Query 031335
Match_columns 161
No_of_seqs 131 out of 1016
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kbq_A Protein TA0487; structu 99.7 2.7E-17 9.1E-22 126.7 5.5 57 19-78 108-169 (172)
2 3iwt_A 178AA long hypothetical 95.9 0.0028 9.4E-08 47.7 1.9 47 26-78 122-170 (178)
3 1uuy_A CNX1, molybdopterin bio 94.3 0.01 3.4E-07 44.4 0.7 50 27-79 104-157 (167)
4 2pbq_A Molybdenum cofactor bio 90.6 0.27 9.1E-06 36.9 4.2 34 42-79 118-157 (178)
5 1y5e_A Molybdenum cofactor bio 90.0 0.26 9E-06 36.6 3.7 42 33-79 117-161 (169)
6 2is8_A Molybdopterin biosynthe 89.9 0.21 7.1E-06 36.9 3.0 23 54-78 124-147 (164)
7 2g2c_A Putative molybdenum cof 86.4 0.3 1E-05 36.2 1.9 23 54-78 135-158 (167)
8 1mkz_A Molybdenum cofactor bio 82.0 0.77 2.6E-05 34.1 2.5 24 54-79 132-157 (172)
9 1jlj_A Gephyrin; globular alph 79.1 0.86 2.9E-05 34.5 1.9 28 49-78 134-163 (189)
10 1qys_A TOP7; alpha-beta, novel 76.8 4.1 0.00014 27.1 4.5 51 95-153 22-72 (106)
11 1wjw_A Phosphoacetylglucosamin 76.3 13 0.00045 25.5 7.3 51 102-152 43-93 (112)
12 2pa8_L DNA-directed RNA polyme 69.6 22 0.00074 23.7 7.3 53 100-152 22-80 (92)
13 1twf_K B13.6, DNA-directed RNA 62.2 37 0.0013 23.8 7.2 53 100-152 40-98 (120)
14 2jsx_A Protein NAPD; TAT, proo 58.8 29 0.001 23.1 6.0 37 112-150 28-65 (95)
15 4hhu_A OR280; engineered prote 55.1 54 0.0019 23.4 8.5 54 95-149 48-105 (170)
16 3rfq_A Pterin-4-alpha-carbinol 52.0 11 0.00038 28.3 3.2 23 54-78 152-175 (185)
17 1xpp_A TA1416, DNA-directed RN 50.2 60 0.0021 22.5 6.6 53 100-152 32-89 (115)
18 1rwu_A Hypothetical UPF0250 pr 50.1 30 0.001 23.8 5.0 56 95-150 42-101 (109)
19 2ctj_A Vigilin; K homology typ 49.1 19 0.00066 23.9 3.7 46 106-153 39-84 (95)
20 1di6_A MOGA, molybdenum cofact 47.6 5 0.00017 30.5 0.6 26 44-72 118-145 (195)
21 2ctf_A Vigilin; K homology typ 45.8 41 0.0014 22.5 5.0 42 106-152 49-90 (102)
22 2w7v_A General secretion pathw 44.9 50 0.0017 22.2 5.3 51 100-150 8-62 (95)
23 3h0g_K DNA-directed RNA polyme 44.2 23 0.0008 25.0 3.7 53 100-152 39-97 (123)
24 2a10_A CCMK4, carbon dioxide c 43.9 55 0.0019 23.1 5.6 39 114-153 29-67 (125)
25 3cim_A Carbon dioxide-concentr 43.7 58 0.002 21.9 5.5 39 114-153 27-65 (99)
26 2a1b_A CCMK2, carbon dioxide c 40.7 76 0.0026 22.1 5.9 39 114-153 27-65 (116)
27 2fts_A Gephyrin; gephyrin, neu 40.7 19 0.00064 30.4 3.2 24 54-79 303-328 (419)
28 3le1_A Phosphotransferase syst 38.3 36 0.0012 22.2 3.7 26 128-153 60-86 (88)
29 1wu2_A MOEA protein, molybdopt 35.8 28 0.00096 29.1 3.5 39 27-79 277-317 (396)
30 2f7l_A 455AA long hypothetical 35.5 1.9E+02 0.0066 24.0 9.7 36 118-153 418-453 (455)
31 2dka_A Phosphoacetylglucosamin 35.2 1E+02 0.0035 26.6 7.1 51 102-152 493-543 (544)
32 2ewh_A Major carboxysome shell 35.0 1E+02 0.0035 20.7 5.9 38 114-152 31-68 (98)
33 3pdk_A Phosphoglucosamine muta 33.9 1.3E+02 0.0043 25.5 7.4 51 103-153 412-463 (469)
34 1ghh_A DINI, DNA-damage-induci 33.6 99 0.0034 20.1 6.2 52 96-150 12-69 (81)
35 1uz5_A MOEA protein, 402AA lon 33.0 30 0.001 29.0 3.2 24 54-79 296-321 (402)
36 2gjh_A Designed protein; oblig 32.7 45 0.0015 20.0 3.1 26 128-153 3-28 (62)
37 3bn4_A Carbon dioxide-concentr 31.8 1.3E+02 0.0045 21.0 6.0 40 114-154 27-66 (122)
38 3pzy_A MOG; ssgcid, seattle st 31.6 24 0.00083 25.7 2.2 22 54-77 128-150 (164)
39 1y51_A Phosphocarrier protein 31.3 67 0.0023 20.7 4.2 15 128-142 60-74 (88)
40 1kkl_H Phosphocarrier protein 30.6 68 0.0023 21.5 4.2 17 128-144 72-88 (100)
41 3n79_A PDUT; FES cluster, BMC 30.4 1.2E+02 0.0041 22.8 6.0 41 114-155 27-67 (192)
