Query 031333
Match_columns 161
No_of_seqs 110 out of 1038
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i51_A Uncharacterized conserv 100.0 6.9E-39 2.4E-43 246.5 19.9 155 1-159 38-195 (195)
2 2ou5_A Pyridoxamine 5'-phospha 100.0 8.3E-35 2.8E-39 220.3 15.2 133 1-159 42-175 (175)
3 1ci0_A Protein (PNP oxidase); 100.0 1.6E-34 5.4E-39 226.9 11.5 146 1-159 70-228 (228)
4 1dnl_A Pyridoxine 5'-phosphate 100.0 1.3E-33 4.5E-38 217.6 11.9 144 1-159 45-199 (199)
5 1nrg_A Pyridoxine 5'-phosphate 100.0 1.4E-32 4.8E-37 219.4 13.2 149 1-159 92-261 (261)
6 2a2j_A Pyridoxamine 5'-phospha 100.0 2E-32 6.8E-37 216.7 11.3 141 1-160 93-245 (246)
7 1ty9_A Phenazine biosynthesis 100.0 9E-32 3.1E-36 210.6 12.5 144 1-159 70-222 (222)
8 2qea_A Putative general stress 99.8 2.5E-18 8.5E-23 127.5 11.9 110 1-141 27-139 (160)
9 3dmb_A Putative general stress 99.8 8.4E-18 2.9E-22 123.1 12.6 103 1-134 32-135 (147)
10 2re7_A Uncharacterized protein 99.7 1.5E-17 5E-22 119.0 10.5 102 1-132 32-133 (134)
11 2ig6_A NIMC/NIMA family protei 99.7 3.1E-16 1.1E-20 115.1 12.2 102 1-135 43-144 (150)
12 2hhz_A Pyridoxamine 5'-phospha 99.7 1.4E-15 4.8E-20 110.9 13.6 111 1-143 28-140 (150)
13 3u35_A General stress protein; 99.7 4.8E-16 1.6E-20 117.9 11.2 109 1-140 51-162 (182)
14 2i02_A General stress protein 99.7 1.1E-15 3.7E-20 111.0 12.1 102 1-133 36-138 (148)
15 2hq7_A Protein, related to gen 99.6 2.3E-14 7.9E-19 103.3 11.9 103 1-134 32-134 (146)
16 3ec6_A General stress protein 99.6 4.1E-14 1.4E-18 101.8 12.8 100 1-134 28-130 (139)
17 3ba3_A Protein LP_0091, pyrido 99.5 5.9E-14 2E-18 102.8 10.1 105 1-133 27-135 (145)
18 2iab_A Hypothetical protein; N 99.5 4.7E-14 1.6E-18 103.8 8.2 107 1-141 39-147 (155)
19 2fhq_A Putative general stress 99.5 1.6E-12 5.5E-17 93.1 12.7 99 1-132 34-132 (141)
20 3db0_A LIN2891 protein; putati 99.4 3.3E-13 1.1E-17 95.5 7.5 97 1-131 30-127 (128)
21 1vl7_A Hypothetical protein AL 99.3 5.2E-11 1.8E-15 87.3 11.3 104 1-132 44-154 (157)
22 2asf_A Hypothetical protein RV 99.1 3.4E-10 1.2E-14 80.9 9.4 97 1-131 35-131 (137)
23 3f7e_A Pyridoxamine 5'-phospha 99.0 3.9E-09 1.3E-13 74.7 10.2 99 2-130 30-129 (131)
24 1rfe_A Hypothetical protein RV 99.0 3.6E-09 1.2E-13 77.2 9.7 108 2-133 37-147 (162)
25 2aq6_A Pyridoxine 5'-phosphate 98.9 4.7E-08 1.6E-12 69.9 12.8 62 1-63 31-92 (147)
26 2htd_A Predicted flavin-nucleo 98.8 7E-09 2.4E-13 74.8 7.2 50 14-63 64-113 (140)
27 2q9k_A Uncharacterized protein 98.5 4.4E-07 1.5E-11 66.3 8.0 48 14-63 48-95 (151)
28 3tgv_A Heme-binding protein HU 98.3 8.3E-06 2.8E-10 59.1 10.6 93 14-132 38-137 (148)
29 3cp3_A Uncharacterized protein 98.2 5.3E-06 1.8E-10 59.7 8.1 83 15-132 55-139 (148)
30 2arz_A Hypothetical protein PA 98.2 1E-05 3.5E-10 63.0 10.2 92 15-135 47-143 (247)
31 2hti_A BH0577 protein; structu 98.0 4E-05 1.4E-09 57.1 10.2 104 15-134 49-166 (185)
32 1xhn_A CREG, cellular represso 98.0 3.6E-05 1.2E-09 57.5 9.2 91 15-134 64-168 (184)
33 3swj_A CHUZ, putative uncharac 97.9 0.0002 6.8E-09 56.3 12.9 93 14-132 122-223 (251)
34 2fg9_A 5-nitroimidazole antibi 97.8 3.2E-05 1.1E-09 57.4 6.2 91 15-130 63-168 (178)
35 2hq9_A MLL6688 protein; struct 97.8 8E-05 2.7E-09 53.3 8.1 48 15-63 43-93 (149)
36 3dnh_A Uncharacterized protein 97.6 0.00058 2E-08 53.7 10.5 89 15-132 66-159 (258)
37 2fur_A Hypothetical protein; s 97.4 0.00021 7E-09 54.4 5.5 49 15-63 56-117 (209)
38 3u5w_A Putative uncharacterize 97.4 0.00048 1.6E-08 49.6 6.6 49 14-63 45-96 (148)
39 3gas_A Heme oxygenase; FMN-bin 97.3 0.0061 2.1E-07 48.0 13.1 94 14-132 122-223 (259)
40 2vpa_A NIMA-related protein; c 97.1 0.00029 1E-08 54.0 3.7 45 18-63 89-146 (216)
41 3a6r_A FMN-binding protein; el 96.8 0.0023 8E-08 45.0 5.7 50 14-63 40-95 (122)
42 3fkh_A Putative pyridoxamine 5 96.7 0.015 5.3E-07 41.3 9.6 49 14-63 44-94 (138)
43 3in6_A FMN-binding protein; st 95.4 0.046 1.6E-06 39.6 6.7 49 14-62 56-107 (148)
44 3r5l_A Deazaflavin-dependent n 84.7 2 6.7E-05 29.8 5.4 62 4-80 31-97 (122)
45 2ol5_A PAI 2 protein; structur 82.5 6.8 0.00023 29.0 8.0 46 17-63 50-112 (202)
46 3r5y_A Putative uncharacterize 66.3 7.4 0.00025 27.7 4.2 56 3-65 54-114 (147)
47 3h96_A F420-H2 dependent reduc 62.5 9.6 0.00033 27.0 4.2 57 3-65 45-108 (143)
48 3r5z_A Putative uncharacterize 60.2 14 0.00049 26.1 4.8 57 3-65 52-112 (145)
No 1
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}
Probab=100.00 E-value=6.9e-39 Score=246.47 Aligned_cols=155 Identities=34% Similarity=0.591 Sum_probs=136.0
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|+|+|++++.++++|+|+||.+|+|++||++||+|+|||||+...+||||+|+|+++++++.+.||+..+.++|+++
T Consensus 38 P~~R~v~~~~~d~~~~~l~F~T~~~S~K~~~l~~np~v~l~f~~~~~~~qvri~G~a~~v~~~~~~~~~~~~r~~~w~~~ 117 (195)
T 2i51_A 38 PANRTLVFRGFLEDTNQLRFITDTRSAKADQIQQQPWAEICWYFPNTREQFRMAGDLTLISSDDSHQDLQPARIAMWQEL 117 (195)
T ss_dssp EEEEEEECCCBCTTSSCEEEEEETTSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEEECSSSTTGGGHHHHHHHHHHS
T ss_pred eeEEEEEEEEEcCCCCeEEEEEcCCccHHHHHhhCCeEEEEEEeCCCCEEEEEEEEEEEEChHHhhhhhHHHHHHHHHhC
Confidence 67999999999733359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcc-cCCCCCCCCCcEEEEEEeeeEEEeEecC--CCcEEEEEEccCCCCCCCceEEEc
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEF-SLDPCAGPVDAFCVLILDPDQVDYLNLK--SNQKLKFMSRLSDNGEKYWASLKT 157 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~-~~~~~~~~~~~f~v~~l~p~~ve~l~l~--~h~R~~f~~~~~~~~~~~W~~~~l 157 (161)
+..+|..|.++.||+++.+...... ......+.|+||+||+|.|++||||+++ .|+|++|++.. +++|..++|
T Consensus 118 ~~~sr~~~~~~spg~~~~~~~~~~~~~~~~~~p~p~~w~~~~v~P~~iefwq~~~~rh~R~~y~~~~----~~~W~~~rl 193 (195)
T 2i51_A 118 SDAARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEPQNRWLYHRND----QQEWSSEAI 193 (195)
T ss_dssp CHHHHHGGGSCCTTSBCCCCGGGGCCCCCCSSSCCTTEEEEEEEEEEEEEEESSSSSCEEEEEEECT----TSCEEEEEB
T ss_pred ChhhhhhcccCCCCCCccchhHHhhhhccCCCCCCCceEEEEEEccEEEEEecCCCCceEEEEEECC----CCCEEEEEe
Confidence 9999999999999999874432111 0123457899999999999999999997 49999999853 247999999
Q ss_pred cc
Q 031333 158 SP 159 (161)
Q Consensus 158 ~P 159 (161)
+|
T Consensus 194 ~P 195 (195)
T 2i51_A 194 NP 195 (195)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 2
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP}
Probab=100.00 E-value=8.3e-35 Score=220.31 Aligned_cols=133 Identities=19% Similarity=0.322 Sum_probs=120.8
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|+|+|++++.++++|+|+||.+|+|++||++||+|+|||||+...+||||+|+|++++++ .++|+++
T Consensus 42 P~~R~v~~~~~~~~~~~l~F~T~~~s~K~~~l~~nP~v~l~f~~~~~~~qvri~G~a~~~~d~----------~~~w~~~ 111 (175)
T 2ou5_A 42 PDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKASLQVRAKAIAKILPGD----------PNLFAQL 111 (175)
T ss_dssp EEEEECCCCEEETTTTEEEEEEETTSHHHHHHHHCCEEEEEEEEGGGTEEEEEEEEEEEEECC----------HHHHHHS
T ss_pred CceeEEEEEEEEcCCCEEEEEECCCChHHHHHhhCCcEEEEEEeCCCCEEEEEEEEEEEeCcH----------HHHHHHC
Confidence 578999999998556899999999999999999999999999999999999999999999988 5788999
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecC-CCcEEEEEEccCCCCCCCceEEEccc
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK-SNQKLKFMSRLSDNGEKYWASLKTSP 159 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~-~h~R~~f~~~~~~~~~~~W~~~~l~P 159 (161)
++.+|+.|.++.||.|+++ . -.++|+||+||+|.|++||||+++ .|+|++|+++ + |..++|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~-~--------l~~~p~~~~~~~v~p~~vefw~~~~~h~R~~y~~~------~-W~~~~l~P 175 (175)
T 2ou5_A 112 PEAARMNYQGPVPGTPLPA-E--------PDATPNRFTRLICHLSEIDVLHLTTPHQRAVYTAP------D-WRGIWVSP 175 (175)
T ss_dssp CHHHHGGGSSSCTTCBSSC-C--------CCCCSCCEEEEEEEEEEEEEEECCSSCEEEEEETT------T-CCCEEECC
T ss_pred CHhHHhcccCCCCCCcccc-c--------cCCCCCcEEEEEEEeeEEEEEeCCCCceEEEEEcC------C-ceEEEecC
Confidence 9999999977789999865 1 146889999999999999999998 5999999873 3 99999998
No 3
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1
Probab=100.00 E-value=1.6e-34 Score=226.91 Aligned_cols=146 Identities=14% Similarity=0.246 Sum_probs=123.9
Q ss_pred CcceEEEEcceecCCCcEEEEeCCC-ChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhc
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTR-SRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFG 79 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~r-S~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~ 79 (161)
|++|+|+||+++ +++|+||||.+ |+|++||++||+|+|||||+...+||||+|+|+++++++ ..++|++
T Consensus 70 P~~R~V~lk~~d--~~g~~F~Tn~~~S~K~~eL~~NP~val~f~~~~~~rqVrI~G~ae~v~~~~--------~~~yf~~ 139 (228)
T 1ci0_A 70 VSSRILLFKELD--HRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRET--------SERYFKT 139 (228)
T ss_dssp EEEEEEECCEEC--SSSEEEEEECSSSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEECCHHH--------HHHHHHH
T ss_pred eEEEEEEEEEEC--CCEEEEEeCCCCCcchHHHhhCCeEEEEEEeCCCCEEEEEEEEEEEcCchh--------hHHHHHh
Confidence 689999999996 46799999999 999999999999999999999999999999999998754 3677899
Q ss_pred CChhhhhccccCCCCCcCCCCCC--------CcccCCCC-CCCCCcEEEEEEeeeEEEeEecC---CCcEEEEEEccCCC
Q 031333 80 CSMKARLQYLDPEQGCPSVNEQP--------KEFSLDPC-AGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDN 147 (161)
Q Consensus 80 ~~~~~r~~~~~~~pg~~~~~~~~--------~~~~~~~~-~~~~~~f~v~~l~p~~ve~l~l~---~h~R~~f~~~~~~~ 147 (161)
++..+|..+.+++||++|++... .....++. .+.|+|||||+|.|.+||||+++ .|+|++|++...
