~~y 78 (161)
...|||+=.-. .........+...|++.| .|+.++... .|. .+...-.+.|++|+++|++++
T Consensus 11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~--- 86 (165)
T 2khz_A 11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT--- 86 (165)
T ss_dssp CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS---
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC---
Confidence 45699984222 111225588999999999 886544321 221 223444589999999999997
Q ss_pred ccChhhHHHHHHHHHHHhhCCceeeeE
Q 031331 79 ASSKWCLDELVEILECKNMNGQTVVPV 105 (161)
Q Consensus 79 ~~S~wc~~El~~~~~~~~~~~~~viPI 105 (161)
..+.-+..|+..+.. .+..|+-+
T Consensus 87 ~~d~Gt~~EiGyA~a----lgKPVi~l 109 (165)
T 2khz_A 87 QPSLGVGYELGRAVA----LGKPILCL 109 (165)
T ss_dssp SCCHHHHHHHHHHHH----TCSSEEEE
T ss_pred CCCCCHHHHHHHHHH----CCCEEEEE
Confidence 456778899988764 34455544
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=82.34 E-value=7.1 Score=28.12 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=54.6
Q ss_pred cEEEc--CccCcCcccHHHHHHHHHhcCCeeeeecCc----c-cCcc-------cchHHHHHhhhcCcEEEEEeeccccc
Q 031331 15 DVFLS--FRGEDTRDNFTSHLHAAFCRKNIKTFIDEE----L-SRGD-------EISQAVLNAMKGSKISVIIFSKRYAS 80 (161)
Q Consensus 15 dVFIS--y~~~D~r~~fv~~L~~~L~~~gi~~f~d~~----~-~~G~-------~i~~~i~~aI~~S~~~Ivv~S~~y~~ 80 (161)
.|||+ +++.+....+...+.+.|++.| .|+...- + ..|+ .+.+.-.+.|++|+++|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46665 3332223467799999999999 6764221 1 1222 256677789999999999988 55
Q ss_pred ChhhHHHHHHHHHHHhhCCceeeeEE
Q 031331 81 SKWCLDELVEILECKNMNGQTVVPVF 106 (161)
Q Consensus 81 S~wc~~El~~~~~~~~~~~~~viPIf 106 (161)
|.-...|+..+... +.+|+-++
T Consensus 80 d~Gt~~EiG~A~al----gkPV~~l~ 101 (152)
T 4fyk_A 80 SLGVGYELGRAVAL----GKPILCLF 101 (152)
T ss_dssp CHHHHHHHHHHHHT----TCCEEEEE
T ss_pred CCCHHHHHHHHHHc----CCeEEEEE
Confidence 77788899887653 44555443
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=74.98 E-value=18 Score=26.16 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHhcC--CeeeeecCc--c---cCc----ccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHH
Q 031331 27 DNFTSHLHAAFCRK--NIKTFIDEE--L---SRG----DEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECK 95 (161)
Q Consensus 27 ~~fv~~L~~~L~~~--gi~~f~d~~--~---~~G----~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~ 95 (161)
..+...+.++|+.+ |+.+|...+ . .++ ..+...-.++|++|+++|.++.. ...+..+..|+..+..
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a-- 95 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDG-PTIDAGVASEIGVAYA-- 95 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCS-SSCCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCC-CCCCCCHHHHHHHHHH--
Confidence 35778899999865 899987443 1 122 23555566789999999999953 3456788899988765
Q ss_pred hhCCceeeeEE
Q 031331 96 NMNGQTVVPVF 106 (161)
Q Consensus 96 ~~~~~~viPIf 106 (161)
.+.+|+.+.
T Consensus 96 --~gkPVi~~~ 104 (162)
T 3ehd_A 96 --KGIPVVALY 104 (162)
T ss_dssp --TTCCEEEEC
T ss_pred --CCCEEEEEE
Confidence 344565553
No 16
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=68.20 E-value=28 Score=24.30 Aligned_cols=62 Identities=8% Similarity=0.121 Sum_probs=40.8
Q ss_pred EEEcCccCcCcccHHHHHHHHHhcCCeeeeecC-------------c-ccC---c-c-cchHHHHHhhhcCcEEEEEeec
Q 031331 16 VFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDE-------------E-LSR---G-D-EISQAVLNAMKGSKISVIIFSK 76 (161)
Q Consensus 16 VFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~-------------~-~~~---G-~-~i~~~i~~aI~~S~~~Ivv~S~ 76 (161)
||||.+..| +.-+-.+...|...|++++--. . +.. | + .-.++|.+.|++-++-+||..|
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998776 2345557778888888876211 1 111 1 1 0015788889999999999988
Q ss_pred ccc
Q 031331 77 RYA 79 (161)
Q Consensus 77 ~y~ 79 (161)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=64.48 E-value=35 Score=24.61 Aligned_cols=84 Identities=11% Similarity=0.177 Sum_probs=56.8
Q ss_pred cEEEc---CccCcCcccHHHHHHHHHhcC--CeeeeecCc--c--------cCc--------ccchHHHHHhhhcCcEEE
Q 031331 15 DVFLS---FRGEDTRDNFTSHLHAAFCRK--NIKTFIDEE--L--------SRG--------DEISQAVLNAMKGSKISV 71 (161)
Q Consensus 15 dVFIS---y~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~--~--------~~G--------~~i~~~i~~aI~~S~~~I 71 (161)
.|||. |+..+ ..+...+.+.|+++ |+.+|...+ . ..+ ..|.+.-.++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 47776 33332 45789999999999 889886433 2 111 234456668899999999
Q ss_pred EEeecccccChhhHHHHHHHHHHHhhCCceeeeE
Q 031331 72 IIFSKRYASSKWCLDELVEILECKNMNGQTVVPV 105 (161)
Q Consensus 72 vv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPI 105 (161)
.++...-. +.-...|+..+.. .+.+|+-+
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~a----lgKPVv~l 115 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRA----MHKPVILV 115 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHH----TTCCEEEE
T ss_pred EECCCCCC-CCCceeehhhHhh----CCCeEEEE
Confidence 99987554 4567789887754 34466554
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=63.14 E-value=5.7 Score=24.97 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCeeeeecCc-cc---CcccchHHHHHhhhcCc
Q 031331 30 TSHLHAAFCRKNIKTFIDEE-LS---RGDEISQAVLNAMKGSK 68 (161)
Q Consensus 30 v~~L~~~L~~~gi~~f~d~~-~~---~G~~i~~~i~~aI~~S~ 68 (161)
+..|...|.++||..|.+.+ +. |-..+.+++...+.+.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 34677899999999999877 42 44567778888776655
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=56.70 E-value=23 Score=24.09 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=18.5
Q ss_pred cHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhh
Q 031331 28 NFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMK 65 (161)
Q Consensus 28 ~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~ 65 (161)
.+...|...+.+..-.+++--- + +.+.+.+.+.++.+
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~ 51 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKK 51 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHH
Confidence 3455666666654434443222 3 34455555555544
No 20
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=46.74 E-value=31 Score=23.42 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=33.4
Q ss_pred HHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHH
Q 031331 35 AAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVE 90 (161)
Q Consensus 35 ~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~ 90 (161)
..++-.|+.+|... .-+.+.+.+.+.+++ ++.|++++++.+.. +.+++..
