Query 031332
Match_columns 161
No_of_seqs 117 out of 427
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:36:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2592 Tumor differentially e 100.0 2.9E-54 6.4E-59 366.2 8.1 155 1-161 258-425 (426)
2 PF03348 Serinc: Serine incorp 100.0 1.3E-51 2.8E-56 359.8 8.4 159 1-161 257-429 (429)
3 PF13334 DUF4094: Domain of un 67.3 6.5 0.00014 27.8 2.9 21 98-118 6-28 (95)
4 KOG0539 Sphingolipid fatty aci 34.4 32 0.00069 28.2 2.2 47 105-152 45-98 (240)
5 PF13996 YobH: YobH-like prote 32.7 58 0.0013 21.8 2.9 21 96-116 4-24 (70)
6 PF11169 DUF2956: Protein of u 31.3 45 0.00098 24.0 2.3 18 131-148 85-102 (103)
7 PF08409 DUF1736: Domain of un 30.4 1.7E+02 0.0037 19.9 5.0 32 127-158 17-49 (80)
8 PF12513 SUV3_C: Mitochondrial 28.0 23 0.00051 21.6 0.3 19 142-160 10-29 (49)
9 PF11846 DUF3366: Domain of un 24.6 1.9E+02 0.0041 22.0 5.0 25 91-115 20-44 (193)
10 PF09500 YiiD_Cterm: Putative 23.1 26 0.00056 26.6 -0.1 17 100-116 46-62 (144)
11 PF04304 DUF454: Protein of un 22.6 84 0.0018 20.2 2.3 41 97-149 28-70 (71)
12 PF12911 OppC_N: N-terminal TM 21.3 1.1E+02 0.0024 18.5 2.6 23 136-158 19-41 (56)
13 PF10661 EssA: WXG100 protein 21.1 38 0.00082 25.7 0.4 19 31-49 123-141 (145)
No 1
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=100.00 E-value=2.9e-54 Score=366.23 Aligned_cols=155 Identities=45% Similarity=0.812 Sum_probs=130.4
Q ss_pred CeEEEecccCCCCCCccCCCccCCc------------cccchhhHHHHHHHHhhheeeeeecCccccccCCCCCCCCCCC
Q 031332 1 MYLCYSGLSSEPRDYECNGLHRHSK------------AVSTGSLTLGLITTVLSVVYSAVRAGSSTTLLSPPSSPRAGGG 68 (161)
Q Consensus 1 ~YLt~SAlsseP~~~~Cnp~~~~~~------------~~~~~~~i~g~~~~~~~v~ys~~r~~~~~~~~~~~~~~~~~~~ 68 (161)
||||||||+||| |++|||..+..+ .....+.++|++++++||+|+++|+++++++.. .. +.+.+
T Consensus 258 ~YLt~SAlss~P-e~~CNP~~~~~~~~t~~~~~~~~~~~~~~~~iiGli~~~lcilYsalR~~s~~~l~k-~~--~~~~e 333 (426)
T KOG2592|consen 258 MYLTWSALSSEP-ENGCNPWLNSSKNVTITVGPGASVSTFDATNIIGLIFLLLCILYSALRASSRTQLRK-LT--RSNEE 333 (426)
T ss_pred HHHHHHHHhcCC-ccccChhhhcccccccccCcccccccccccchHHHHHHHHHHHHHHhhccccccccc-cc--ccccc
Confidence 699999999999 899999733221 123457899999999999999999999888742 22 22344
Q ss_pred CCCCCC-CccchhhhhccCCCcceehhHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeecCcchhhhhHHHHHHHHHHHH
Q 031332 69 KPLLPM-DKADEVEEKEKAKPVTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYM 147 (161)
Q Consensus 69 ~~~~~~-~~~~~~~~~dE~~~v~YsYsfFHfvf~LaSlYv~M~lTnW~~~~~~~~~~~~~~w~s~WVKi~SsW~c~~LY~ 147 (161)
++.+++ +++ +++.|||++||.|||+||||||+|||+|+|||||||++++ ++.+.++.+|+++||||+++|+|.+||+
T Consensus 334 ~~~l~~~dG~-~~~~d~Ek~GV~YsYsfFHfvf~LASlyvmmtLTnW~~~~-~~~~~v~~~w~~vWVKI~ssWic~~LY~ 411 (426)
