BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031333
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZPY1|PPOX2_ARATH Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 OS=Arabidopsis
thaliana GN=PPOX2 PE=1 SV=2
Length = 198
Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 121/154 (78%), Gaps = 1/154 (0%)
Query: 7 VFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
VFRGF++N+D+IQIN+D RSRKIEELK CPFSE+CWYF+++W+QFRINGR++VID SN D
Sbjct: 45 VFRGFEENSDRIQINTDLRSRKIEELKHCPFSEMCWYFSDTWEQFRINGRIEVIDASNPD 104
Query: 67 PEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQ-PKEFSLDPCAGPVDAFCVLILDPD 125
KLQ REK+WF S+++RL Y+ P G P +EQ ++ LDP +GPV +C+L+L+P+
Sbjct: 105 QTKLQQREKAWFANSLRSRLIYVCPTPGSPCNSEQSSQQVKLDPSSGPVPEYCLLLLEPE 164
Query: 126 QVDYLNLKSNQKLKFMSRLSDNGEKYWASLKTSP 159
+VDYLNLK+NQ+L F S + GEK W S K +P
Sbjct: 165 KVDYLNLKTNQRLFFSSMATGTGEKCWTSEKVNP 198
>sp|P53210|YG1B_YEAST Uncharacterized protein YGR017W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGR017W PE=1 SV=1
Length = 297
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 17/71 (23%)
Query: 7 VFRGF---QDNTDKIQINSDTRSRKIEEL------------KSC--PFSEICWYFTESWD 49
VFR F T+ + N+D RS KI E K C PF E C+YF E+W+
Sbjct: 44 VFRDFLFHDKRTNVLTFNTDMRSSKITESFITPNSNNSSDSKRCETPFFEACFYFPETWE 103
Query: 50 QFRINGRVDVI 60
Q+R +G+ I
Sbjct: 104 QYRFSGQCFTI 114
>sp|Q1DCS1|PDXH_MYXXD Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Myxococcus xanthus
(strain DK 1622) GN=pdxH PE=3 SV=2
Length = 206
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
++ SRK E ++ P++ +C+Y+ +Q R+ GRV+ + + +D
Sbjct: 71 TNHESRKGREARAHPYAALCFYWQPLNEQVRVEGRVERVTDAEAD 115
>sp|P21159|PDXH_MYXXA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Myxococcus xanthus
GN=pdxH PE=1 SV=2
Length = 220
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
++ SRK E ++ P++ +C+Y+ +Q R+ GRV+ + + +D
Sbjct: 85 TNHESRKGREARAHPYAALCFYWQPLNEQVRVEGRVERVTDAEAD 129
>sp|P58224|YIAT_ECO57 Putative outer membrane protein YiaT OS=Escherichia coli O157:H7
GN=yiaT PE=3 SV=1
Length = 246
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 21 NSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFG 79
N D +++++ S + + WY E W + + DV+D SN +L + K G
Sbjct: 92 NDDYAMQQLDKRDSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIG 150
>sp|P37681|YIAT_ECOLI Putative outer membrane protein YiaT OS=Escherichia coli (strain
K12) GN=yiaT PE=3 SV=1
Length = 246
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 21 NSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80
N D +++++ S + + WY E W + + DV+D SN +L + K G
Sbjct: 92 NDDYAMQQLDKRDSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIG- 150
Query: 81 SMKARLQYLDPEQGCPSVNEQPKEF 105
RL L P G +E ++
Sbjct: 151 ----RLS-LTPALGVLYYDENFSDY 170
>sp|Q5ZY37|PDXH_LEGPH Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=pdxH PE=3 SV=1
Length = 215
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 81