T Consensus 15 ~GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 15 SPFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 34556688887532 334566677777777 99999999998863 3444443
No 21
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=46.38 E-value=5.7 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=17.3
Q ss_pred EEcCccCcCcccHHHHHHHHHhcCC
Q 031331 17 FLSFRGEDTRDNFTSHLHAAFCRKN 41 (161)
Q Consensus 17 FISy~~~D~r~~fv~~L~~~L~~~g 41 (161)
|.|||+......|+..|.+.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 3455655555778899998887643
No 22
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=45.66 E-value=13 Score=25.30 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031331 134 NMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (161)
.+.+..++|.+||..+++++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 46789999999999998753
No 23
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=43.99 E-value=15 Score=25.00 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031331 134 NMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (161)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 46889999999999998874
No 24
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=40.42 E-value=7 Score=25.66 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=18.0
Q ss_pred cccEEEcCc---------cCcCcccHHHHHHHHHhcCC
Q 031331 13 KYDVFLSFR---------GEDTRDNFTSHLHAAFCRKN 41 (161)
Q Consensus 13 ~ydVFISy~---------~~D~r~~fv~~L~~~L~~~g 41 (161)
+-|.+++|+ +.+....|+..|.+.|++.|
T Consensus 10 ~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 10 EADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 456666654 44444568888888886643
No 25
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=40.29 E-value=6.5 Score=25.82 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=17.8
Q ss_pred cccEEEcCccC---------cCcccHHHHHHHHHhcC
Q 031331 13 KYDVFLSFRGE---------DTRDNFTSHLHAAFCRK 40 (161)
Q Consensus 13 ~ydVFISy~~~---------D~r~~fv~~L~~~L~~~ 40 (161)
+-|.+++|+.. +....|+..|.+.|++.
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 48 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRER 48 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHh
Confidence 56777776533 33456777777777653
No 26
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=39.15 E-value=84 Score=22.25 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=54.7
Q ss_pred cEEEc---CccCcCcccHHHHHHHHHhcCCe----eeeecCc--c--------cC---c----ccchHHHHHhhhcCcEE
Q 031331 15 DVFLS---FRGEDTRDNFTSHLHAAFCRKNI----KTFIDEE--L--------SR---G----DEISQAVLNAMKGSKIS 70 (161)
Q Consensus 15 dVFIS---y~~~D~r~~fv~~L~~~L~~~gi----~~f~d~~--~--------~~---G----~~i~~~i~~aI~~S~~~ 70 (161)
.||++ |+... ..+...+...|+.+|. .+|...+ . .. + ..|.+.-.++|++|+++
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 36665 33332 4678899999999885 6766433 2 11 1 23455566889999999
Q ss_pred EEEeecccccChhhHHHHHHHHHHHhhCCceeeeE
Q 031331 71 VIIFSKRYASSKWCLDELVEILECKNMNGQTVVPV 105 (161)
Q Consensus 71 Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPI 105 (161)
|.++...-. +.-...|+..+.. .+.+|+-+
T Consensus 83 vA~ldg~~~-D~GT~~EiGyA~A----~gkPVv~~ 112 (157)
T 1f8y_A 83 LGVYIPDEE-DVGLGMELGYALS----QGKYVLLV 112 (157)
T ss_dssp EEECCGGGC-CHHHHHHHHHHHH----TTCEEEEE
T ss_pred EEEcCCCCC-CccHHHHHHHHHH----CCCeEEEE
Confidence 999985443 4567789887764 34466554
No 27
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.07 E-value=22 Score=23.13 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999998865
No 28
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=37.10 E-value=8.4 Score=25.63 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=17.9
Q ss_pred cccEEEcCc---------cCcCcccHHHHHHHHHhcC
Q 031331 13 KYDVFLSFR---------GEDTRDNFTSHLHAAFCRK 40 (161)
Q Consensus 13 ~ydVFISy~---------~~D~r~~fv~~L~~~L~~~ 40 (161)
+-|.+++|+ +......|+..|.+.|++.
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~ 52 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 52 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHh
Confidence 457777664 3333456888888888654
No 29
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=36.76 E-value=24 Score=22.63 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..++|..||..+++.
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3678899999999988764
No 30
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=36.38 E-value=8.8 Score=25.63 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=17.8
Q ss_pred cccEEEcC---------ccCcCcccHHHHHHHHHhcC
Q 031331 13 KYDVFLSF---------RGEDTRDNFTSHLHAAFCRK 40 (161)
Q Consensus 13 ~ydVFISy---------~~~D~r~~fv~~L~~~L~~~ 40 (161)
+-|.+++| |+......|+..|.+.|++.
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~ 50 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSER 50 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 45666655 44444567888888888663
No 31
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.06 E-value=26 Score=23.51 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHhhcccc
Q 031331 134 NMPEKVQIWRAVLTEASNLSG 154 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~G 154 (161)
++++..+.|..||..+...+.
