Citrus Sinensis ID: 031334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGLFNFLPTKKPM
Secondary Structure (PSIPRED)
cccccccccccccHHccccccccccccccHHHHHHHHHccccccEEEEEcccEEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEEEEccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccHHHcccccccccccccHHHHHHHHHccccccEEEEEcccEEEEEEccccccccccEEEEHccHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEEEEccccEEEEEHHHHHccccccccc
Coil and Loop (DISEMBL)
mlgvfssaivsppeelvaagsrtpspkttsTALVDRFLQTnssavsvqvGDNVTLaythqnesplrqrsfAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKAlrdrapyppnhvvghlSGYFAFIVYDKSTSTLFVASVGlfnflptkkpm
Flexible Loop (DISEMBL)
mlgvfssaivsppeelvaagsrtpspkTTSTALVDRFLQTNSSAVSVQVGDNVTLAYthqnesplrqrSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVglfnflptkkpm
Low Complexity Region (SEG)
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGLFNFLPTKKPM
Disordered region (IsUnstruct)
*********************************VDRFLQTNSSAVSVQVGDNVTLAYTHQN**PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGLFNFL******
Disordered Region (DISOPRED)
MLGVFSSAIVSP************************FLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGLFNFLPTK***
Disordered Region (DISEMBL)
MLGVFSSAIVSPPEE*************TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGLFNFLPTKKPM
Disordered Region (DISPRO)
ML**FSSAIVSPPEELVA**********TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGLFNFLPTK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGLFNFLPTKKPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
P24805	149	Stem-specific protein TSJ	N/A	no	0.906	0.979	0.436	7e-31

>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1

 Score =  132 bits (333), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 3/149 (2%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
           YPP+ V+  L G FAFI++D   STLF+A
Sbjct: 120 YPPDQVIKELEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
56606534	236	aluminum-induced protein [Codonopsis lan	0.919	0.627	0.844	2e-68
388513727	236	unknown [Lotus japonicus]	0.919	0.627	0.837	3e-68
255552269	236	Stem-specific protein TSJT1, putative [R	0.919	0.627	0.858	1e-67
34541994	236	Al-induced protein [Gossypium hirsutum]	0.919	0.627	0.844	2e-67
224100337	236	predicted protein [Populus trichocarpa]	0.919	0.627	0.858	5e-67
225432548	236	PREDICTED: stem-specific protein TSJT1 [	0.919	0.627	0.851	8e-67
76573367	252	unknown [Solanum tuberosum]	0.919	0.587	0.837	2e-66
257219564	236	Al-induced protein [Jatropha curcas]	0.919	0.627	0.844	2e-66
13958130	236	aluminium induced protein [Avicennia mar	0.919	0.627	0.824	3e-66
238800460	236	aluminum-induced protein [Cucumis hystri	0.919	0.627	0.831	5e-66

>gi|56606534|gb|AAW02789.1| aluminum-induced protein [Codonopsis lanceolata]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 140/148 (94%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPPEELVAAGSRTPSPK T+TALV+RFL++N+SAVS+QVGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPEELVAAGSRTPSPKITATALVNRFLKSNASAVSMQVGDDVHLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP   RSFAVKDEIFCLFEGALDNLGSL+QQYGL+KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPSAPRSFAVKDEIFCLFEGALDNLGSLKQQYGLSKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHL G FAF+V+DKSTSTLFVA+
Sbjct: 121 PNHVVGHLEGNFAFVVFDKSTSTLFVAT 148

Source: Codonopsis lanceolata

Species: Codonopsis lanceolata

Genus: Codonopsis

Family: Campanulaceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513727|gb|AFK44925.1| unknown [Lotus japonicus]

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 141/148 (95%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPKTT+ AL+ RF+++N+SAVSV++G+NV LAY+H+
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKTTAGALLKRFVESNASAVSVEIGENVQLAYSHR 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP + RSFAVKDEIFC+FEGALDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPWQPRSFAVKDEIFCIFEGALDNLGSLRQQYGLAKSANEVLLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
            NHVVGHLSG FAFIV+DKSTSTLFVAS
Sbjct: 121 ANHVVGHLSGSFAFIVFDKSTSTLFVAS 148

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552269|ref|XP_002517179.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223543814|gb|EEF45342.1| Stem-specific protein TSJT1, putative [Ricinus communis]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/148 (85%), Positives = 136/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK TS ALV RFL TN SAVS+Q+GDN  LAYTH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKITSDALVKRFLDTNPSAVSLQIGDNAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           +ES L+ RSFAVKD+IFCLFEGALDNLGSL+QQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  SESLLQPRSFAVKDDIFCLFEGALDNLGSLKQQYGLAKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHLSG FAFIV+D STSTLFVAS
Sbjct: 121 PNHVVGHLSGSFAFIVFDNSTSTLFVAS 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34541994|gb|AAQ74889.1| Al-induced protein [Gossypium hirsutum]

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 135/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAG RTPSPK T+ ALV RFL+TNSS VS+ +GD+V  AY+H 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGCRTPSPKITADALVKRFLETNSSGVSMHIGDHVQFAYSHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
            ESPL+ RSFAVKDEIFCLFEGALDNLGSL+QQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  KESPLQPRSFAVKDEIFCLFEGALDNLGSLKQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHL G FAFIV+DKSTSTLFVAS
Sbjct: 121 PNHVVGHLIGSFAFIVFDKSTSTLFVAS 148

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100337|ref|XP_002311836.1| predicted protein [Populus trichocarpa] gi|118485817|gb|ABK94756.1| unknown [Populus trichocarpa] gi|222851656|gb|EEE89203.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (660), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 127/148 (85%), Positives = 137/148 (92%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK ++ ALV RF+ TNSSAVSV+VGD+  +A+TH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKISADALVKRFVDTNSSAVSVRVGDDSQVAFTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES L  RSFAVKDEI+CLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  NESMLLPRSFAVKDEIYCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHLSG FAFIV+DKSTSTLFVAS
Sbjct: 121 PNHVVGHLSGSFAFIVFDKSTSTLFVAS 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432548|ref|XP_002280658.1| PREDICTED: stem-specific protein TSJT1 [Vitis vinifera] gi|297736991|emb|CBI26192.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (658), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 126/148 (85%), Positives = 136/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPP+ELVAAG RTPSPK T+ AL++RF+Q N SAVSV VGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPDELVAAGCRTPSPKITAEALMNRFIQGNPSAVSVHVGDHVQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESPL  RSFAVKDEIF LFEGALDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPLLPRSFAVKDEIFSLFEGALDNLGSLRQQYGLAKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHLSG FAFIV+DKSTSTLFVAS
Sbjct: 121 PNHVVGHLSGSFAFIVFDKSTSTLFVAS 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573367|gb|ABA46788.1| unknown [Solanum tuberosum]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 137/148 (92%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPPEELVAAGSRTPSPK TS ALV+RF+Q NSSA+S+Q+GD V LAY+H 
Sbjct: 1   MLGVFSSSIVSPPEELVAAGSRTPSPKITSDALVNRFVQRNSSAISMQIGDFVQLAYSHS 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES +  RSFAVKD+IFCLFEG+LDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESAVLPRSFAVKDDIFCLFEGSLDNLGSLRQQYGLAKSANEVMLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHL G FAFIV+DKSTSTLFVA+
Sbjct: 121 PNHVVGHLEGNFAFIVFDKSTSTLFVAT 148

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257219564|gb|ACV50435.1| Al-induced protein [Jatropha curcas]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 135/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPKTT+ ALV RF+ TN SAVS+Q+GDN  LAYTH 
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKTTADALVKRFIDTNPSAVSLQIGDNAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           +ES L  RSFAVKD++FCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  SESLLHPRSFAVKDDVFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
            NHVVGHLSG FAFIV+D STSTLFVAS
Sbjct: 121 ANHVVGHLSGSFAFIVFDNSTSTLFVAS 148

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13958130|gb|AAK50814.1|AF363286_1 aluminium induced protein [Avicennia marina]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 135/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPK  +T LV RFL+ NSSAVSV++GD+  LAYTH 
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKVAATKLVGRFLEANSSAVSVKIGDDAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           N+S LR RSFAVKDEIFCLFEGALDNLGSL+QQYGL KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NQSALRPRSFAVKDEIFCLFEGALDNLGSLKQQYGLGKSANEVLLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           P+HVVGHL G FAFIV+DKSTSTLFVA+
Sbjct: 121 PSHVVGHLQGNFAFIVFDKSTSTLFVAT 148

Source: Avicennia marina

Species: Avicennia marina

Genus: Avicennia

Family: Acanthaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238800460|gb|ACR56069.1| aluminum-induced protein [Cucumis hystrix]

 Score =  255 bits (651), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/148 (83%), Positives = 138/148 (93%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLG+FSS+I+SPP+ELVAAGSRTPSPKTTS  L++RF+QTN SAVS+Q+GD+V LAYTH+
Sbjct: 1   MLGLFSSSIMSPPDELVAAGSRTPSPKTTSATLLNRFVQTNPSAVSLQLGDHVQLAYTHE 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
            ES L  RSFAVKD+IFCLFEG LDNLGSLRQQYGLAKSANEVIL+IEAYKALRDRAPYP
Sbjct: 61  TESALCPRSFAVKDDIFCLFEGVLDNLGSLRQQYGLAKSANEVILMIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           P+HVVGHLSG FAFIV+DKSTSTLFVAS
Sbjct: 121 PSHVVGHLSGSFAFIVFDKSTSTLFVAS 148

Source: Cucumis hystrix

Species: Cucumis hystrix

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2182137	234	AILP1 "AT5G19140" [Arabidopsis	0.919	0.632	0.810	1.9e-60
TAIR|locus:2090116	253	AT3G15450 "AT3G15450" [Arabido	0.906	0.577	0.46	3.9e-28
TAIR|locus:2170822	251	AT5G43830 "AT5G43830" [Arabido	0.919	0.589	0.425	9.4e-27
TAIR|locus:2123994	250	AT4G27450 "AT4G27450" [Arabido	0.913	0.588	0.433	3.2e-26
TAIR|locus:2084598	248	AT3G22850 "AT3G22850" [Arabido	0.875	0.568	0.414	4.2e-24

TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 120/148 (81%), Positives = 133/148 (89%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             MLG+FS AIVSPPEELVAAGSRTPSPKTT + LV+RF++ N SAVSVQVGD V LAY+H 
Sbjct:     1 MLGIFSGAIVSPPEELVAAGSRTPSPKTTGSTLVNRFVEKNPSAVSVQVGDYVQLAYSHH 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             NESPLR RSF  KDEIFCLF+G+LDNLGSL+QQYGLAK+ANEV+LVIEAYK LRDRAPYP
Sbjct:    61 NESPLRPRSFGAKDEIFCLFQGSLDNLGSLKQQYGLAKNANEVLLVIEAYKTLRDRAPYP 120

Query:   121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
              NHVV HLSG FAF+V+DKSTSTLFVAS
Sbjct:   121 ANHVVAHLSGDFAFVVFDKSTSTLFVAS 148

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010044 "response to aluminum ion" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 69/150 (46%), Positives = 92/150 (61%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTP--SPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
             ML +F  A   PPEEL +  S     +PK     L D      ++A S+  GD+  LAY 
Sbjct:     1 MLAIFQKAFAHPPEELNSPASHFSGKTPKLPGETLSDFLSHHQNNAFSMNFGDSAVLAYA 60

Query:    59 HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRA 117
              Q E+ LRQR F   D I+C+F G L+NL +L +QYGL+ K++NE + VIEAY+ LRDR 
Sbjct:    61 RQ-ETSLRQRLFCGLDGIYCMFLGRLNNLCTLNRQYGLSGKNSNEAMFVIEAYRTLRDRG 119

Query:   118 PYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
             PYP + V+  L G FAF+VYD  TS++F A
Sbjct:   120 PYPADQVLRGLEGSFAFVVYDTQTSSVFSA 149

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 63/148 (42%), Positives = 87/148 (58%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             ML VF   + + PE L +  S   +      +L   F   N ++V++  G +  +AY+  
Sbjct:     1 MLAVFEKTVANSPEALQSPHSSESAFALKDGSLATHFASVNPNSVTLNFGSSGFVAYSLD 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             N  P   R FAV D+IFCLF+G ++NL  L+QQYGL K  NE I+VIEAY+ LRDR PYP
Sbjct:    61 NPDPRVPRLFAVVDDIFCLFQGHIENLPFLKQQYGLNKITNEAIIVIEAYRTLRDRGPYP 120

Query:   121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
              + VV    G FAFI++D    T+F A+
Sbjct:   121 VDKVVRDFHGKFAFILFDSVKKTVFAAA 148

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 65/150 (43%), Positives = 85/150 (56%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
             ML +F  A   PPEEL +  S   S  PK     L D  L+   +  S+  G    LAY 
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEKCSKQPKLPEETLNDFLLRYPLNTFSMSFGQAAVLAYV 60

Query:    59 HQNES-PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117
               + S  + QR F   D+I+CLF G+L+NL  L +QYGL K+ NE + VIEAY+ LRDR 
Sbjct:    61 RPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDRG 120

Query:   118 PYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
             PYP + VV  L G F+F+VYD    ++F A
Sbjct:   121 PYPADQVVKDLDGSFSFVVYDSKAGSVFTA 150

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 63/152 (41%), Positives = 90/152 (59%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSS-----AVSVQVGDNVTL 55
             ML +F   +   PE L   G    S      AL DRFL  + S     AV++ +G +  +
Sbjct:     1 MLAIFDKNVAKTPEAL--QGQEGGSV----CALKDRFLPNHFSSVYPGAVTINLGSSGFI 54