T KOG2592|consen 334 EPLLPDEDGG-GRANDNEKDGVTYSYSFFHFVFVLASLYVMMTLTNWYTPD-EDIWFVKSSWASVWVKIVSSWICSGLYL 411 (426)
T ss_pred ccCccCCCCC-cccccccCCCeeEeeeHHHHHHHHHHHHHHHHhccccCCC-CceeEEeccchHHHHHHHHHHHHHHHHH
Confidence 555653 333 4678999999999999999999999999999999999995 3347899999999999999999999999
Q ss_pred HHhhhcccCCCCCC
Q 031332 148 WSLVAPILFPDREF 161 (161)
Q Consensus 148 WtLvAP~i~pdRdF 161 (161)
||||||+++|||||
T Consensus 412 WTlVAPli~p~Rdf 425 (426)
T KOG2592|consen 412 WTLVAPLILPDRDF 425 (426)
T ss_pred HHHhhhhhcccccc
Confidence 99999999999998
No 2
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=100.00 E-value=1.3e-51 Score=359.77 Aligned_cols=159 Identities=43% Similarity=0.724 Sum_probs=126.0
Q ss_pred CeEEEecccCCCCCCccCCCccCCccccchhhHHHHHHHHhhheeeeeecCccccccCCC--CCCCCCCCC---------
Q 031332 1 MYLCYSGLSSEPRDYECNGLHRHSKAVSTGSLTLGLITTVLSVVYSAVRAGSSTTLLSPP--SSPRAGGGK--------- 69 (161)
Q Consensus 1 ~YLt~SAlsseP~~~~Cnp~~~~~~~~~~~~~i~g~~~~~~~v~ys~~r~~~~~~~~~~~--~~~~~~~~~--------- 69 (161)
||||||||+||| |++|||...++.+..+.+.++|+++++++++|+++|++++++...-. ...+.+..+
T Consensus 257 ~yL~~SAlss~P-~~~CNp~~~~~~~~~~~~~iig~i~~~~~v~yss~ra~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (429)
T PF03348_consen 257 TYLTWSALSSEP-DKECNPSGSRSGSWNTWQSIIGLIFTFVSVLYSSFRASSSSQVGKLQLSSDSEGEQPKCCFNEDRDQ 335 (429)
T ss_pred HHHHHHHHHcCC-CcccCCcccccCCcchHHHHHHHHHHHHHHHHhccccccccchhhhhccCccccccCcccccccccc
Confidence 699999999999 88999984455667788999999999999999999999888741100 000000000
Q ss_pred CCCCCCcc---chhhhhccCCCcceehhHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeecCcchhhhhHHHHHHHHHHH
Q 031332 70 PLLPMDKA---DEVEEKEKAKPVTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALY 146 (161)
Q Consensus 70 ~~~~~~~~---~~~~~~dE~~~v~YsYsfFHfvf~LaSlYv~M~lTnW~~~~~~~~~~~~~~w~s~WVKi~SsW~c~~LY 146 (161)
...+++++ +++..|||+++++|||+|||+||+|||||+||+||||+++ .++.+.++.+|+++||||+|+|+|++||
T Consensus 336 ~~~~~~e~~~~~~~~~d~e~~~~~y~y~~FH~vf~las~Y~am~lTnW~~~-~~~~~~~~~~~~~~Wvki~s~W~~~~LY 414 (429)
T PF03348_consen 336 ADRADVEEGSLPQSVIDDEEDGVSYSYSFFHFVFALASMYVAMLLTNWYSP-DADFETVGSGWASVWVKIASSWVCLLLY 414 (429)
T ss_pred ccccchhccccCcccccccccCCcccHHHHHHHHHHHHHHHHHHhccccCC-ccccccccCCcceehHHHHHHHHHHHHH
Confidence 00001111 1123578999999999999999999999999999999998 4444578999999999999999999999
Q ss_pred HHHhhhcccCCCCCC
Q 031332 147 MWSLVAPILFPDREF 161 (161)
Q Consensus 147 ~WtLvAP~i~pdRdF 161 (161)
+||||||+|+|||||
T Consensus 415 ~WtLvAP~~~p~RdF 429 (429)
T PF03348_consen 415 IWTLVAPLLFPDRDF 429 (429)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999999999999998
No 3
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=67.33 E-value=6.5 Score=27.80 Aligned_cols=21 Identities=29% Similarity=0.718 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhcC--CCCCC