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~ 117 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPA 117 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCC
Confidence 467899999999999987654
No 32
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=35.50 E-value=24 Score=23.53 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
++++..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 468999999999998764
No 33
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=35.45 E-value=24 Score=22.92 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHhhccccee
Q 031331 134 NMPEKVQIWRAVLTEASNLSGWY 156 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~G~~ 156 (161)
.+++..+.|..||..+....+-.
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~~ 114 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGDD 114 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHHHhcccCC
Confidence 35789999999999998766443
No 34
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=35.33 E-value=31 Score=23.71 Aligned_cols=73 Identities=11% Similarity=0.177 Sum_probs=43.7
Q ss_pred EcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChh-hHHHHHHHHHH
Q 031331 18 LSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKW-CLDELVEILEC 94 (161)
Q Consensus 18 ISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w-c~~El~~~~~~ 94 (161)
|.-.|. ....-...|..+.+.+|+-+|.|.+ .+|+.|...|.+.+.++. ..-+.+.+..=.- ..+++..+++.
T Consensus 30 I~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D-~~GekIRk~i~~~lp~~~--hafi~r~~~gVE~a~~~~I~~aL~~ 103 (119)
T 2fcj_A 30 VCTNGT-ISDARLEELADELEGYDVYLLADAD-EAGEKLRRQFRRMFPEAE--HLYIDRAYREVAAAPIWHLAQVLLR 103 (119)
T ss_dssp EECCSC-CCHHHHHHHHHHTTTSEEEEECCSS-HHHHHHHHHHHHHCTTSE--EECCCTTTCSTTTSCHHHHHHHHHH
T ss_pred EEeCCc-cCHHHHHHHHHHhcCCCEEEEECCC-ccHHHHHHHHHHHCCCCc--EEeccCCccCcccCCHHHHHHHHHh
Confidence 444444 3333456677777788888888775 478888888888887775 3344554442111 13455555543
No 35
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=34.97 E-value=84 Score=20.86 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=32.0
Q ss_pred HHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeeccccc
Q 031331 34 HAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYAS 80 (161)
Q Consensus 34 ~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 80 (161)
...|.-.|+.+|.. ...+.+.+.+.+.+++-++.|++++++.+.
T Consensus 15 v~GFrLaGi~~~~v---~~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 15 AQGFRLAGLEGYGA---SSAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHTTSEEEEC---SSHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHcCCeEEEe---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 33455578888753 233556667777777789999999999987
No 36
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=33.56 E-value=26 Score=23.07 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031331 134 NMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (161)
.+++.++.|..||..+++..
T Consensus 102 ~s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 102 HDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSSHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 35789999999999987653
No 37
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=32.89 E-value=62 Score=24.84 Aligned_cols=71 Identities=24% Similarity=0.256 Sum_probs=40.7
Q ss_pred HHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHHhhCCceeee
Q 031331 33 LHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVP 104 (161)
Q Consensus 33 L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viP 104 (161)
|...+...|.--|+|-++..++.+..++.+...+..+-| |.|-+..+..|-.+|+...+..+...+.-|+=
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvK 174 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELGADLPK 174 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 333443445444566555555555556665555555444 56666556667778888888777666644433
No 38
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=32.02 E-value=13 Score=25.47 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=14.6
Q ss_pred EcCccCcCcccHHHHHHHHHhcC
Q 031331 18 LSFRGEDTRDNFTSHLHAAFCRK 40 (161)
Q Consensus 18 ISy~~~D~r~~fv~~L~~~L~~~ 40 (161)
.|||+......|+..|.+.|++.
T Consensus 29 vS~R~~~~GSwFIQ~Lc~vl~~~ 51 (118)
T 2xzd_B 29 YSWRNSKDGSWFIQSLCAMLKQY 51 (118)
T ss_dssp CCCEETTTEEHHHHHHHHHHHHH
T ss_pred EeeEeCCCCCccHHHHHHHHHHh
Confidence 33444444467888888888763
No 39
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=31.85 E-value=31 Score=21.78 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHHHHhh
Q 031331 134 NMPEKVQIWRAVLTEAS 150 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~ 150 (161)
.+++..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 36788999999999875
No 40
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=31.42 E-value=59 Score=22.63 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred CcccchHHHHHhhhcCcEEEEEeecccccChhhHH---HHHHHHHHHhhCCceeeeEEeecCcc
Q 031331 52 RGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLD---ELVEILECKNMNGQTVVPVFYQVDPS 112 (161)
Q Consensus 52 ~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~---El~~~~~~~~~~~~~viPIfy~v~p~ 112 (161)
-|+.+.-+ ..+. +++|+-|--..+ ..||.. +|..+.+..+..+..|..|+..++|.
