BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031335
         (161 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O28033|Y2251_ARCFU Protein AF_2251 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
           VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2251
           PE=3 SV=1
          Length = 229

 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 62/123 (50%), Gaps = 10/123 (8%)

Query: 26  ISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLM 85
           + +++ +PEG+ E++ +D    P    +NV ++      E++  +  ++E    G     
Sbjct: 109 VRKISSVPEGS-EIVWNDVGAAPAFIVENVAVMPGVP-AEMENTFEKILERFEKG----- 161

Query: 86  EPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAI 145
             Y  + +  N  +++    L+++  + PD+ IG Y K   G +++ F G+D+ +++ A+
Sbjct: 162 -EYHEEVVKVNGFEVKIVDKLNQVVRDNPDVEIGSYPKP--GYVMVKFSGRDKEKVKKAV 218

Query: 146 ESL 148
           +  
Sbjct: 219 KQF 221


>sp|Q97ZG1|GATA_SULSO Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfolobus
           solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
           P2) GN=gatA-2 PE=3 SV=1
          Length = 478

 Score = 34.3 bits (77), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 2   FIEFCNGNYQQPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTAT 61
           + ++  GN+++ Y     E FG+++ +  LL        ++++  L  +K +N+I     
Sbjct: 321 YSKYMEGNWREVYAKNRGEAFGMEVKRRILLGSFILSAGYYEEFYLKALKVRNLI---KK 377

Query: 62  NVTELDKEWNCLIE-----LLRSGGLSLMEPYT--SKSLTTNLSDLEAAQPLSKLCLEFP 114
           N+ EL K+++ L+      L    G  + +P    +  L T +++L A   LS     + 
Sbjct: 378 NLDELFKKYDILLSPTMPILPPKIGEVINDPVRMYAMDLNTVIANLAAIPALSMPVGFYS 437

Query: 115 DLHIG 119
           DL IG
Sbjct: 438 DLPIG 442


>sp|B2U9U3|RLMD_RALPJ 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Ralstonia
           pickettii (strain 12J) GN=rlmD PE=3 SV=1
          Length = 450

 Score = 31.2 bits (69), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 5   FCN-GNYQQPYNLGSQETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNV 63
           FC  GN+  P    ++E  GI+ S+ AL         H+         C+N+  ++A +V
Sbjct: 300 FCGIGNFTLPMATRAREVMGIEGSE-ALTTRALANAQHNGLHTKTSFACRNLFEVSADDV 358

Query: 64  TELDKEWNCLIELLRSGGLSL 84
             L K    LI+  R G L++
Sbjct: 359 AALGKFDRWLIDPPREGALAV 379


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,078,232
Number of Sequences: 539616
Number of extensions: 2024603
Number of successful extensions: 4901
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4899
Number of HSP's gapped (non-prelim): 6
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)