T Consensus 140 rp~~s~i~awas~qs~~i~~r~~l~~~~~~~~~~f~~~~~~p~p~~w~g~rv~P~~iEfWq~~~~rlHdR~~y~r~~~-- 217 (228)
T 1ci0_A 140 RPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTE-- 217 (228)
T ss_dssp SCHHHHHHHHHCCTTCEESCHHHHHHHHHHHHHHTTSCSSCCCCTTEEEEEEEEEEEEEEECCTTSCCEEEEEECSST--
T ss_pred CCHHHhhceeeCCCCcccCCHHHHHHHHHHHHHhhcCCCCCCCCCcEEEEEEEccEEEEeeCCCCCcEEEEEEEecCC--
Confidence 99999998777799999986322 01112334 67999999999999999999997 399999998520
Q ss_pred CCCCceEEEccc
Q 031333 148 GEKYWASLKTSP 159 (161)
Q Consensus 148 ~~~~W~~~~l~P 159 (161)
+++|..++|+|
T Consensus 218 -~~~W~~~rL~P 228 (228)
T 1ci0_A 218 -NDPWKVVRLAP 228 (228)
T ss_dssp -TSCCEEEEECC
T ss_pred -CCCeEEEEecC
Confidence 24799999998
No 4
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A*
Probab=100.00 E-value=1.3e-33 Score=217.63 Aligned_cols=144 Identities=8% Similarity=0.093 Sum_probs=123.2
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|+|+|++++ +++|+|+|+.+|+|++||++||+|+|||||+...+||||+|+|+++++++ ..++|+++
T Consensus 45 P~~R~v~~~~~d--~~gl~F~T~~~S~K~~~L~~np~v~l~f~~~~~~~qvri~G~a~~v~d~~--------~~~~w~~~ 114 (199)
T 1dnl_A 45 PYQRIVLLKHYD--EKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLE--------VMKYFHSR 114 (199)
T ss_dssp EEEEEEECCEEE--TTEEEEEEETTSHHHHHHHHCCEEEEEECCGGGTEEEEEEEEEEECCHHH--------HHHHHTTS
T ss_pred EEEEEEEEEEEc--CCEEEEEECCCCHHHHHHhhCCeEEEEEEcCCCCEEEEEEEEEEEeCCcc--------HHHHHHhC
Confidence 579999999996 45699999999999999999999999999999999999999999999752 46889999
Q ss_pred ChhhhhccccCCCCCcCCCCCC--------CcccCCCCCCCCCcEEEEEEeeeEEEeEecC---CCcEEEEEEccCCCCC
Q 031333 81 SMKARLQYLDPEQGCPSVNEQP--------KEFSLDPCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGE 149 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~--------~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~---~h~R~~f~~~~~~~~~ 149 (161)
+..++..+..++||.++++... .....++..+.|+||+||+|.|.+||||+++ .|+|++|++..
T Consensus 115 p~~s~~~aw~s~qs~~i~~r~~l~~~~~~~~~~~~~~~~p~p~~~~~~~v~p~~vefw~~~~~rlh~R~~y~~~~----- 189 (199)
T 1dnl_A 115 PRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQREN----- 189 (199)
T ss_dssp CHHHHHHHHHCCTTSCCSCTHHHHHHHHHHHHHSTTSSCCCCTTEEEEEECCSEEEEEECCGGGCCEEEEEEECS-----
T ss_pred ChhhhcccccCCCCcccCCHHHHHHHHHHHHhhccCCCCCCCCceEEEEEECCEEEEEecCCCCCceEEEEEECC-----
Confidence 8888887766799999976432 1112233467899999999999999999997 59999999852
Q ss_pred CCceEEEccc
Q 031333 150 KYWASLKTSP 159 (161)
Q Consensus 150 ~~W~~~~l~P 159 (161)
++|..++|+|
T Consensus 190 ~~W~~~~l~P 199 (199)
T 1dnl_A 190 DAWKIDRLAP 199 (199)
T ss_dssp SSEEEEECCC
T ss_pred CCEEEEEecC
Confidence 4699999998
No 5
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A*
Probab=100.00 E-value=1.4e-32 Score=219.40 Aligned_cols=149 Identities=18% Similarity=0.313 Sum_probs=123.1
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|+|+||+++ +++|+|+||.+|+|++||++||+|+|||||+...+||||+|+|+++++++ ..++|++.
T Consensus 92 P~~R~V~lk~~d--~~gl~F~Tn~~S~K~~eL~~NP~vaL~f~~~~~~rqVrI~G~ae~v~d~e--------~~~~w~sr 161 (261)
T 1nrg_A 92 PSARMLLLKGFG--KDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEE--------AECYFHSR 161 (261)
T ss_dssp EEEEEEECCCEE--TTEEEEEEETTSHHHHHHHHSCEEEEEEEEGGGTEEEEEEEEEEECCHHH--------HHHHHHHS
T ss_pred eeEEEEEEEEEc--CCEEEEEECCCChhHHHHhhCCeEEEEEEeCCCCEEEEEEEEEEEecCcc--------hHHHHhcC
Confidence 679999999997 55699999999999999999999999999999999999999999999873 35778888
Q ss_pred ChhhhhccccCCCCCcCCCCCC--------CcccCCCCCCCCCcEEEEEEeeeEEEeEecC---CCcEEEEEEccC----
Q 031333 81 SMKARLQYLDPEQGCPSVNEQP--------KEFSLDPCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLS---- 145 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~--------~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~---~h~R~~f~~~~~---- 145 (161)
+..++..+....||++|.+... .....++..+.|+|||||+|.|.+||||+++ .|+|++|++...
T Consensus 162 p~~s~i~awas~Qs~~i~~r~~l~~~~~~~~~~f~~~~vp~p~~w~g~rv~P~~vEfwq~~~~rlHdR~~y~r~~~~~~~ 241 (261)
T 1nrg_A 162 PKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDS 241 (261)
T ss_dssp CHHHHHHHHHCCTTSCCSCHHHHHHHHHHHHHHTTTSCCCCCTTEEEEEECCSEEEEEECCTTSCCEEEEEEECSSTTSC
T ss_pred ChhhhhhhhcCCCCCccCCHHHHHHHHHHHHhhcccCCCCCCCcEEEEEEEccEEEEEECCCCCCeEEEEEEECCccccc
Confidence 8888877656689999976322 1111233467899999999999999999997 499999999430
Q ss_pred --C----CCCCCceEEEccc
Q 031333 146 --D----NGEKYWASLKTSP 159 (161)
Q Consensus 146 --~----~~~~~W~~~~l~P 159 (161)
+ .++++|..++|+|
T Consensus 242 ~~~~~~~~~~~~W~~~rL~P 261 (261)
T 1nrg_A 242 PLGPMTHRGEEDWLYERLAP 261 (261)
T ss_dssp CCCTTCEECSTTEEEEECCC
T ss_pred cccccccCCCCCeEEEEccC
Confidence 0 0135799999998
No 6
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1
Probab=99.98 E-value=2e-32 Score=216.71 Aligned_cols=141 Identities=12% Similarity=0.124 Sum_probs=121.0
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|+|+||+++ +++|+|+||.+|+|++||++||+|+|||||+...+||||+|+|++++++++ .++|+++
T Consensus 93 P~~R~Vllk~~d--~~gl~F~Tn~~S~K~~eL~~NP~vaL~f~~~~~~rqVrI~G~ae~v~~~es--------~~yf~sr 162 (246)
T 2a2j_A 93 PVTRSVLCKILD--ESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEI--------FTYWSMR 162 (246)
T ss_dssp EEEEEEEEEEEE--TTEEEEEEETTSHHHHHHHHSCEEEEEEEEGGGTEEEEEEEEEEECCHHHH--------HHHHHHS
T ss_pred eEEEEEEEEEEc--CCEEEEEEcCCChhhHHHhhCCeEEEEEEeCCCCEEEEEEEEEEEeccHhH--------HHHHHhC
Confidence 679999999997 567999999999999999999999999999999999999999999997633 5788999
Q ss_pred ChhhhhccccCCCCCcCCCCCC-C-c------ccCCC-CCCCCCcEEEEEEeeeEEEeEecC---CCcEEEEEEccCCCC
Q 031333 81 SMKARLQYLDPEQGCPSVNEQP-K-E------FSLDP-CAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNG 148 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~-~-~------~~~~~-~~~~~~~f~v~~l~p~~ve~l~l~---~h~R~~f~~~~~~~~ 148 (161)
+..+|..+.+++||++|++... . . ...++ ..+.|+|||||+|.|.+||||+++ .|+|++|++
T Consensus 163 p~~sqi~awas~QS~~i~~r~~L~~~~~~~~~~f~~~~~vp~pp~w~g~rv~P~~iEfWqg~~~rlHdR~~y~r------ 236 (246)
T 2a2j_A 163 PRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN------ 236 (246)
T ss_dssp CHHHHHHHHHSCTTCCCCCSHHHHHHHHHHHHHHTTCSSCCCCTTEEEEEECCSEEEEEECCTTSCCEEEEEET------
T ss_pred CHhhhceEEeCCCCcccCCHHHHHHHHHHHHHhcccCCCCCCCCcEEEEEEEcCEEEEccCCCCCCeEEEEEEC------
Confidence 9999998766789999986432 1 0 11233 468999999999999999999997 499999986
Q ss_pred CCCceEEEcccC
Q 031333 149 EKYWASLKTSPE 160 (161)
Q Consensus 149 ~~~W~~~~l~P~ 160 (161)
+ ..++|+|.
T Consensus 237 -~--~~~rL~P~ 245 (246)
T 2a2j_A 237 -G--RLERLQPG 245 (246)
T ss_dssp -T--EEEECCTT
T ss_pred -C--CcEECCCC
Confidence 1 89999995
No 7
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A*
Probab=99.97 E-value=9e-32 Score=210.58 Aligned_cols=144 Identities=14% Similarity=0.230 Sum_probs=118.6
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|+|+|++++ +++|+|+||.+|+|++||++||+|+|||||+...+||||+|+|++++++ ...++|+..