42 1k1g_A SF1-BO isoform; splicin 30.3 1.4E+02 0.0048 20.9 7.2 27 128-154 73-99 (131)
43 3i3w_A Phosphoglucosamine muta 28.6 42 0.0014 28.3 3.4 53 102-154 387-440 (443)
44 4axj_A EUTM, ethanolamine carb 28.2 1.3E+02 0.0044 20.5 5.2 36 114-150 30-65 (104)
45 2jvf_A De novo protein M7; tet 28.1 73 0.0025 20.6 3.7 50 93-151 23-72 (96)
46 3nwg_A Microcompartments prote 27.5 1.5E+02 0.0052 21.9 6.1 42 114-156 27-68 (182)
47 3ngk_A Propanediol utilization 26.9 1.4E+02 0.0048 20.2 5.2 35 114-149 36-70 (102)
48 3r2c_J Protein NUSE, 30S ribos 26.8 89 0.003 20.3 4.1 26 127-152 4-29 (83)
49 1g8l_A Molybdopterin biosynthe 25.8 36 0.0012 28.6 2.5 24 54-79 293-318 (411)
50 1tig_A IF3-C, translation init 25.8 1.4E+02 0.0048 19.8 5.0 59 89-155 6-69 (94)
51 3ccd_A Phosphocarrier protein 25.1 78 0.0027 20.3 3.6 14 128-141 60-73 (85)
52 3mwb_A Prephenate dehydratase; 25.1 1.7E+02 0.0057 23.7 6.3 55 96-151 254-309 (313)
53 1ssz_A Pulmonary surfactant-as 24.9 14 0.00049 19.8 -0.1 13 28-41 11-23 (34)
54 3d3c_J 30S ribosomal protein S 24.4 1.2E+02 0.0042 19.7 4.5 27 127-153 9-35 (87)
55 4hjh_A Phosphomannomutase; str 24.2 1.2E+02 0.004 25.7 5.4 33 120-152 439-471 (481)
56 1sph_A Histidine-containing ph 24.1 96 0.0033 20.0 3.9 15 128-142 60-74 (88)
57 1p5d_X PMM, phosphomannomutase 23.9 1.2E+02 0.0041 25.4 5.4 34 119-152 419-452 (463)
58 1i96_V Translation initiation 23.8 1.6E+02 0.0055 19.3 5.6 53 94-154 8-63 (89)
59 3mpy_A Ethanolamine utilizatio 23.6 1.8E+02 0.006 19.7 5.7 36 114-150 26-61 (103)
60 3uw2_A Phosphoglucomutase/phos 22.8 1.3E+02 0.0043 25.7 5.4 32 121-152 443-474 (485)
61 2pjk_A 178AA long hypothetical 22.5 54 0.0018 24.1 2.7 24 54-79 146-171 (178)
62 1ka5_A Phosphocarrier protein 22.3 1E+02 0.0035 19.9 3.8 17 128-144 60-76 (88)
63 1pch_A Phosphocarrier protein; 21.9 1.1E+02 0.0039 19.7 3.9 17 128-144 59-75 (88)
64 1ptf_A Histidine-containing ph 21.6 1.2E+02 0.004 19.6 3.9 15 128-142 60-74 (88)
65 2yqr_A KIAA0907 protein; struc 21.4 1E+02 0.0034 21.4 3.7 26 128-153 73-98 (119)
66 2dwf_A Pulmonary surfactant-as 20.8 20 0.00067 19.6 -0.1 13 28-41 11-23 (34)
67 3ced_A Methionine import ATP-b 20.5 1.7E+02 0.0059 19.0 4.7 52 100-151 31-88 (98)
No 1
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.68 E-value=2.7e-17 Score=126.70 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=51.4
Q ss_pred CCCCCHhhhcccccCCCCceeeeCCCCcccEEEec----eEEEecCCCCch-hHHHHHHHHHHHH
Q 031335 19 QETFGIQISQMALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNCLIELLR 78 (161)
Q Consensus 19 ~~~~~~~~~rqA~vPega~~~l~N~~GtAPG~~i~----~v~~LPG~~vP~-m~~m~~~v~p~L~ 78 (161)
+.+++++|+|||++|+|| ++|+|++|+|||++++ +||+||| ||+ |++||+.+.|.|.
T Consensus 108 ~~~~~~~~~k~A~~P~ga-~~l~N~~g~apG~~~~~~~~~v~~lPG--vP~e~~~m~~~~~~~~~ 169 (172)
T 3kbq_A 108 QADLTPQRLKMAKIPPSC-RPIENPVGTAPGLICAVGGKKVIILPG--VPKEMEALLKAMEKDII 169 (172)
T ss_dssp ---CCHHHHGGGEECTTE-EEECCSSSSSCEEEEEETTEEEEEECS--SHHHHHHHHHHTHHHHC
T ss_pred CCCCChHHHhhccCCCCC-EECcCCCCcCCeEEEEECCeEEEEeCC--CHHHHHHHHHHHHhhcC
Confidence 568999999999999999 9999999999999996 6999999 999 9999999999873
No 2
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=95.93 E-value=0.0028 Score=47.69 Aligned_cols=47 Identities=6% Similarity=-0.003 Sum_probs=32.6
Q ss_pred hhcccccCCCCceeeeCCCCcccEEEeceEEEecCCCCch-hHHHHH-HHHHHHH
Q 031335 26 ISQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTE-LDKEWN-CLIELLR 78 (161)
Q Consensus 26 ~~rqA~vPega~~~l~N~~GtAPG~~i~~v~~LPG~~vP~-m~~m~~-~v~p~L~ 78 (161)
..|++..+.+| .+..|..|++.|- .||.||| +|. |+.||+ .++|.|.