Query:    56 AYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRD 115
             A + + ++PL  R FAV D++FC+F+G ++N+  L+QQYGL K+A EV +VIEAY+ LRD
Sbjct:    55 ACSLEKQNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRD 114

Query:   116 RAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
             R PY    VV    G F F++YD ST  +F+A
Sbjct:   115 RGPYSAEQVVRDFQGKFGFMLYDCSTQNVFLA 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       161   0.00074  107 3  11 22  0.37    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.97u 0.11s 15.08t   Elapsed:  00:00:01
  Total cpu time:  14.97u 0.11s 15.08t   Elapsed:  00:00:01
  Start:  Fri May 10 22:11:11 2013   End:  Fri May 10 22:11:12 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam12481	228	pfam12481, DUF3700, Aluminium induced protein	7e-83
cd01910	224	cd01910, Wali7, This domain is present in Wali7, a	8e-82
cd00352	220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	2e-05
cd00712	220	cd00712, AsnB, Glutamine amidotransferases class-I	0.001
pfam13522	130	pfam13522, GATase_6, Glutamine amidotransferase do	0.002
PTZ00077	586	PTZ00077, PTZ00077, asparagine synthetase-like pro	0.002

>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein

 Score =  243 bits (622), Expect = 7e-83
 Identities = 86/158 (54%), Positives = 106/158 (67%), Gaps = 7/158 (4%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSP--KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH 59
           L VF  ++  PPEEL +  SR PS   K     L+  F+  N +AVSV  GD+  LAY+H
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 60  QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPY 119
             +SPL  R FAV D+IFCLF+G L+NL SLRQQYGL+K+ANE +LVIEAY+ LRDR PY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVA-----SVGLF 152
           P + VV  L G FAF++YD  T T+FVA     SV LF
Sbjct: 121 PADQVVKDLEGSFAFVLYDSKTGTVFVALDADGSVPLF 158

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228

>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

 Score =  240 bits (614), Expect = 8e-82
 Identities = 96/156 (61%), Positives = 115/156 (73%), Gaps = 7/156 (4%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQN 61
           L VFS A+  PPEELV+AGSRTP    T+  L+ RFL  N SAV V +G    LAY+H N
Sbjct: 1   LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHN 58

Query: 62  ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPP 121
           +SPL  R FAVKD+IFCLF+G LDNLGSL+QQYGL+K+ANE +LVIEAY+ LRDR PYP 
Sbjct: 59  QSPLHPRLFAVKDDIFCLFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPA 118

Query: 122 NHVVGHLSGYFAFIVYDKSTSTLFVA-----SVGLF 152
           + VV  L G FAF++YDK TST+FVA     SV L+
Sbjct: 119 DQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLY 154

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. Length = 224

>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 6/80 (7%)

Query: 74  DEIFCLFEGALDNLGSLRQQYGLAKSAN------EVILVIEAYKALRDRAPYPPNHVVGH 127
             I  +  G + N   LR++              EVIL +                 +  
Sbjct: 96  GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKR 155

Query: 128 LSGYFAFIVYDKSTSTLFVA 147
           L G FAF ++D     LF A
Sbjct: 156 LDGPFAFALWDGKPDRLFAA 175

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220

>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 80  FEGALDNLGSLRQQYGLA------KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFA 133
           F G + N   LR +           S  EVIL    Y+   +         +  L+G FA
Sbjct: 72  FNGEIYNYRELRAELEALGHRFRTHSDTEVIL--HLYEEWGEDC-------LERLNGMFA 122

Query: 134 FIVYDKSTSTLFVA 147
           F ++DK    LF+A
Sbjct: 123 FALWDKRKRRLFLA 136

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia. Length = 220

>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 15/74 (20%)

Query: 80  FEGALDNLGSLRQQYGL------AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFA 133
             G + N G LR++         ++S +EV+L    Y+   +         +  L G FA
Sbjct: 43  HNGEIYNFGELREELPAKGHAFRSRSDSEVLL--ALYEEWGE-------DALERLRGMFA 93

Query: 134 FIVYDKSTSTLFVA 147
           F ++DK   TLF+A
Sbjct: 94  FAIWDKRRKTLFLA 107

This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes, such as asparagine synthetase and glutamine--fructose-6-phosphate transaminase. Length = 130

>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
           Y P     HL G FA ++YD  T+T F A
Sbjct: 116 YGPKDFWNHLDGMFATVIYDMKTNTFFAA 144

Length = 586

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PF12481	228	DUF3700: Aluminium induced protein ; InterPro: IPR	100.0
cd01910	224	Wali7 This domain is present in Wali7, a protein o	100.0
cd01909	199	betaLS_CarA_N Glutamine amidotransferases class-II	99.87
COG0367	542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	99.82
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	99.8
PRK09431	554	asnB asparagine synthetase B; Provisional	99.8
PF13537	125	GATase_7: Glutamine amidotransferase domain; PDB:	99.8
PTZ00077	586	asparagine synthetase-like protein; Provisional	99.8
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	99.79
TIGR03104	589	trio_amidotrans asparagine synthase family amidotr	99.78
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	99.76
cd00712	220	AsnB Glutamine amidotransferases class-II (GATase)	99.74
cd03766	181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	99.72
cd00714	215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	99.62
PF13522	133	GATase_6: Glutamine amidotransferase domain	99.53
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	99.49
cd00352	220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.47
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	99.47
PRK08525	445	amidophosphoribosyltransferase; Provisional	99.45
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	99.42
cd01907	249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	99.39
KOG0571	543	consensus Asparagine synthase (glutamine-hydrolyzi	99.39
cd00715	252	GPATase_N Glutamine amidotransferases class-II (GN	99.36
PRK09123	479	amidophosphoribosyltransferase; Provisional	99.35
PRK07631	475	amidophosphoribosyltransferase; Provisional	99.34
PRK06388	474	amidophosphoribosyltransferase; Provisional	99.33
PRK08341	442	amidophosphoribosyltransferase; Provisional	99.32
PRK07272	484	amidophosphoribosyltransferase; Provisional	99.3
PRK07349	500	amidophosphoribosyltransferase; Provisional	99.29
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	99.28
PRK07847	510	amidophosphoribosyltransferase; Provisional	99.26
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	99.26
PLN02440	479	amidophosphoribosyltransferase	99.26
PRK06781	471	amidophosphoribosyltransferase; Provisional	99.25
PRK05793	469	amidophosphoribosyltransferase; Provisional	99.15
TIGR01134	442	purF amidophosphoribosyltransferase. Alternate nam	99.13
PRK09246	501	amidophosphoribosyltransferase; Provisional	99.13
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	98.86
KOG0573	520	consensus Asparagine synthase [Amino acid transpor	98.14
COG0034	470	PurF Glutamine phosphoribosylpyrophosphate amidotr	97.82
cd01908	257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	97.79
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	97.28
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	97.03
TIGR03442	251	conserved hypothetical protein TIGR03442. Members	96.87
KOG0572	474	consensus Glutamine phosphoribosylpyrophosphate am	96.44
PF00310	361	GATase_2: Glutamine amidotransferases class-II; In	96.43
PF09147	201	DUF1933: Domain of unknown function (DUF1933); Int	91.4
PF13230	271	GATase_4: Glutamine amidotransferases class-II; PD	88.46

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length

Probab=100.00  E-value=5.9e-66  Score=431.46  Aligned_cols=149  Identities=50%  Similarity=0.856  Sum_probs=145.3

Q ss_pred             cccccccccCCccccccCCCCCCC--CCCChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCCCccccceeeeCCEEEE
Q 031334            2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL   79 (161)
Q Consensus         2 LavF~k~va~~PeeL~sp~s~~~~--~~~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~~l~pr~F~~~d~i~cv   79 (161)
                      ||||+|+||++||||+||++..++  ++|+++||+++|+++||+||||+||++++|||||++|++++||+||++|||||+
T Consensus         1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi   80 (228)
T PF12481_consen    1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI   80 (228)
T ss_pred             CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence            899999999999999999976443  699999999999999999999999999999999999999999999999999999


Q ss_pred             ecceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeec
Q 031334           80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVG  150 (161)
Q Consensus        80 FnGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr  150 (161)
                      |.|.|+|+..|||||||+|++||+++|||||||||||||||+||||++|+|+|||||||+++++||+|||+
T Consensus        81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~  151 (228)
T PF12481_consen   81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDS  151 (228)
T ss_pred             EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996

There are two conserved sequence motifs: YGL and LRDR.

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

Probab=100.00  E-value=1.5e-56  Score=374.27  Aligned_cols=148  Identities=64%  Similarity=1.011  Sum_probs=143.1

Q ss_pred             cccccccccCCccccccCCCCCCCCCCChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCCCccccceeeeCCEEEEec
Q 031334            2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE   81 (161)
Q Consensus         2 LavF~k~va~~PeeL~sp~s~~~~~~~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~~l~pr~F~~~d~i~cvFn   81 (161)
                      ||||+|+||++||||+||++.+  .++++++|+++|+++||++||+++|+++.|||+|++|++++||+|+++++++|+||
T Consensus         1 laif~~~~~~~p~el~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn   78 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRT--PAKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ   78 (224)
T ss_pred             CcccccccCCCChHHcCCCccc--cCCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence            8999999999999999998753  36788899999999999999999999999999999999999999999999999999


Q ss_pred             ceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031334           82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus        82 GeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      |||||+.+||+|||+.++++|+|+||++|++||||||||+++++++|+|||||||||++++++|+||||+
T Consensus        79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~  148 (224)
T cd01910          79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDAD  148 (224)
T ss_pred             eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCC
Confidence            9999999999999998999999999999999999999999999999999999999999999999999986

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type

Probab=99.87  E-value=1.4e-22  Score=166.12  Aligned_cols=73  Identities=19%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             eeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEE
Q 031334           71 AVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        71 ~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      |..++++++|||||||+.+||+++   |.. ++.+|+|||+++|+.   ||    .+++++|+|||||+|||.+ ++|++
T Consensus        47 ~~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~---~G----~~~l~~L~G~FAfai~D~~-~~L~l  118 (199)
T cd01909          47 ARSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR---LG----LHAFRLAEGDFCFFIEDGN-GRLTL  118 (199)
T ss_pred             eeCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH---Hh----HHHHHHcCEEEEEEEEcCC-CEEEE
Confidence            555889999999999999999987   333 889999999999996   78    6699999999999999999 99999


Q ss_pred             Eeecc
Q 031334          147 ASVGL  151 (161)
Q Consensus       147 ARDr~  151 (161)
                      ||||+
T Consensus       119 aRDr~  123 (199)
T cd01909         119 ATDHA  123 (199)
T ss_pred             EECCC
Confidence            99997

Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.82  E-value=2.5e-20  Score=170.71  Aligned_cols=73  Identities=23%  Similarity=0.500  Sum_probs=66.2

Q ss_pred             eeCCEEEEecceecCHHHHHHHhC---CC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEE
Q 031334           72 VKDEIFCLFEGALDNLGSLRQQYG---LA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA  147 (161)
Q Consensus        72 ~~d~i~cvFnGeIyN~~eLr~qyg---ls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~A  147 (161)
                      ..+.++++|||||||+.|||+++.   +. +|++|+|||+++|++   ||    .+|+++|+|||||+|||.++++||+|
T Consensus        65 ~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~---~g----~~~~~~l~G~fAfai~d~~~~~l~la  137 (542)
T COG0367          65 EGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEE---WG----EDCVEHLNGMFAFAIYDETRQKLFLA  137 (542)
T ss_pred             CCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHHH---HH----HHHHHHhccceEEEEEECCCCEEEEE
Confidence            556699999999999999998874   44 899999999999997   66    44999999999999999999999999


Q ss_pred             eecc
Q 031334          148 SVGL  151 (161)
Q Consensus       148 RDr~  151 (161)
                      ||||
T Consensus       138 RD~~  141 (542)
T COG0367         138 RDPF  141 (542)
T ss_pred             ecCC
Confidence            9997

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=99.80  E-value=1e-19  Score=160.96  Aligned_cols=90  Identities=21%  Similarity=0.383  Sum_probs=74.0

Q ss_pred             eEEEEecCCCCCccccceeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCcccccccc
Q 031334           53 VTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHL  128 (161)
Q Consensus        53 ~~lAys~~~~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L  128 (161)
                      +-|+.+.... ..+| .....+.++++|||||||+.+||+++   |.. ++.+|+|+|+++|++   ||    .+++++|
T Consensus        47 ~rl~i~d~~~-~~qP-~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~~---~g----~~~~~~l  117 (467)
T TIGR01536        47 RRLAIIDLSG-GAQP-MSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEE---WG----EECVDRL  117 (467)
T ss_pred             EEeEEeCCCC-CCCe-eECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHHH---HH----HHHHHHc
Confidence            4455554432 2344 44555689999999999999999987   445 789999999999996   77    6799999


Q ss_pred             CcceEEEEEECCCCeEEEEeecc
Q 031334          129 SGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       129 ~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      +|||||||||.++++|++||||+
T Consensus       118 ~G~fa~~i~D~~~~~l~laRD~~  140 (467)
T TIGR01536       118 DGMFAFALWDSKKGELFLARDRF  140 (467)
T ss_pred             CCcEEEEEEECCCCEEEEEECCC
Confidence            99999999999999999999986

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=99.80  E-value=1.9e-19  Score=165.18  Aligned_cols=111  Identities=16%  Similarity=0.320  Sum_probs=82.6