T Consensus 21 ~G~~v~l~---d~~G-k~vll~F~~t~C-p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 21 DGKPFGTK---DLKG-KVWVADFMFTNC-QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TSCEEEHH---HHTT-SCEEEEEECTTC-SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCEEeHH---HhCC-CEEEEEEECCCC-CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 46655422 2344 444444432222 136755 44444454555566788888888774
No 41
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=31.40 E-value=1.5e+02 Score=23.50 Aligned_cols=99 Identities=12% Similarity=0.234 Sum_probs=58.4
Q ss_pred cEEEcCccCcC--cccHHHHHHHHHhcCCeeeeecCc---ccCcccchHHHHHhhhcCcEEEEEeecccccCh-------
Q 031331 15 DVFLSFRGEDT--RDNFTSHLHAAFCRKNIKTFIDEE---LSRGDEISQAVLNAMKGSKISVIIFSKRYASSK------- 82 (161)
Q Consensus 15 dVFISy~~~D~--r~~fv~~L~~~L~~~gi~~f~d~~---~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~------- 82 (161)
-|||-|-|-|. +.+-+.+|...|..+|++|..-.. -..+..+...+..++-... -|+|+-..+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G-~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAG-EFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTT-CEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCC-eEEEEECCcchHHHHHHHhc
Confidence 48999977775 356789999999999998865331 2233445556666663333 3445554443321
Q ss_pred hhHH-HHHHHHHH-------HhhCCceeeeEEeecCcccc
Q 031331 83 WCLD-ELVEILEC-------KNMNGQTVVPVFYQVDPSDV 114 (161)
Q Consensus 83 wc~~-El~~~~~~-------~~~~~~~viPIfy~v~p~~v 114 (161)
.|-. |....++. ....+..++-+|+++++..-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 2222 22222221 22356788888899988764
No 42
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=30.82 E-value=42 Score=24.36 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=23.8
Q ss_pred EEcCccCcC--cccHHHHHHHHHhcCCeeeee
Q 031331 17 FLSFRGEDT--RDNFTSHLHAAFCRKNIKTFI 46 (161)
Q Consensus 17 FISy~~~D~--r~~fv~~L~~~L~~~gi~~f~ 46 (161)
||.+-|-|. +.+-+..|.+.|+.+|+++-.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 788877774 356788999999999988754
No 43
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.71 E-value=33 Score=22.48 Aligned_cols=19 Identities=5% Similarity=0.142 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..+..-
T Consensus 107 ~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4688999999999998764
No 44
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=30.52 E-value=1e+02 Score=25.07 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=36.7
Q ss_pred cccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhh-cCcEEEEEeec
Q 031331 13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMK-GSKISVIIFSK 76 (161)
Q Consensus 13 ~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~ 76 (161)
.+||+|..-+++. ...+..|...|.++|+++-+|.. +..+...+..|-. +... ++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~-~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADF-AVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSE-EEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCE-EEEECc
Confidence 4889866555443 46788999999999999988763 2333334433332 4444 444443
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=30.33 E-value=1.2e+02 Score=20.23 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=32.3
Q ss_pred Ccc-cchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHHhhCCceeeeEEeecCccccc
Q 031331 52 RGD-EISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVR 115 (161)
Q Consensus 52 ~G~-~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPIfy~v~p~~v~ 115 (161)
||. .+.......++.++.+|+|++..- .....++...++........-+|+++-....|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVTN---QASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 553 334445567788999999998543 3344444444443322222234444434445543
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=30.24 E-value=1.2e+02 Score=19.97 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=33.1
Q ss_pred Ccc-cchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHHhhCCceeeeEEeecCcccccc
Q 031331 52 RGD-EISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRN 116 (161)
Q Consensus 52 ~G~-~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPIfy~v~p~~v~~ 116 (161)
||. .+.......++.++.+|+|++.+-.. ...++...++.....+..-+||+.-....|+.+
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 63 AGLERFRALAPMYYRGSAAAIIVYDITKEE---TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred CCchhhhcccHhhCcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 453 33444456778999999999865433 333443333333322333456655444555543
No 47
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=30.20 E-value=33 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
.+++..+.|..||..++.
T Consensus 84 ~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 84 ESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 368899999999998765
No 48
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=29.68 E-value=29 Score=22.71 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=15.2
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
.+++.++.|..||..++.
T Consensus 100 ~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 100 KDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 367899999999998865
No 49
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=29.25 E-value=29 Score=22.94 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHhcCCeee
Q 031331 27 DNFTSHLHAAFCRKNIKT 44 (161)
Q Consensus 27 ~~fv~~L~~~L~~~gi~~ 44 (161)
..|+..|...|+.+||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 479999999999999998
No 50
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=29.22 E-value=23 Score=23.95 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=29.0
Q ss_pred eecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhccc
Q 031331 107 YQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 107 y~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~ 153 (161)
++|+|.+..-....+-.++.++... -+++-..-|.+++..+++.-
T Consensus 84 ~gV~p~~f~~~~~~Ll~~l~~lg~~--~t~e~~~AW~~~~~~~a~~l 128 (134)
T 1tu9_A 84 LDIRPELYDLWLDALLMAVAEHDRD--CDAETRDAWRDVMGRGIAVI 128 (134)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHH
Confidence 4677777765444444444442222 26888899999999988653
No 51
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=28.51 E-value=35 Score=24.07 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=16.6
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031331 134 NMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (161)
.+++..++|..||.++..-.
T Consensus 104 ~s~~e~~~Wi~aL~~~i~~n 123 (164)
T 2lul_A 104 PSPQSRDLWVKKLKEEIKNN 123 (164)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHC
Confidence 46789999999999998643
No 52
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=27.90 E-value=35 Score=22.73 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..++..
T Consensus 102 ~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 102 DKVEELFEWFQSIREITWK 120 (124)
T ss_dssp CCCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3578999999999988753
No 53
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=27.84 E-value=1.1e+02 Score=25.45 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=40.2
Q ss_pred CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeec
Q 031331 12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSK 76 (161)
Q Consensus 12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~ 76 (161)
...||||...+++. ..-+-.+...|+++|+++-++.. +.++..++..|-+.--..++++.+
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEECC
Confidence 34788877656653 34577899999999999977542 334666666666554445555553
No 54
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=27.82 E-value=38 Score=21.52 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
.+++..+.|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 357889999999998764
No 55
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=27.77 E-value=28 Score=22.03 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=23.2
Q ss_pred HhhhcCcEEEEEeecccccChhhHHHHHHHHHHH
Q 031331 62 NAMKGSKISVIIFSKRYASSKWCLDELVEILECK 95 (161)
Q Consensus 62 ~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~ 95 (161)
..+.++.++++|||++-.-..||-..+..++++.
T Consensus 35 svLCdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 35 SVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp HHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred hcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 3467899999999997655555544555665543
No 56
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.70 E-value=35 Score=23.99 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031331 134 NMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (161)
++++..+.|..||..|+.+.
T Consensus 96 ~s~ee~~eWi~aI~~v~~~~ 115 (149)
T 1x1f_A 96 ENTESGEEWRGFILTVTELS 115 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHccc
Confidence 35788999999999998764
No 57
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.51 E-value=40 Score=22.90 Aligned_cols=20 Identities=15% Similarity=0.156 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031331 134 NMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (161)
++++..++|++||..+....