T Consensus 122 ~~~~~~~~~~a-~~~~~~~G~~~~~---~i~~LPG--~P~~~~~~~~~~v~P~L~ 170 (178)
T 3iwt_A 122 SFNDPEVKAAA-YLTKASAGIIGKK---IVYLLPG--SPDAVKLALKELILPEVG 170 (178)
T ss_dssp HHTSTTTGGGG-GGCCCEEEEETTE---EEEEECS--CHHHHHHHHHHTHHHHHH
T ss_pred Hhccccccccc-cccccceeeECCE---EEEECCC--CHHHHHHHHHHHHHHHHH
Confidence 34566667777 5555544544332 3899999 999 999997 5788874
No 3
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=94.35 E-value=0.01 Score=44.35 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=36.3
Q ss_pred hcccccCCCCceeeeCCCC--cccEEEec-eEEEecCCCCch-hHHHHHHHHHHHHh
Q 031335 27 SQMALLPEGTTELLHHDKL--LLPLIKCQ-NVIILTATNVTE-LDKEWNCLIELLRS 79 (161)
Q Consensus 27 ~rqA~vPega~~~l~N~~G--tAPG~~i~-~v~~LPG~~vP~-m~~m~~~v~p~L~~ 79 (161)
.++++++.|. .+.+|..+ +++|+.=+ -||.||| .|. +..+|+.++|.|+.
T Consensus 104 ~~~~~~~~g~-~~~Pg~~~sr~~~G~~~~~~v~~LPG--~P~s~~~~~~~~~P~L~~ 157 (167)
T 1uuy_A 104 LLFVMMQESL-KITPFAMLARSAAGIRGSTLIINMPG--NPNAVAECMEALLPALKH 157 (167)
T ss_dssp HHHHHHHHHH-HHCGGGGGCCCCEEEETTEEEEEECS--STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCCCCcccceeEEEECCEEEEECCC--CHHHHHHHHHHHHHHHHH
Confidence 3455677777 77776654 68887322 3899999 998 99999876787753
No 4
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=90.60 E-value=0.27 Score=36.92 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=26.3
Q ss_pred CCCCcccEEEec--eEEEecCCCCch-hHHHHHHH---HHHHHh
Q 031335 42 HDKLLLPLIKCQ--NVIILTATNVTE-LDKEWNCL---IELLRS 79 (161)
Q Consensus 42 N~~GtAPG~~i~--~v~~LPG~~vP~-m~~m~~~v---~p~L~~ 79 (161)
++.|+| |+ .. .||.||| .|. ++.||+.+ +|+|..
T Consensus 118 lsrg~a-g~-~~~~~v~~LPG--~P~~~~~~~~~~~~v~p~l~~ 157 (178)
T 2pbq_A 118 LSRQTA-GI-RGSCLIVNLPG--KPQSIKVCLDAVMPAIPYCID 157 (178)
T ss_dssp GCCCCE-EE-ETTEEEEEECS--SHHHHHHHHHHHGGGHHHHHH
T ss_pred ccccee-ee-ECCEEEEECCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 356777 66 34 4999999 999 99999864 888865
No 5
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=89.96 E-value=0.26 Score=36.55 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=29.4
Q ss_pred CCCCceeeeCCCCcccEEEec-eEEEecCCCCch-hHHHHH-HHHHHHHh
Q 031335 33 PEGTTELLHHDKLLLPLIKCQ-NVIILTATNVTE-LDKEWN-CLIELLRS 79 (161)
Q Consensus 33 Pega~~~l~N~~GtAPG~~i~-~v~~LPG~~vP~-m~~m~~-~v~p~L~~ 79 (161)
..|. ..+ +..++| |+.-+ .||.||| .|. ++.||+ .+.|+|+.