Q ss_pred             HHHHHhcCCCCcEEEEeCCCeEEEEecCC----CCCccccceeeeCCEEEEecceecCHHHHHHHhC--CC-CCCchHHH
Q 031334           33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQN----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--LA-KSANEVIL  105 (161)
Q Consensus        33 l~~~F~~~~~~a~s~~~g~~~~lAys~~~----~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qyg--ls-ks~sE~ev  105 (161)
                      +++.-.-.=|+...+...+.+.|+...-.    ..--+| ++..++.++++|||||||+.+||+++.  +. ++.+|+||
T Consensus        24 m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Ev  102 (554)
T PRK09431         24 MSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQP-LYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEV  102 (554)
T ss_pred             HHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCC-CCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHH
Confidence            44444445566555554444445443211    111222 345678999999999999999999984  33 78999999


Q ss_pred             HHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          106 VIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       106 vieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      |+++|++   ||    .+++++|+|||||||||.++++|++||||+
T Consensus       103 il~ly~~---~G----~~~~~~L~G~FAf~i~D~~~~~l~laRD~~  141 (554)
T PRK09431        103 ILALYQE---KG----PDFLDDLDGMFAFALYDSEKDAYLIARDPI  141 (554)
T ss_pred             HHHHHHH---HH----HHHHHhCCCceEEEEEECCCCEEEEEeCCC
Confidence            9999996   77    569999999999999999999999999985

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A

Probab=99.80  E-value=8.5e-20  Score=136.46  Aligned_cols=77  Identities=26%  Similarity=0.500  Sum_probs=55.4

Q ss_pred             eeeCCEEEEecceecCHHHHHHHhCC---C-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEE
Q 031334           71 AVKDEIFCLFEGALDNLGSLRQQYGL---A-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        71 ~~~d~i~cvFnGeIyN~~eLr~qygl---s-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      ...++++++|||+|||+.+|++++..   . ++.+|+|+++++|+.+++||    .+++++|+|+|||||||+++++||+
T Consensus        19 ~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~G~fa~v~~d~~~~~l~~   94 (125)
T PF13537_consen   19 SEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLDGPFAFVIWDKDKKRLFL   94 (125)
T ss_dssp             ------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--EEEEEEEEETTE--EEE
T ss_pred             ccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEEEEEeCCCcEEEE
Confidence            46788999999999999999999843   2 78899999999999877899    7899999999999999999999999


Q ss_pred             Eeecc
Q 031334          147 ASVGL  151 (161)
Q Consensus       147 ARDr~  151 (161)
                      ||||+
T Consensus        95 ~rD~~   99 (125)
T PF13537_consen   95 ARDRF   99 (125)
T ss_dssp             EE-TT
T ss_pred             EECCC
Confidence            99985

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=99.80  E-value=1.3e-19  Score=167.51  Aligned_cols=77  Identities=25%  Similarity=0.422  Sum_probs=68.5

Q ss_pred             ceeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeE
Q 031334           69 SFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTL  144 (161)
Q Consensus        69 ~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~l  144 (161)
                      +...+++++++|||||||+.+||+++   |+. ++.||+|||+++|++   ||   .++++++|+|||||||||.++++|
T Consensus        68 ~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~---~G---~~~~l~~L~G~FAf~i~D~~~~~l  141 (586)
T PTZ00077         68 LLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKE---YG---PKDFWNHLDGMFATVIYDMKTNTF  141 (586)
T ss_pred             cCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hC---HHHHHHhcCCCEEEEEEECCCCEE
Confidence            44566789999999999999999997   455 889999999999996   77   237999999999999999999999


Q ss_pred             EEEeecc
Q 031334          145 FVASVGL  151 (161)
Q Consensus       145 f~ARDr~  151 (161)
                      ++||||+
T Consensus       142 ~~aRD~~  148 (586)
T PTZ00077        142 FAARDHI  148 (586)
T ss_pred             EEEECCC
Confidence            9999985

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=99.79  E-value=3.4e-19  Score=164.61  Aligned_cols=108  Identities=17%  Similarity=0.281  Sum_probs=80.4

Q ss_pred             HHhcCCCCcEEEEeCCCeEEEEecCC----CCCccccceeeeCCEEEEecceecCHHHHHHHhC-CC-CCCchHHHHHHH
Q 031334           36 RFLQTNSSAVSVQVGDNVTLAYTHQN----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-LA-KSANEVILVIEA  109 (161)
Q Consensus        36 ~F~~~~~~a~s~~~g~~~~lAys~~~----~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qyg-ls-ks~sE~evviea  109 (161)
                      .-.-.=|+...+...+.+.|+...-.    +.-.+| ++..+++++++|||||||+.+||++++ .. ++.+|+|||+++
T Consensus        27 ~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~l  105 (578)
T PLN02549         27 RLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQP-LYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHL  105 (578)
T ss_pred             HhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCC-cCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence            33333465544444333445433211    122233 445567899999999999999999985 33 889999999999


Q ss_pred             HHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          110 YKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       110 Y~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      |++   ||    .+++++|+|||||||||.++++|++||||+
T Consensus       106 y~~---~G----~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~  140 (578)
T PLN02549        106 YEE---HG----EEFVDMLDGMFSFVLLDTRDNSFIAARDHI  140 (578)
T ss_pred             HHH---HH----HHHHHhCCCceEEEEEECCCCEEEEEECCC
Confidence            996   77    569999999999999999999999999985

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase

Probab=99.78  E-value=3.2e-19  Score=163.85  Aligned_cols=75  Identities=24%  Similarity=0.473  Sum_probs=67.9

Q ss_pred             eeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEE
Q 031334           70 FAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLF  145 (161)
Q Consensus        70 F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf  145 (161)
                      ...+++++++|||||||+.|||+++   |+. ++.+|+|||+++|+.   ||    .+++++|+|||||+|||..+++|+
T Consensus        64 ~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~---~G----~~~~~~l~G~fa~~i~d~~~~~l~  136 (589)
T TIGR03104        64 VDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHA---WG----RDCVSRFNGMFAFAIWERDSGRLL  136 (589)
T ss_pred             ECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHH---HH----HHHHHHhhcceEEEEEeCCCCEEE
Confidence            3456679999999999999999987   555 889999999999996   77    679999999999999999999999


Q ss_pred             EEeecc
Q 031334          146 VASVGL  151 (161)
Q Consensus       146 ~ARDr~  151 (161)
                      +||||+
T Consensus       137 laRD~~  142 (589)
T TIGR03104       137 LARDRL  142 (589)
T ss_pred             EEecCC
Confidence            999986

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=99.76  E-value=2.5e-18  Score=157.60  Aligned_cols=75  Identities=24%  Similarity=0.521  Sum_probs=67.7

Q ss_pred             eeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEE
Q 031334           70 FAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLF  145 (161)
Q Consensus        70 F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf  145 (161)
                      ...+++++++|||||||+.|||+++   |.. ++.+|+|+|+++|++   ||    .+|+++|+|||||+|||..+++|+
T Consensus        64 ~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~---~g----~~~~~~l~G~fa~~~~d~~~~~l~  136 (628)
T TIGR03108        64 FNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEE---WG----EACVERFRGMFAFALWDRNQETLF  136 (628)
T ss_pred             CcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHHH---HH----HHHHHHcCCCEEEEEEECCCCEEE
Confidence            3556789999999999999999886   555 789999999999996   77    679999999999999999999999


Q ss_pred             EEeecc
Q 031334          146 VASVGL  151 (161)
Q Consensus       146 ~ARDr~  151 (161)
                      +||||+
T Consensus       137 ~~rD~~  142 (628)
T TIGR03108       137 LARDRL  142 (628)
T ss_pred             EEECCC
Confidence            999994

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

Probab=99.74  E-value=1.6e-17  Score=133.88  Aligned_cols=111  Identities=17%  Similarity=0.371  Sum_probs=80.9

Q ss_pred             HHHHHhcCCCCcEEEEeCCCeEEEEecCCC----CCccccceeeeCCEEEEecceecCHHHHHHHhCC---C-CCCchHH
Q 031334           33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQNE----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---A-KSANEVI  104 (161)
Q Consensus        33 l~~~F~~~~~~a~s~~~g~~~~lAys~~~~----~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qygl---s-ks~sE~e  104 (161)
                      ++..-.-.=|++..+...+...|+.+.-..    .-.+| .....+++++++||+|||+.+|+++++.   . ++.+|+|
T Consensus        22 ~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP-~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e  100 (220)
T cd00712          22 MLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQP-MVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTE  100 (220)
T ss_pred             HHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCC-eEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHH
Confidence            444444444665555554444444432110    12223 2233468999999999999999998843   2 7899999


Q ss_pred             HHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          105 LVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       105 vvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      +|+++|++   ||    .+++++|+|+|||||||.+++++++||||+
T Consensus       101 ~l~~~~~~---~g----~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~  140 (220)
T cd00712         101 VILHLYEE---WG----EDCLERLNGMFAFALWDKRKRRLFLARDRF  140 (220)
T ss_pred             HHHHHHHH---Hh----HHHHHHhhheEEEEEEECCCCEEEEEECCC
Confidence            99999996   77    679999999999999999999999999984

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.

>cd03766 Gn_AT_II_novel Gn_AT_II_novel

Probab=99.72  E-value=1.6e-17  Score=132.84  Aligned_cols=70  Identities=23%  Similarity=0.355  Sum_probs=60.4

Q ss_pred             eCCEEEEecceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCC--CCccccccccCcceEEEEEECCCCeEEEEeec
Q 031334           73 KDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASVG  150 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGP--ypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr  150 (161)
                      .++++++|||||||+.+||+      +.+|+|+|+++|++   +|-  -...+++++|+|+|||||||..++++++||||
T Consensus        71 ~~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~---~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~  141 (181)
T cd03766          71 STGNVLQWNGELYNIDGVED------EENDTEVIFELLAN---CSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDC  141 (181)
T ss_pred             CCCEEEEECCEEECcccccC------CCCHHHHHHHHHHH---HhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECC
Confidence            36899999999999999997      78899999999986   441  01136999999999999999999999999998


Q ss_pred             c
Q 031334          151 L  151 (161)
Q Consensus       151 ~  151 (161)
                      +
T Consensus       142 ~  142 (181)
T cd03766         142 L  142 (181)
T ss_pred             C
Confidence            6

This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type

Probab=99.62  E-value=1.4e-15  Score=123.53  Aligned_cols=76  Identities=18%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECCCC-eEE
Q 031334           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKSTS-TLF  145 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~t~-~lf  145 (161)
                      +++++++||+|||+.+||+++   |.. ++++|+|+++++|..+.+.|+=+.   .+++++|+|+|||+|||+.++ +|+
T Consensus        92 ~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~  171 (215)
T cd00714          92 GEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIV  171 (215)
T ss_pred             CCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEEE
Confidence            689999999999999999987   554 889999999999997544332111   168999999999999999875 999


Q ss_pred             EEee
Q 031334          146 VASV  149 (161)
Q Consensus       146 ~ARD  149 (161)
                      +|||
T Consensus       172 ~~RD  175 (215)
T cd00714         172 AARN  175 (215)
T ss_pred             EEEC
Confidence            9999

This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.

>PF13522 GATase_6: Glutamine amidotransferase domain

Probab=99.53  E-value=3e-14  Score=108.31  Aligned_cols=73  Identities=29%  Similarity=0.459  Sum_probs=64.8

Q ss_pred             eeCCEEEEecceecCHHHHHHHhCC---C-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEE
Q 031334           72 VKDEIFCLFEGALDNLGSLRQQYGL---A-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA  147 (161)
Q Consensus        72 ~~d~i~cvFnGeIyN~~eLr~qygl---s-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~A  147 (161)
                      ..+++++++||+|+|+.+||++++.   . ++.+|+|++.+++.   ++|    .+++++|+|+|||++||...++++++
T Consensus        38 ~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~---~~g----~~~l~~l~G~~a~~~~~~~~~~l~~~  110 (133)
T PF13522_consen   38 RDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIH---RWG----EEALERLDGAFAFAVYDKTPNKLFLA  110 (133)
T ss_pred             CCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHH---HHH----HHHHHHhcCceEEEEEEcCCCEEEEE
Confidence            3467999999999999999999843   4 78999999999985   466    77999999999999999999999999


Q ss_pred             eecc
Q 031334          148 SVGL  151 (161)
Q Consensus       148 RDr~  151 (161)
                      ||++
T Consensus       111 rd~~  114 (133)
T PF13522_consen  111 RDPL  114 (133)
T ss_pred             EcCC
Confidence            9987

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=99.49  E-value=1.5e-13  Score=125.61  Aligned_cols=78  Identities=21%  Similarity=0.326  Sum_probs=66.0

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECCC-CeE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-STL  144 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~t-~~l  144 (161)
                      .+++.+++||+|||+.+||+++   |+. ++++|+|||+++|..+.++|.=+.   .+++++|+|+|||+|||..+ +++
T Consensus        92 ~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l  171 (604)
T PRK00331         92 SGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDTI  171 (604)
T ss_pred             CCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCEE
Confidence            4789999999999999999987   554 889999999999997655552111   36899999999999999998 999


Q ss_pred             EEEeec
Q 031334          145 FVASVG  150 (161)
Q Consensus       145 f~ARDr  150 (161)
                      ++|||.
T Consensus       172 ~~~Rd~  177 (604)
T PRK00331        172 VAARNG  177 (604)
T ss_pred             EEEECC
Confidence            999994

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)

Probab=99.47  E-value=2.7e-13  Score=105.86  Aligned_cols=86  Identities=17%  Similarity=0.263  Sum_probs=68.2

Q ss_pred             ccccceeeeCCEEEEecceecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhhhcCC--CCccccccccCcceEEEEEE
Q 031334           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYD  138 (161)
Q Consensus        65 l~pr~F~~~d~i~cvFnGeIyN~~eLr~qyg---l-sks~sE~evvieaY~~lRdrGP--ypadqvv~~L~GmFAFvI~D  138 (161)
                      .||-.... +++++++||+|+|+.+||+++.   . .++.||+|+++.+|..+.+.+.  --..+++++++|.|||+|||
T Consensus        88 ~hPf~~~~-~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d  166 (220)
T cd00352          88 AQPFRSED-GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWD  166 (220)
T ss_pred             CCCcCcCC-CCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEE
Confidence            45533333 6999999999999999998874   2 3889999999999997432221  00146899999999999999


Q ss_pred             CCCCeEEEEeecc
Q 031334          139 KSTSTLFVASVGL  151 (161)
Q Consensus       139 ~~t~~lf~ARDr~  151 (161)
                      ..+++|+++||++
T Consensus       167 ~~~~~l~~~rd~~  179 (220)
T cd00352         167 GKPDRLFAARDRF  179 (220)
T ss_pred             CCCCEEEEEECCC
Confidence            9999999999985

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=99.47  E-value=2.5e-13  Score=124.19  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECCC-CeE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-STL  144 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~t-~~l  144 (161)
                      .+.+.+++||+|||+.+||+++   |+. ++++|+|||+++|..+.+.|+=+.   .+++++|+|+|||+|||... +++
T Consensus        91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l  170 (607)
T TIGR01135        91 GGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETL  170 (607)
T ss_pred             CCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEE
Confidence            3678999999999999999987   455 888999999999997544332110   16899999999999999887 469


Q ss_pred             EEEeec
Q 031334          145 FVASVG  150 (161)
Q Consensus       145 f~ARDr  150 (161)
                      +++||.
T Consensus       171 ~~~Rd~  176 (607)
T TIGR01135       171 VAARSG  176 (607)
T ss_pred             EEEECC
Confidence            999993

The member from Methanococcus jannaschii contains an intein.