T Consensus 107 ~s~~e~~~Wi~ai~~a~~~~ 126 (130)
T 1v88_A 107 TSESDGRCWMDALELALKSG 126 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 46889999999999987654
No 58
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.17 E-value=41 Score=21.45 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..+...
T Consensus 92 ~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 92 ESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp SSHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 3578999999999998764
No 59
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=27.13 E-value=15 Score=25.11 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=18.3
Q ss_pred CcccEEEcCccC---------cCcccHHHHHHHHHhcC
Q 031331 12 SKYDVFLSFRGE---------DTRDNFTSHLHAAFCRK 40 (161)
Q Consensus 12 ~~ydVFISy~~~---------D~r~~fv~~L~~~L~~~ 40 (161)
.+-|.+++|+.. .....|+..|.+.|++.
T Consensus 14 ~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~ 51 (117)
T 3rjm_B 14 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSER 51 (117)
T ss_dssp SSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHh
Confidence 346666666433 33467888888888664
No 60
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=27.04 E-value=97 Score=24.97 Aligned_cols=59 Identities=8% Similarity=0.164 Sum_probs=37.7
Q ss_pred cccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhh-cCcEEEEEeec
Q 031331 13 KYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMK-GSKISVIIFSK 76 (161)
Q Consensus 13 ~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~ 76 (161)
.++|+|---+++ ....+..|...|++.|+++-+|.. +..+...+..|-. +... ++|+.+
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~-~iiiG~ 357 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPY-MLVCGD 357 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSE-EEEECH
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCE-EEEECc
Confidence 478987655444 356788999999999999988764 2344444444433 3343 444443
No 61
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.95 E-value=90 Score=23.70 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=50.4
Q ss_pred EEEcCccCcCcccHH-HHHHHHHhcCCeeee-ecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHH
Q 031331 16 VFLSFRGEDTRDNFT-SHLHAAFCRKNIKTF-IDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILE 93 (161)
Q Consensus 16 VFISy~~~D~r~~fv-~~L~~~L~~~gi~~f-~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~ 93 (161)
|.+.--..|. +.+- .-+...|+.+|+.|. +..+. -.+++.+++++.+.-+|.+|-.-..+ +..+...++
T Consensus 126 vlla~~~gd~-HdiG~~iva~~L~~~G~~Vi~LG~~v-----p~e~l~~~~~~~~~d~V~lS~l~~~~---~~~~~~~i~ 196 (258)
T 2i2x_B 126 VVCHVAEGDV-HDIGKNIVTALLRANGYNVVDLGRDV-----PAEEVLAAVQKEKPIMLTGTALMTTT---MYAFKEVND 196 (258)
T ss_dssp EEEEECTTCC-CCHHHHHHHHHHHHTTCEEEEEEEEC-----CSHHHHHHHHHHCCSEEEEECCCTTT---TTHHHHHHH
T ss_pred EEEEeCCCCc-cHHHHHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHHHcCCCEEEEEeeccCC---HHHHHHHHH
Confidence 5444334443 3444 345666789999984 32222 22467777787777777787654443 345555555
Q ss_pred HHhhCCceeeeEEeecC
Q 031331 94 CKNMNGQTVVPVFYQVD 110 (161)
Q Consensus 94 ~~~~~~~~viPIfy~v~ 110 (161)
..++.+.. +||+.+..
T Consensus 197 ~l~~~~~~-~~v~vGG~ 212 (258)
T 2i2x_B 197 MLLENGIK-IPFACGGG 212 (258)
T ss_dssp HHHTTTCC-CCEEEEST
T ss_pred HHHhcCCC-CcEEEECc
Confidence 55555555 89998643
No 62
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=26.90 E-value=40 Score=22.06 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..+...
T Consensus 103 ~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 103 ATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp SSHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 4678999999999998764
No 63
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=26.84 E-value=86 Score=26.07 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=39.7
Q ss_pred CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecc
Q 031331 12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKR 77 (161)
Q Consensus 12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~ 77 (161)
...||+|..-+++. ...+-.|...|+++|+++-+|.. +..+...+..|-..---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 35799986655543 45788999999999999988753 2344444444444322345555554
No 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=26.83 E-value=1.6e+02 Score=20.26 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=32.9
Q ss_pred Ccc-cchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHHhhCCceeeeEEeecCcccccc
Q 031331 52 RGD-EISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVRN 116 (161)
Q Consensus 52 ~G~-~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPIfy~v~p~~v~~ 116 (161)
||. .+.......++.++.+|+|++-+-.. ...++...++........-+|++.-....|+.+
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~---s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQD---SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTH---HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 553 34444556788999999999865433 334444433333222212245555445555543
No 65
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=26.76 E-value=40 Score=21.98 Aligned_cols=19 Identities=11% Similarity=0.478 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..++..
T Consensus 102 ~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 102 DTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3678999999999988764
No 66
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=26.33 E-value=43 Score=21.30 Aligned_cols=17 Identities=12% Similarity=0.444 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHHhh
Q 031331 134 NMPEKVQIWRAVLTEAS 150 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~ 150 (161)
++++..+.|..||.++.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45789999999999864
No 67
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=26.23 E-value=61 Score=21.42 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=30.8
Q ss_pred HHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeeccccc
Q 031331 35 AAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYAS 80 (161)
Q Consensus 35 ~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 80 (161)
..|+-.|+..+... ..-+.+.+.+.+.+++.++.|++++++.+.
T Consensus 22 ~GFrLaGi~~~~~~--~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 22 IGFMLAGISDIYEV--TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHTTCCCEEEC--CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHcCCCcccCC--CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34455688776511 123456667777788889999999999886
No 68
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=26.17 E-value=1.6e+02 Score=23.05 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCC----eeeeecCcccCcccchHHHHHhhhc---CcEEEEEeecccccC--hhhHHHHHHHHHH
Q 031331 29 FTSHLHAAFCRKN----IKTFIDEELSRGDEISQAVLNAMKG---SKISVIIFSKRYASS--KWCLDELVEILEC 94 (161)
Q Consensus 29 fv~~L~~~L~~~g----i~~f~d~~~~~G~~i~~~i~~aI~~---S~~~Ivv~S~~y~~S--~wc~~El~~~~~~ 94 (161)
.+..|.+.|..+| +.|++- +.-|.+..++..+.+.+ .++.++.+.|.|..+ .-..+++..++..