T Consensus 117 ~pG~-~~~-~~r~~a-G~~~~~~v~~LPG--~P~~~~~~~~~~v~p~L~~ 161 (169)
T 1y5e_A 117 DIGS-SAM-LSRAIG-GTIGRKVVFSMPG--SSGAVRLAMNKLILPELGH 161 (169)
T ss_dssp SSGG-GGG-GCCCEE-EEETTEEEEEECS--SHHHHHHHHHHTHHHHHHH
T ss_pred CCCc-cee-ccccee-EEECCEEEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 3455 333 455666 76432 4999999 999 999998 57888753
No 6
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=89.86 E-value=0.21 Score=36.94 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=19.3
Q ss_pred eEEEecCCCCch-hHHHHHHHHHHHH
Q 031335 54 NVIILTATNVTE-LDKEWNCLIELLR 78 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~~v~p~L~ 78 (161)
.||.||| .|. +..||+.++|+|+
T Consensus 124 ~v~~LPG--~P~~~~~~~~~v~p~l~ 147 (164)
T 2is8_A 124 LILNLPG--SPKGARESLEAVLPVLP 147 (164)
T ss_dssp EEEEECS--SHHHHHHHHHHHGGGHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHH
Confidence 4999999 998 9999987777664
No 7
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=86.38 E-value=0.3 Score=36.15 Aligned_cols=23 Identities=4% Similarity=0.312 Sum_probs=19.5
Q ss_pred eEEEecCCCCch-hHHHHHHHHHHHH
Q 031335 54 NVIILTATNVTE-LDKEWNCLIELLR 78 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~~v~p~L~ 78 (161)
.||.||| .|. ++.||+.+.|.|+
T Consensus 135 ~v~~LPG--~P~~~~~~~~~v~P~L~ 158 (167)
T 2g2c_A 135 LIVNAPS--SSGGITDTWAVISPVIP 158 (167)
T ss_dssp EEEEECS--SHHHHHHHHHHHGGGHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHH
Confidence 4899999 999 9999996677774
No 8
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=81.97 E-value=0.77 Score=34.15 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEecCCCCch-hHHHHHH-HHHHHHh
Q 031335 54 NVIILTATNVTE-LDKEWNC-LIELLRS 79 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~~-v~p~L~~ 79 (161)
.||.||| .|. ++.||+. +.|+|+.
T Consensus 132 ~v~~LPG--~P~~~~~~~~~~v~p~L~~ 157 (172)
T 1mkz_A 132 LILAMPG--STKACRTAWENIIAPQLDA 157 (172)
T ss_dssp EEEEECS--SHHHHHHHHHHTHHHHHCT
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHHhh
Confidence 4899999 999 9999985 7899864
No 9
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=79.10 E-value=0.86 Score=34.54 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=21.0
Q ss_pred EEEec-eEEEecCCCCch-hHHHHHHHHHHHH
Q 031335 49 LIKCQ-NVIILTATNVTE-LDKEWNCLIELLR 78 (161)
Q Consensus 49 G~~i~-~v~~LPG~~vP~-m~~m~~~v~p~L~ 78 (161)
|+.=+ -|+.||| .|. +..||+.+.|+|+
T Consensus 134 G~~~~~~v~~LPG--~P~s~~~~~~~v~P~L~ 163 (189)
T 1jlj_A 134 GIRGKTLIINLPG--SKKGSQECFQFILPALP 163 (189)
T ss_dssp EEETTEEEEEECS--SHHHHHHHHHHHGGGHH
T ss_pred EEECCeEEEECCC--CHHHHHHHHHHHHHHHH
Confidence 65322 3899999 998 9899986677664
No 10
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=76.77 E-value=4.1 Score=27.06 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=37.4
Q ss_pred ecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 95 TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 95 ~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
+-..||++...|+++..-. -+.+..++|+++.++...++++..+.+.+.|.
T Consensus 22 tvtteselqkvlnelmdyi--------kkqgakrvrisitartkkeaekfaailikvfa 72 (106)
T 1qys_A 22 TVTTESELQKVLNELMDYI--------KKQGAKRVRISITARTKKEAEKFAAILIKVFA 72 (106)
T ss_dssp EESSSSHHHHHHHHHHHHH--------HHHCCSEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHH--------HhcCCcEEEEEEEecchhHHHHHHHHHHHHHH
Confidence 3457899999999886421 23445679999999988888888777766554
No 11
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=76.31 E-value=13 Score=25.48 Aligned_cols=51 Identities=6% Similarity=-0.016 Sum_probs=36.2
Q ss_pred HHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335 102 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 152 (161)
Q Consensus 102 la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l 152 (161)
..+.+..+...+.+=-+-..|+..+-.+|+.+++.+++.+++..+.+.+.+
T Consensus 43 ~~~~idgl~~~~~~gwvlvRpSGTEP~irvy~Ea~~~~~~~~~~~~~~~~i 93 (112)
T 1wjw_A 43 LQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLV 93 (112)
T ss_dssp HHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhhhhhcEEEEcCCcEEEEEeCCCccEEEEEEEECCHHHHHHHHHHHHHHH
Confidence 455566665566554566778776778999999999887777666665544
No 12
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=69.65 E-value=22 Score=23.67 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=36.4
Q ss_pred hHHHHHHHhhhhhCCCcEEEEeeecC--Cc--cEEEEEEec-CH-HHHHHHHHHHHHHc
Q 031335 100 LEAAQPLSKLCLEFPDLHIGCYRKSR--QG--PLIISFEGK-DQ-ARIEAAIESLFKKF 152 (161)
Q Consensus 100 S~la~~L~~l~~~~~~v~igsyp~~~--~~--~v~lt~~g~-d~-~~~~~a~~~l~~~l 152 (161)
-+|...|+....+.|+|.++.|-... .. .+||...+. +. +.+.+|++.|.+.+
T Consensus 22 HTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~ 80 (92)
T 2pa8_L 22 HTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMT 80 (92)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 67889998877788999999986433 33 466666643 43 55677777666554
No 13