>PRK08525 amidophosphoribosyltransferase; Provisional

Probab=99.45  E-value=2e-13  Score=122.86  Aligned_cols=76  Identities=14%  Similarity=0.220  Sum_probs=61.8

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--ccccccccCcceEEEEEECCCCeEEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp--adqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      .++++++|||+|||+.+||+++   |.. +|+||+|||+++|....+ +...  ..+++++|+|+|||+++|.  +++++
T Consensus        94 ~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~~ea~~~~~~~L~G~fa~vi~~~--~~l~~  170 (445)
T PRK08525         94 LGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESLKDRIIEALKKIIGAYCLVLLSR--SKMFA  170 (445)
T ss_pred             CCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCCceEEEEEeC--CEEEE
Confidence            4789999999999999999887   555 889999999999986321 1000  1358999999999999996  68999


Q ss_pred             Eeecc
Q 031334          147 ASVGL  151 (161)
Q Consensus       147 ARDr~  151 (161)
                      +||++
T Consensus       171 ~RD~~  175 (445)
T PRK08525        171 IRDPH  175 (445)
T ss_pred             EECCC
Confidence            99973

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.42  E-value=3.3e-13  Score=124.93  Aligned_cols=78  Identities=19%  Similarity=0.336  Sum_probs=65.2

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC---ccccccccCcceEEEEEECC-CCeE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP---PNHVVGHLSGYFAFIVYDKS-TSTL  144 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp---adqvv~~L~GmFAFvI~D~~-t~~l  144 (161)
                      .+++.+++||+|||+.+||+++   |.. ++++|+|||+++|....++|.-+   ..+++++|+|+|||+|||++ .++|
T Consensus       122 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l  201 (640)
T PTZ00295        122 KKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSL  201 (640)
T ss_pred             CCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEE
Confidence            3789999999999999999987   555 88999999999988655566211   12689999999999999987 5899


Q ss_pred             EEEeec
Q 031334          145 FVASVG  150 (161)
Q Consensus       145 f~ARDr  150 (161)
                      +++||+
T Consensus       202 ~~~Rd~  207 (640)
T PTZ00295        202 IVARNG  207 (640)
T ss_pred             EEEECC
Confidence            999996

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

Probab=99.39  E-value=1.4e-12  Score=108.83  Aligned_cols=75  Identities=20%  Similarity=0.307  Sum_probs=61.2

Q ss_pred             CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhh-hcCCCCcc----------------------cccc
Q 031334           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALR-DRAPYPPN----------------------HVVG  126 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lR-drGPypad----------------------qvv~  126 (161)
                      .++++++||+|||+.+||+++   |.. +++||+|++++.|..+. ++| .+.+                      .+++
T Consensus       103 ~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g-~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~  181 (249)
T cd01907         103 GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGG-LPLEYYKHIIRMPEEERELLLALRLTYRLA  181 (249)
T ss_pred             CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCC-ChHHHHHHHhcCCHhHHHHHHHHHHHhCcc
Confidence            489999999999999999886   444 88999999999987543 345 2222                      5889


Q ss_pred             ccCcceEEEEEECCCCeEEEEeecc
Q 031334          127 HLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       127 ~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      +|+|+|||+++|.  +.++++|||+
T Consensus       182 ~l~G~~a~~~~~~--~~~~~~RD~~  204 (249)
T cd01907         182 DLDGPFTIIVGTP--DGFIVIRDRI  204 (249)
T ss_pred             cCCCCEEEEEEeC--CeEEEEecCC
Confidence            9999999999996  4589999985

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.39  E-value=3.2e-13  Score=123.73  Aligned_cols=89  Identities=18%  Similarity=0.292  Sum_probs=73.7

Q ss_pred             EEEecCCCCCccccceeeeCCEEEEecceecCHHHHHHHhC-CC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcce
Q 031334           55 LAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-LA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYF  132 (161)
Q Consensus        55 lAys~~~~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qyg-ls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmF  132 (161)
                      ||..-.  .+--|..+..+..+.|..||||||+.+||+..- +. +|.+|.|+||+.|+.      ++-.|+..-|+|||
T Consensus        50 LAIvdp--~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~k------hg~~~~~~~LDG~F  121 (543)
T KOG0571|consen   50 LAIVDP--TSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYEK------HGGEQAICMLDGVF  121 (543)
T ss_pred             eeEecC--CcCCcccccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHhh------cCchhHHHHhhhhe
Confidence            444433  233444788889999999999999999998874 55 777888899999997      33378999999999


Q ss_pred             EEEEEECCCCeEEEEeecc
Q 031334          133 AFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       133 AFvI~D~~t~~lf~ARDr~  151 (161)
                      ||+++|.+..++.+|||.+
T Consensus       122 afvl~d~~~~kv~~aRDpi  140 (543)
T KOG0571|consen  122 AFVLLDTKDDKVVAARDPI  140 (543)
T ss_pred             EEEEecCCCCeEEeccCCc
Confidence            9999999999999999975

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type

Probab=99.36  E-value=2e-12  Score=106.94  Aligned_cols=77  Identities=12%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC-c-cccccccCcceEEEEEECCCCeEEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP-P-NHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp-a-dqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      .+++++++||+|||+.+||+++   |.. ++.||+|+++++|..+.+.+.+. + .+++++|+|+|||++||.  ++|++
T Consensus        93 ~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~~  170 (252)
T cd00715          93 LGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLIA  170 (252)
T ss_pred             CCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEEE
Confidence            4789999999999999999887   333 78899999999998632110000 0 158999999999999998  99999


Q ss_pred             Eeecc
Q 031334          147 ASVGL  151 (161)
Q Consensus       147 ARDr~  151 (161)
                      +||++
T Consensus       171 ~RD~~  175 (252)
T cd00715         171 VRDPH  175 (252)
T ss_pred             EECCC
Confidence            99973

This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.

>PRK09123 amidophosphoribosyltransferase; Provisional

Probab=99.35  E-value=1.4e-12  Score=118.90  Aligned_cols=76  Identities=17%  Similarity=0.265  Sum_probs=62.0

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--ccccccccCcceEEEEEECCCCeEEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp--adqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      .+++++++||+|||+.+||+++   |.. +++||+|||+++|..... +.+.  ..+++++|+|+|||+|||.  ++|++
T Consensus       115 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~~eai~~~~~~L~G~ya~vil~~--~~l~a  191 (479)
T PRK09123        115 FGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASFLDRFIDALRQVEGAYSLVALTN--TKLIG  191 (479)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhcceeEEEEEC--CEEEE
Confidence            4789999999999999999987   444 889999999999985321 1111  0458999999999999997  68999


Q ss_pred             Eeecc
Q 031334          147 ASVGL  151 (161)
Q Consensus       147 ARDr~  151 (161)
                      +||++
T Consensus       192 ~RD~~  196 (479)
T PRK09123        192 ARDPL  196 (479)
T ss_pred             EECCC
Confidence            99985

>PRK07631 amidophosphoribosyltransferase; Provisional

Probab=99.34  E-value=3.7e-12  Score=116.30  Aligned_cols=82  Identities=18%  Similarity=0.274  Sum_probs=64.7

Q ss_pred             ccccce-eeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc----cccccccCcceEEE
Q 031334           65 LRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP----NHVVGHLSGYFAFI  135 (161)
Q Consensus        65 l~pr~F-~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa----dqvv~~L~GmFAFv  135 (161)
                      .||-.+ ...+++++++||+|||+.+||+++   |.. ++++|+|||+++|..   ++....    ..++++|+|+|||+
T Consensus        95 ~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~---~~~~~~~eai~~~~~~l~G~yalv  171 (475)
T PRK07631         95 VQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKR---SGAPTLKEQIKNALSMLKGAYAFL  171 (475)
T ss_pred             cCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHhCCCCceee
Confidence            455322 234789999999999999999887   555 889999999999986   331111    25889999999999


Q ss_pred             EEECCCCeEEEEeecc
Q 031334          136 VYDKSTSTLFVASVGL  151 (161)
Q Consensus       136 I~D~~t~~lf~ARDr~  151 (161)
                      |||.  +.+++|||++
T Consensus       172 i~~~--~~l~aaRDp~  185 (475)
T PRK07631        172 LMTE--TELYVALDPN  185 (475)
T ss_pred             EEeC--CEEEEEECCC
Confidence            9996  6799999975

>PRK06388 amidophosphoribosyltransferase; Provisional

Probab=99.33  E-value=3.7e-12  Score=116.19  Aligned_cols=76  Identities=14%  Similarity=0.150  Sum_probs=62.4

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhh-hcCCCC--ccccccccCcceEEEEEECCCCeEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALR-DRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLF  145 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lR-drGPyp--adqvv~~L~GmFAFvI~D~~t~~lf  145 (161)
                      .+++.+++||+|||+.+||+++   |.. ++++|+|||+++|.... .+| +.  ..+++++|+|+|||+|.+.  ++|+
T Consensus       111 ~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~-~~eai~~~~~~l~G~ya~vi~~~--~~l~  187 (474)
T PRK06388        111 LGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYG-LKEGFERSMERLRGAYACALMIN--DRLY  187 (474)
T ss_pred             CCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHHhccCceeEEEEEC--CEEE
Confidence            4689999999999999999987   555 88999999999996432 333 11  1358999999999999976  7899


Q ss_pred             EEeecc
Q 031334          146 VASVGL  151 (161)
Q Consensus       146 ~ARDr~  151 (161)
                      ++||++
T Consensus       188 a~RDp~  193 (474)
T PRK06388        188 AIRDPN  193 (474)
T ss_pred             EEECCC
Confidence            999986

>PRK08341 amidophosphoribosyltransferase; Provisional

Probab=99.32  E-value=5e-12  Score=114.34  Aligned_cols=76  Identities=18%  Similarity=0.263  Sum_probs=60.0

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHH-HhhhcCCCC--ccccccccCcceEEEEEECCCCeEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYK-ALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLF  145 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~-~lRdrGPyp--adqvv~~L~GmFAFvI~D~~t~~lf  145 (161)
                      .+.+.+++||+|||+.+||+++   |.. +|+||+|||++... .++++|..-  ..+++++|+|+|||+|.+.  ++|+
T Consensus        93 ~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~  170 (442)
T PRK08341         93 GYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKII  170 (442)
T ss_pred             CCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEE
Confidence            3689999999999999999887   555 88899999977543 233456210  1247899999999999986  7899


Q ss_pred             EEeec
Q 031334          146 VASVG  150 (161)
Q Consensus       146 ~ARDr  150 (161)
                      ++||+
T Consensus       171 a~RD~  175 (442)
T PRK08341        171 VARDP  175 (442)
T ss_pred             EEEcC
Confidence            99997

>PRK07272 amidophosphoribosyltransferase; Provisional

Probab=99.30  E-value=5.5e-12  Score=115.37  Aligned_cols=76  Identities=17%  Similarity=0.273  Sum_probs=61.5

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--ccccccccCcceEEEEEECCCCeEEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp--adqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      .+++++++||+|||+.+||+++   |.. +++||+|||+++|..... +.+.  ..+++++|+|+|||+|+|.  ++|++
T Consensus       105 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~~i~~~--~~l~a  181 (484)
T PRK07272        105 DMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTFMGKLKEALNTVKGGFAYLLLTE--DKLIA  181 (484)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHccCceeEEEEEC--CEEEE
Confidence            5789999999999999999987   555 889999999999985221 1000  1368899999999999996  68999


Q ss_pred             Eeecc
Q 031334          147 ASVGL  151 (161)
Q Consensus       147 ARDr~  151 (161)
                      +||++
T Consensus       182 ~RDp~  186 (484)
T PRK07272        182 ALDPN  186 (484)
T ss_pred             EECCC
Confidence            99964