Q 031332 98 IIFSLASMYSAMLLTG--WSTSV 118 (161)
Q Consensus 98 fvf~LaSlYv~M~lTn--W~~~~ 118 (161)
++++++|+.+-|++|| |..|+
T Consensus 6 l~Lc~~SF~~G~lft~R~W~~pe 28 (95)
T PF13334_consen 6 LLLCIASFCAGMLFTNRMWTVPE 28 (95)
T ss_pred HHHHHHHHHHHHHHhcccccCCc
Confidence 6899999999999999 97663
No 4
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=34.39 E-value=32 Score=28.16 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCCCCC------C-CceeecCcchhhhhHHHHHHHHHHHHHHhhh
Q 031332 105 MYSAMLLTGWSTSVGE------S-GKLVDVGWPSVWVRILTGWATAALYMWSLVA 152 (161)
Q Consensus 105 lYv~M~lTnW~~~~~~------~-~~~~~~~w~s~WVKi~SsW~c~~LY~WtLvA 152 (161)
..-+||-|-|....-. - ......++. .=+.+++.|+|+++++|||+-
T Consensus 45 flE~lTkT~Ww~VP~iWlPvVvy~~~~~t~~~~-~s~~~~~~~f~~Gvf~WTl~E 98 (240)
T KOG0539|consen 45 FLEPLTKTVWWVVPLIWLPVVVYGFLSFTTSYN-DSVPVFSGLFVIGVFTWTLIE 98 (240)
T ss_pred HHHHhhcchhheehhhhhhhhhheeeeeccccc-chhhhhhHHHHHHHHHHHHHH
Confidence 3467888999863110 0 001111111 114478999999999999973
No 5
>PF13996 YobH: YobH-like protein
Probab=32.72 E-value=58 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 031332 96 FHIIFSLASMYSAMLLTGWST 116 (161)
Q Consensus 96 FHfvf~LaSlYv~M~lTnW~~ 116 (161)
+-.++.+|-.|++|++++.+-
T Consensus 4 ~r~~~~l~i~~~~ll~SGYGv 24 (70)
T PF13996_consen 4 IRTVILLAIIWLALLFSGYGV 24 (70)
T ss_pred HHHHHHHHHHHHHHHHcccce
Confidence 557889999999999999974
No 6
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.25 E-value=45 Score=24.02 Aligned_cols=18 Identities=17% Similarity=0.564 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 031332 131 SVWVRILTGWATAALYMW 148 (161)
Q Consensus 131 s~WVKi~SsW~c~~LY~W 148 (161)
-=|+=.+-||++++.|++
T Consensus 85 LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 85 LPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 349999999999999985
No 7
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=30.42 E-value=1.7e+02 Score=19.92 Aligned_cols=32 Identities=31% Similarity=0.287 Sum_probs=26.3
Q ss_pred cCcchhhhhHHHHHHHHHHHHHHhhhccc-CCC
Q 031332 127 VGWPSVWVRILTGWATAALYMWSLVAPIL-FPD 158 (161)
Q Consensus 127 ~~w~s~WVKi~SsW~c~~LY~WtLvAP~i-~pd 158 (161)
+--++.+.|..+----..+|+|-|+.|.- +.|
T Consensus 17 a~~~~~~tR~LT~~yl~~~n~~LLl~P~~L~~D 49 (80)
T PF08409_consen 17 AFAPSLLTRWLTYNYLPAFNLWLLLFPSWLCFD 49 (80)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHCccccCCc
Confidence 34557899999999999999999999983 444
No 8
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=28.00 E-value=23 Score=21.58 Aligned_cols=19 Identities=53% Similarity=1.024 Sum_probs=14.2
Q ss_pred HHHHHHH-HhhhcccCCCCC
Q 031332 142 TAALYMW-SLVAPILFPDRE 160 (161)
Q Consensus 142 c~~LY~W-tLvAP~i~pdRd 160 (161)
++-+|+| +.=-|-.||||+