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=62.17 E-value=37 Score=23.76 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=35.6
Q ss_pred hHHHHHHHhhhhhCCCcEEEEeeecC--Cc--cEEEEEEec-CH-HHHHHHHHHHHHHc
Q 031335 100 LEAAQPLSKLCLEFPDLHIGCYRKSR--QG--PLIISFEGK-DQ-ARIEAAIESLFKKF 152 (161)
Q Consensus 100 S~la~~L~~l~~~~~~v~igsyp~~~--~~--~v~lt~~g~-d~-~~~~~a~~~l~~~l 152 (161)
-+|...|+....+.|+|.++.|-... .. .+||...|. +. +.+.+|++.|.+.+
T Consensus 40 HTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~~~p~eaL~~a~~~L~~~~ 98 (120)
T 1twf_K 40 HTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKL 98 (120)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 67899999877778999999986433 33 366666653 43 55667766665543
No 14
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=58.81 E-value=29 Score=23.15 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=26.5
Q ss_pred hCCCcEEEEeeecC-CccEEEEEEecCHHHHHHHHHHHHH
Q 031335 112 EFPDLHIGCYRKSR-QGPLIISFEGKDQARIEAAIESLFK 150 (161)
Q Consensus 112 ~~~~v~igsyp~~~-~~~v~lt~~g~d~~~~~~a~~~l~~ 150 (161)
..|++++ +...+ .+++.+++++++.+.+.+..+.|++
T Consensus 28 ~ipgvEi--~~~~~~~GkiVV~iEa~~~~~l~~~i~~I~~ 65 (95)
T 2jsx_A 28 AFPGCEV--AVSDAPSGQLIVVVEAEDSETLIQTIESVRN 65 (95)
T ss_dssp TSTTEEE--EEEETTTTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEE--EEecCCCCCEEEEEEeCCHHHHHHHHHHHhc
Confidence 4578876 34333 4789999999998887777766654
No 15
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=55.14 E-value=54 Score=23.35 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=32.3
Q ss_pred ecCChhH---HHHHHHhhhhhCCCcEEEEeee-cCCccEEEEEEecCHHHHHHHHHHHH
Q 031335 95 TNLSDLE---AAQPLSKLCLEFPDLHIGCYRK-SRQGPLIISFEGKDQARIEAAIESLF 149 (161)
Q Consensus 95 ~gi~ES~---la~~L~~l~~~~~~v~igsyp~-~~~~~v~lt~~g~d~~~~~~a~~~l~ 149 (161)
+|+||-. ++..-+.+..+| ++.+.+--- .+.+-..+.++|+|.+.+++|..+..
T Consensus 48 tgvpeqvrkelakeaerl~~ef-ni~v~y~imgsgsgvm~i~f~gddlea~ekalkemi 105 (170)
T 4hhu_A 48 TGVPEQVRKELAKEAERLKAEF-NINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMI 105 (170)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHH-TCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHHHHHHhc-ceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHH
Confidence 7999864 333334455555 444443331 22345778889999888877766543
No 16
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=52.00 E-value=11 Score=28.32 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=18.3
Q ss_pred eEEEecCCCCch-hHHHHHHHHHHHH
Q 031335 54 NVIILTATNVTE-LDKEWNCLIELLR 78 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~~v~p~L~ 78 (161)
-|+.||| .|. ..-.|+.+.|.|+
T Consensus 152 ~V~~LPG--nP~aa~~~~~~l~P~L~ 175 (185)
T 3rfq_A 152 LVVNLAG--SRYAVRDGMATLNPLAA 175 (185)
T ss_dssp EEEEECS--SHHHHHHHHHHHHHHHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHH
Confidence 3899999 997 7777776777774
No 17
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=50.22 E-value=60 Score=22.51 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=35.7
Q ss_pred hHHHHHHHhhhhhCCCcEEEEeeecC--Cc--cEEEEEEecCH-HHHHHHHHHHHHHc
Q 031335 100 LEAAQPLSKLCLEFPDLHIGCYRKSR--QG--PLIISFEGKDQ-ARIEAAIESLFKKF 152 (161)
Q Consensus 100 S~la~~L~~l~~~~~~v~igsyp~~~--~~--~v~lt~~g~d~-~~~~~a~~~l~~~l 152 (161)
-+|...|+....+.|+|.++.|--.. .. .++|...|... +.+.+|++.|.+.+
T Consensus 32 HTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~p~eaL~~al~~L~~~~ 89 (115)
T 1xpp_A 32 NTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGKPQSAIKRAVRKLSKLY 89 (115)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCChHHHHHHHHHHHHHHH
Confidence 67899999877788999999986433 33 47777766543 44566666555443
No 18
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=50.10 E-value=30 Score=23.79 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=36.5
Q ss_pred ecCChhHHHHHHHhhhhh-CC-CcEEEEeeecCCc--cEEEEEEecCHHHHHHHHHHHHH
Q 031335 95 TNLSDLEAAQPLSKLCLE-FP-DLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK 150 (161)
Q Consensus 95 ~gi~ES~la~~L~~l~~~-~~-~v~igsyp~~~~~--~v~lt~~g~d~~~~~~a~~~l~~ 150 (161)
.|..+.++.+.+.++.++ .| +..+..-++..+. .+.+++...+.+.++++.++|.+
T Consensus 42 IG~a~~~~~~~V~~vv~~~~p~d~~~~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~ 101 (109)
T 1rwu_A 42 MGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGK 101 (109)
T ss_dssp EEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSC
T ss_pred EEECcHHHHHHHHHHHHHhCCCCCCceecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 465555566666655444 45 5556667765443 47778888888888888777754
No 19
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=49.10 E-value=19 Score=23.93 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=29.7
Q ss_pred HHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 106 LSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 106 L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
++++.+++++++|-+ |..+...-++++.|.+. .+++|.+.|.+.+.