>PRK07349 amidophosphoribosyltransferase; Provisional

Probab=99.29  E-value=7.2e-12  Score=115.07  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcC-CCC--ccccccccCcceEEEEEECCCCeEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRA-PYP--PNHVVGHLSGYFAFIVYDKSTSTLF  145 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrG-Pyp--adqvv~~L~GmFAFvI~D~~t~~lf  145 (161)
                      .+++++++||+|||+.+||+++   |.. +++||+|||+++|....+.| .|.  ..+++++|+|+|||+|.|.  ++|+
T Consensus       127 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~  204 (500)
T PRK07349        127 LGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTP--EGLM  204 (500)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEE
Confidence            4789999999999999999987   555 88999999999998644333 222  1358899999999999875  6799


Q ss_pred             EEeecc
Q 031334          146 VASVGL  151 (161)
Q Consensus       146 ~ARDr~  151 (161)
                      ++||++
T Consensus       205 aaRDp~  210 (500)
T PRK07349        205 GVRDPN  210 (500)
T ss_pred             EEECCC
Confidence            999986

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.28  E-value=7.6e-12  Score=117.54  Aligned_cols=78  Identities=15%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHH-hhhcCCCCc----cccccccCcceEEEEEECC-CC
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA-LRDRAPYPP----NHVVGHLSGYFAFIVYDKS-TS  142 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~-lRdrGPypa----dqvv~~L~GmFAFvI~D~~-t~  142 (161)
                      .+++++++||+||||.+||+++   |.. +|+||+|||++.... +++||....    .+++++|+|||||+|.+.. -+
T Consensus       124 ~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~  203 (670)
T PTZ00394        124 NGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPG  203 (670)
T ss_pred             CCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCC
Confidence            5789999999999999999987   555 889999999965332 124662111    2789999999999999654 49


Q ss_pred             eEEEEeec
Q 031334          143 TLFVASVG  150 (161)
Q Consensus       143 ~lf~ARDr  150 (161)
                      ++++|||.
T Consensus       204 ~l~~~Rd~  211 (670)
T PTZ00394        204 QLAASRKG  211 (670)
T ss_pred             EEEEEEcC
Confidence            99999996

>PRK07847 amidophosphoribosyltransferase; Provisional

Probab=99.26  E-value=1e-11  Score=114.32  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CC------CCCCchHHHHHHHHHHhhhcCCCCc--cccccccCcceEEEEEECCC
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALRDRAPYPP--NHVVGHLSGYFAFIVYDKST  141 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gl------sks~sE~evvieaY~~lRdrGPypa--dqvv~~L~GmFAFvI~D~~t  141 (161)
                      .+++.+++||+|||+.+||+++   |.      -+++||+|||++++..+.+.|.+..  .+++++|+|+|||+|||.  
T Consensus       118 ~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~--  195 (510)
T PRK07847        118 GGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE--  195 (510)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--
Confidence            5789999999999999999987   53      2789999999999986432221111  258999999999999996  


Q ss_pred             CeEEEEeec
Q 031334          142 STLFVASVG  150 (161)
Q Consensus       142 ~~lf~ARDr  150 (161)
                      ++|+++||+
T Consensus       196 ~~L~aaRDp  204 (510)
T PRK07847        196 HTLYAARDP  204 (510)
T ss_pred             CEEEEEECC
Confidence            689999997

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=99.26  E-value=2.1e-11  Score=114.49  Aligned_cols=78  Identities=18%  Similarity=0.282  Sum_probs=62.9

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHH-hhhcCCC-C---c----cccccccCcceEEEEEEC
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA-LRDRAPY-P---P----NHVVGHLSGYFAFIVYDK  139 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~-lRdrGPy-p---a----dqvv~~L~GmFAFvI~D~  139 (161)
                      .+.+.+++||+|||+.+||+++   |.. +|++|+|||+++... +++||+. +   .    .+++++|+|+|||+|.++
T Consensus       114 ~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~  193 (680)
T PLN02981        114 GNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSP  193 (680)
T ss_pred             CCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEec
Confidence            4789999999999999999987   555 889999999998332 2246642 1   1    158999999999999997


Q ss_pred             CC-CeEEEEeec
Q 031334          140 ST-STLFVASVG  150 (161)
Q Consensus       140 ~t-~~lf~ARDr  150 (161)
                      .. +++++|||.
T Consensus       194 ~~~~~i~~~r~~  205 (680)
T PLN02981        194 HYPNELVACKRG  205 (680)
T ss_pred             CCCCeEEEEecC
Confidence            75 999999993

>PLN02440 amidophosphoribosyltransferase

Probab=99.26  E-value=9.5e-12  Score=113.14  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=61.2

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhh-----hcCCCCccccccccCcceEEEEEECCCCe
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALR-----DRAPYPPNHVVGHLSGYFAFIVYDKSTST  143 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lR-----drGPypadqvv~~L~GmFAFvI~D~~t~~  143 (161)
                      .+++++++||+|+|+.+||+++   |.. +++||+|+|+++|....     +++    .+++++|+|+|||+|||.  ++
T Consensus        94 ~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~----~~~~~~l~G~fa~vi~~~--~~  167 (479)
T PLN02440         94 FGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRI----VDACEKLKGAYSMVFLTE--DK  167 (479)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHH----HHHHHHhccceeeeEEEC--CE
Confidence            3579999999999999999987   443 78899999999997531     233    568999999999999996  46


Q ss_pred             EEEEeecc
Q 031334          144 LFVASVGL  151 (161)
Q Consensus       144 lf~ARDr~  151 (161)
                      |+++||++
T Consensus       168 l~a~RD~~  175 (479)
T PLN02440        168 LVAVRDPH  175 (479)
T ss_pred             EEEEECCC
Confidence            99999976

>PRK06781 amidophosphoribosyltransferase; Provisional

Probab=99.25  E-value=1.7e-11  Score=111.65  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=61.1

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCC--CccccccccCcceEEEEEECCCCeEEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPY--PPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPy--padqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      .+++++++||+|||+.+||+++   |.. +++||+|||+++|..... +.+  -...++++|+|+|||+++|.  +++++
T Consensus       104 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a  180 (471)
T PRK06781        104 DHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-DSLIESVKEALNKVKGAFAYLLLTG--NEMIV  180 (471)
T ss_pred             CCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCcEEEEEEEC--CEEEE
Confidence            5789999999999999999997   444 889999999999985221 100  01356899999999999996  78999


Q ss_pred             Eeecc
Q 031334          147 ASVGL  151 (161)
Q Consensus       147 ARDr~  151 (161)
                      |||++
T Consensus       181 aRD~~  185 (471)
T PRK06781        181 ALDPN  185 (471)
T ss_pred             EECCC
Confidence            99984

>PRK05793 amidophosphoribosyltransferase; Provisional

Probab=99.15  E-value=8.2e-11  Score=106.85  Aligned_cols=77  Identities=12%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCC-CccccccccCcceEEEEEECCCCeEEEE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPY-PPNHVVGHLSGYFAFIVYDKSTSTLFVA  147 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPy-padqvv~~L~GmFAFvI~D~~t~~lf~A  147 (161)
                      .+++.+++||+|+|+.+||+++   |.. +++||+|+|++++....+.++- -..+++++|+|+|||+++|.  ++++++
T Consensus       109 ~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~  186 (469)
T PRK05793        109 LGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIGV  186 (469)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEEE
Confidence            4789999999999999999987   444 7889999999999863221100 00258999999999999986  789999


Q ss_pred             eecc
Q 031334          148 SVGL  151 (161)
Q Consensus       148 RDr~  151 (161)
                      ||++
T Consensus       187 RD~~  190 (469)
T PRK05793        187 RDPH  190 (469)
T ss_pred             ECCC
Confidence            9974

>TIGR01134 purF amidophosphoribosyltransferase

Probab=99.13  E-value=2.9e-10  Score=102.36  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=59.7

Q ss_pred             CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc----cccccccCcceEEEEEECCCCeEE
Q 031334           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP----NHVVGHLSGYFAFIVYDKSTSTLF  145 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa----dqvv~~L~GmFAFvI~D~~t~~lf  145 (161)
                      +++.+++||+|+|+.+||+++   |.. ++.+|+|+|+++|......+ ...    .+++++|+|+|||++||.  ++|+
T Consensus        94 ~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~-~~~~~ai~~~~~~l~G~falvi~~~--~~L~  170 (442)
T TIGR01134        94 GGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEE-DDLFEAIARVLKRVRGAYALVIMIG--DGLI  170 (442)
T ss_pred             CCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhccc-CCHHHHHHHHHHHhCccceEEEEEC--CEEE
Confidence            459999999999999999887   433 78899999999998632101 011    258899999999999974  6899


Q ss_pred             EEeecc
Q 031334          146 VASVGL  151 (161)
Q Consensus       146 ~ARDr~  151 (161)
                      ++||++
T Consensus       171 a~RD~~  176 (442)
T TIGR01134       171 AVRDPH  176 (442)
T ss_pred             EEECCC
Confidence            999974

Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.

>PRK09246 amidophosphoribosyltransferase; Provisional

Probab=99.13  E-value=1.4e-10  Score=105.93  Aligned_cols=85  Identities=13%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             ccccceeeeCCEEEEecceecCHHHHHHHh----CCC-CCCchHHHHHHHHHHhhhc--C--CCCcc------ccccccC
Q 031334           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQY----GLA-KSANEVILVIEAYKALRDR--A--PYPPN------HVVGHLS  129 (161)
Q Consensus        65 l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy----gls-ks~sE~evvieaY~~lRdr--G--Pypad------qvv~~L~  129 (161)
                      .||=.....+++.+++||+|||+.+||+++    |.. +++||+|||+++|....+.  |  +=+.+      +++++|+
T Consensus        85 ~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~  164 (501)
T PRK09246         85 AQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVR  164 (501)
T ss_pred             CCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcc
Confidence            355222233459999999999999999886    222 8899999999999863222  2  00112      6899999


Q ss_pred             cceEEEEEECCCCeEEEEeec
Q 031334          130 GYFAFIVYDKSTSTLFVASVG  150 (161)
Q Consensus       130 GmFAFvI~D~~t~~lf~ARDr  150 (161)
                      |+|||++|. ..++|+++||+
T Consensus       165 Gays~v~~~-~~~~l~a~RDp  184 (501)
T PRK09246        165 GAYAVVAMI-IGHGLVAFRDP  184 (501)
T ss_pred             cceeeEEEe-cCCcEEEEECC
Confidence            999999984 34569999996

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=98.86  E-value=2.9e-09  Score=100.22  Aligned_cols=76  Identities=18%  Similarity=0.366  Sum_probs=63.6

Q ss_pred             CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc-cccccccCcceEEEEEECCC-CeEEEE
Q 031334           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP-NHVVGHLSGYFAFIVYDKST-STLFVA  147 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa-dqvv~~L~GmFAFvI~D~~t-~~lf~A  147 (161)
                      +++.+|-||-|.||.+||++|   |+. +|+||||||-++....-+.|..-+ .+++++|+|.||+++-|+.. .++++|
T Consensus        92 ~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~a  171 (597)
T COG0449          92 GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAA  171 (597)
T ss_pred             CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEE
Confidence            999999999999999999998   676 999999999998875444441111 36899999999999999987 789999


Q ss_pred             ee
Q 031334          148 SV  149 (161)
Q Consensus       148 RD  149 (161)
                      |-
T Consensus       172 r~  173 (597)
T COG0449         172 RK  173 (597)
T ss_pred             cC
Confidence            84

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]

Probab=98.14  E-value=3.5e-06  Score=78.13  Aligned_cols=72  Identities=21%  Similarity=0.357  Sum_probs=56.6

Q ss_pred             eeeCCEEEEecceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeec
Q 031334           71 AVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVG  150 (161)
Q Consensus        71 ~~~d~i~cvFnGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr  150 (161)
                      -+++.++..|||||||-.       .+.+.+|+..|.+.-..+++-|  ..-++++.++|.|||++||.++++||..||+
T Consensus        66 v~d~~~vfl~NGeIyn~~-------~s~~~~d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~  136 (520)
T KOG0573|consen   66 VEDDRYVFLFNGEIYNGE-------KSDTLFDTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDD  136 (520)
T ss_pred             ecccceEEEecceeccCC-------CccccchHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEeccc
Confidence            344448899999999953       2455668888888888777544  2335778899999999999999999999997


Q ss_pred             c
Q 031334          151 L  151 (161)
Q Consensus       151 ~  151 (161)
                      +
T Consensus       137 ~  137 (520)
T KOG0573|consen  137 I  137 (520)
T ss_pred             c
Confidence            5

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=97.82  E-value=5.9e-05  Score=69.86  Aligned_cols=95  Identities=16%  Similarity=0.218  Sum_probs=68.8

Q ss_pred             eEEEEecCCCCC---ccc--cceeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhc-CCCC-c
Q 031334           53 VTLAYTHQNESP---LRQ--RSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDR-APYP-P  121 (161)
Q Consensus        53 ~~lAys~~~~~~---l~p--r~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdr-GPyp-a  121 (161)
                      +..-|+-+..+.   .+|  ..+. .+.+.++.||.|-|..+||+++   |.- .+++|+||+++++..=+++ +... .
T Consensus        76 GHvRYsTaG~s~~~naQP~~~~~~-~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~  154 (470)
T COG0034          76 GHVRYSTAGSSSIENAQPFYVNSP-GGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAV  154 (470)
T ss_pred             eEeeecCCCCcccccccceEEecC-CCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHH
Confidence            557787766441   233  1122 3569999999999999999997   444 7889999999999853321 1000 1