++ +S K +++ P++ + +Y+ + Q R+ GRV I SD KS F
Sbjct: 80 TNYQSAKAMQIQKNPYAALNFYWPQMARQVRVRGRVKKISSEQSDAYFSSRPLKSQFSAI 139
Query: 82 MKARLQ-YLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF 140
+ + Q LD ++N+ +E+ P P + +I+ PD++++ + N
Sbjct: 140 VSPQSQEILDRISLEDALNQLIEEYGQKPVVRPENWGGYMII-PDEIEFWQGRDN----- 193
Query: 141 MSRLSDNGEKY-----WASLKTSP 159
RL D Y W + +P
Sbjct: 194 --RLHDRIHYYRHGHEWTHRRLAP 215
>sp|A5IH19|PDXH_LEGPC Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila (strain Corby) GN=pdxH PE=3 SV=1
Length = 215
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 81
++ +S K +++ P++ + +Y+ + Q R+ GRV I SD KS F
Sbjct: 80 TNYQSAKAMQIQKNPYAALNFYWPQMARQVRVRGRVKKISSEQSDAYFSSRPLKSQFSAI 139
Query: 82 MKARLQ-YLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF 140
+ + Q LD ++N+ +E+ P P + +I+ PD++++ + N
Sbjct: 140 VSPQSQEILDRISLEDALNQLIEEYGQKPVVRPENWGGYMII-PDEIEFWQGRDN----- 193
Query: 141 MSRLSDNGEKY-----WASLKTSP 159
RL D Y W + +P
Sbjct: 194 --RLHDRIHYYRHGHEWTHRRLAP 215
>sp|Q5X7K4|PDXH_LEGPA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila (strain Paris) GN=pdxH PE=3 SV=1
Length = 215
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 81
++ +S K +++ P++ + +Y+ + Q R+ GRV I SD KS F
Sbjct: 80 TNYQSAKAMQIQKNPYAALNFYWPQMARQVRVRGRVKKISSEQSDAYFSSRPLKSQFSAI 139
Query: 82 MKARLQ-YLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF 140
+ + Q LD ++N+ +E+ P P + +I+ PD++++ + N
Sbjct: 140 VSPQSQEILDRISLEDALNQLIEEYGQKPVVRPENWGGYMII-PDEIEFWQGRDN----- 193
Query: 141 MSRLSDNGEKY-----WASLKTSP 159
RL D Y W + +P
Sbjct: 194 --RLHDRIHYYRHGHEWTHRRLAP 215
>sp|Q5WZ02|PDXH_LEGPL Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Legionella
pneumophila (strain Lens) GN=pdxH PE=3 SV=1
Length = 215
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 81
++ +S K +++ P++ + +Y+ + Q R+ GRV I SD KS F
Sbjct: 80 TNYQSAKAMQIQKNPYAALNFYWPQMARQVRVRGRVKKISSEQSDAYFSSRPIKSQFSAI 139
Query: 82 MKARLQ-YLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKF 140
+ + Q LD ++N+ +E+ P P + +I+ PD++++ + N
Sbjct: 140 VSPQSQEILDRISLEDALNQLIEEYGQKPVVRPENWGGYMII-PDEIEFWQGRDN----- 193
Query: 141 MSRLSDNGEKY-----WASLKTSP 159
RL D Y W + +P
Sbjct: 194 --RLHDRIHYYRHGHEWTHRRLAP 215
>sp|Q47GJ3|HLDD_DECAR ADP-L-glycero-D-manno-heptose-6-epimerase OS=Dechloromonas
aromatica (strain RCB) GN=hldD PE=3 SV=1
Length = 332
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 ESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLD-PEQ 93
+++QFR +G+V + +GS+ P+ Q R+ + G K L +LD PE+
Sbjct: 188 HNFNQFRADGKVKLFEGSHGYPDGDQQRDFVFVGDVAKVNLFFLDHPEK 236
>sp|A9AGI1|PDXH_BURM1 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=pdxH PE=3 SV=1
Length = 214
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 26 SRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
SRK +L + P++ + +Y+ E Q RI GRV+ SD
Sbjct: 81 SRKGRDLAAHPYAALLFYWIELERQVRIEGRVEKTSAEESD 121
>sp|B8HMK7|PDXH_CYAP4 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cyanothece sp.