T Consensus 39 Ir~I~eetggv~I~i-~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 39 IRSIMEECGGVHIHF-PVEGSGSDTVVIRGPSS-DVEKAKKQLLHLAE 84 (95)
T ss_dssp HHHHHHHHTSCEEEC-CCTTTTCCEEEEESCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEe-CCCCCCcceEEEEcCHH-HHHHHHHHHHHHHh
Confidence 356767766777755 55444444677777766 77788777776543
No 20
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=47.57 E-value=5 Score=30.47 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=18.4
Q ss_pred CCcccEEEec-eEEEecCCCCch-hHHHHHH
Q 031335 44 KLLLPLIKCQ-NVIILTATNVTE-LDKEWNC 72 (161)
Q Consensus 44 ~GtAPG~~i~-~v~~LPG~~vP~-m~~m~~~ 72 (161)
.++| |+.=+ -|+.||| .|. ++.+|+.
T Consensus 118 r~~a-G~~~~~~v~~LPG--~P~a~~~~~~~ 145 (195)
T 1di6_A 118 RQVG-VIRKQALILNLPG--QPKSIKETLEG 145 (195)
T ss_dssp CCCE-EEETTEEEEEECS--SHHHHHHHHHE
T ss_pred cceE-EEECCEEEEECCC--CHHHHHHHHHH
Confidence 3445 55322 4899999 998 8888875
No 21
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=45.79 E-value=41 Score=22.55 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=26.9
Q ss_pred HHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335 106 LSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 152 (161)
Q Consensus 106 L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l 152 (161)
++++..+++++.|. .|+. +. .++++|. .+.+++|.+.|.+.+
T Consensus 49 Ik~i~~~~~~v~I~-fp~~-~~--~ItI~G~-~~~V~~a~~~I~~~v 90 (102)
T 2ctf_A 49 LAKITQQMPKVHIE-FTEG-ED--KITLEGP-TEDVSVAQEQIEGMV 90 (102)
T ss_dssp HHHHHHHCSSSEEE-ECSS-SC--EEEEEEC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEE-eCCC-CC--EEEEECC-HHHHHHHHHHHHHHH
Confidence 35677777888886 4642 22 4777776 566677766666544
No 22
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=44.90 E-value=50 Score=22.15 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=31.0
Q ss_pred hHHHHHHHhhhh---hCCCcEEEEeeecC-CccEEEEEEecCHHHHHHHHHHHHH
Q 031335 100 LEAAQPLSKLCL---EFPDLHIGCYRKSR-QGPLIISFEGKDQARIEAAIESLFK 150 (161)
Q Consensus 100 S~la~~L~~l~~---~~~~v~igsyp~~~-~~~v~lt~~g~d~~~~~~a~~~l~~ 150 (161)
+.+-..|..+.. .-|++++-+.-... .+.++|.+.++|=+.+|++.+.+.+
T Consensus 8 ~~fl~lL~~L~~~l~~vp~l~~~sLryD~~R~ELrlq~~A~dF~~~E~lr~~l~~ 62 (95)
T 2w7v_A 8 VAMLSWLAALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAE 62 (95)
T ss_dssp HHHHHHGGGHHHHHHTSTTCEEEEEEEETTTTEEEEEEEESSSHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEeecCCCCeEEEEEecCCHHHHHHHHHHhhc
Confidence 444455544433 33677877776433 2458888888877767776666644
No 23
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.24 E-value=23 Score=24.96 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=34.7
Q ss_pred hHHHHHHHhhhhhCCCcEEEEee--ecCCcc--EEEEEEec-C-HHHHHHHHHHHHHHc
Q 031335 100 LEAAQPLSKLCLEFPDLHIGCYR--KSRQGP--LIISFEGK-D-QARIEAAIESLFKKF 152 (161)
Q Consensus 100 S~la~~L~~l~~~~~~v~igsyp--~~~~~~--v~lt~~g~-d-~~~~~~a~~~l~~~l 152 (161)
-+|...|+....+.|+|.++.|- |.-... +||...+. + .+.+.+|++.|.+.+
T Consensus 39 HTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~~~p~eaL~~al~~L~~~~ 97 (123)
T 3h0g_K 39 HTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHL 97 (123)
T ss_dssp SSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 66899999877788999998885 333344 55555442 3 455666666665543
No 24
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic hexamer, C6 point symmetry, carboxysome; 1.80A {Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Probab=43.86 E-value=55 Score=23.09 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
-+|++..|-....+.+.+.+.| |.+.++.|++...+...
T Consensus 29 AnVelv~~e~~~~G~~~vii~G-DVsaV~aAveag~~~~~ 67 (125)
T 2a10_A 29 GRITIVGYIRAGSARFTLNIRG-DVQEVKTAMAAGIDAIN 67 (125)
T ss_dssp SSCEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEecCCCEEEEEEEE-cHHHHHHHHHHHHHHHh
Confidence 4899999988777788888888 66666777666555443
No 25
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=43.75 E-value=58 Score=21.92 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=29.1
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
-+|++..|-....+.+.+.++| |.+.+++|.+...+...
T Consensus 27 A~V~lv~~~~~~~G~~~vii~G-dVsaV~~Av~ag~~~~~ 65 (99)
T 3cim_A 27 ARVTLVGYEKIGSGRVTVIVRG-DVSEVQASVSAGIEAAN 65 (99)
T ss_dssp SSEEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCcEEEEEEEE-cHHHHHHHHHHHHHHHh
Confidence 4899999988777788888888 66667777766555443
No 26
>2a1b_A CCMK2, carbon dioxide concentrating mechanism protein CC 2; cyclic hexamer, C6 point symmetry, carboxysome; 2.90A {Synechocystis SP} SCOP: d.58.56.1
Probab=40.75 E-value=76 Score=22.06 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=29.6
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
-+|++..|-....+.+.+.++| |.+.++.|++...+...
