Query 031332
Match_columns 161
No_of_seqs 117 out of 427
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 20:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54m_ f.23.7.1 (M:) Mitochon 26.7 18 0.0013 19.8 1.9 16 29-44 12-27 (43)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 5.6 1.6E+02 0.012 14.9 1.7 19 29-47 14-33 (37)
3 d1rkla_ f.23.30.1 (A:) Oligosa 5.3 1.1E+02 0.0079 15.4 0.9 21 30-50 10-30 (36)
4 d1vf5c3 f.23.23.1 (C:250-286) 4.6 2E+02 0.014 14.7 1.7 16 31-46 4-19 (37)
5 d2i53a2 a.74.1.1 (A:158-267) C 4.2 3E+02 0.022 16.4 2.8 19 99-117 48-66 (110)
6 d1gv2a2 a.4.1.3 (A:144-190) c- 3.7 1.9E+02 0.014 14.9 1.2 11 148-159 23-33 (47)
7 d1guua_ a.4.1.3 (A:) c-Myb, DN 3.6 1.7E+02 0.012 15.2 0.9 11 148-159 24-34 (50)
8 d1q90a3 f.23.23.1 (A:248-292) 3.5 2.5E+02 0.018 14.8 1.6 16 31-46 3-18 (45)
9 d1uaaa2 c.37.1.19 (A:308-640) 3.4 1.7E+02 0.012 20.0 1.0 6 105-110 289-294 (333)
10 d1pjra2 c.37.1.19 (A:319-651) 3.4 1.5E+02 0.011 20.6 0.7 6 105-110 286-291 (333)
No 1
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.69 E-value=18 Score=19.75 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=12.5
Q ss_pred chhhHHHHHHHHhhhe
Q 031332 29 TGSLTLGLITTVLSVV 44 (161)
Q Consensus 29 ~~~~i~g~~~~~~~v~ 44 (161)
.....||+.++|++++
T Consensus 12 ~~E~aigLt~~f~~~L 27 (43)
T d1v54m_ 12 PKEQAIGLSVTFLSFL 27 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567899999888875
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.55 E-value=1.6e+02 Score=14.90 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHh-hheeee
Q 031332 29 TGSLTLGLITTVL-SVVYSA 47 (161)
Q Consensus 29 ~~~~i~g~~~~~~-~v~ys~ 47 (161)
..+...|+.+.|+ +|++++
T Consensus 14 rtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 3567788765544 466653
No 3
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.31 E-value=1.1e+02 Score=15.39 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHhhheeeeeec
Q 031332 30 GSLTLGLITTVLSVVYSAVRA 50 (161)
Q Consensus 30 ~~~i~g~~~~~~~v~ys~~r~ 50 (161)
..++.|+..+-+.++|-.+.+
T Consensus 10 ~~i~fgi~mmtliviyh~~~s 30 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIYHAVDS 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred EEeehhHHHHHHHHHHhhhcc
Confidence 467789998888999987744
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.55 E-value=2e+02 Score=14.67 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=11.6
Q ss_pred hhHHHHHHHHhhheee
Q 031332 31 SLTLGLITTVLSVVYS 46 (161)
Q Consensus 31 ~~i~g~~~~~~~v~ys 46 (161)
.-+.|++.++++++.+
T Consensus 4 ~Rv~gl~~F~~~v~la 19 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLA 19 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577888888877654
No 5
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.17 E-value=3e+02 Score=16.42 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 031332 99 IFSLASMYSAMLLTGWSTS 117 (161)
Q Consensus 99 vf~LaSlYv~M~lTnW~~~ 117 (161)
+.++|++|+|..+.|...+
T Consensus 48 ~IA~a~I~lA~~~~~~~ip 66 (110)
T d2i53a2 48 IIAVAVMYLAGRLCKFEIQ 66 (110)
T ss_dssp HHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 6799999999999988765
No 6
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.66 E-value=1.9e+02 Score=14.93 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=5.0
Q ss_pred HHhhhcccCCCC
Q 031332 148 WSLVAPILFPDR 159 (161)
Q Consensus 148 WtLvAP~i~pdR 159 (161)
|+.||-. +|+|
T Consensus 23 W~~Ia~~-~~gR 33 (47)
T d1gv2a2 23 WAEIAKL-LPGR 33 (47)
T ss_dssp HHHHHTT-CTTC
T ss_pred HHHHHhH-cCCC
Confidence 4455542 3444
No 7
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.57 E-value=1.7e+02 Score=15.20 Aligned_cols=11 Identities=45% Similarity=1.165 Sum_probs=5.8
Q ss_pred HHhhhcccCCCC
Q 031332 148 WSLVAPILFPDR 159 (161)
Q Consensus 148 WtLvAP~i~pdR 159 (161)
|..||-.+ |+|
T Consensus 24 W~~Ia~~~-~~R 34 (50)
T d1guua_ 24 WKVIANYL-PNR 34 (50)
T ss_dssp HHHHHHTS-TTC
T ss_pred HHHHHHHH-CCC
Confidence 55555533 554
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.55 E-value=2.5e+02 Score=14.84 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=11.2
Q ss_pred hhHHHHHHHHhhheee
Q 031332 31 SLTLGLITTVLSVVYS 46 (161)
Q Consensus 31 ~~i~g~~~~~~~v~ys 46 (161)
.-+.|+++++++|+.+
T Consensus 3 ~Rv~gll~F~~~v~la 18 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLT 18 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467888888777654
No 9
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=3.43 E-value=1.7e+02 Score=20.01 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=5.3
Q ss_pred HHHHHH
Q 031332 105 MYSAML 110 (161)
Q Consensus 105 lYv~M~ 110 (161)
+|||||
T Consensus 289 ~YVA~T 294 (333)
T d1uaaa2 289 AYVGIT 294 (333)
T ss_dssp HHHHHH
T ss_pred hHhhHH
Confidence 899987
No 10
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=3.35 E-value=1.5e+02 Score=20.58 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=5.0
Q ss_pred HHHHHH
Q 031332 105 MYSAML 110 (161)
Q Consensus 105 lYv~M~ 110 (161)
+|||||
T Consensus 286 lYVA~T 291 (333)
T d1pjra2 286 AYVGIT 291 (333)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 699987
Done!