Query 031332
Match_columns 161
No_of_seqs 117 out of 427
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_M VIIIB, IX, cytochrome C 24.8 42 0.0014 19.8 1.9 16 29-44 12-27 (46)
2 2ab9_A Pro-SFTI-1; protein, be 24.2 22 0.00074 18.8 0.5 7 152-158 22-28 (31)
3 2o8m_C Protease; NS3, NS4A, vi 21.7 26 0.00088 18.3 0.5 8 153-160 17-24 (26)
4 1r7c_A Genome polyprotein; mem 20.8 69 0.0024 17.3 2.1 15 132-146 3-17 (31)
5 3j1r_A Archaeal adhesion filam 19.0 47 0.0016 17.2 1.1 9 140-148 16-24 (26)
6 2lat_A Dolichyl-diphosphooligo 12.9 86 0.003 17.6 1.3 20 29-48 9-28 (37)
7 1rkl_A Dolichyl-diphosphooligo 12.7 89 0.003 17.4 1.3 20 29-48 9-28 (36)
8 2y69_M Cytochrome C oxidase po 10.0 1.2E+02 0.0042 19.4 1.5 16 29-44 36-51 (70)
9 2rdd_B UPF0092 membrane protei 7.9 2.9E+02 0.0098 14.9 2.3 17 95-111 6-22 (37)
10 3kdp_B Sodium/potassium-transp 5.7 4.1E+02 0.014 21.2 3.0 16 96-111 21-38 (286)
No 1
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=24.77 E-value=42 Score=19.81 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=12.0
Q ss_pred chhhHHHHHHHHhhhe
Q 031332 29 TGSLTLGLITTVLSVV 44 (161)
Q Consensus 29 ~~~~i~g~~~~~~~v~ 44 (161)
.....+|+.++|++++
T Consensus 12 ~~E~aigl~v~f~~~L 27 (46)
T 1v54_M 12 PKEQAIGLSVTFLSFL 27 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567788888888775
No 2
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=24.15 E-value=22 Score=18.78 Aligned_cols=7 Identities=71% Similarity=1.412 Sum_probs=4.1
Q ss_pred hcccCCC
Q 031332 152 APILFPD 158 (161)
Q Consensus 152 AP~i~pd 158 (161)
-|+||||
T Consensus 22 ppicfpd 28 (31)
T 2ab9_A 22 PPICFPD 28 (31)
T ss_dssp SCSSSSC
T ss_pred CCcccCC
Confidence 4566665
No 3
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=21.66 E-value=26 Score=18.26 Aligned_cols=8 Identities=25% Similarity=0.912 Sum_probs=4.7
Q ss_pred cccCCCCC
Q 031332 153 PILFPDRE 160 (161)
Q Consensus 153 P~i~pdRd 160 (161)
|++-|||+
T Consensus 17 p~v~Pdre 24 (26)
T 2o8m_C 17 PAIIPKKX 24 (26)
T ss_dssp CEECCCC-
T ss_pred eEEcCCcC
Confidence 56667775
No 4
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=20.76 E-value=69 Score=17.30 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHH
Q 031332 132 VWVRILTGWATAALY 146 (161)
Q Consensus 132 ~WVKi~SsW~c~~LY 146 (161)
-|.+-+=.|+|-.||
T Consensus 3 swL~~iwdWvctvLs 17 (31)
T 1r7c_A 3 SWLRDIWDWICEVLS 17 (31)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 488999999999998
No 5
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=19.00 E-value=47 Score=17.17 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=6.1
Q ss_pred HHHHHHHHH
Q 031332 140 WATAALYMW 148 (161)
Q Consensus 140 W~c~~LY~W 148 (161)
=..++||+|
T Consensus 16 ~aaVllylW 24 (26)
T 3j1r_A 16 AAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345677887
No 6
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=12.92 E-value=86 Score=17.58 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.9
Q ss_pred chhhHHHHHHHHhhheeeee
Q 031332 29 TGSLTLGLITTVLSVVYSAV 48 (161)
Q Consensus 29 ~~~~i~g~~~~~~~v~ys~~ 48 (161)
...+.+|...+++.++|.-+
T Consensus 9 ~lan~lG~~~~~LIVlYH~v 28 (37)
T 2lat_A 9 IFANMLGVSLFLLVVLYHYV 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999865
No 7
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=12.74 E-value=89 Score=17.43 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHhhheeeee
Q 031332 29 TGSLTLGLITTVLSVVYSAV 48 (161)
Q Consensus 29 ~~~~i~g~~~~~~~v~ys~~ 48 (161)
...+.+|...+++.++|.-+
T Consensus 9 ~lan~lG~~~~~LIvlYH~v 28 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVIYHAV 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999865
No 8
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=10.01 E-value=1.2e+02 Score=19.37 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=12.7
Q ss_pred chhhHHHHHHHHhhhe
Q 031332 29 TGSLTLGLITTVLSVV 44 (161)
Q Consensus 29 ~~~~i~g~~~~~~~v~ 44 (161)
..+..+|+.++|++++
T Consensus 36 ~~E~aigltv~f~~~L 51 (70)
T 2y69_M 36 PKEQAIGLSVTFLSFL 51 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677889998888875
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=7.95 E-value=2.9e+02 Score=14.88 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031332 95 FFHIIFSLASMYSAMLL 111 (161)
Q Consensus 95 fFHfvf~LaSlYv~M~l 111 (161)
+.-++.+++-+|++|.-
T Consensus 6 ~l~~v~~~~ifYFl~iR 22 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILR 22 (37)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34456667788888753
No 10
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=5.70 E-value=4.1e+02 Score=21.22 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=8.0
Q ss_pred HHHHH--HHHHHHHHHHh
Q 031332 96 FHIIF--SLASMYSAMLL 111 (161)
Q Consensus 96 FHfvf--~LaSlYv~M~l 111 (161)
|+++| +||+++..|+.
T Consensus 21 FYliFY~~La~lFa~~m~ 38 (286)
T 3kdp_B 21 FYVIFYGCLAGIFIGTIQ 38 (286)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 55554 45555544433
Done!