T Consensus 63 q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~~ 135 (310)
T 2h1v_A 63 QAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 135 (310)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHHh
Confidence 4566777776543 455442 55566655555555542 567888889988654 3355666666543
No 69
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.56 E-value=42 Score=21.33 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..+..-
T Consensus 95 ~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 95 SSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 4578899999999988753
No 70
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=24.88 E-value=1.7e+02 Score=25.96 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=43.5
Q ss_pred cHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHHhhCCceeeeEEe
Q 031331 28 NFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFY 107 (161)
Q Consensus 28 ~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPIfy 107 (161)
..+..|..+|+++|+.|..... ..+.+...-.++++..+|+|-+-. ..++...++.. ..=||||.
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~s------~~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~~----~~~iPVFl 81 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPND------RDDLLKLIENNARLCGVIFDWDKY-----NLELCEEISKM----NENLPLYA 81 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCSS------HHHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHHH----CTTCEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEeCC------HHHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHHh----CCCCCEEE
Confidence 4678899999999999966432 233333333578899999996642 23444333322 35688987
Q ss_pred ecCc
Q 031331 108 QVDP 111 (161)
Q Consensus 108 ~v~p 111 (161)
-.+.
T Consensus 82 ~~~~ 85 (715)
T 3n75_A 82 FANT 85 (715)
T ss_dssp ECCT
T ss_pred EecC
Confidence 4433
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=24.81 E-value=1.7e+02 Score=20.22 Aligned_cols=61 Identities=10% Similarity=0.225 Sum_probs=31.9
Q ss_pred Cc-ccchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHHhhCCceeeeEEeecCccccc
Q 031331 52 RG-DEISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVR 115 (161)
Q Consensus 52 ~G-~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPIfy~v~p~~v~ 115 (161)
|| +.+.......++.++.+|+|++-.-. ....++...++........-+||++-....|+.
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTCE---KSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTCH---HHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 55 34445566778899999999986433 333444333332222111234555544555553
No 72
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=24.79 E-value=47 Score=15.74 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHH
Q 031331 136 PEKVQIWRAVLTE 148 (161)
Q Consensus 136 ~~~~~~W~~al~~ 148 (161)
-+-||+|++-|.-
T Consensus 7 vDSV~rWmeDLr~ 19 (22)
T 3ro3_B 7 VDSVQRWMEDLKL 19 (26)
T ss_pred hHHHHHHHHHHHh
Confidence 4679999998864
No 73
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.59 E-value=41 Score=21.88 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031331 134 NMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (161)
.+++..+.|..||..+....
T Consensus 87 ~s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 87 TDAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 36788999999999877544
No 74
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=24.52 E-value=43 Score=20.84 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
.+++..+.|..||..+..
T Consensus 88 ~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 88 TSPAEARDWVDQISFLLK 105 (108)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 357889999999998753
No 75
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.47 E-value=42 Score=21.30 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031331 134 NMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~~ 153 (161)
.+++..+.|..||..+....
T Consensus 86 ~s~~e~~~Wi~ai~~~~~~~ 105 (115)
T 2dn6_A 86 SDKKKKQEWIQAIHSTIHLL 105 (115)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 35788999999999887643
No 76
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.20 E-value=47 Score=21.63 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHHhh
Q 031331 134 NMPEKVQIWRAVLTEAS 150 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~ 150 (161)
.+++..+.|..||..+.
T Consensus 87 ~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 87 ATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 46788999999999875
No 77
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=23.91 E-value=43 Score=21.32 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..+..-
T Consensus 94 ~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 94 QDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp SSHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 4578899999999987654
No 78
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=23.72 E-value=44 Score=21.60 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
.+++..+.|..||..+..
T Consensus 103 ~s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 103 PSPEEKEEWMKSIKASIS 120 (127)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 357889999999998764
No 79
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=23.50 E-value=1.5e+02 Score=24.19 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=37.3
Q ss_pred CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhh-cCcEEEEEee
Q 031331 12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMK-GSKISVIIFS 75 (161)
Q Consensus 12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S 75 (161)
...||++...+++. ...+-.|...|.++||++-+|.. .+..+...+..|=+ +.+. ++|+.
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~-~viiG 425 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPL-VAIIG 425 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCCE-EEECC
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCE-EEEEC
Confidence 45789998876654 34577899999999999966532 22344444544433 3443 34443
No 80
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=23.31 E-value=78 Score=26.30 Aligned_cols=61 Identities=10% Similarity=0.167 Sum_probs=40.4
Q ss_pred cCcCcccHHHHHHHHHhcC-CeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEee-cccccChh
Q 031331 22 GEDTRDNFTSHLHAAFCRK-NIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFS-KRYASSKW 83 (161)
Q Consensus 22 ~~D~r~~fv~~L~~~L~~~-gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S-~~y~~S~w 83 (161)
..|.|.+=+-.|...|.++ |..+...+- .... .....+.+++++++..|++-. +.|.+-.|
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 392 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSDHSEFKNLSD 392 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSCCGGGTSCCG
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecCCHHHhccCH
Confidence 4678888889999999999 998876443 3322 333456788999997554443 23444333
No 81
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=22.77 E-value=48 Score=20.68 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=12.7
Q ss_pred CChHHHHHHHHHHHH
Q 031331 134 NMPEKVQIWRAVLTE 148 (161)
Q Consensus 134 ~~~~~~~~W~~al~~ 148 (161)
.+++..+.|..||..