T Consensus 70 P~~R~v~l~~~d--~~gl~F~T~~~S~K~~eL~~nP~val~f~~~~~~rqvrI~G~ae~v~~~--------~~~~~w~~r 139 (222)
T 1ty9_A 70 PSTRIVVISEIS--DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNA--------KADDAWLKR 139 (222)
T ss_dssp EEEEEEECCEEC--SSEEEEEEETTSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEECCHH--------HHHHHHHTS
T ss_pred EEEEEEEEEEEc--CCEEEEEECCCCcchHHHhhCCeEEEEEEcCCCCeEEEEEEEEEEEccH--------HhHHHHHhC
Confidence 579999999995 5679999999999999999999999999999999999999999999854 335688888
Q ss_pred ChhhhhccccCCCCCcCCCCCC-C----cccC-CCCCCCCCcEEEEEEeeeEEEeEecC---CCcEEEEEEccCCCCCCC
Q 031333 81 SMKARLQYLDPEQGCPSVNEQP-K----EFSL-DPCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKY 151 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~-~----~~~~-~~~~~~~~~f~v~~l~p~~ve~l~l~---~h~R~~f~~~~~~~~~~~ 151 (161)
+..++.......++.++++... . .... +...+.|+|||||+|.|.+||||+++ .|+|++|++.. ++
T Consensus 140 p~~s~i~A~as~qs~~~~~~~~l~~~~~~~~~~~~~~p~p~~w~~~rv~P~~vEfwq~~~~rlHdR~~y~~~~-----~~ 214 (222)
T 1ty9_A 140 PYATHPMSSVSRQSEELQDVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDRSD-----TG 214 (222)
T ss_dssp CGGGHHHHHHCCTTSBCCCHHHHHHHHHHHHTSCSCCCCCTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEET-----TE
T ss_pred ccccccceeeccCCCcCCChHHHHHHHHHHhhccCCCCCCCCEEEEEEEeeEEEEEECCCCCCcEEEEEEECC-----CC
Confidence 8777766545577778764222 0 1101 23457899999999999999999986 49999999853 46
Q ss_pred ceEEEccc
Q 031333 152 WASLKTSP 159 (161)
Q Consensus 152 W~~~~l~P 159 (161)
|..++|+|
T Consensus 215 W~~~rL~P 222 (222)
T 1ty9_A 215 WNVRRLQP 222 (222)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999998
No 8
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP}
Probab=99.77 E-value=2.5e-18 Score=127.48 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=88.6
Q ss_pred CcceEEEEcceecCCCc-EEEEeCCCChhhHHhhhCCc-eEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHh
Q 031333 1 MRVICWVFRGFQDNTDK-IQINSDTRSRKIEELKSCPF-SEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWF 78 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~-l~f~Td~rS~K~~el~~np~-~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~ 78 (161)
|++|.|.+..++ +++. |+|+|+..|+|+.+|++||+ |++||+++...+|++|+|+|+++.+. +...++|.
T Consensus 27 P~~rpv~~~~~~-~~g~~l~f~t~~~s~K~~~l~~np~~v~l~~~~~~~~~~v~v~G~a~~v~d~-------~~~~~~~~ 98 (160)
T 2qea_A 27 GRLIPMSPQTDD-DAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGEGLYADLDGTLERSTDR-------EALDEFWS 98 (160)
T ss_dssp SCCEEECCBCCT-TSCSCEEEEEETTSHHHHHTSSSCEEEEEEEEETTTTEEEEEEEEEEEECCH-------HHHHHSCC
T ss_pred eeEEEeeeeEec-CCCCEEEEEECCCCHHHHHHHhCCceEEEEEECCCCCeEEEEEEEEEEEcCH-------HHHHHHHH
Confidence 689999999774 3455 99999999999999999999 99999999999999999999999886 55666775
Q ss_pred cCChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecC-CCcEEEEE
Q 031333 79 GCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK-SNQKLKFM 141 (161)
Q Consensus 79 ~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~-~h~R~~f~ 141 (161)
. ..+..| |+.+ .+++|+||+|.|.++|||+.+ ++-|..|.
T Consensus 99 ~---~~~~~~----~~~~----------------~~p~~~v~~i~p~~~e~w~~~~~~l~~~~~ 139 (160)
T 2qea_A 99 F---VADAWF----DGGQ----------------HDPDVCLLKFTPASGEISITEGGGARFLYE 139 (160)
T ss_dssp H---HHHHHC----TTCS----------------SCTTEEEEEEEEEEEEEEEECCSSHHHHHH
T ss_pred H---HHHHHc----cCCC----------------CCCCEEEEEEECCEEEEEECCCChHHHHHH
Confidence 3 333344 2222 456899999999999999987 45455443
No 9
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}
Probab=99.76 E-value=8.4e-18 Score=123.06 Aligned_cols=103 Identities=13% Similarity=-0.006 Sum_probs=83.3
Q ss_pred CcceEEEEc-ceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhc
Q 031333 1 MRVICWVFR-GFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFG 79 (161)
Q Consensus 1 ~~~RtVvlR-~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~ 79 (161)
|++|.|.+- ..+ +++.|+|+|+..|.|+++|++||+|++||+++...+|++|+|+|+++.+. +...++|..
T Consensus 32 ~~~~pm~~~~~~d-~~g~l~F~T~~~s~K~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~d~-------~~~~~~~~~ 103 (147)
T 3dmb_A 32 GHARPMTAQIEGD-SGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDP-------AVVDRLWNP 103 (147)
T ss_dssp CCCEEEEEECSSS-SCCCEEEEECTTCTTHHHHTTCEEEEEEEECTTSSEEEEEEEEEEECCCH-------HHHHHHCCH
T ss_pred CceEeCccccccC-CCceEEEEecCCcHHHHHHhhCCeEEEEEEcCCCCeEEEEEEEEEEecCH-------HHHHHHhhH
Confidence 456777765 332 24569999999999999999999999999999999999999999999876 567788853
Q ss_pred CChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCC
Q 031333 80 CSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKS 134 (161)
Q Consensus 80 ~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~ 134 (161)
..++.| |+.+ .+++++||+|.|.++|||+.++
T Consensus 104 ---~~~~~~----~~g~----------------~dp~~~vl~v~p~~~e~W~~~~ 135 (147)
T 3dmb_A 104 ---YVAAWY----EGGK----------------DDPKLALLRLDADHAQIWLNGS 135 (147)
T ss_dssp ---HHHHHC----TTGG----------------GCTTCEEEEEEEEEEEEEECCC
T ss_pred ---HHHHHc----cCCC----------------CCCCEEEEEEEcCEEEEEECCC
Confidence 455555 3222 4579999999999999999974
No 10
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus}
Probab=99.74 E-value=1.5e-17 Score=118.96 Aligned_cols=102 Identities=8% Similarity=0.077 Sum_probs=83.1
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|.|.+..+++.++.|+|+|+..|+|+.+|++||+|+++|+++...+|++|.|+|+++.+. +...++|..
T Consensus 32 P~~~pv~~~~~~~~~~~l~f~t~~~s~K~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~d~-------~~~~~~~~~- 103 (134)
T 2re7_A 32 IHAWPMTTSEVNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEKNYVSISGDAELPTDK-------AKLDELWSP- 103 (134)
T ss_dssp EEEEEECCSEEETTTTEEEEEEETTSHHHHHHHHCCEEEEEEECTTSSCEEEEEEEEECCCCH-------HHHHHHCCH-
T ss_pred EEEEecEeeeecCCCceEEEEECCCCHHHHHHhhCCcEEEEEEcCCCCeEEEEEEEEEEECCH-------HHHHHHhhH-
Confidence 578899998665226789999999999999999999999999999999999999999999876 555667753
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEec
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL 132 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l 132 (161)
..+..| |+.+ .++++++|+|.|.+++||+.
T Consensus 104 --~~~~~~----~~~~----------------~~~~~~~~~i~~~~~~~w~~ 133 (134)
T 2re7_A 104 --VYSAFF----ANGK----------------EDANIQLIKVVPHGVECWLS 133 (134)
T ss_dssp --HHHHTS----TTGG----------------GCTTEEEEEEEEEEEEEECC
T ss_pred --HHHHHc----cCCC----------------CCCCEEEEEEEeCEEEEecC
Confidence 333334 2222 34689999999999999986
No 11
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}
Probab=99.69 E-value=3.1e-16 Score=115.15 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=85.8
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|.|.+...+ ++.|+|+|+.+|+|+.+|++||+|++||+++. .+||+|.|+|+++.+. +...++|...
T Consensus 43 P~~rpv~~~~~~--~~~l~f~t~~~s~K~~~l~~np~V~l~~~~~~-~~~v~i~G~a~~v~d~-------e~~~~~~~~~ 112 (150)
T 2ig6_A 43 PRVRPFGAVFEY--EGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK-GQWIRLTGEVANDDRR-------EVKELALEAV 112 (150)
T ss_dssp EEEEEECCCEEE--TTEEEEEEETTSHHHHHHHHCCEEEEEEECTT-SCEEEEEEEEEECCCH-------HHHHHHHHHS
T ss_pred eEEEEeEEEEEc--CCEEEEEeCCCcHHHHHHHHCCCEEEEEEcCC-CeEEEEEEEEEEECCH-------HHHHHHHHhC
Confidence 578899887653 57899999999999999999999999999998 7999999999999987 5667889874
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCCC
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSN 135 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~h 135 (161)
+..++.| . +..++++||+|.|.+++||.+.++
T Consensus 113 -p~~~~~~-~---------------------~~dp~~~l~~v~~~~a~~wd~~~~ 144 (150)
T 2ig6_A 113 -PSLKNMY-S---------------------VDDGIFAVLYFTKGEGTICSFKGE 144 (150)
T ss_dssp -GGGGGTC-C---------------------TTSSCEEEEEEEEEEEEEECSSSC
T ss_pred -hHHHHhh-c---------------------CCCCcEEEEEEECCEEEEEeCCCC
Confidence 5565555 1 133589999999999999998743
No 12
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis}
Probab=99.67 E-value=1.4e-15 Score=110.93 Aligned_cols=111 Identities=11% Similarity=0.079 Sum_probs=86.1
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCC--CeEEEEEEEEEEecCCCCcHHHHHHHHHhHh
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES--WDQFRINGRVDVIDGSNSDPEKLQIREKSWF 78 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~--~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~ 78 (161)
|++|.|.+...+ ++.|+|+|+.+|+|+.+|++||+|+++++++.. .+||+|.|+|++++++ +. .++|+
T Consensus 28 P~~~p~~~~~~~--~~~l~f~t~~~s~k~~~l~~np~V~l~~~~~~~~~~~~v~i~G~a~~v~d~-------~~-~~~~~ 97 (150)
T 2hhz_A 28 PHARHAHITAAN--EEGIFFMTSPETHFYDQLMGDQRVAMTAISEEGYLIQVVRVEGTARPVEND-------YL-KTVFA 97 (150)
T ss_dssp EEEEEEEEEEEE--TTEEEEEECTTSHHHHHHHHCCEEEEEEEECSTTCCEEEEEEEEEEEECHH-------HH-HHHHT
T ss_pred EEEEEEEEEEEc--CCEEEEEecCCCHHHHHHhhCCeEEEEEEcCCcceeEEEEEEEEEEECCcH-------HH-HHHHH
Confidence 578899888664 467999999999999999999999999999875 4999999999999976 22 37786
Q ss_pred cCChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCCCcEEEEEEc
Q 031333 79 GCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSR 143 (161)
Q Consensus 79 ~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~h~R~~f~~~ 143 (161)
.. +..+..| |+ +..++++|++|.|.+++||++.++....|...
T Consensus 98 ~~-p~~~~~~----~~-----------------~~~~~~~v~~i~~~~~~~~d~~~~~~~~~~~~ 140 (150)
T 2hhz_A 98 DN-PYYQHIY----KD-----------------ESSDTMQVFQIYAGHGFYHSLTQGHKYIFSIG 140 (150)
T ss_dssp TC-GGGGGGC----C----------------------CCEEEEEEEEEEEEEEGGGTEEEEEEEC
T ss_pred hC-hhhhhcc----cC-----------------CCCCcEEEEEEEccEEEEEECCCCCcEEEEeC
Confidence 53 4555555 11 13358999999999999999984333377764
No 13
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A*
Probab=99.67 E-value=4.8e-16 Score=117.91 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=85.3
Q ss_pred CcceEEEEc-ceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhc
Q 031333 1 MRVICWVFR-GFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFG 79 (161)
Q Consensus 1 ~~~RtVvlR-~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~ 79 (161)
|++|.|.+- ..+ +++.|+|+|+..|.|+.+|++||+|++||+++...+|++|+|+|+++.+. +...++|..
