BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031335
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FKR|A Chain A, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase Complex
           With Pyruvate
 pdb|3FKR|B Chain B, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase Complex
           With Pyruvate
          Length = 309

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 71  NCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPD 115
           N L EL+R GG ++  P+  +   T L+DL A    +     FPD
Sbjct: 179 NKLRELIRLGGDAIEGPWDGEEAITLLADLHAGATGAMTGGGFPD 223


>pdb|3FKK|A Chain A, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase
 pdb|3FKK|B Chain B, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase
          Length = 309

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 71  NCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPD 115
           N L EL+R GG ++  P+  +   T L+DL A    +     FPD
Sbjct: 179 NKLRELIRLGGDAIEGPWDGEEAITLLADLHAGATGAMTGGGFPD 223


>pdb|2UZH|A Chain A, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
           Cyclodiphosphate Synthase (Ispf)
 pdb|2UZH|B Chain B, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
           Cyclodiphosphate Synthase (Ispf)
 pdb|2UZH|C Chain C, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
           Cyclodiphosphate Synthase (Ispf)
          Length = 165

 Score = 27.7 bits (60), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 92  SLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKS 124
            L T++  +EA +P   LCLEF D   GC   S
Sbjct: 9   GLGTDVHPIEAGRPCRLLCLEFDDAD-GCAGHS 40


>pdb|3F31|A Chain A, Crystal Structure Of The N-Terminal Region Of
           Alphaii-Spectr Tetramerization Domain
 pdb|3F31|B Chain B, Crystal Structure Of The N-Terminal Region Of
           Alphaii-Spectr Tetramerization Domain
          Length = 149

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 61  TNVTELDKEWNCLIELLRSGGLSLME 86
           T + EL ++W  L+E +R  G+ L++
Sbjct: 124 TRLMELHRQWELLLEKMREKGIKLLQ 149


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,018,310
Number of Sequences: 62578
Number of extensions: 123214
Number of successful extensions: 288
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)