T Consensus 91 ~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 91 KDDEEMNTWIQAISS 105 (106)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 467899999999975
No 82
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=22.57 E-value=1.6e+02 Score=24.17 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=31.8
Q ss_pred CccCcCcccHHHHHHHHHhcCCeeeeecCcccC--c-ccchHHHHHhhhcCcEEEEEe
Q 031331 20 FRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSR--G-DEISQAVLNAMKGSKISVIIF 74 (161)
Q Consensus 20 y~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~--G-~~i~~~i~~aI~~S~~~Ivv~ 74 (161)
+...|....++..|.+++++.|+.+-....+.. + ..+...+.+.|+.+..-|||+
T Consensus 192 ~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~ 249 (479)
T 3sm9_A 192 ASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVL 249 (479)
T ss_dssp EESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEE
T ss_pred EecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 444443456788899999999987654443432 2 233334436677655444443
No 83
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=21.92 E-value=1.4e+02 Score=24.92 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=37.1
Q ss_pred CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhh-cCcEEEEEee
Q 031331 12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMK-GSKISVIIFS 75 (161)
Q Consensus 12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S 75 (161)
...||||..-+++. ...+-.|...|.++||++-+|.. .+..+..++..|=+ +... ++|+-
T Consensus 418 ~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~-~viiG 478 (517)
T 4g85_A 418 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPL-VAIIG 478 (517)
T ss_dssp CCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS--SSCCHHHHHHHHHHHCCCE-EEEEC
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCE-EEEEC
Confidence 45889987765553 35677899999999999966532 22344445544433 3443 44443
No 84
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=21.90 E-value=2e+02 Score=19.81 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhh-cCcEEEEE
Q 031331 26 RDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMK-GSKISVII 73 (161)
Q Consensus 26 r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv 73 (161)
...++..+...|...|+++=+|. ..+++.+...|.++-. +....|||
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 35899999999999999997654 1226666666665543 34444433
No 85
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=21.84 E-value=50 Score=21.47 Aligned_cols=18 Identities=17% Similarity=0.566 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
.+++..+.|..||..+..
T Consensus 93 ~s~~e~~~Wi~al~~~~~ 110 (125)
T 1unq_A 93 ETPEEREEWTTAIQTVAD 110 (125)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 467889999999998764
No 86
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.75 E-value=57 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHHHHhh
Q 031331 134 NMPEKVQIWRAVLTEAS 150 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~ 150 (161)
.+++..+.|..||..+.
T Consensus 82 ~s~~e~~~Wi~~l~~~~ 98 (115)
T 2cod_A 82 EKEEERNDWISILLNAL 98 (115)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35788999999999887
No 87
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=21.67 E-value=1.1e+02 Score=24.64 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=36.5
Q ss_pred CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCcccCcccchHHHHHhhh-cCcEEEEEeec
Q 031331 12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEELSRGDEISQAVLNAMK-GSKISVIIFSK 76 (161)
Q Consensus 12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~ 76 (161)
..++|+|..-+++ ....+..|+..|.++|+++-+|.. +..+...+..|-. +.. .++++.+
T Consensus 328 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p-~~iiig~ 388 (420)
T 1qe0_A 328 ENLDLFIVTMGDQ-ADRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAK-FTIVIGD 388 (420)
T ss_dssp CCCSEEEEECHHH-HHHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCS-EEEEECH
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCC-EEEEECc
Confidence 3478987654433 235678899999999999988763 2334434443333 334 4444443
No 88
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=21.48 E-value=40 Score=23.22 Aligned_cols=44 Identities=7% Similarity=-0.043 Sum_probs=30.4
Q ss_pred eecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhccc
Q 031331 107 YQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNLS 153 (161)
Q Consensus 107 y~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~ 153 (161)
++|+|.+.......+-..+.+. .. -+++...-|.+++..|++.-
T Consensus 93 ~~V~p~~f~~~~~~Ll~~l~~~-~~--~t~e~~~AW~~~~~~v~~~l 136 (147)
T 2nrl_A 93 HKIPINNFKLISEVLVKVMQEK-AG--LDAGGQTALRNVMGIIIADL 136 (147)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHH-SC--CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh-cc--CCHHHHHHHHHHHHHHHHHH
Confidence 4577877776555555555554 22 36888999999999988743
No 89
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=21.40 E-value=58 Score=22.54 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..++..
T Consensus 94 ~s~~e~~~Wi~ai~~~~~~ 112 (168)
T 2j59_M 94 EDRDDMLAWIKTIQESSNL 112 (168)
T ss_dssp SSHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4688999999999988764
No 90
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=21.33 E-value=1.1e+02 Score=25.48 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=40.9
Q ss_pred CcccEEEcCccCcCcccHHHHHHHHHhcCCeeeeecCc-ccCcccchHHHHHhhhcCcEEEEEeec
Q 031331 12 SKYDVFLSFRGEDTRDNFTSHLHAAFCRKNIKTFIDEE-LSRGDEISQAVLNAMKGSKISVIIFSK 76 (161)
Q Consensus 12 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~ 76 (161)
...||+|-.-+++. ...+..+...|+++|+++-+|.. -..+..+...+..|-+.---.++|+.+
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~ 417 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGE 417 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECc
Confidence 34788876544442 45678899999999999988653 012566777776665543334445543
No 91
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.25 E-value=60 Score=20.61 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..+...
T Consensus 84 ~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 84 AFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999987654
No 92
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=21.19 E-value=51 Score=20.56 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..+..-
T Consensus 76 ~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 76 VNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp SSHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4678899999999987543
No 93
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=21.07 E-value=48 Score=21.60 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=23.5
Q ss_pred HhhhcCcEEEEEeecccccChhhHHHHHHHHHHH
Q 031331 62 NAMKGSKISVIIFSKRYASSKWCLDELVEILECK 95 (161)
Q Consensus 62 ~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~ 95 (161)
.-+.++.++++||||+=.-..||--.+..++++.