Q ss_pred             cccccccCcceEEEEEECCCCeEEEEeec
Q 031334          122 NHVVGHLSGYFAFIVYDKSTSTLFVASVG  150 (161)
Q Consensus       122 dqvv~~L~GmFAFvI~D~~t~~lf~ARDr  150 (161)
                      .++++++.|-||+++-.+.  .|+.+||.
T Consensus       155 ~~~~~~v~G~ys~v~~~~~--~lia~RDP  181 (470)
T COG0034         155 KEVLRRVKGAYALVALIKD--GLIAVRDP  181 (470)
T ss_pred             HHHHhhcCCcEEEEEEECC--eEEEEECC
Confidence            3577899999999999875  99999994

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type

Probab=97.79  E-value=5.2e-05  Score=63.08  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             CCEEEEecceecCHHHHHHHhC----C-CCCCchHHHHHHHHHHh-hhcCCCC-------ccccccccC-----cceEEE
Q 031334           74 DEIFCLFEGALDNLGSLRQQYG----L-AKSANEVILVIEAYKAL-RDRAPYP-------PNHVVGHLS-----GYFAFI  135 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qyg----l-sks~sE~evvieaY~~l-RdrGPyp-------adqvv~~L~-----GmFAFv  135 (161)
                      ++++++.||.|+|+.+||..+.    . -+++||+|++.+..... ++.++-+       ..+.++.|+     |.++|+
T Consensus       106 ~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~n~~  185 (257)
T cd01908         106 GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLNLL  185 (257)
T ss_pred             CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCcCeEEEEE
Confidence            3899999999999999998762    2 27788888888777543 3333210       134677888     789999


Q ss_pred             EEECCCCeEEEEeecc
Q 031334          136 VYDKSTSTLFVASVGL  151 (161)
Q Consensus       136 I~D~~t~~lf~ARDr~  151 (161)
                      +-|.  .+++++||+.
T Consensus       186 ~~dg--~~l~a~r~~~  199 (257)
T cd01908         186 LSDG--EYLIATRYAS  199 (257)
T ss_pred             EECC--CEEEEEEeCC
Confidence            8886  7799999985

YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=97.28  E-value=0.001  Score=60.80  Aligned_cols=72  Identities=8%  Similarity=0.054  Sum_probs=55.2

Q ss_pred             EEEecceecCHHHHHHHhC---------------------CCCCCchHHHHHHHHHHhhhcCCCCcc-------------
Q 031334           77 FCLFEGALDNLGSLRQQYG---------------------LAKSANEVILVIEAYKALRDRAPYPPN-------------  122 (161)
Q Consensus        77 ~cvFnGeIyN~~eLr~qyg---------------------lsks~sE~evvieaY~~lRdrGPypad-------------  122 (161)
                      +++.||||+|+..+|....                     ...+.||++++.++...|-..|. +..             
T Consensus       226 ~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~-~l~~A~~mliPeaw~~  304 (413)
T cd00713         226 YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGR-SLPEAMMMLIPEAWQN  304 (413)
T ss_pred             eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCC-CHHHHHHHhCChhhcc
Confidence            4899999999999996531                     12468888899998876665553 332             


Q ss_pred             ----------------ccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          123 ----------------HVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       123 ----------------qvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                                      .+.+.++|-||+++-|.  +.+.++|||.
T Consensus       305 ~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrn  347 (413)
T cd00713         305 NPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRN  347 (413)
T ss_pred             CccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCC
Confidence                            23478999999999885  6899999985

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=97.03  E-value=0.00035  Score=66.43  Aligned_cols=104  Identities=18%  Similarity=0.285  Sum_probs=69.7

Q ss_pred             EEEEeCCCeEEEEec-------CCCCCccccceeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHh
Q 031334           45 VSVQVGDNVTLAYTH-------QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKAL  113 (161)
Q Consensus        45 ~s~~~g~~~~lAys~-------~~~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~l  113 (161)
                      .+..|-..+.+|-+.       +..|.--+|+ .-.++...|.||-|-||.+||..+   |+. .++||||++-..|+.+
T Consensus        73 l~~~f~sH~gIAHTRWATHGvPs~~NsHP~rS-d~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~  151 (670)
T KOG1268|consen   73 LDEKFISHCGIAHTRWATHGVPSEVNCHPHRS-DPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHI  151 (670)
T ss_pred             cceeeeeeeeeeeeehhhcCCCCccCCCCCcC-CCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHH
Confidence            444455556666542       2222222232 233566677999999999999765   776 7788888998888865


Q ss_pred             hhcCCC--C----ccccccccCcceEEEEEECC-CCeEEEEee
Q 031334          114 RDRAPY--P----PNHVVGHLSGYFAFIVYDKS-TSTLFVASV  149 (161)
Q Consensus       114 RdrGPy--p----adqvv~~L~GmFAFvI~D~~-t~~lf~ARD  149 (161)
                      -|.-|-  -    .++|+++|+|.||+++=-+. -+++...|+
T Consensus       152 ~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr  194 (670)
T KOG1268|consen  152 YDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARK  194 (670)
T ss_pred             HhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeecc
Confidence            554421  0    57899999999999875432 477777777

>TIGR03442 conserved hypothetical protein TIGR03442

Probab=96.87  E-value=0.0027  Score=53.66  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=55.3

Q ss_pred             CCEEEEecceecCHH-----HHHHHh---CC--CCCCchHHHHHHHHHHh-hhcCCCCcc----ccccccCcc-------
Q 031334           74 DEIFCLFEGALDNLG-----SLRQQY---GL--AKSANEVILVIEAYKAL-RDRAPYPPN----HVVGHLSGY-------  131 (161)
Q Consensus        74 d~i~cvFnGeIyN~~-----eLr~qy---gl--sks~sE~evvieaY~~l-RdrGPypad----qvv~~L~Gm-------  131 (161)
                      ++++++.||.|.|+.     +||+++   |+  -+++||+|++....... ++.+|....    ++++.|.|.       
T Consensus       109 g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~  188 (251)
T TIGR03442       109 GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILFSAAAAPRVR  188 (251)
T ss_pred             CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhCcccc
Confidence            789999999999997     566554   32  36788888888777654 343333322    466667777       


Q ss_pred             eEEEEEECCCCeEEEEeecc
Q 031334          132 FAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       132 FAFvI~D~~t~~lf~ARDr~  151 (161)
                      |.|++=|.  .+|++.||.-
T Consensus       189 ~n~~~sdg--~~l~a~R~~~  206 (251)
T TIGR03442       189 LNLLLTDG--SRLVATRWAD  206 (251)
T ss_pred             eEEEEEcC--CEEEEEEeCC
Confidence            99999984  8899889963

Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=96.44  E-value=0.008  Score=55.62  Aligned_cols=95  Identities=19%  Similarity=0.348  Sum_probs=64.7

Q ss_pred             eEEEEecCCCC---Cccccceee---eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHh-----h-hc
Q 031334           53 VTLAYTHQNES---PLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKAL-----R-DR  116 (161)
Q Consensus        53 ~~lAys~~~~~---~l~pr~F~~---~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~l-----R-dr  116 (161)
                      +.+-||-+..+   --+|  |-+   -+.+.+..||++-|+.+||+++   |.. .|+||+|+|++....-     | |-
T Consensus        73 GH~RYsTaG~s~~~n~QP--Fvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~  150 (474)
T KOG0572|consen   73 GHTRYSTAGSSALSNVQP--FVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDA  150 (474)
T ss_pred             eeeecccccccccccccc--eEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccC
Confidence            45667765544   1222  433   3568999999999999999886   444 6677777888765421     1 23


Q ss_pred             CCCCc--cccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          117 APYPP--NHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       117 GPypa--dqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      ++|++  .++-+.++|.|+.++--.  +.|+..||.+
T Consensus       151 ~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~  185 (474)
T KOG0572|consen  151 PDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPY  185 (474)
T ss_pred             ccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCC
Confidence            33443  257889999999888754  4499999965

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group

Probab=96.43  E-value=0.014  Score=52.26  Aligned_cols=113  Identities=12%  Similarity=0.099  Sum_probs=68.2

Q ss_pred             CChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCC---CccccceeeeCCEEEEecceecCHHHHHHHh---CCC-CC-
Q 031334           28 TTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNES---PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KS-   99 (161)
Q Consensus        28 ~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~---~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks-   99 (161)
                      ..+++|.+-|....-..+.-.++ -++.=||-.-.+   .-||  |-     +++-||||.|+..+|+.+   +.. ++ 
T Consensus       176 ~~~~~l~~~y~Dl~~~~~~s~~~-i~H~RysTnt~p~w~~AqP--f~-----~laHNGeInt~~~n~~~l~~r~~~~~~~  247 (361)
T PF00310_consen  176 GTPEQLAEFYPDLQDEDFKSHFA-IGHQRYSTNTFPSWENAQP--FR-----ALAHNGEINTIRGNRNWLEARGYKLNSP  247 (361)
T ss_dssp             C-GGGHHHHCCGGGCTTEEBSEE-EEEEEE-SSSSCSGGGSSS--EE-----EEEEEEEETTHHHHHHHHHHHCCCBSST
T ss_pred             cCHHHHHHHHHhhccccccceEE-EEEEecCCCCCCcchhcCh--HH-----HhhhccccccHHHHHHHHHhhcccccCc
Confidence            46677777775533222221111 123334433222   2234  11     888999999999999663   332 43 


Q ss_pred             ---------------CchHHHHHHHHHHhhhcCCCCcc-----------------------------ccccccCcceEEE
Q 031334          100 ---------------ANEVILVIEAYKALRDRAPYPPN-----------------------------HVVGHLSGYFAFI  135 (161)
Q Consensus       100 ---------------~sE~evvieaY~~lRdrGPypad-----------------------------qvv~~L~GmFAFv  135 (161)
                                     .||++++.++...|-+.| ++..                             ++.+.++|-||++
T Consensus       248 ~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g-~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~  326 (361)
T PF00310_consen  248 LFGDLKELLPIVNPGGSDSEVLDNLLELLLRRG-RSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAII  326 (361)
T ss_dssp             TCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTT-SSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEE
T ss_pred             cccchhhcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEE
Confidence                           889999999888888888 2221                             3467799999999


Q ss_pred             EEECCCCeEEEEeecc
Q 031334          136 VYDKSTSTLFVASVGL  151 (161)
Q Consensus       136 I~D~~t~~lf~ARDr~  151 (161)
                      +-|..  .++++|||.
T Consensus       327 ~~~g~--~~~a~~Dr~  340 (361)
T PF00310_consen  327 FTDGN--GVGAFLDRN  340 (361)
T ss_dssp             EECSS--EEEEEE-TT
T ss_pred             EEeCC--EEEEEECCC
Confidence            98764  599999974

This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices

Probab=91.40  E-value=1.5  Score=37.08  Aligned_cols=71  Identities=21%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             eeeCCEEEEecceecCHHHHHHHhCC----CCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEE
Q 031334           71 AVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        71 ~~~d~i~cvFnGeIyN~~eLr~qygl----sks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      +..+....-.-|.|||-.-||.-.|.    .-.-||+|+++-.|-.   -|    ...+.--+|.|.|.|=|+ .++|.+
T Consensus        44 ~~~~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~---lG----~~aLsLAEGdfcffiE~k-ng~L~l  115 (201)
T PF09147_consen   44 MRFERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTR---LG----NSALSLAEGDFCFFIEDK-NGELTL  115 (201)
T ss_dssp             EEETTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHH---H-----GGGGGG--SSEEEEEEET-TSEEEE
T ss_pred             EEecCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHH---hh----hhhhhhhcCceEEEEecC-CCcEEE
Confidence            45566666677999999999977654    3678999999999886   45    679999999999999764 578887


Q ss_pred             Eee
Q 031334          147 ASV  149 (161)
Q Consensus       147 ARD  149 (161)
                      -.|
T Consensus       116 ~Td  118 (201)
T PF09147_consen  116 ITD  118 (201)
T ss_dssp             EE-
T ss_pred             Eec
Confidence            777

Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.