T Consensus 51 p~~rpm~~~~d~d-~~g~l~F~T~~~s~K~~~l~~np~v~l~~~~~~~~~~V~v~G~a~vv~D~-------e~~~~lw~~ 122 (182)
T 3u35_A 51 GHARPMTAQIEGD-SGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDP-------AMVDRLWNP 122 (182)
T ss_dssp GCCEEEECBCSSS-SCSCEEEEEETTCGGGGGCTTCEEEEEEEECTTSSEEEEEEEEEEECCCH-------HHHHHHCCH
T ss_pred CcEEEEEEEEeec-CCCEEEEEECCCCHHHHHHHHCCcEEEEEECCCCCeEEEEEEEEEEEcCH-------HHHHHHHHH
Confidence 356777665 332 24569999999999999999999999999999999999999999999876 566778853
Q ss_pred CChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCC--CcEEEE
Q 031333 80 CSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKS--NQKLKF 140 (161)
Q Consensus 80 ~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~--h~R~~f 140 (161)
..+..| |+.+ .+++++||+|.|.+++||+..+ =-|+.+
T Consensus 123 ---~~~~~~----p~g~----------------~dP~~~vlrv~p~~~e~Wd~~~~~~~~~~~ 162 (182)
T 3u35_A 123 ---YVAAWY----EGGK----------------TDPNLALLRLDADHAQIWLNESSLLAGIKV 162 (182)
T ss_dssp ---HHHTTC----TTGG----------------GCTTEEEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred ---HHHHhc----cCCC----------------CCCCEEEEEEEeCEEEEEeCCCCceeeeee
Confidence 455555 3222 3469999999999999999973 344444
No 14
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1
Probab=99.66 E-value=1.1e-15 Score=111.01 Aligned_cols=102 Identities=11% Similarity=0.133 Sum_probs=81.1
Q ss_pred CcceEEEE-cceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhc
Q 031333 1 MRVICWVF-RGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFG 79 (161)
Q Consensus 1 ~~~RtVvl-R~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~ 79 (161)
|++|.|.+ ..++ +++.|+|+|+..|+|+++|++||+|+++|+++...+|++|.|+|+++.++ +...++|..
T Consensus 36 P~~~pv~~~~~~~-~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~v~d~-------~~~~~~~~~ 107 (148)
T 2i02_A 36 LHSYPMSKSGDIN-SEATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQRYVSISGTSQLVKDR-------NKMRELWKP 107 (148)
T ss_dssp EEEEEEECBCC----CCEEEEEEETTSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEEECCH-------HHHHHHCCG
T ss_pred EEEEEeEeeEEEc-CCCeEEEEEcCCCHHHHHHHhCCcEEEEEEcCCCCeEEEEEEEEEEEcCH-------HHHHHHHhH
Confidence 56888988 7764 46789999999999999999999999999999999999999999999876 455677764
Q ss_pred CChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecC
Q 031333 80 CSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK 133 (161)
Q Consensus 80 ~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~ 133 (161)
+ .+..| |+.+ ..++|++|+|.|.+++||++.
T Consensus 108 ~---~~~~~----~~~~----------------~~~~~~v~~i~~~~~~~~~~~ 138 (148)
T 2i02_A 108 E---LQTWF----PKGL----------------DEPDIALLKVNINQVNYWDST 138 (148)
T ss_dssp G---GGGTC----TTGG----------------GCTTEEEEEEEEEEEEEEEGG
T ss_pred H---HHHHc----cCCC----------------CCCCEEEEEEEeCEEEEEcCC
Confidence 3 22222 2221 224699999999999999985
No 15
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1
Probab=99.58 E-value=2.3e-14 Score=103.35 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=82.5
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|.+|.|.+...+ +++.|+|+|+..|+|+++|++||+|+++|+++...++|+|.|+++++.+. +...++|..+
T Consensus 32 P~~~pv~~~~~~-~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~v~d~-------~~~~~~~~~~ 103 (146)
T 2hq7_A 32 PNIKAMMRLKHD-GLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKFAGLMLVGTIEILHDR-------ASKEMLWTDG 103 (146)
T ss_dssp EEEEEEEEEEEE-TTTEEEEEEECCHHHHHHHHHCCEEEEEEECSSSSEEEEEEEEEEEECCH-------HHHHHHCCTT
T ss_pred EEEEEEEEEEEc-CCCEEEEEecCCCHHHHHHhhCCeEEEEEECCCCceEEEEEEEEEEEcCH-------HHHHHHHHHH
Confidence 467888887654 45789999999999999999999999999999988999999999999876 4456667543
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCC
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKS 134 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~ 134 (161)
.+..+ |+.+ ..++|++|+|.|.+++||++.+
T Consensus 104 ---~~~~~----~~~~----------------~~~~~~~~~i~p~~~~~w~~~~ 134 (146)
T 2hq7_A 104 ---CEIYY----PLGI----------------DDPDYTALCFTAEWGNYYRHLK 134 (146)
T ss_dssp ---HHHHC----TTGG----------------GCTTEEEEEEEEEEEEEEETTE
T ss_pred ---HHHHC----CCCC----------------CCCCEEEEEEEccEEEEEeCCC
Confidence 22222 2222 2358999999999999999864
No 16
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0
Probab=99.57 E-value=4.1e-14 Score=101.84 Aligned_cols=100 Identities=14% Similarity=0.250 Sum_probs=78.0
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEE-e--ecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhH
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICW-Y--FTESWDQFRINGRVDVIDGSNSDPEKLQIREKSW 77 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f-~--~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W 77 (161)
|++|.|.+.. +++.|+|+|+..|+|+.+|++||+|++++ | .+...++++|.|+|+++.+. +...++|
T Consensus 28 P~~~pv~~~~---~~~~l~f~t~~~s~k~~~l~~np~v~l~v~~~~d~~~~~~v~v~G~a~~~~d~-------~~~~~~~ 97 (139)
T 3ec6_A 28 PHSAFMMFFH---EDFVLYVATDRQSKKITDIENNPNVHVLLGREGKKLDEDYIEVEGLASIEEDS-------TLKNKFW 97 (139)
T ss_dssp EEEEEEECEE---ETTEEEEEEETTCHHHHHHHHCCEEEEEECC---CTTCCEEEEEEEEEEECCH-------HHHHHHC
T ss_pred EEEEEEEEEE---eCCEEEEEECCCCHHHHHHHhCCcEEEEEEecCCCCCccEEEEEEEEEEEcCH-------HHHHHHH
Confidence 5678888874 36889999999999999999999999998 4 35678999999999999876 5667788
Q ss_pred hcCChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCC
Q 031333 78 FGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKS 134 (161)
Q Consensus 78 ~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~ 134 (161)
+. ..+..| +| +..+++++++|.|.++++|...+
T Consensus 98 ~~---~~~~~~----~~-----------------~~~~~~~~i~i~p~~~~~~d~~g 130 (139)
T 3ec6_A 98 NN---SLKRWL----LR-----------------PEDPNYVLIKINPDTIYYIDGAG 130 (139)
T ss_dssp CG---GGGGTC----SS-----------------TTCTTEEEEEEEEEEEEEEC---
T ss_pred HH---HHHHHh----CC-----------------CCCCCEEEEEEEeeEEEEEcCCC
Confidence 63 444443 11 12358999999999999999875
No 17
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}
Probab=99.53 E-value=5.9e-14 Score=102.79 Aligned_cols=105 Identities=9% Similarity=-0.051 Sum_probs=86.5
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCC---CeEEEEE-EEEEEecCCCCcHHHHHHHHHh
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES---WDQFRIN-GRVDVIDGSNSDPEKLQIREKS 76 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~---~~QvRi~-G~~~~~~~~~~~~~~~~~~~~~ 76 (161)
|++|+|.|.++..+++.|+|+|+.+|+|++||.+||+|++|.+.+.. ..|||++ |+|.+.++.. .+....+
T Consensus 27 P~vR~v~f~~~~~~~~~LYF~T~~~k~k~~ql~~Np~V~i~~~~~d~~~~~~~IRi~~G~a~~~~~~~-----~~~k~~~ 101 (145)
T 3ba3_A 27 ADVKIVNFVWYEAQPDTLYFSSVKTSPALKVYDQNPDIAFITIPNDGTAGNPYLRAQHVKLQRSTKTM-----TDLLPQY 101 (145)
T ss_dssp EEEEEEECEECTTSTTEEEEEEETTCTHHHHHTTCCEEEEEEEECTTCTTCCEEEEEEEEEEECSCCH-----HHHHHHH
T ss_pred EEEEEEEEEEEecCCCEEEEEECCCCHHHHHHHhCCCEEEEEECCCCCccceEEEEEeEEEEEcCCch-----HHHHHHH
Confidence 68999999977667899999999999999999999999999998886 6999999 9999976421 1567888
Q ss_pred HhcCChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecC
Q 031333 77 WFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK 133 (161)
Q Consensus 77 W~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~ 133 (161)
|++. |..+..|. + ..++|.|+.|.|.++.+...+
T Consensus 102 ~e~~-P~~k~~y~----~------------------~~~~l~vf~i~~~~a~~~~~~ 135 (145)
T 3ba3_A 102 LETV-PNYQQVWD----A------------------IGSTLVVFELKLTDLFVDAGV 135 (145)
T ss_dssp HHHS-TTHHHHHH----H------------------HGGGEEEEEEECSEEEEECCT
T ss_pred HHhC-hhhhhccc----C------------------CCCcEEEEEEECCEEEEECCC
Confidence 9875 46666661 0 123799999999999998844
No 18
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis}
Probab=99.50 E-value=4.7e-14 Score=103.80 Aligned_cols=107 Identities=7% Similarity=-0.016 Sum_probs=79.8
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|++|.|-+. + +++.|+|+|...|.|+++|++||+|+++++++ ..+|+|+|+|+++++++. ..++|+.+
T Consensus 39 P~~~pv~~~-~--d~~~l~f~t~~~s~K~~~l~~np~Vsl~v~~~--~~~v~v~G~a~~v~d~~~-------~~~~~~~~ 106 (155)
T 2iab_A 39 PYLVPLSYL-W--DGETFLVATPAASPTGRNLSETGRVRLGIGPT--RDLVLVEGTALPLEPAGL-------PDGVGDTF 106 (155)
T ss_dssp EEEEEEECE-E--CSSCEEEEEETTSHHHHHHHHHCEEEEEESST--TCEEEEEEEEEEECGGGC-------CTTHHHHH
T ss_pred ceEEEEEEE-E--ECCEEEEEECCCCHHHHHHhhCCcEEEEEEcC--CCEEEEEEEEEEecCchh-------HHHHHHHH
Confidence 467777776 5 46789999999999999999999999999998 589999999999986521 12333322
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecC--CCcEEEEE
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK--SNQKLKFM 141 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~--~h~R~~f~ 141 (161)
. ..|.. .+ .. ..+.|++|+|.|++|++|+.. .|.|.+|.
T Consensus 107 ~----~k~~~----~~-------------~~-~~~~~~~~ri~p~~v~~w~~~~~l~~r~~~~ 147 (155)
T 2iab_A 107 A----EKTGF----DP-------------RR-LTTSYLYFRISPRRVQAWREANELSGRELMR 147 (155)
T ss_dssp H----HHHSC----CG-------------GG-CSSCEEEEEEEEEEEEEESSGGGSTTCEEEE
T ss_pred H----HHhCC----Cc-------------cc-cCCCEEEEEEEEEEEEEecCCCCcCcceEEE
Confidence 1 11200 01 00 114599999999999999975 59999997
No 19
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1
Probab=99.45 E-value=1.6e-12 Score=93.05 Aligned_cols=99 Identities=16% Similarity=0.291 Sum_probs=77.4
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|.++.|.+...+ +++.|+|+|+..|+|+.+|++||+|+++|+.+. ++++|.|+++++.++ +...++|..+
T Consensus 34 P~~~pv~~~~~~-~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~--~~v~v~G~a~~v~d~-------~~~~~~~~~~ 103 (141)
T 2fhq_A 34 PRPVPMSKIAAE-GISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG--DSVALMGEVEVVTDE-------KLKQELWQDW 103 (141)
T ss_dssp EEEEEEECCEEE-TTTEEEEEEETTSHHHHHHHHCCEEEEEEEETT--EEEEEEEEEEEECCH-------HHHHHSCCGG
T ss_pred EEEEeeEEEEeC-CCCeEEEEeCCCCHHHHHHHhCCcEEEEEEeCC--CEEEEEEEEEEECCH-------HHHHHHHHHH
Confidence 456777776543 347899999999999999999999999999986 699999999999876 4556677653
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEec
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL 132 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l 132 (161)
....| |+.+ ..+++++++|.|.+++||+.