T Consensus 10 ~l~lYlWLs~Rfp~~F~d~e 29 (49)
T PF12513_consen 10 VLDLYLWLSYRFPDVFPDRE 29 (49)
T ss_dssp HHHHHHHHHCC-TTTSTTHH
T ss_pred HHHHHHHHHHHcccccCCHH
Confidence 5678999 666788898874
No 9
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.62 E-value=1.9e+02 Score=22.05 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=16.9
Q ss_pred eehhHHHHHHHHHHHHHHHHhcCCC
Q 031332 91 YSYAFFHIIFSLASMYSAMLLTGWS 115 (161)
Q Consensus 91 YsYsfFHfvf~LaSlYv~M~lTnW~ 115 (161)
--|+.||.++++.-.++.--.++|.
T Consensus 20 L~ysyfl~~~~l~Lg~~~~~~~~~~ 44 (193)
T PF11846_consen 20 LWYSYFLWPFALLLGLLPDPARRLR 44 (193)
T ss_pred HHHHHHHHHHHHHHHHHhccccccc
Confidence 4578899999887776554444444
No 10
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=23.13 E-value=26 Score=26.59 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCCC
Q 031332 100 FSLASMYSAMLLTGWST 116 (161)
Q Consensus 100 f~LaSlYv~M~lTnW~~ 116 (161)
+|=+|+|..|+|++|.-
T Consensus 46 ~FgGSl~slatLaGW~l 62 (144)
T PF09500_consen 46 MFGGSLYSLATLAGWGL 62 (144)
T ss_dssp B-HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 47899999999999973
No 11
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=22.61 E-value=84 Score=20.23 Aligned_cols=41 Identities=27% Similarity=0.463 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCceeecCcchhhhhHH--HHHHHHHHHHHH
Q 031332 97 HIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIL--TGWATAALYMWS 149 (161)
Q Consensus 97 Hfvf~LaSlYv~M~lTnW~~~~~~~~~~~~~~w~s~WVKi~--SsW~c~~LY~Wt 149 (161)
-=+.++++|.++|.++-++.. +..|+|++ ..++|...|+|+
T Consensus 28 ~K~~a~~~m~~~~~~s~~~~~------------~~~~~~~~l~~~~~~~~~~i~~ 70 (71)
T PF04304_consen 28 AKIRALLMMWLSMGISAFFFV------------PNLWVRIVLAAILLIVAIYILR 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHc------------cHHHHHHHHHHHHHHHHHHhee
Confidence 346788889999988866543 12466654 567777777775
No 12
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.34 E-value=1.1e+02 Score=18.52 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCCC
Q 031332 136 ILTGWATAALYMWSLVAPILFPD 158 (161)
Q Consensus 136 i~SsW~c~~LY~WtLvAP~i~pd 158 (161)
+++.++.+++.+=.++||.+.|.
T Consensus 19 ~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 19 VIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 67788889999999999999876
No 13
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=21.14 E-value=38 Score=25.72 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=13.6
Q ss_pred hhHHHHHHHHhhheeeeee
Q 031332 31 SLTLGLITTVLSVVYSAVR 49 (161)
Q Consensus 31 ~~i~g~~~~~~~v~ys~~r 49 (161)
..|.|+++++++++|..+|
T Consensus 123 ~~i~g~ll~i~~giy~~~r 141 (145)
T PF10661_consen 123 LSIGGILLAICGGIYVVLR 141 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888776
Done!