>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D

Probab=88.46  E-value=1.1  Score=38.26  Aligned_cols=74  Identities=16%  Similarity=0.316  Sum_probs=44.3

Q ss_pred             CCEEEEecceecCHHHHH-HHhCCCCCCchHHHHHHHH-HHhhhcCCC---Ccc-------ccccccC--cceEEEEEEC
Q 031334           74 DEIFCLFEGALDNLGSLR-QQYGLAKSANEVILVIEAY-KALRDRAPY---PPN-------HVVGHLS--GYFAFIVYDK  139 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr-~qyglsks~sE~evvieaY-~~lRdrGPy---pad-------qvv~~L~--GmFAFvI~D~  139 (161)
                      ++++.+.||.|+++..++ ..|- -.++||+|.+.... ..|++.++-   ..+       +.+++++  |.+.|++.|-
T Consensus       101 ~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG  179 (271)
T PF13230_consen  101 RRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSDG  179 (271)
T ss_dssp             TTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-S
T ss_pred             CcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEECC
Confidence            788999999999998877 3343 45556666665553 355665531   111       2234444  7899999996


Q ss_pred             CCCeEEEEeec
Q 031334          140 STSTLFVASVG  150 (161)
Q Consensus       140 ~t~~lf~ARDr  150 (161)
                        ..||+-|++
T Consensus       180 --~~l~a~~~~  188 (271)
T PF13230_consen  180 --ERLFAHRYT  188 (271)
T ss_dssp             --S-EEEEEEE
T ss_pred             --ceEEEEEcC
Confidence              689999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	99.75
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	99.74
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	99.7
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.6
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	99.59
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	99.51
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	99.38
3mdn_A	274	Glutamine aminotransferase class-II domain protei;	99.2
1te5_A	257	Conserved hypothetical protein; glutamine amidotra	97.56
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	96.27
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	95.74
4afx_B	36	Protein Z dependent protease inhibitor; hydrolase	80.32

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=99.75  E-value=1.7e-18  Score=155.00  Aligned_cols=69  Identities=16%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             CCEEEEecceecCHHHHHHHhCCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031334           74 DEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qygls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      ++++++|||||||+.+||+++++. +|+||||||+++|++   ||    .+++++|+|||||||||.++  |++||||+
T Consensus        69 ~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~---~g----~~~~~~l~G~fA~~i~d~~~--l~~aRD~~  138 (513)
T 1jgt_A           69 APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER---YD----LHAFRLVNGRFATVVRTGDR--VLLATDHA  138 (513)
T ss_dssp             SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH---HG----GGGGGTCCEEEEEEEEETTE--EEEEECTT
T ss_pred             CCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHH---Hh----HHhHhhcCeeEEEEEEECCE--EEEEECCC
Confidence            689999999999999999998754 889999999999996   77    57999999999999999876  99999975

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=99.74  E-value=1e-17  Score=151.12  Aligned_cols=104  Identities=18%  Similarity=0.349  Sum_probs=80.8

Q ss_pred             CCCCcEEEEeCCCeEEEEecCCC----CCccccceeeeCCEEEEecceecCHHHHHHHhCC--C-CCCchHHHHHHHHHH
Q 031334           40 TNSSAVSVQVGDNVTLAYTHQNE----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL--A-KSANEVILVIEAYKA  112 (161)
Q Consensus        40 ~~~~a~s~~~g~~~~lAys~~~~----~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qygl--s-ks~sE~evvieaY~~  112 (161)
                      .=|++.-+-..+.+.|+.+.-..    .--|| .....++++++|||||||+.+||+++..  . +++||+|||+++|..
T Consensus        30 RGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP-~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvil~l~~~  108 (553)
T 1ct9_A           30 RGPDWSGIYASDNAILAHERLSIVDVNAGAQP-LYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQE  108 (553)
T ss_dssp             GCBTEEEEEECSSEEEEEEECCCSCTTTCCSS-EECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHH
T ss_pred             cCCCcccEEEECCEEEEEEeeeeeCCCCCCCC-eEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcHHHHHHHHHH
Confidence            44577777666666777653211    12233 2234567999999999999999999842  2 788889999999996


Q ss_pred             hhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          113 LRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       113 lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                         ||    .+++++|+|||||||||.++++|++||||+
T Consensus       109 ---~g----~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~  140 (553)
T 1ct9_A          109 ---KG----PEFLDDLQGMFAFALYDSEKDAYLIGRDHL  140 (553)
T ss_dssp             ---HT----TTTGGGCCEEEEEEEEETTTTEEEEEECTT
T ss_pred             ---HH----HHHHHhCCccEEEEEEECCCCEEEEEECCC
Confidence               67    569999999999999999999999999985

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*

Probab=99.70  E-value=5e-17  Score=131.56  Aligned_cols=77  Identities=18%  Similarity=0.316  Sum_probs=65.1

Q ss_pred             CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECC-CCeEE
Q 031334           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKS-TSTLF  145 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~-t~~lf  145 (161)
                      +++++++||+|||+.+||+++   |+. ++.||+|+|+++|..+.+.|+-..   .+++++|+|||||+|||.+ .++||
T Consensus        91 ~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~~~~~~l~  170 (240)
T 1xff_A           91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLL  170 (240)
T ss_dssp             TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTCEE
T ss_pred             CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEecCCCCEEE
Confidence            899999999999999999887   555 788999999999997544452111   1799999999999999986 69999


Q ss_pred             EEeec
Q 031334          146 VASVG  150 (161)
Q Consensus       146 ~ARDr  150 (161)
                      +|||+
T Consensus       171 ~~Rd~  175 (240)
T 1xff_A          171 AARSG  175 (240)
T ss_dssp             EEEEB
T ss_pred             EEECC
Confidence            99998

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=99.60  E-value=1.1e-15  Score=136.21  Aligned_cols=92  Identities=14%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             EEEeCCCeEEEEecCCCCCccccceeeeCCEEEEecceecCHH---HHHHHhCCC-CCCchHHHHHHHHHHhhhcCCCCc
Q 031334           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLG---SLRQQYGLA-KSANEVILVIEAYKALRDRAPYPP  121 (161)
Q Consensus        46 s~~~g~~~~lAys~~~~~~l~pr~F~~~d~i~cvFnGeIyN~~---eLr~qygls-ks~sE~evvieaY~~lRdrGPypa  121 (161)
                      .+.+|. .-+|...  ..--+| +....+.++++  |||||+.   +||+++.-. ++.||||||+++|..   ||    
T Consensus        27 ~~~igh-~R~~t~~--~~~~QP-~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~---~g----   93 (503)
T 1q15_A           27 GEALSN-GYLFIEQ--NGHYQK-CEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR---LG----   93 (503)
T ss_dssp             EEEETT-EEEEEET--TCCEEE-EECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH---HC----
T ss_pred             ceeEee-eeEEEcC--CCCCCC-cCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHH---HH----
Confidence            355554 3444432  233344 22233456666  9999999   999998313 789999999999996   77    


Q ss_pred             cccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          122 NHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       122 dqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      .+++++|+|||||||||..++ |++||||+
T Consensus        94 ~~~l~~l~G~fa~~i~d~~~~-l~~aRD~~  122 (503)
T 1q15_A           94 ANALALAEGDFCFFIDEPNGE-LTVITESR  122 (503)
T ss_dssp             GGGGGGCCSSEEEEEECTTSC-EEEEECSS
T ss_pred             HHHHHHcCEEEEEEEEeCCCC-EEEEECCC
Confidence            569999999999999999998 99999975

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=99.59  E-value=3.9e-15  Score=134.69  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=66.8

Q ss_pred             CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECCC-CeEE
Q 031334           74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-STLF  145 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~t-~~lf  145 (161)
                      +++++++||+|||+.+||+++   |+. +++||+|||+++|..+.++|+-+.   .+++++|+|+|||+|||... ++||
T Consensus        91 ~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~~~~~~l~  170 (608)
T 2bpl_A           91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLL  170 (608)
T ss_dssp             TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEETTCTTCEE
T ss_pred             CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEecCCCCEEE
Confidence            889999999999999999887   665 889999999999998655573110   16899999999999999998 9999


Q ss_pred             EEeec
Q 031334          146 VASVG  150 (161)
Q Consensus       146 ~ARDr  150 (161)
                      +|||+
T Consensus       171 ~aRd~  175 (608)
T 2bpl_A          171 AARSG  175 (608)
T ss_dssp             EEEEB
T ss_pred             EEECC
Confidence            99997

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*

Probab=99.51  E-value=2.9e-14  Score=125.49  Aligned_cols=74  Identities=19%  Similarity=0.304  Sum_probs=62.0

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC----ccccccccCcceEEEEEECCCCeE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP----PNHVVGHLSGYFAFIVYDKSTSTL  144 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp----adqvv~~L~GmFAFvI~D~~t~~l  144 (161)
                      .+++++++||+|||+.+||+++   |.. +++||+|+|+++|..   ||--.    ..+++++|+|+|||+|||  .++|
T Consensus        94 ~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~---~~~~~~~~a~~~~~~~l~G~fa~~i~d--~~~l  168 (459)
T 1ao0_A           94 NGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKR---SGHFTLKDQIKNSLSMLKGAYAFLIMT--ETEM  168 (459)
T ss_dssp             TCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHT---CCCSSHHHHHHHHHTTCCEEEEEEEEC--SSEE
T ss_pred             CCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hccCCHHHHHHHHHHhhccceEEEEEe--CCEE
Confidence            4679999999999999999987   554 889999999999996   43100    036999999999999999  4899


Q ss_pred             EEEeecc
Q 031334          145 FVASVGL  151 (161)
Q Consensus       145 f~ARDr~  151 (161)
                      +++|||+
T Consensus       169 ~~~RD~~  175 (459)
T 1ao0_A          169 IVALDPN  175 (459)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            9999983

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*

Probab=99.38  E-value=9.4e-13  Score=117.46  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=61.3

Q ss_pred             CCEEEEecceecCHHHHHHHh---C-CC-CCCchHHHHHHHHHHhh-hcCCCC---cc------ccccccCcceEEEEEE
Q 031334           74 DEIFCLFEGALDNLGSLRQQY---G-LA-KSANEVILVIEAYKALR-DRAPYP---PN------HVVGHLSGYFAFIVYD  138 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qy---g-ls-ks~sE~evvieaY~~lR-drGPyp---ad------qvv~~L~GmFAFvI~D  138 (161)
                      +++++++||+|||+.+||+++   | .. +++||+|||+++|..+. ++|+..   .+      +++++|+|+|||++||
T Consensus        94 ~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l~G~fa~v~~~  173 (504)
T 1ecf_A           94 YGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMI  173 (504)
T ss_dssp             SCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred             CCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhcCccceEEEEE
Confidence            459999999999999999886   2 33 88999999999998643 345211   11      5799999999999998


Q ss_pred             CCCCeEEEEeecc
Q 031334          139 KSTSTLFVASVGL  151 (161)
Q Consensus       139 ~~t~~lf~ARDr~  151 (161)
                      .. ++||++||++
T Consensus       174 ~~-~~l~a~RD~~  185 (504)
T 1ecf_A          174 IG-HGMVAFRDPN  185 (504)
T ss_dssp             TT-TEEEEEECTT
T ss_pred             cC-CeEEEEECCC
Confidence            64 4799999983

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}

Probab=99.20  E-value=1.6e-11  Score=102.66  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=60.3

Q ss_pred             CCEEEEecceecCHHHHHHHh---CC------CCCCchHHHHHHHHHHhhhcCC--CCc---cccccccCcc--------
Q 031334           74 DEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALRDRAP--YPP---NHVVGHLSGY--------  131 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qy---gl------sks~sE~evvieaY~~lRdrGP--ypa---dqvv~~L~Gm--------  131 (161)
                      +++.+++||+|||+.+||+++   |.      -+++||+|+|+++|..   +|.  -|.   .+++++|+|+        
T Consensus       107 g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~---~~~~~~~~~al~~~l~~l~G~~~~~g~~~  183 (274)
T 3mdn_A          107 RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALS---EGLEHDPHGALARAIARLEGLSRAHGTTP  183 (274)
T ss_dssp             TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHH---TTTTTCHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHH---hhhcCCHHHHHHHHHHHHHhHHhhcCccc
Confidence            789999999999999999876   31      1688999999999964   331  011   1689999999        


Q ss_pred             ---eEEEEEECCCCeEEEEeeccccc
Q 031334          132 ---FAFIVYDKSTSTLFVASVGLFNF  154 (161)
Q Consensus       132 ---FAFvI~D~~t~~lf~ARDr~~~~  154 (161)
                         |+|+++|.  ++|+++||+-+.+
T Consensus       184 ~~a~~~~~~d~--~~l~a~Rd~~~G~  207 (274)
T 3mdn_A          184 HMRLSAAFSDG--QTLYAARYSSDHI  207 (274)
T ss_dssp             SEEEEEEEECS--SCEEEEEEESSSC
T ss_pred             CceEEEEEEcC--CEEEEEECCCCCC
Confidence               99999985  6899999983333

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1

Probab=97.56  E-value=3.2e-05  Score=63.56  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=53.8

Q ss_pred             CCEEEEecceecCHHHHHHHhCCCCCCchHHHHHHHHHH-hhhcCCC-C-c---cccccccC------cceEEEEEECCC
Q 031334           74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKA-LRDRAPY-P-P---NHVVGHLS------GYFAFIVYDKST  141 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qyglsks~sE~evvieaY~~-lRdrGPy-p-a---dqvv~~L~------GmFAFvI~D~~t  141 (161)
                      +++.++.||.|.|+.+ |++.+.-.++||+|+|.+.... +++.++- | .   .+.++++.      |.|+|++-|.  
T Consensus       101 ~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~G~~n~~l~~g--  177 (257)
T 1te5_A          101 RYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDG--  177 (257)
T ss_dssp             EEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTTBCCEEEEESS--
T ss_pred             CeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcCcEEEEEEcC--
Confidence            5799999999999999 8764434888899999888764 3332211 2 1   13555555      9999999885  


Q ss_pred             CeEEEEee
Q 031334          142 STLFVASV  149 (161)
Q Consensus       142 ~~lf~ARD  149 (161)
                      .+|++.||
T Consensus       178 ~~l~a~rd  185 (257)
T 1te5_A          178 DWLFTFCS  185 (257)
T ss_dssp             SCEEEECS
T ss_pred             CEEEEEEc
Confidence            78999999

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=96.27  E-value=0.0068  Score=61.47  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=51.9

Q ss_pred             EEecceecCHHHHHHHh------------C--------C-CCCCchHHHHHHHHHHhhhcCCCCcc--------------
Q 031334           78 CLFEGALDNLGSLRQQY------------G--------L-AKSANEVILVIEAYKALRDRAPYPPN--------------  122 (161)
Q Consensus        78 cvFnGeIyN~~eLr~qy------------g--------l-sks~sE~evvieaY~~lRdrGPypad--------------  122 (161)
                      ++.||||.|+..+|+.+            |        . ..+.||+|++.++...|...| .+..              
T Consensus       228 laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g-~~l~~A~~~liPeaw~~~  306 (1479)
T 1ea0_A          228 LAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAG-RTAPMVKMMLVPQALTSS  306 (1479)
T ss_dssp             EEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTT-CCHHHHHHHHSCCCCC--
T ss_pred             EEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcC-CCHHHHHHHhCchhhccc
Confidence            89999999999999542            2        2 478899999955544433334 2221              