T Consensus 104 ---~~~~~----p~~~----------------~~~~~~~~~i~p~~~~~~~~ 132 (141)
T 2fhq_A 104 ---FIEHF----PGGP----------------TDPGYVLLKFTANHATYWIE 132 (141)
T ss_dssp ---GGGTC----TTCT----------------TCTTEEEEEEEEEEEEEEET
T ss_pred ---HHHHc----CCCC----------------CCCCEEEEEEEcCEEEEeeC
Confidence 22222 2211 23589999999999999997
No 20
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}
Probab=99.42 E-value=3.3e-13 Score=95.49 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=70.8
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEee-cCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhc
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYF-TESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFG 79 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~-~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~ 79 (161)
|++|.|.+.. +++.|+|+|+..|+|+++|++||+|++++.+ +...++++|.|+|+++.+. +...++|+.
T Consensus 30 P~~~pv~~~~---~~~~l~f~t~~~s~k~~~l~~np~v~l~v~~~~~~~~~v~v~G~a~~v~d~-------~~~~~~~~~ 99 (128)
T 3db0_A 30 PHARYMTFLH---DGLTLYTPSGKELPKTEEVRRNPHVCVLIGYDSPGSAFLEINGLASLEEDE-------SIKERIWEN 99 (128)
T ss_dssp EEEEEEECEE---ETTEEEEEC----CTTCCCCCCCEEEEEECCCSTTCCEEEEEEEEEECCCH-------HHHHHHHHH
T ss_pred EEEEEEEEEe---cCCEEEEEECCCCHHHHHHHhCCceEEEEEEcCCCCcEEEEEEEEEEEcCH-------HHHHHHHHH
Confidence 4677777763 3688999999999999999999999999766 7888999999999999876 566778864
Q ss_pred CChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEe
Q 031333 80 CSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLN 131 (161)
Q Consensus 80 ~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~ 131 (161)
+ .+..| || +..+++++|+|.|.+++||.
T Consensus 100 ~---~~~~~----~~-----------------~~~~~~~~~ri~p~~~~~~~ 127 (128)
T 3db0_A 100 I---SKDWF----QG-----------------EDSPSFVVIKIVPEQIRILN 127 (128)
T ss_dssp H---CSSCC----C-----------------------CCEEEEEEEEEEEEC
T ss_pred H---HHHhC----CC-----------------CCCCCEEEEEEEeEEEEEec
Confidence 2 22222 11 12368999999999999985
No 21
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1
Probab=99.26 E-value=5.2e-11 Score=87.33 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=73.1
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCC-------CeEEEEEEEEEEecCCCCcHHHHHHH
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES-------WDQFRINGRVDVIDGSNSDPEKLQIR 73 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~-------~~QvRi~G~~~~~~~~~~~~~~~~~~ 73 (161)
|.++.|.+.-. +++.++|+|...|.|+++|++||+|+++++++.. .++++|.|+|++++++ ++.|+..+
T Consensus 44 P~~~~v~~~~~--~~g~~~f~t~~~s~k~~nl~~np~vsl~v~~~~~~~~~~~~~~~v~i~G~a~~v~~~--~~~~~~~~ 119 (157)
T 1vl7_A 44 PNGSYAPFVID--DAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATLIERE--SQKWNQVV 119 (157)
T ss_dssp EEEEEEEEEEC--TTCCEEEEECTTSHHHHHHHHCCEEEEEEECCGGGCSSGGGCCEEEEEEEEEEECTT--SHHHHHHH
T ss_pred EEEEEEEEEEc--CCCCEEEEEeCccHHHHHHHhCCcEEEEEEcCccccCCcccCceEEEEEEEEEcCCC--cHHHHHHH
Confidence 34555555422 3478999999999999999999999999998752 5789999999999876 22343443
Q ss_pred HHhHhcCChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEec
Q 031333 74 EKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL 132 (161)
Q Consensus 74 ~~~W~~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l 132 (161)
..+....+...+ .| ...++|++++|.|.++.||.+
T Consensus 120 ~~~~~~~p~~~~-~~-----------------------~~~~~~~l~~l~~~~~~~~~G 154 (157)
T 1vl7_A 120 DQFQERFGQIIE-VL-----------------------RGLADFRIFQLTPKEGRFVIG 154 (157)
T ss_dssp HHHHHHHTHHHH-HH-----------------------HHHSCCEEEEEEEEEEEEECS
T ss_pred HHHHHHCchHHH-Hh-----------------------hccCCEEEEEEEEeEEEEEcC
Confidence 433333222111 11 012479999999999999864
No 22
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1
Probab=99.12 E-value=3.4e-10 Score=80.94 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=69.5
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
|.++.|-+. ++.+++.|+|+|+..|.|+.+|++||+|+++++++. .+++|.|+++++.+. +...++|..+
T Consensus 35 P~~~pv~~~-~~~~~~~l~f~t~~~s~k~~~l~~np~V~l~~~~~~--~~v~v~G~a~~~~d~-------~~~~~~~~~~ 104 (137)
T 2asf_A 35 PHVVAVGFT-FDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGA--RWLSLEGRAAVNSDI-------DAVRDAELRY 104 (137)
T ss_dssp EEEEEECCE-EETTTTEEEEEEETTCHHHHHHHHHCEEEEEEEETT--EEEEEEEEEEEECCH-------HHHHHHHHHH
T ss_pred EEEEEEEEE-EECCCCEEEEEeCCCCHHHHHHhhCCeEEEEEECCC--CEEEEEEEEEEecCH-------HHHHHHHHHH
Confidence 456667664 553347899999999999999999999999999864 889999999999865 2223334332
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEe
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLN 131 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~ 131 (161)
- ..| |... ..+.+++|+|.|+++..+.
T Consensus 105 ~----~~~----~~~~----------------~~~~~~viri~~~~v~g~~ 131 (137)
T 2asf_A 105 A----QRY----RTPR----------------PNPRRVVIEVQIERVLGSA 131 (137)
T ss_dssp H----HHS----CCCC----------------CCTTEEEEEEEEEEEEECT
T ss_pred H----Hhc----Cccc----------------CCCCEEEEEEEEEEEEEec
Confidence 1 122 1100 1246899999999997654
No 23
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis}
Probab=98.99 E-value=3.9e-09 Score=74.70 Aligned_cols=99 Identities=11% Similarity=0.143 Sum_probs=69.0
Q ss_pred cceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCC-CeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 2 RVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES-WDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 2 ~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~-~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
.++.|-+. + +++.|+|+|+..|+|+.+|++||+|+++++++.. .++++|.|+++.+.+++.. .....++.+.
T Consensus 30 ~~~pv~~~-~--d~~~l~f~t~~~s~k~~~l~~np~v~l~v~~~~~~~~~v~v~G~a~~v~~~~~~----~~~~~l~~ky 102 (131)
T 3f7e_A 30 QVNAMWFA-W--DGEVLRFTHTTKRQKYRNIKANPAVAMSVIDPDNPYRYLEVRGLVEDIVPDPTG----AFYLKLNDRY 102 (131)
T ss_dssp EEEEECCE-E--CSSCEEEEEETTSHHHHHHHHCCEEEEEEECSSCTTCEEEEEEEEEEEEECTTC----HHHHHHHHHT
T ss_pred EEEEEEEE-E--ECCEEEEEECCCCHHHHHHhhCCcEEEEEEcCCCCeeEEEEEEEEEEeccCccH----HHHHHHHHHh
Confidence 34555442 3 4678999999999999999999999999999874 7899999999888765332 2334444442
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeE
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYL 130 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l 130 (161)
.+.. + +. ....+..++++|.|++|--|
T Consensus 103 ~~~~---~----~~----------------~~~~~~~~v~ri~~~~~~gk 129 (131)
T 3f7e_A 103 DGPL---T----EP----------------PADKADRVIIVVRPTAFSKQ 129 (131)
T ss_dssp TCSC---C----SC----------------CTTGGGEEEEEEEEEEEECC
T ss_pred CCcc---c----CC----------------CCCCCCEEEEEEEeEEEEee
Confidence 1100 0 00 01225789999999998544
No 24
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1
Probab=98.97 E-value=3.6e-09 Score=77.16 Aligned_cols=108 Identities=7% Similarity=0.091 Sum_probs=74.2
Q ss_pred cceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCC---CeEEEEEEEEEEecCCCCcHHHHHHHHHhHh
Q 031333 2 RVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTES---WDQFRINGRVDVIDGSNSDPEKLQIREKSWF 78 (161)
Q Consensus 2 ~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~---~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~ 78 (161)
.++.|.+. + +++.|+|+|+..|+|+.+|++||+|+++|+.+.. .+.|+|.|+|+++.++ +...++|.
T Consensus 37 ~~~pv~~~-~--~~~~l~~~t~~~~~k~~~l~~np~v~l~~~~~~~~~~~~~v~~~G~a~~v~d~-------~~~~~~~~ 106 (162)
T 1rfe_A 37 HLTAMWYA-V--IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTLRGVSFEGVAEIVEEP-------EALHRVGV 106 (162)
T ss_dssp EEEEECCE-E--ETTEEEEEEETTSHHHHHHHHCCEEEEEEEECSSGGGCEEEEEEEEEEEECCH-------HHHHHHHH
T ss_pred EEEEEEEE-E--ECCEEEEEecCccHHHHHHhhCCeEEEEEEcCCCcccccEEEEEEEEEEeCCh-------HHHHHHHH
Confidence 44555553 3 3578999999999999999999999999998765 3679999999999876 34455666
Q ss_pred cCChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecC
Q 031333 79 GCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK 133 (161)
Q Consensus 79 ~~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~ 133 (161)
.+. +. |. ++.. +....+. ....+.+++|+|.|+++.+|...
T Consensus 107 ~l~---~~-~~---~~~~---~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~ 147 (162)
T 1rfe_A 107 SVW---ER-YT---GPYT---DECKPMV----DQMMNKRVGVRIVARRTRSWDHR 147 (162)
T ss_dssp HHH---HH-HT---CCCC---GGGHHHH----HHHTTTEEEEEEEEEEEEEEEGG
T ss_pred HHH---HH-hc---Cccc---chhHHHH----HhccCceEEEEEEEEEEEEeccc
Confidence 532 11 21 1100 0000000 01235899999999999999874
No 25
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A*
Probab=98.88 E-value=4.7e-08 Score=69.93 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=51.6
Q ss_pred CcceEEEEcceecCCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCC
Q 031333 1 MRVICWVFRGFQDNTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGS 63 (161)
Q Consensus 1 ~~~RtVvlR~~~~~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~ 63 (161)
|.++.|-+. ++.+.+.|+|+|+..|+|+.+|++||+|+++|..+....+++|.|+|+++.+.
T Consensus 31 P~~~pv~~~-~~~~~~~l~~~t~~~~~k~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~d~ 92 (147)
T 2aq6_A 31 PQLSNVQYH-FDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPA 92 (147)
T ss_dssp EEEEEEECE-EETTTTEEEEEEETTSHHHHHHHHCCEEEEEEECTTSSCEEEEEEECEECCCC
T ss_pred EEEEEEEEE-EcCCCCEEEEEecCCCHHHHHHhhCCcEEEEEEcCCCcEEEEEEEEEEEcCCC
Confidence 345666664 54222379999999999999999999999999998777899999999999885
No 26
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp}
Probab=98.84 E-value=7e-09 Score=74.78 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=47.6
Q ss_pred CCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCC
Q 031333 14 NTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGS 63 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~ 63 (161)
+++.|+|+|...+.|..+|++||+|+++|+++...+++||.|+|+++.++
T Consensus 64 d~~~l~f~~~~~~~k~~nL~~np~V~l~~~~~~~~~~v~i~G~a~~v~d~ 113 (140)
T 2htd_A 64 DPSHLQYLEKTKGEAYENIKRGSKVALVAADVPSHTAVRVLATAEVHEDD 113 (140)
T ss_dssp ETTEEEEEESSCCHHHHHHHTTCCEEEEEEETTTTEEEEEEEEEEEESSS
T ss_pred CCCEEEEeccCCchHHHHhhcCCeEEEEEEecCCCCEEEEEEEEEEecCh
Confidence 46789999999999999999999999999999999999999999999887
No 27
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}
Probab=98.49 E-value=4.4e-07 Score=66.32 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=44.2
Q ss_pred CCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCC
Q 031333 14 NTDKIQINSDTRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGS 63 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~ 63 (161)
+++.|+|+|+..++|+.+|+.||+|++|++.+.. -++|.|+|.++.+.