T Consensus 35 svLCda~Valiifs~~gk~~~f~s~~~~~il~rY 68 (90)
T 3p57_A 35 SVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (90)
T ss_dssp HHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred HhccCCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence 3467899999999998554555544566666654
No 94
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=20.93 E-value=1.8e+02 Score=18.92 Aligned_cols=61 Identities=5% Similarity=0.111 Sum_probs=32.7
Q ss_pred Ccc-cchHHHHHhhhcCcEEEEEeecccccChhhHHHHHHHHHHHhhCCceeeeEEeecCccccc
Q 031331 52 RGD-EISQAVLNAMKGSKISVIIFSKRYASSKWCLDELVEILECKNMNGQTVVPVFYQVDPSDVR 115 (161)
Q Consensus 52 ~G~-~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPIfy~v~p~~v~ 115 (161)
||. .+.......+..++.+|+|++.+-. ..+.++...+.........-+||+.-....|+.
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITNE---ESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTCH---HHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 553 3444556678899999999996533 334444444333222222234555433455544
No 95
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=20.81 E-value=47 Score=23.03 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHhcCCeeee
Q 031331 27 DNFTSHLHAAFCRKNIKTF 45 (161)
Q Consensus 27 ~~fv~~L~~~L~~~gi~~f 45 (161)
..|+..|...|+++|++|=
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~ 26 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVK 26 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHCCeeec
Confidence 4699999999999999873
No 96
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=20.79 E-value=61 Score=20.85 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031331 134 NMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~~ 152 (161)
.+++..+.|..||..+...
T Consensus 94 ~s~~e~~~W~~al~~~i~~ 112 (125)
T 1eaz_A 94 DSPEEMHSWIKAVSGAIVA 112 (125)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3578899999999987643
No 97
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=20.62 E-value=56 Score=22.40 Aligned_cols=41 Identities=5% Similarity=0.178 Sum_probs=28.2
Q ss_pred eecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 031331 107 YQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 107 y~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~ 151 (161)
++|+|.+.......+-..+.+. .-+++...-|.+++..|++
T Consensus 104 ~~V~p~~f~~~~~~ll~~l~~~----~~t~e~~~AW~k~~~~va~ 144 (146)
T 3g46_A 104 RKISAAEFGKINGPIKKVLASK----NFGDKYANAWAKLVAVVQA 144 (146)
T ss_dssp TTCCHHHHGGGHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHH
Confidence 4677877765444444444444 3468999999999998875
No 98
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=20.62 E-value=53 Score=22.29 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=29.3
Q ss_pred eecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc
Q 031331 107 YQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 107 y~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (161)
++|+|.+.......+-..+.+.... .-+++...-|.+++..|++.
T Consensus 88 ~gV~p~~f~~~~~~Ll~~l~~~lg~-~~t~e~~~AW~~~~~~i~~~ 132 (146)
T 2vhb_A 88 AGVAAAHYPIVGQELLGAIKEVLGD-AATDDILDAWGKAYGVIADV 132 (146)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCc-cCCHHHHHHHHHHHHHHHHH
Confidence 3677887765444444555443221 13588889999999998764
No 99
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.59 E-value=61 Score=20.83 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
.+++..+.|..||..+..
T Consensus 84 ~s~~e~~~Wi~al~~~~~ 101 (114)
T 2da0_A 84 EDEQDYVAWISVLTNSKE 101 (114)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 357889999999997653
No 100
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=20.50 E-value=57 Score=21.82 Aligned_cols=18 Identities=11% Similarity=0.394 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031331 134 NMPEKVQIWRAVLTEASN 151 (161)
Q Consensus 134 ~~~~~~~~W~~al~~v~~ 151 (161)
.+++..+.|..||..+..
T Consensus 107 ~s~~e~~~Wi~aI~~~i~ 124 (129)
T 2p0d_A 107 DHETELRAWHRALRTVIE 124 (129)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 467899999999998754
No 101
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=20.26 E-value=80 Score=26.28 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=41.0
Q ss_pred cCcCcccHHHHHHHHHhcCCeeeee-cCccc-------CcccchHHHHHhhhcCcEEEEEee-cccccChh
Q 031331 22 GEDTRDNFTSHLHAAFCRKNIKTFI-DEELS-------RGDEISQAVLNAMKGSKISVIIFS-KRYASSKW 83 (161)
Q Consensus 22 ~~D~r~~fv~~L~~~L~~~gi~~f~-d~~~~-------~G~~i~~~i~~aI~~S~~~Ivv~S-~~y~~S~w 83 (161)
..|.|.+=+-.|.+.|.++|..|.. |.... ++-.+.+...+++++++..|++-. +.|.+=.|
T Consensus 336 ~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 336 TDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp SCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 4577888788999999999998865 33221 244455567788999997554433 33544333
No 102
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=20.12 E-value=58 Score=27.13 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=31.3
Q ss_pred cCcCcccHHHHHHHHHhcCCeeeeecCc-cc----CcccchHHHHHhhhcCcEEE
Q 031331 22 GEDTRDNFTSHLHAAFCRKNIKTFIDEE-LS----RGDEISQAVLNAMKGSKISV 71 (161)
Q Consensus 22 ~~D~r~~fv~~L~~~L~~~gi~~f~d~~-~~----~G~~i~~~i~~aI~~S~~~I 71 (161)
..|.|.+=+-.|.+.|..+|..|...+- .. .|..+.+.+.++++++++.|
T Consensus 346 tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 346 SDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp ------CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred CcchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 4577888888999999999988765332 32 23334567788888888744
No 103
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=20.09 E-value=80 Score=21.63 Aligned_cols=45 Identities=4% Similarity=0.056 Sum_probs=30.5
Q ss_pred eecCcccccccccchHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc
Q 031331 107 YQVDPSDVRNQTGCFADAFVEHEEQFKNMPEKVQIWRAVLTEASNL 152 (161)
Q Consensus 107 y~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~ 152 (161)
++|+|.+.......+-..+.+.... .-+++...-|.+++..|++.
T Consensus 105 ~gV~p~~f~~~~~~ll~~l~~~lg~-~~t~e~~~AW~k~~~~va~~ 149 (150)
T 1sct_A 105 RKISGDAFGAIVEPMKETLKARMGN-YYSDDVAGAWAALVGVVQAA 149 (150)
T ss_dssp TTCCHHHHGGGHHHHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHh
Confidence 4677887776555555555444332 13588899999999998864
Done!