Q ss_pred             ---------------ccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          123 ---------------HVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       123 ---------------qvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                                     .+.+.++|-||+++-|.  +.+.++|||.
T Consensus       307 ~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~Drn  348 (1479)
T 1ea0_A          307 QTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRN  348 (1479)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTT
T ss_pred             ccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCC
Confidence                           23679999999999665  8999999984

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=95.74  E-value=0.021  Score=58.09  Aligned_cols=71  Identities=10%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             EEecceecCHHHHH------HH------h--------C--CCCCCchHHHHHHHHHHhhhcCCCCc--------------
Q 031334           78 CLFEGALDNLGSLR------QQ------Y--------G--LAKSANEVILVIEAYKALRDRAPYPP--------------  121 (161)
Q Consensus        78 cvFnGeIyN~~eLr------~q------y--------g--lsks~sE~evvieaY~~lRdrGPypa--------------  121 (161)
                      ++.||||.|+..+|      ++      +        +  ...+.||+|++.++...|-..| .+.              
T Consensus       224 LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g-~~l~~A~~~liPeaw~~  302 (1520)
T 1ofd_A          224 LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTG-RSPLEAAMILVPEAYKN  302 (1520)
T ss_dssp             EEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTT-CCHHHHHHHHSCCCCTT
T ss_pred             eEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcC-CCHHHHHHHhCcchhcc
Confidence            89999999999998      32      1        3  2478889999976555443334 111              


Q ss_pred             -----------------cccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          122 -----------------NHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       122 -----------------dqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                                       ..+.+.++|-||+++-|.  +.+.++|||.
T Consensus       303 ~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~Drn  347 (1520)
T 1ofd_A          303 QPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRN  347 (1520)
T ss_dssp             CGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTT
T ss_pred             cccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCC
Confidence                             124688999999999886  8999999974

>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B

Probab=80.32  E-value=1.9  Score=25.65  Aligned_cols=23  Identities=26%  Similarity=0.719  Sum_probs=18.2

Q ss_pred             ccCcceEEEEEECCCCe-EEEEee
Q 031334          127 HLSGYFAFIVYDKSTST-LFVASV  149 (161)
Q Consensus       127 ~L~GmFAFvI~D~~t~~-lf~ARD  149 (161)
                      .++--|-|+|||+.|++ ||+.|-
T Consensus         7 ~~drPFlf~I~~~~t~~iLF~G~v   30 (36)
T 4afx_B            7 KIDRPFHFMIYEETSGMLLFLGRV   30 (36)
T ss_dssp             ECCSCEEEEEEETTTTEEEEEEEE
T ss_pred             EeeCCEEEEEEECCCCcEEEEEEe
Confidence            35678999999999885 677764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1q15a2	204	beta-Lactam synthetase {Pectobacterium carotovorum	99.85
d1jgta2	206	beta-Lactam synthetase {Streptomyces clavuligerus	99.83
d1ct9a2	192	Asparagine synthetase B, N-terminal domain {Escher	99.82
d1gph12	234	Glutamine PRPP amidotransferase, N-terminal domain	99.42
d1xffa_	238	Glucosamine 6-phosphate synthase, N-terminal domai	99.31
d1ecfa2	249	Glutamine PRPP amidotransferase, N-terminal domain	98.89
d1te5a_	253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	95.19

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.85  E-value=4.6e-22  Score=160.70  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             eeeCCEEEEecceecCHHHHHHHhC---CC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEE
Q 031334           71 AVKDEIFCLFEGALDNLGSLRQQYG---LA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (161)
Q Consensus        71 ~~~d~i~cvFnGeIyN~~eLr~qyg---ls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~  146 (161)
                      +-.++++++|||||||+.+||++++   .. ++.|||||++++|+.   ||    .+++++|+|||||+|||+ .+++++
T Consensus        45 ~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvll~~~~~---~G----~~~l~~l~G~Faf~i~~~-~~~l~l  116 (204)
T d1q15a2          45 CEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR---LG----ANALALAEGDFCFFIDEP-NGELTV  116 (204)
T ss_dssp             EECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH---HC----GGGGGGCCSSEEEEEECT-TSCEEE
T ss_pred             ccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHHHHHHHH---HH----HHHHHhhCCceEEEEecC-CceEEE
Confidence            5678999999999999999999873   33 789999999999996   88    779999999999999775 578999


Q ss_pred             Eeecc
Q 031334          147 ASVGL  151 (161)
Q Consensus       147 ARDr~  151 (161)
                      ||||+
T Consensus       117 ~RD~~  121 (204)
T d1q15a2         117 ITESR  121 (204)
T ss_dssp             EECSS
T ss_pred             EECCC
Confidence            99997

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.83  E-value=5.6e-21  Score=153.69  Aligned_cols=69  Identities=16%  Similarity=0.189  Sum_probs=63.8

Q ss_pred             CCEEEEecceecCHHHHHHHhCCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031334           74 DEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qygls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      .+.++||||||||+.|||+++|+. ++.+|+|||+++|+.   ||    .+++++|+|||||+|||+  +++++||||+
T Consensus        66 ~~~~~v~NGeIyN~~eL~~~lg~~~~s~sDtEvil~l~~~---~G----~~~l~~l~G~Fa~vi~d~--~~l~laRD~~  135 (206)
T d1jgta2          66 APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER---YD----LHAFRLVNGRFATVVRTG--DRVLLATDHA  135 (206)
T ss_dssp             SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH---HG----GGGGGTCCEEEEEEEEET--TEEEEEECTT
T ss_pred             CCEEEEEEEEecCHHHHHHHhCCCCCCCCchHHHHHHhhh---hC----HHHHHHHHhhhheeeeec--ceEEEEEecc
Confidence            568999999999999999999987 889999999999996   77    679999999999999996  5899999986

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=5.4e-20  Score=144.29  Aligned_cols=103  Identities=19%  Similarity=0.345  Sum_probs=80.3

Q ss_pred             CCcEEEEeCCCeEEEEecCCC---CCccccceeeeCCEEEEecceecCHHHHHHHhCCC---CCCchHHHHHHHHHHhhh
Q 031334           42 SSAVSVQVGDNVTLAYTHQNE---SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLA---KSANEVILVIEAYKALRD  115 (161)
Q Consensus        42 ~~a~s~~~g~~~~lAys~~~~---~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qygls---ks~sE~evvieaY~~lRd  115 (161)
                      |++..+...+...|..+.-..   +.-.+-.+...++++++|||||||+.+|++++...   ++++|+|+++++|+.   
T Consensus        32 pD~~~~~~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~sDtevll~~~~~---  108 (192)
T d1ct9a2          32 PDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQE---  108 (192)
T ss_dssp             BTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHH---
T ss_pred             CCCCCeEEeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchhHHHHHHHhcCcccCCCCcHHHHHHHhhh---
Confidence            577777666666565543221   11112234566889999999999999999998432   678999999999995   


Q ss_pred             cCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031334          116 RAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       116 rGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      ||    .+++++|+|||||+|||.++++|++||||+
T Consensus       109 ~g----~~~~~~l~G~fa~~i~d~~~~~l~~aRD~~  140 (192)
T d1ct9a2         109 KG----PEFLDDLQGMFAFALYDSEKDAYLIGRDHL  140 (192)
T ss_dssp             HT----TTTGGGCCEEEEEEEEETTTTEEEEEECTT
T ss_pred             cc----hhhhhhhhhheEEEEEecCcceeEEEEccc
Confidence            77    569999999999999999999999999985

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.42  E-value=1.5e-13  Score=108.22  Aligned_cols=74  Identities=19%  Similarity=0.311  Sum_probs=61.7

Q ss_pred             eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc----cccccccCcceEEEEEECCCCeE
Q 031334           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP----NHVVGHLSGYFAFIVYDKSTSTL  144 (161)
Q Consensus        73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa----dqvv~~L~GmFAFvI~D~~t~~l  144 (161)
                      .+++++++||+|||+.+||+++   |.. .+++|+|+++..|+.   .+....    .+++++|+|||||+++|+  +.+
T Consensus        94 ~~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~~~~~---~~~~~~~~ai~~~~~~l~G~~a~~i~~~--~~~  168 (234)
T d1gph12          94 NGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKR---SGHFTLKDQIKNSLSMLKGAYAFLIMTE--TEM  168 (234)
T ss_dssp             TCCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHHHHHT---CCCSSHHHHHHHHHTTCCEEEEEEEECS--SCE
T ss_pred             cceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHHHHHH---HhhhhHHHHHHHHHHhcCCceEEEEeec--Cce
Confidence            4689999999999999999886   555 889999999999985   332211    368999999999999986  679


Q ss_pred             EEEeecc
Q 031334          145 FVASVGL  151 (161)
Q Consensus       145 f~ARDr~  151 (161)
                      +++|||.
T Consensus       169 ~~~rD~~  175 (234)
T d1gph12         169 IVALDPN  175 (234)
T ss_dssp             EEEECTT
T ss_pred             eEEEcCC
Confidence            9999986

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=6.2e-12  Score=99.41  Aligned_cols=79  Identities=19%  Similarity=0.321  Sum_probs=63.2

Q ss_pred             eeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECCC-Ce
Q 031334           72 VKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-ST  143 (161)
Q Consensus        72 ~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~t-~~  143 (161)
                      ..+++++++||+|||+.+||++|   |.. ++.+|||++++.+......+.-..   .+++++|+|+|||++.|... ..
T Consensus        89 ~~~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l~~~~~~~~~~~~e~i~~~~~~l~G~~a~~i~~~~~~~~  168 (238)
T d1xffa_          89 VSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDT  168 (238)
T ss_dssp             EETTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTC
T ss_pred             cCCcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhhhhHhhhcCCCHHHHHHHHHHHccCchhhhhhhccCCCE
Confidence            45789999999999999999887   555 788899999999876544432111   36899999999999999765 67


Q ss_pred             EEEEeec
Q 031334          144 LFVASVG  150 (161)
Q Consensus       144 lf~ARDr  150 (161)
                      ++.+||.
T Consensus       169 i~~~~~~  175 (238)
T d1xffa_         169 LLAARSG  175 (238)
T ss_dssp             EEEEEEB
T ss_pred             EEEECCC
Confidence            8888873

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=4e-09  Score=84.12  Aligned_cols=86  Identities=10%  Similarity=0.031  Sum_probs=63.2

Q ss_pred             ccccceeeeCCEEEEecceecCHHHHHHH----hCCC-CCCchHHHHHHHHHHhhhcCCCC----------ccccccccC
Q 031334           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQ----YGLA-KSANEVILVIEAYKALRDRAPYP----------PNHVVGHLS  129 (161)
Q Consensus        65 l~pr~F~~~d~i~cvFnGeIyN~~eLr~q----ygls-ks~sE~evvieaY~~lRdrGPyp----------adqvv~~L~  129 (161)
                      -||-.....+++.+++||+|+||.+|+++    .|.. ++.+|+||+++.+....+.+...          ...++++|+
T Consensus        85 ahP~~~~~~~~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~l~  164 (249)
T d1ecfa2          85 AQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIR  164 (249)
T ss_dssp             CSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCC
T ss_pred             ccccccCCCCcEEEEeeeeeccHHHHHHHHHHhcCccccccchHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhcC
Confidence            35622223357999999999999999654    3665 88899999999887665554321          134678899


Q ss_pred             cceEEEEEECCCCeEEEEeecc
Q 031334          130 GYFAFIVYDKSTSTLFVASVGL  151 (161)
Q Consensus       130 GmFAFvI~D~~t~~lf~ARDr~  151 (161)
                      |.|++++.. ....++++|||.
T Consensus       165 Gs~~~~~~~-~~~~~~~~rD~~  185 (249)
T d1ecfa2         165 GAYACVAMI-IGHGMVAFRDPN  185 (249)
T ss_dssp             EEEEEEEEE-TTTEEEEEECTT
T ss_pred             CCceEEEEe-cCCCceEEEecC
Confidence            999988775 445799999985

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.19  E-value=0.0038  Score=47.80  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=43.6

Q ss_pred             CCEEEEecceecCHHHHHHHhCCCCCCchHHHHHHHHH-HhhhcCCCC--cccc---ccc----c--CcceEEEEEECCC
Q 031334           74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYK-ALRDRAPYP--PNHV---VGH----L--SGYFAFIVYDKST  141 (161)
Q Consensus        74 d~i~cvFnGeIyN~~eLr~qyglsks~sE~evvieaY~-~lRdrGPyp--adqv---v~~----L--~GmFAFvI~D~~t  141 (161)
                      +++.++.||.|.|+.+|+..+. .++++|+|++..... .|++..+.+  .+.+   +++    +  .+.+.|+++|-. 
T Consensus       100 ~~~~f~HNG~i~n~~~l~~~~~-~~g~tDse~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~dg~-  177 (253)
T d1te5a_         100 RYWTFAHNGQLADFQPKPGFYR-PVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGD-  177 (253)
T ss_dssp             EEEEEEEESCBSSCCCCCCSSC-CSSCCHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTTBCCEEEEESSS-
T ss_pred             CCEEEEEeeeEechhhhhhhhc-ccCCCccchhHHHHHHHHHhccccCCchHHHHHHHHHHHHhhccceEEEEEccCCC-
Confidence            5788899999999999997653 245566666544333 445554432  2222   222    2  468889898864 


Q ss_pred             CeEEEE
Q 031334          142 STLFVA  147 (161)
Q Consensus       142 ~~lf~A  147 (161)
                       .+++-
T Consensus       178 -~l~a~  182 (253)
T d1te5a_         178 -WLFTF  182 (253)
T ss_dssp             -CEEEE
T ss_pred             -EEEEE
Confidence             34443