T Consensus 27 AnVelv~~~~~~~G~~~vii~G-DVsaV~aAveag~~~~~ 65 (116)
T 2a1b_A 27 ARVTLVGYEKIGSGRVTVIVRG-DVSGVQASVSAGIEAAN 65 (116)
T ss_dssp SSCEEEEEEECSSSEEEEEEES-CHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCcEEEEEEEE-cHHHHHHHHHHHHHHHh
Confidence 4899999998777888898988 66767777776555443
No 27
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=40.66 E-value=19 Score=30.39 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.1
Q ss_pred eEEEecCCCCch-hHHHHH-HHHHHHHh
Q 031335 54 NVIILTATNVTE-LDKEWN-CLIELLRS 79 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~-~v~p~L~~ 79 (161)
-|+.||| .|. +..+|+ .+.|+|+.
T Consensus 303 ~v~~LPG--~P~sa~~~~~~~v~P~L~~ 328 (419)
T 2fts_A 303 IIFALPG--NPVSAVVTCNLFVVPALRK 328 (419)
T ss_dssp EEEEECS--SHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 4899999 998 888887 67898865
No 28
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=38.26 E-value=36 Score=22.20 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=16.7
Q ss_pred cEEEEEEecCHHHH-HHHHHHHHHHcc
Q 031335 128 PLIISFEGKDQARI-EAAIESLFKKFH 153 (161)
Q Consensus 128 ~v~lt~~g~d~~~~-~~a~~~l~~~l~ 153 (161)
.++|+++|.|++.+ ++..+.+.+.|+
T Consensus 60 ~i~i~a~G~De~~A~~~l~~l~~~~fg 86 (88)
T 3le1_A 60 VVKLSAEGDDEEEAIKALVDLIESKFG 86 (88)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHTTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccC
Confidence 59999999997643 444444444444
No 29
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=35.83 E-value=28 Score=29.14 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=27.7
Q ss_pred hcccccCCCCceeeeCCCCcccEEEeceEEEecCCCCch-hHHHHHH-HHHHHHh
Q 031335 27 SQMALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTE-LDKEWNC-LIELLRS 79 (161)
Q Consensus 27 ~rqA~vPega~~~l~N~~GtAPG~~i~~v~~LPG~~vP~-m~~m~~~-v~p~L~~ 79 (161)
.++++.|-.. ..+ | ..|+.||| .|. ...+|+. +.|.|+.
T Consensus 277 ~~va~~PG~p-~~~--------g---~~v~~LPG--~P~sa~~~~~~~v~P~L~~ 317 (396)
T 1wu2_A 277 HGTTIKPGRP-FGY--------G---EKVFIMSG--YPVSVFAQFNLFVKHALAK 317 (396)
T ss_dssp ESBSEESCTT-CEE--------E---TTEEECCS--SHHHHHHHHHHTHHHHHHH
T ss_pred eeecccCCCc-eEc--------c---CeEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 3566666665 444 1 56999999 998 8888885 5687754
No 30
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=35.47 E-value=1.9e+02 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=28.6
Q ss_pred EEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 118 IGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 118 igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
+-..|+..+-.+|+.+++.+++.+++..+.+.+.+.
T Consensus 418 ~lvRpSgTEP~irvy~Ea~~~~~~~~~~~~~~~~i~ 453 (455)
T 2f7l_A 418 FLVRKSGTEPIIRIMAEAKDENVANNLVNELKKIVE 453 (455)
T ss_dssp EEEEECSSSSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred EEEeeCCCCcEEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 446676656679999999999988888888887764
No 31
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=35.19 E-value=1e+02 Score=26.62 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335 102 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 152 (161)
Q Consensus 102 la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l 152 (161)
+.+.+..+...+++=-+-..|+..+-.+|+.+++.+++.+++..+++.+.+
T Consensus 493 ~~~~iDGv~~~~~~gw~lvRpSGTEP~lRvy~Ea~~~e~~~~l~~~~~~~v 543 (544)
T 2dka_A 493 MQDEIDKLVAQYPNGRSFVRASGTEDAVRVYAEADTQNNVEELSKAVSELV 543 (544)
T ss_dssp HHHHHHHHHTTSTTCEEEEEEC----CEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhcccceEEEEcCCEEEEEEcCCCCCEEEEEEEeCCHHHHHHHHHHHHHHh
Confidence 344555555556555677888776777999999999999988888887654
No 32
>2ewh_A Major carboxysome shell protein 1A; bacterial microcompartment domain; 1.40A {Halothiobacillus neapolitanus} SCOP: d.58.56.1 PDB: 2g13_A 3h8y_A
Probab=34.99 E-value=1e+02 Score=20.66 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=27.3
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 152 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l 152 (161)
-+|++..|-..+.+.+.+.++| |.+.++.+.+...+..