T Consensus 48 d~~~l~f~~~~~~~k~~nl~~np~Vsl~v~~~~~--~~~i~G~A~~v~d~ 95 (151)
T 2q9k_A 48 DETTIRFAIEADSLLVKTLADHPVFTLIFFADQS--TYSLTCTDVAAWET 95 (151)
T ss_dssp ETTEEEEEEETTCTHHHHHHHSCCEEEEEEETTE--EEEEEEEEEEEECC
T ss_pred CCCEEEEEECCCcHHHHHHHhCCcEEEEEECCCC--EEEEEEEEEEEeCc
Confidence 3688999999999999999999999999998763 78999999999986
No 28
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=98.29 E-value=8.3e-06 Score=59.07 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=64.3
Q ss_pred CCCcEEEEeCCCChhhHHhhhCCceEEEEeecCC-------CeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcCChhhhh
Q 031333 14 NTDKIQINSDTRSRKIEELKSCPFSEICWYFTES-------WDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARL 86 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~-------~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~~~~~r~ 86 (161)
+++.++|+|...|.|.++|++||+|++++..+.. ..-+.+.|.+.+++++. +.|+..+...-...++.++.
T Consensus 38 ~~~~~~~~~s~~~~~~~nl~~~prvsl~v~~~~~~~~~~~~~~rltl~G~a~~v~~~~--~~~~~~~~~~~~~~~~~a~~ 115 (148)
T 3tgv_A 38 NQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDS--ELWCQVIAQMGERFGEIIDG 115 (148)
T ss_dssp ETTEEEEEEETTSHHHHHHHHSCEEEEEEECCGGGCSCGGGCCEEEEEEEEEEECTTS--HHHHHHHHHHHHHHCTHHHH
T ss_pred ECCEEEEEECCccHHHHHHHhCCCeEEEEecCcccccCcccceEEEEeeeEEEcCCCc--HHHHHHHHHHHhhcchhhhH
Confidence 4678999999999999999999999999987643 24589999999998763 22222222222222221111
Q ss_pred ccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEec
Q 031333 87 QYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL 132 (161)
Q Consensus 87 ~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l 132 (161)
| .....|.+|+|.|.++-|..+
T Consensus 116 -~-----------------------~~~~DF~~~rl~p~~~r~V~G 137 (148)
T 3tgv_A 116 -L-----------------------SQLQDFMLFRLQPEQGLFVKG 137 (148)
T ss_dssp -H-----------------------TTCTTEEEEEEEECSCCEEES
T ss_pred -h-----------------------hccCCEEEEEEEeEEEEEECc
Confidence 1 133569999999999877754
No 29
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=98.22 E-value=5.3e-06 Score=59.75 Aligned_cols=83 Identities=7% Similarity=-0.024 Sum_probs=59.8
Q ss_pred CCcEEEEeCCCChhhHHhhhCCceEEEEeec--CCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcCChhhhhccccCC
Q 031333 15 TDKIQINSDTRSRKIEELKSCPFSEICWYFT--ESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPE 92 (161)
Q Consensus 15 ~~~l~f~Td~rS~K~~el~~np~~~l~f~~~--~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~~~~ 92 (161)
++.|+|+|. .+.|+.+|+.||+|+++.... ....-|.+.|+|+++.+. +...++|+.+. + .|
T Consensus 55 ~~~lyf~ta-~~~K~~~l~~np~V~~~v~~~~~~~~~sV~v~G~a~~v~d~-------~e~~~~l~~~~---~-~~---- 118 (148)
T 3cp3_A 55 QPRVYFRTA-EGTKLFSVNLNSDVLFEVDRFDDAEGWSVVLKGNAYVVRDT-------EEARHADTLGL---K-PW---- 118 (148)
T ss_dssp SCEEEEEEC---CCSSCTTSCSEEEEEEEECC--CEEEEEEEEEEEECCCH-------HHHHHHTTSCC---C-CC----
T ss_pred CCEEEEEcC-CCchHHHHhcCCcEEEEEEECCCCCCeEEEEEEEEEEECCH-------HHHHHHHhccc---c-cc----
Confidence 578999999 999999999999999998763 334579999999999886 44455665421 0 01
Q ss_pred CCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEec
Q 031333 93 QGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL 132 (161)
Q Consensus 93 pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l 132 (161)
. ..+..++|+|.|+++.-...
T Consensus 119 -------------~------~~~~~~viri~~~~~tgk~~ 139 (148)
T 3cp3_A 119 -------------L------PTLKYNFVRIDVREVSGRAF 139 (148)
T ss_dssp -------------C------TTCCCEEEEEEEEEEEEEEE
T ss_pred -------------C------CCCceEEEEEEeEEEEEEEc
Confidence 0 11467999999999976544
No 30
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1
Probab=98.21 E-value=1e-05 Score=62.99 Aligned_cols=92 Identities=9% Similarity=0.087 Sum_probs=64.2
Q ss_pred CCcEEEEeCCCChhhHHhhhCCceEEEEeecCC-----CeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcCChhhhhccc
Q 031333 15 TDKIQINSDTRSRKIEELKSCPFSEICWYFTES-----WDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYL 89 (161)
Q Consensus 15 ~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~-----~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~ 89 (161)
++.++|+|...|.|.++|+.||+|++++..+.. ..-+.|.|++.++.+++ ++. ....+.+ .
T Consensus 47 ~g~~~f~~s~~s~k~~nl~~nprvsl~v~~~~~~~~~~~~~v~l~G~a~~v~d~e----~~~-~~~~~~~-------~-- 112 (247)
T 2arz_A 47 EGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEE----VAA-AAERYYR-------Y-- 112 (247)
T ss_dssp TSCEEEEEETTSHHHHHHHHCCEEEEEEECTTCSSTTSSCEEEEEEEEEECCHHH----HHH-HHHHHHH-------H--
T ss_pred CCCEEEEEeChhHHHHHHHhCCCeEEEEecCCCCChhhCceEEEEEEEEECCcHH----HHH-HHHHHHH-------H--
Confidence 456999999999999999999999999987653 23799999999998531 111 1222221 1
Q ss_pred cCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCCC
Q 031333 90 DPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSN 135 (161)
Q Consensus 90 ~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~h 135 (161)
.|.... + ...++|.+++|.|.++.|+.+-+.
T Consensus 113 --~P~~~~-------~------~~~~~~~l~rl~~~~~~~~~gfG~ 143 (247)
T 2arz_A 113 --FPESAD-------Y------HRVHDFDFWVLQPVQWRFIGGFGA 143 (247)
T ss_dssp --CGGGTT-------C------BTTBBEEEEEEEEEEEEEECTTCC
T ss_pred --CcChhh-------c------ccccCcEEEEEEEEEEEEEcCCCc
Confidence 121110 0 123579999999999999986554
No 31
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1
Probab=98.05 E-value=4e-05 Score=57.13 Aligned_cols=104 Identities=10% Similarity=0.029 Sum_probs=64.1
Q ss_pred CCcEEEEeCCCChhhHHhhhCCceEEEEeec----C-------CC--eEEEEEEEEEEecCCCCcHHHHHHHHHhHhcCC
Q 031333 15 TDKIQINSDTRSRKIEELKSCPFSEICWYFT----E-------SW--DQFRINGRVDVIDGSNSDPEKLQIREKSWFGCS 81 (161)
Q Consensus 15 ~~~l~f~Td~rS~K~~el~~np~~~l~f~~~----~-------~~--~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~~ 81 (161)
++.|+|+|...++|+..|++||+|++++..+ . +. +-|.+.|+|+++.+. +...++|..+.
T Consensus 49 ~~~ly~hta~~~~k~~~l~~np~V~~~v~~~~~~~~~~v~~~~t~~y~sV~v~G~a~~v~d~-------~e~~~~l~~l~ 121 (185)
T 2hti_A 49 NHAIYFHGASEGRKIKMIEANPEVCFTICEDLGTIVSPVPAHTDTAYMSVIIFGTIEPVSAI-------EEGTEAMQQML 121 (185)
T ss_dssp TTEEEEEEESSSHHHHHHHHCCEEEEEEEECC-------------CEEEEEEEEEEEECCCH-------HHHHHHHHHHH
T ss_pred CCEEEEEeCCcCHHHHHhhcCCeEEEEEEeccccccccccccCcceEEEEEEEEEEEEECCH-------HHHHHHHHHHH
Confidence 5789999999999999999999999999988 5 22 449999999999876 33344444321
Q ss_pred hhhhhccccCCC-CCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCC
Q 031333 82 MKARLQYLDPEQ-GCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKS 134 (161)
Q Consensus 82 ~~~r~~~~~~~p-g~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~ 134 (161)
. . |. |.. ..|....... +......+.-++++|.|+++.-..-..