(strain PCC 7425 / ATCC 29141) GN=pdxH PE=3 SV=1
Length = 213
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
++ +SRK EEL P++ + +++ E Q RI G V + ++SD
Sbjct: 78 TNYKSRKGEELAHDPWAALVFWWAELERQVRIEGSVSQVSAADSD 122
>sp|Q8YXG5|PDXH_NOSS1 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=pdxH PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
++ SRK +EL P + + +++ E Q RI+GRV+ + S SD
Sbjct: 78 TNYNSRKGQELAENPQAALVFWWAELERQVRISGRVEKVSESESD 122
>sp|Q3MFQ5|PDXH_ANAVT Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=pdxH PE=3 SV=1
Length = 214
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 22 SDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
++ SRK +EL P + + +++ E Q RI+GRV+ + S SD
Sbjct: 78 TNYNSRKGQELAENPQAALVFWWAELERQVRISGRVEKVSESESD 122
>sp|P0AAT2|YBDF_ECOLI Uncharacterized protein YbdF OS=Escherichia coli (strain K12)
GN=ybdF PE=4 SV=1
Length = 122
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 35 CPFSEICWYFTESWDQFRINGRVDVIDGS---------NSDPEK 69
PF E+CW F +D F+I G++ ++ SDP+K
Sbjct: 17 LPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK 60
>sp|P0AAT3|YBDF_ECO57 Uncharacterized protein YbdF OS=Escherichia coli O157:H7 GN=ybdF
PE=4 SV=1
Length = 122
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 35 CPFSEICWYFTESWDQFRINGRVDVIDGS---------NSDPEK 69
PF E+CW F +D F+I G++ ++ SDP+K
Sbjct: 17 LPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK 60
>sp|P44619|RHO_HAEIN Transcription termination factor Rho OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rho PE=3
SV=1
Length = 420
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 110 CAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKT 157
AGP D + P Q+ NL++ K++ R GE+Y+A LK
Sbjct: 74 LAGPDDIYV----SPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKV 117
>sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2 SV=1
Length = 5141
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 76 SWFGCSMKARLQYLDPEQGCPSVNEQPKEFS---LDPCAGPVDAFC 118
SW CS+ Y + QG S P EFS L PCAGPV C
Sbjct: 3032 SWTPCSVPCGGGYRNRTQG--SGRHSPVEFSTCSLQPCAGPVPGVC 3075
>sp|Q4FN05|PDXH_PELUB Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pelagibacter ubique
(strain HTCC1062) GN=pdxH PE=3 SV=1
Length = 208
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 14 NTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSD 66
N D ++ S+K ELK+ P + +C+++ Q RING V + +D
Sbjct: 63 NKDGFVFYTNLNSQKGNELKNNPKASMCFHWKSLLRQVRINGMVQKVSNKVAD 115
>sp|A5E8H4|SYL_BRASB Leucine--tRNA ligase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=leuS PE=3 SV=1
Length = 874
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 57 VDVIDGSNSDPEKLQIREKSWFGCSMKARLQY-LDPEQGCPSVNEQPKEFSLDP 109
+D +DG + P+K+++ +++W G S +++ LDP Q P+ + K F+ P
Sbjct: 204 LDALDGLDRWPDKVRLMQRNWIGRSEGLLIRFALDP-QTTPAGETELKIFTTRP 256
>sp|Q8CFH6|SIK2_MOUSE Serine/threonine-protein kinase SIK2 OS=Mus musculus GN=Sik2 PE=1
SV=1
Length = 931
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 20/81 (24%)
Query: 69 KLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVD 128
++QI E S+ G S + L P Q P ++QP FSL PV L+P
Sbjct: 736 QMQIAESSYPGPSQQLAL----PHQETPLTSQQPPSFSLTQALSPV-------LEP---- 780
Query: 129 YLNLKSNQKLKFMSRLSDNGE 149
S+++++F S LS E
Sbjct: 781 -----SSEQMQFSSFLSQYPE 796
>sp|B3QZG9|RL7_PHYMT 50S ribosomal protein L7/L12 OS=Phytoplasma mali (strain AT)
GN=rplL PE=3 SV=1
Length = 127
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 24 TRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMK 83
T+ I+ L+ E+ ++F I+ + GSN D K+Q+ EK+ F +K
Sbjct: 5 TKKNFIDSLREMSLLEVKELVDGLKEEFGIDPNALFVSGSNQDNNKIQVEEKTEFSVIVK 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,994,330
Number of Sequences: 539616
Number of extensions: 2588314
Number of successful extensions: 5177
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5160
Number of HSP's gapped (non-prelim): 29
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)