T Consensus 122 ~---~-y~-~~~~~~p~~~~~~~----~~~~~~~~~~~v~rI~i~~itgk~k~~ 166 (185)
T 2hti_A 122 D---K-YV-PGYYHSPLAASHVE----KYRSSLGSRTAIYKISCRERTAKVNEP 166 (185)
T ss_dssp H---H-HC-C---------------------CCCSSEEEEEEEEEEEEEEEECC
T ss_pred H---H-hC-CCCCCcccchhhcc----ccchHHhCCeEEEEEEeEEEEEEeccC
Confidence 1 1 11 000 1111100000 001123467899999999997765543
No 32
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1
Probab=98.00 E-value=3.6e-05 Score=57.49 Aligned_cols=91 Identities=9% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCcEEEEeCCCChhhHHhhhCCceEEEEeec------------CC--CeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcC
Q 031333 15 TDKIQINSDTRSRKIEELKSCPFSEICWYFT------------ES--WDQFRINGRVDVIDGSNSDPEKLQIREKSWFGC 80 (161)
Q Consensus 15 ~~~l~f~Td~rS~K~~el~~np~~~l~f~~~------------~~--~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~ 80 (161)
++.++|++-..+.|.++|++||+|+++...+ .. ..-+.|.|++..+.++ +++.++..+...-
T Consensus 64 ~g~~~f~~s~~~~~~~nl~~nprvSl~v~~~~~~~~~~~~~dp~~~~~~rvtl~G~a~~v~d~----e~~~~~~~~~~~h 139 (184)
T 1xhn_A 64 SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNET----EMDIAKHSLFIRH 139 (184)
T ss_dssp CSCCEEEECTTSHHHHHHHHCCEEEEEEEGGGTTHHHHHTCCTTSTTSCEEEEEEEEEECCGG----GHHHHHHHHHHHC
T ss_pred CCCEEEEEeCccHhHHHHhhCCCEEEEEecCCCccccccCCCCccccCceEEEEEEEEECChH----HHHHHHHHHHHHC
Confidence 5779999999999999999999999999843 34 5679999999999853 1223333333221
Q ss_pred ChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEecCC
Q 031333 81 SMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKS 134 (161)
Q Consensus 81 ~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l~~ 134 (161)
+.++. | ....+|.+++|.|+++-+..+=+
T Consensus 140 -P~~~~-~-----------------------~~~~~~~~~~l~i~~i~~v~gFG 168 (184)
T 1xhn_A 140 -PEMKT-W-----------------------PSSHNWFFAKLNITNIWVLDYFG 168 (184)
T ss_dssp -GGGGG-S-----------------------CGGGCCEEEEEEEEEEEEECSSS
T ss_pred -cChhH-c-----------------------ccCCCEEEEEEEEeEEEEEccCC
Confidence 11211 1 12357999999999997766433
No 33
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=97.94 E-value=0.0002 Score=56.32 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=64.9
Q ss_pred CCCcEEEEeCCCChhhHHhhhCC-ceEEEEeecCC-------CeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcCChhhh
Q 031333 14 NTDKIQINSDTRSRKIEELKSCP-FSEICWYFTES-------WDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKAR 85 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np-~~~l~f~~~~~-------~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~~~~~r 85 (161)
+++.++|++..-+.|.++|+.|| +|++++..+.. ..=+.|.|+|++++++ +.|+..+..+=.+
T Consensus 122 ~~g~~~~~~s~~a~h~~NL~~nP~rvSl~v~e~e~~~~~~~~~~rltl~G~a~~v~~~---~e~~~~~~~~~~k------ 192 (251)
T 3swj_A 122 TQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAASVILRKRLRYRVNASFLERG---ERFDQIYDEFEKQ------ 192 (251)
T ss_dssp ETTEEEEEEETTSHHHHHHHHSTTCEEEEEECCTTTSSCTTCCCEEEEEEEEEECCSS---HHHHHHHHHHHHH------
T ss_pred ECCEEEEEEeCchHHHHHHHhCCCeEEEEEEcCcccccCccccceEEEEEEEEEecCh---hHHHHHHHHHHHH------
Confidence 36779999999999999999999 99999987653 4669999999999885 2333332222222
Q ss_pred hccccCCCCCc-CCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEec
Q 031333 86 LQYLDPEQGCP-SVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL 132 (161)
Q Consensus 86 ~~~~~~~pg~~-~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l 132 (161)
| |+.. ++ .......|.+++|.|.++-|..+
T Consensus 193 --~----p~a~~~~-----------~~~~~~Df~l~rl~p~~~r~v~G 223 (251)
T 3swj_A 193 --T----GGEGGIK-----------TIRKMLDFHLVKLEFKKGRFVKG 223 (251)
T ss_dssp --H----CSTTTHH-----------HHHTCTTEEEEEEEEEEEEEEEE
T ss_pred --C----CCchhhh-----------hcCcccCEEEEEEEeeEEEEECC
Confidence 1 2210 00 00133689999999999877654
No 34
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1
Probab=97.83 E-value=3.2e-05 Score=57.44 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=62.0
Q ss_pred CCcEEEEeCCCChhhHHhhhCCceEEEEeecCCC---------------eEEEEEEEEEEecCCCCcHHHHHHHHHhHhc
Q 031333 15 TDKIQINSDTRSRKIEELKSCPFSEICWYFTESW---------------DQFRINGRVDVIDGSNSDPEKLQIREKSWFG 79 (161)
Q Consensus 15 ~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~---------------~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~ 79 (161)
++.|+|+|...++|+..|++||+|++++..+... +-|.+.|+|+++.+. +...++|..
T Consensus 63 ~~~lyfhta~~~~k~~~l~~np~V~~~v~~~~~~is~~~~~~~~~t~~y~sV~v~G~a~~v~d~-------~e~~~~l~~ 135 (178)
T 2fg9_A 63 NDTLYLHSGPEGGKIEMLQRNNNVCITFSLGHKLVYQHKQVACSYSMRSESAMCRGKVEFIEDM-------EEKRHALDI 135 (178)
T ss_dssp TTEEEEEECSCSHHHHHHHHCCEEEEEEECCCEEEEEC----CEEEEEEEEEEEEEECEEECSH-------HHHHHHHHH
T ss_pred CCEEEEEcCCcchHHHHhhcCCcEEEEEEeCCceeeccCCCCCCCcccEEEEEEEEEEEEECCH-------HHHHHHHHH
Confidence 5689999999999999999999999999877642 346899999999876 334445554
Q ss_pred CChhhhhccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeE
Q 031333 80 CSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYL 130 (161)
Q Consensus 80 ~~~~~r~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l 130 (161)
+ .+ .|. |+ +.+ . .....+..++++|.|+++.--
T Consensus 136 l---~~-~y~---~~-~~~--~--------~~~~~~~~~v~rI~i~~itgK 168 (178)
T 2fg9_A 136 I---MR-HYT---KD-QFS--Y--------SDPAVRNVKVWKVPVDQMTGK 168 (178)
T ss_dssp H---HH-TTC---SS-CCC--C--------CHHHHHTCEEEEEEEEEEEEE
T ss_pred H---HH-HhC---CC-CCC--c--------ChHhhCCeEEEEEEeEEEEEE
Confidence 2 11 121 11 100 0 001124569999999988654
No 35
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1
Probab=97.82 E-value=8e-05 Score=53.32 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCChhhHHhhhCCceEEEEeecCCC---eEEEEEEEEEEecCC
Q 031333 15 TDKIQINSDTRSRKIEELKSCPFSEICWYFTESW---DQFRINGRVDVIDGS 63 (161)
Q Consensus 15 ~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~---~QvRi~G~~~~~~~~ 63 (161)
++.|+|+| ..++|+.+|++||+|++++..+... +-|.+.|++++++++
T Consensus 43 ~~~l~~~t-~~~~k~~~l~~~p~V~~~v~~~~~~~~y~sV~v~G~a~~v~d~ 93 (149)
T 2hq9_A 43 DAHLYAFS-MPGKKIEWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELPDL 93 (149)
T ss_dssp TTEEEEEE-CSSHHHHHHHHCCEEEEEEEEECSTTCEEEEEEEEEEEECCSC
T ss_pred CCEEEEEe-CccHHHHHHhcCCcEEEEEEecCCCCcEEEEEEEEEEEEEcCc
Confidence 57899999 6899999999999999999876432 349999999999886
No 36
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}
Probab=97.59 E-value=0.00058 Score=53.72 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=62.8
Q ss_pred CCcEEEEeCCCChhhHHhhhCCceEEEEeecC-----CCeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcCChhhhhccc
Q 031333 15 TDKIQINSDTRSRKIEELKSCPFSEICWYFTE-----SWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYL 89 (161)
Q Consensus 15 ~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~-----~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~~~~~r~~~~ 89 (161)
++.++|++...+.|.++|+.||+|+++...+. ....+.|.|+++.+.+++ ++. .+..|.
T Consensus 66 ~g~~~~~~s~~~~h~~NL~~dprvSl~V~~~~~~d~~~~~rvtl~G~a~~v~~~e----~~~------------l~~~y~ 129 (258)
T 3dnh_A 66 DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDE----VPL------------AIARYI 129 (258)
T ss_dssp TSCEEEEEETTSHHHHHHHHCCEEEEEECCGGGSCGGGSCEEEEEEEEEECCGGG----HHH------------HHHHHH
T ss_pred CCCEEEEEeCCcHHHHHHhhCCCEEEEEecCCCCChhhCCeEEEEEEEEEcCchH----HHH------------HHHHHH
Confidence 56788888888999999999999999999775 236799999999998762 222 233332
Q ss_pred cCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEec
Q 031333 90 DPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL 132 (161)
Q Consensus 90 ~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l 132 (161)
.-+|... .+ ....+|.+++|.|.++-|..+
T Consensus 130 ~rhP~a~-------~~------~~~~df~l~rl~~~~v~~v~G 159 (258)
T 3dnh_A 130 ARYPKAK-------LY------LSLPDTRLYRLRTEGVQINGG 159 (258)
T ss_dssp HHCTTHH-------HH------TSSTTEEEEEEEEEEEEEEC-
T ss_pred HHCcChH-------Hc------ccCCCeEEEEEEEeEEEEEcc
Confidence 2222221 00 123579999999999987754
No 37
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1
Probab=97.41 E-value=0.00021 Score=54.44 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCChhhHHhhhCCceEEEEeecCC-------------CeEEEEEEEEEEecCC
Q 031333 15 TDKIQINSDTRSRKIEELKSCPFSEICWYFTES-------------WDQFRINGRVDVIDGS 63 (161)
Q Consensus 15 ~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~-------------~~QvRi~G~~~~~~~~ 63 (161)
++.|+|+|...++|+..|++||+|++++..+.. -+-|.+.|+++++.+.
T Consensus 56 ~~~lyfhta~~~~k~~~l~~np~V~~~v~~~~~~v~~~~~~~~t~~y~sV~v~G~a~~v~d~ 117 (209)
T 2fur_A 56 GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGIVLAKEIKNNSINYVSALIFGRPYEIDDT 117 (209)
T ss_dssp TTEEEEEEETTSHHHHHHHTTCCEEEEEEEEEEEEECSBGGGCEEEEEEEEEEECCEECCCH
T ss_pred CCEEEEEeCCcCHHHHHhhcCCeEEEEEEcCCeeecCCCCCCCccEEEEEEEEEEEEEECCH
Confidence 578999999999999999999999999987653 2458999999999876
No 38
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A
Probab=97.36 E-value=0.00048 Score=49.60 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=41.3
Q ss_pred CCCcEEEEeCCCChhhHHhhhCCceEEEEeecCCC---eEEEEEEEEEEecCC
Q 031333 14 NTDKIQINSDTRSRKIEELKSCPFSEICWYFTESW---DQFRINGRVDVIDGS 63 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~~~---~QvRi~G~~~~~~~~ 63 (161)
+++.|+|+| ..+.|+..|+.||+|++++...... +-|.+.|+|+++.++
T Consensus 45 ~~~~ly~~~-~~g~K~~~l~~np~V~~~v~~~~~~~~y~sV~v~G~a~~v~d~ 96 (148)
T 3u5w_A 45 SGGSFYSFT-TDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIARE 96 (148)
T ss_dssp ETTEEEEEE-CCHHHHHHHHHCCEEEEEEEEESSSSSEEEEEEEEEEEECCGG
T ss_pred ECCEEEEEE-CCchhHHHHhcCCcEEEEEEecCCCCcEEEEEEEEEEEEeCCH
Confidence 357899999 5799999999999999999865422 348999999999886
No 39
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=97.31 E-value=0.0061 Score=48.04 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=64.2
Q ss_pred CCCcEEEEeCCCChhhHHhhhCC-ceEEEEeecCC-------CeEEEEEEEEEEecCCCCcHHHHHHHHHhHhcCChhhh
Q 031333 14 NTDKIQINSDTRSRKIEELKSCP-FSEICWYFTES-------WDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKAR 85 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np-~~~l~f~~~~~-------~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~~~~~~~r 85 (161)
+.+.++|++..-|.|.+.|++|| +|+|++..++. ..=+.+.|+|+++.++ +.|+..+..+=.+.
T Consensus 122 ~~g~~~iliS~lA~Ht~NL~~np~rvSllviede~~~~~~~a~~Rlt~~g~A~~v~~~---~~~~~~~~~~~~r~----- 193 (259)
T 3gas_A 122 DGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNTRFIERG---AEFDKAFDSFIEKT----- 193 (259)
T ss_dssp ETTEEEEEEETTSHHHHHHHHSTTSEEEEEECCTTTSSBTTBCCEEEEEEEEEEECSS---HHHHHHHHHHHHHH-----
T ss_pred ECCEEEEEEeCchHHHHHHHhCCCeEEEEEEeCccccCChhhcCeEEEEEEEEECCCc---hHHHHHHHHHHHHc-----
Confidence 35789999999999999999999 99999977653 3568999999999884 23323222222211
Q ss_pred hccccCCCCCcCCCCCCCcccCCCCCCCCCcEEEEEEeeeEEEeEec
Q 031333 86 LQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNL 132 (161)
Q Consensus 86 ~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~f~v~~l~p~~ve~l~l 132 (161)
|...+ ...+ .....|.+++|+|.++-|..+
T Consensus 194 -------p~~~~----~~~~------~~~~DF~l~rl~p~~~r~v~G 223 (259)
T 3gas_A 194 -------GGAGG----IKTI------RAMQDFHLIALDFKEGRFVKG 223 (259)
T ss_dssp -------CSTTT----HHHH------HTCTTEEEEEEEEEEEEEEEE
T ss_pred -------CCchh----hHhc------ccCCCeEEEEEEEeEEEEEcc
Confidence 11000 0000 133589999999999988765
No 40
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A
Probab=97.13 E-value=0.00029 Score=54.01 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=39.9
Q ss_pred EEEEeCCCChhhHHhhhCCceEEEEeecCC-------------CeEEEEEEEEEEecCC
Q 031333 18 IQINSDTRSRKIEELKSCPFSEICWYFTES-------------WDQFRINGRVDVIDGS 63 (161)
Q Consensus 18 l~f~Td~rS~K~~el~~np~~~l~f~~~~~-------------~~QvRi~G~~~~~~~~ 63 (161)
|+|+|...++|+..|++||+|++++..+.. -+-|.|.|+|+++ ++
T Consensus 89 Lyfhta~~~~K~~~l~~np~V~~~v~~~~~~v~~~~~~~~t~~y~sV~v~G~a~~v-d~ 146 (216)
T 2vpa_A 89 LVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVL-AG 146 (216)
T ss_dssp EEEECCCCCSSBSSCSSEEEEEEEEEEEEEEECCSSGGGCEEEEEEEEEEEEEEEC-CH
T ss_pred EEEEecCcCHHHHHhccCCcEEEEEEeCCeeccCccCCCCcccEEEEEEEEEEEEE-CH
Confidence 999999999999999999999999987652 2568999999999 65
No 41
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A*
Probab=96.82 E-value=0.0023 Score=44.98 Aligned_cols=50 Identities=8% Similarity=0.021 Sum_probs=45.3
Q ss_pred CCCcEEEEeCCCChhhHHhhhCCceEEEEeecC------CCeEEEEEEEEEEecCC
Q 031333 14 NTDKIQINSDTRSRKIEELKSCPFSEICWYFTE------SWDQFRINGRVDVIDGS 63 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~~------~~~QvRi~G~~~~~~~~ 63 (161)
|++.|++..+.-..-.++|+.||+++|.++.++ .+.=|+|+|+|+++.+.
T Consensus 40 dD~~ili~~~~~~kT~~Nl~~N~kvai~v~~~e~~g~~g~~~gf~ikGta~~~~~G 95 (122)
T 3a6r_A 40 DGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDG 95 (122)
T ss_dssp TTTEEEEEESSCHHHHHHHHHCCEEEEEEEEEEEECSSSEEEEEEEEEEEEEESSS
T ss_pred cCCEEEEEccccHHHHHHHhhCCeEEEEEEecccccccCCCceEEEEEEEEEEecc
Confidence 567899999999999999999999999999887 55679999999999987
No 42
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}
Probab=96.72 E-value=0.015 Score=41.34 Aligned_cols=49 Identities=6% Similarity=-0.074 Sum_probs=33.1
Q ss_pred CCCcEEEEeCCCChhhHHhhhCCceEEEEeec--CCCeEEEEEEEEEEecCC
Q 031333 14 NTDKIQINSDTRSRKIEELKSCPFSEICWYFT--ESWDQFRINGRVDVIDGS 63 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np~~~l~f~~~--~~~~QvRi~G~~~~~~~~ 63 (161)
+++.|+|+|.. ..|...|+.||+|+++.... ...--|.+.|+++++.+.
T Consensus 44 ~~~~iyfh~a~-g~K~~~i~~~~~V~f~vd~~~~~~~~SV~v~G~a~~v~d~ 94 (138)
T 3fkh_A 44 DKGAIYIRTAE-GNKLFSMNLNHDVLFEADEVKDGKAWSVVVRATAEIVRKL 94 (138)
T ss_dssp ETTEEEEEEEC---------CCSEEEEEEEEEETTEEEEEEEEEEEEECCSH
T ss_pred ECCEEEEEeCC-ChHHHHhhcCCCEEEEEEECCCCCCEEEEEEEEEEEECCH
Confidence 36789999987 66999999999999888753 323358899999999986
No 43
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp}
Probab=95.43 E-value=0.046 Score=39.56 Aligned_cols=49 Identities=14% Similarity=-0.000 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCChhhHHhhhCCceEEEEe---ecCCCeEEEEEEEEEEecC
Q 031333 14 NTDKIQINSDTRSRKIEELKSCPFSEICWY---FTESWDQFRINGRVDVIDG 62 (161)
Q Consensus 14 ~~~~l~f~Td~rS~K~~el~~np~~~l~f~---~~~~~~QvRi~G~~~~~~~ 62 (161)
|++.|.+.-..-..-.+.|++||+|+++|+ .+....++|+.+....+..
T Consensus 56 Dd~tI~iad~f~~kT~~NL~eNP~aav~~~~~~~~~~~KG~Rl~l~~~e~~t 107 (148)
T 3in6_A 56 GDDTIICARFGADKTYANLKETGKGVFMVLLTDNDKSKDGIRVYVELSADLQ 107 (148)
T ss_dssp TTTEEEEEESSCHHHHHHHHHHCEEEEEEEEESSSCEEEEEEEEEEEEEEES
T ss_pred cCCEEEEEeccchhHHHHHHhCCcEEEEEEEcCCCCccceEEEEEEEEEEec
Confidence 467677666666666889999999999999 7887888999877554433
No 44
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=84.73 E-value=2 Score=29.77 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=40.1
Q ss_pred eEEEEcceecCCCcEEEEeC-----CCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCCcHHHHHHHHHhHh
Q 031333 4 ICWVFRGFQDNTDKIQINSD-----TRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWF 78 (161)
Q Consensus 4 RtVvlR~~~~~~~~l~f~Td-----~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~~~~~~~~~~~~W~ 78 (161)
|++.+--+. +.+.+++... .++..+.+|.+||.|+|..- .+ ++.+++.+++++ ++.++|.
T Consensus 31 r~tPv~~~~-~g~~~~vvas~~G~~~~p~W~~Nl~A~P~v~v~~~----~~--~~~~~A~~l~~~--------Er~~~~~ 95 (122)
T 3r5l_A 31 RVNPLYFLR-DGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIK----KE--VLDLTARDATDE--------ERAEYWP 95 (122)
T ss_dssp EEEEEEEEE-ETTEEEEECSCCGGGCSCHHHHHHHHCCEEEEEET----TE--EEEEEEEECCHH--------HHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEecCCCCCCCHHHHhhccCCcEEEEEC----CE--EEEEEEEECCcc--------hHHHHHH
Confidence 445444444 3455555433 25678999999999998752 22 678889988765 4566666
Q ss_pred cC
Q 031333 79 GC 80 (161)
Q Consensus 79 ~~ 80 (161)
.+
T Consensus 96 ~~ 97 (122)
T 3r5l_A 96 QL 97 (122)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 45
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus}
Probab=82.55 E-value=6.8 Score=29.03 Aligned_cols=46 Identities=7% Similarity=0.101 Sum_probs=38.0
Q ss_pred cEEEEeCCCChhhHHhhhCCceEEEEeecC---------------C--CeEEEEEEEEEEecCC
Q 031333 17 KIQINSDTRSRKIEELKSCPFSEICWYFTE---------------S--WDQFRINGRVDVIDGS 63 (161)
Q Consensus 17 ~l~f~Td~rS~K~~el~~np~~~l~f~~~~---------------~--~~QvRi~G~~~~~~~~ 63 (161)
.|+||.-...+|+..|+. +.|.++|.-+. | =+-|.+.|+++++.++
T Consensus 50 ~Ly~H~A~~n~k~~~l~~-~~V~~~~~g~~~yisps~y~~~~~vpT~nY~SV~~~G~~~~v~D~ 112 (202)
T 2ol5_A 50 CLYGHFARSNPQWNDIQH-QTVLAIFHGPHCYISPSWYETNQAVPTWNYVAVHVYGNVELINDQ 112 (202)
T ss_dssp EEEEEEETTSGGGGGCTT-SCEEEEEEEEEEEECGGGSSCSCCCCEEEEEEEEEEEEEEECCCH
T ss_pred EEEEEECCcChHHHhhCC-CCEEEEEEcCCEEechhhcccCCCCCCcceEEEEEEEEEEEECCH
Confidence 799999999999999999 99998875442 1 1458899999999865
No 46
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=66.31 E-value=7.4 Score=27.72 Aligned_cols=56 Identities=9% Similarity=-0.020 Sum_probs=36.9
Q ss_pred ceEEEEcceecCCCcEEE-EeC----CCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCC
Q 031333 3 VICWVFRGFQDNTDKIQI-NSD----TRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNS 65 (161)
Q Consensus 3 ~RtVvlR~~~~~~~~l~f-~Td----~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~ 65 (161)
.|++.|--+. +++.+++ .+. .++.-+.+|.+||.|.|.. . . -++.+++..+++++.
T Consensus 54 ~r~tPl~~~~-~~g~~~vVas~gG~~~~p~W~~Nl~A~p~v~v~~---g-~--~~~~~~Ar~~~~~Er 114 (147)
T 3r5y_A 54 LRKTPVMRVE-HDGRYAVVASQGGAPTHPAWYFNLVADPRAQLRD---K-D--AVLSVVARELAGPER 114 (147)
T ss_dssp EEEEEEECCE-ETTEEEEECCGGGCSSCCHHHHHHHHCCEEEEEE---T-T--EEEEEEEEECCHHHH
T ss_pred EEEEEEEEEE-ECCEEEEEEcCCCCCCCChHHHhhhhCCcEEEEE---C-C--EEEEEEEEECCchHH
Confidence 4566665554 3444444 444 3678899999999999864 1 1 157788888887643
No 47
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=62.52 E-value=9.6 Score=26.99 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=37.6
Q ss_pred ceEEEEcceecCC--CcEEE-EeC----CCChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCC
Q 031333 3 VICWVFRGFQDNT--DKIQI-NSD----TRSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNS 65 (161)
Q Consensus 3 ~RtVvlR~~~~~~--~~l~f-~Td----~rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~ 65 (161)
.|++.|--+..+. +.+++ .+. .++.-+.+|.+||.|.|.. . .+ ++.+++..+++++.
T Consensus 45 ~r~tPl~~~~~g~~~~~~~vvas~gG~~~~p~W~~Nl~A~p~v~v~~---g-~~--~~~~~A~~~~~~Er 108 (143)
T 3h96_A 45 AAVTPMMYLPSDDDPGTIYVFASKAGAASNPAWYYNLTTAGTAQVEV---G-TE--TYAVGVTEVTGEDR 108 (143)
T ss_dssp EEEEEEECEECSSCTTEEEEECCGGGCSSCCHHHHHHHHHSEEEEEE---T-TE--EEEEEEEEECHHHH
T ss_pred EEEEEEEEEEecCcCCcEEEEEcCCCCCCCChHHHhhhhCCcEEEEE---C-CE--EEEEEEEecCchHH
Confidence 4566666664331 44444 444 4789999999999999864 1 12 57788888887643
No 48
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=60.17 E-value=14 Score=26.12 Aligned_cols=57 Identities=11% Similarity=-0.008 Sum_probs=36.4
Q ss_pred ceEEEEcceecCCCcEEEEeCC----CChhhHHhhhCCceEEEEeecCCCeEEEEEEEEEEecCCCC
Q 031333 3 VICWVFRGFQDNTDKIQINSDT----RSRKIEELKSCPFSEICWYFTESWDQFRINGRVDVIDGSNS 65 (161)
Q Consensus 3 ~RtVvlR~~~~~~~~l~f~Td~----rS~K~~el~~np~~~l~f~~~~~~~QvRi~G~~~~~~~~~~ 65 (161)
.|++.|--+..+++.+++.+.- .+.=+.+|.+||.|.|.. . .+ ++.+.+..+++++.
T Consensus 52 ~r~tPl~~~~~~~~~~vVas~gG~~~~p~W~~Nl~A~p~v~v~~---g-~~--~~~~~Ar~~~~~Er 112 (145)
T 3r5z_A 52 LRKTPLMRVEHNGEYAVVASLGGAPKHPVWYHNIKAEPHVELRD---G-TE--VGDYTAREVTGEEK 112 (145)
T ss_dssp EEEEEEECEEETTEEEEECCBTTBSSCCHHHHHHHHCCEEEEEE---T-TE--EEEEEEEECCHHHH
T ss_pred EEEEEEEEEEECCEEEEEEcCCCCCCCChHHHHhhhCCcEEEEE---C-CE--EEEEEEEECCchHH
Confidence 4666666664333334444443 567789999999999864 1 11 56777888887633
Done!