T Consensus 31 A~V~l~~~~~~~~g~~tv~i~G-dv~aV~aAv~ag~~~~ 68 (98)
T 2ewh_A 31 AEVRLVGRQFVGGGYVTVLVRG-ETGAVNAAVRAGADAC 68 (98)
T ss_dssp SSEEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEccCCeEEEEEEEE-cHHHHHHHHHHHHHHH
Confidence 4899999887767777777887 4566677766665544
No 33
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=33.88 E-value=1.3e+02 Score=25.52 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=33.6
Q ss_pred HHHHHhhhhhC-CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 103 AQPLSKLCLEF-PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 103 a~~L~~l~~~~-~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
.+.+..+...+ ++=-+=..|+..+--+|+.++++|++.+++..+.+.+.+.
T Consensus 412 ~~~i~~~~~~~~~~gw~lvRpSgTEP~lRv~~Ea~~~~~~~~l~~~~~~~i~ 463 (469)
T 3pdk_A 412 KEIIRVVEEEMNGDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVK 463 (469)
T ss_dssp HHHHHHHHHHCCSSCEEEEECCSSSCCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHheEeCCCcEEEEEeCCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 34454443333 3334556676656679999999999988877777666553
No 34
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=33.56 E-value=99 Score=20.11 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=25.9
Q ss_pred cCChhHHHHHH----HhhhhhCCCc--EEEEeeecCCccEEEEEEecCHHHHHHHHHHHHH
Q 031335 96 NLSDLEAAQPL----SKLCLEFPDL--HIGCYRKSRQGPLIISFEGKDQARIEAAIESLFK 150 (161)
Q Consensus 96 gi~ES~la~~L----~~l~~~~~~v--~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~ 150 (161)
++|...+.... +.+...||+. .+-..+.. ... |++.|...++-+.+.+.|++
T Consensus 12 ~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s-~n~--lsV~g~~k~dKe~i~eiLqE 69 (81)
T 1ghh_A 12 PLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAA-ANN--LSVIGATKEDKQRISEILQE 69 (81)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEES-SCE--EEEESCCHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHhhCCCCCceEEEeecC-CCc--eeecCCChhHHHHHHHHHHH
Confidence 56654443333 3567778986 66666644 222 44455443332333333333
No 35
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=33.04 E-value=30 Score=29.04 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=19.8
Q ss_pred eEEEecCCCCch-hHHHHH-HHHHHHHh
Q 031335 54 NVIILTATNVTE-LDKEWN-CLIELLRS 79 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~-~v~p~L~~ 79 (161)
.|+.||| .|. +..+|+ .+.|.|+.
T Consensus 296 ~v~~LPG--~P~sa~~~~~~~v~P~L~~ 321 (402)
T 1uz5_A 296 PVFGLPG--YPTSCLTNFTLLVVPLLLR 321 (402)
T ss_dssp EEEEECS--SHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHHHH
Confidence 4899999 998 888898 47888865
No 36
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=32.72 E-value=45 Score=19.98 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=19.9
Q ss_pred cEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 128 PLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
+||+++.++...++++..+.+.+.|.
T Consensus 3 rvrisitartkkeaekfaailikvfa 28 (62)
T 2gjh_A 3 RVRISITARTKKEAEKFAAILIKVFA 28 (62)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHH
Confidence 58888888888877887777766554
No 37
>3bn4_A Carbon dioxide-concentrating mechanism protein CC 1; hexamer, structural protein; 2.00A {Synechocystis SP}
Probab=31.84 E-value=1.3e+02 Score=21.03 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=29.6
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHccC
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 154 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~~ 154 (161)
-+|++..|-....+.+.+.++|+ .+.++.|++...+...+
T Consensus 27 A~V~Lv~~~~~~~G~~~vii~GD-VsAV~aAv~ag~~~a~~ 66 (122)
T 3bn4_A 27 ARVTLVGYEKIGSGRVTVIVRGD-VSEVQASVTAGIENIRR 66 (122)
T ss_dssp SSCEEEEEEEEETTEEEEEEEEC-HHHHHHHHHHHHHHGGG
T ss_pred CCcEEEEEEccCCcEEEEEEEEc-HHHHHHHHHHHHHHHhh
Confidence 48999999887777888888884 56667777766665543
No 38
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=31.63 E-value=24 Score=25.66 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=16.1
Q ss_pred eEEEecCCCCch-hHHHHHHHHHHH
Q 031335 54 NVIILTATNVTE-LDKEWNCLIELL 77 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~~v~p~L 77 (161)
-|+.||| -|. ..-.|+.+.|.|
T Consensus 128 ~v~~LPG--~P~aa~~~~~~v~P~l 150 (164)
T 3pzy_A 128 LIVNLPG--SPGGVRDGLGVLAGVL 150 (164)
T ss_dssp EEEEECS--SHHHHHHHHHHHHTTH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHH
Confidence 3899999 997 656666556655
No 39
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=31.33 E-value=67 Score=20.74 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=11.5
Q ss_pred cEEEEEEecCHHHHH
Q 031335 128 PLIISFEGKDQARIE 142 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~ 142 (161)
.++|+++|.|++.+-
T Consensus 60 ~i~i~~~G~De~~A~ 74 (88)
T 1y51_A 60 TIKITAEGADAAEAM 74 (88)
T ss_dssp EEEEEEESTTHHHHH
T ss_pred EEEEEEeCCCHHHHH
Confidence 488999999976443
No 40
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=30.63 E-value=68 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=12.2
Q ss_pred cEEEEEEecCHHHHHHH
Q 031335 128 PLIISFEGKDQARIEAA 144 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~~a 144 (161)
.|+|+++|.|++++-++
T Consensus 72 ~i~i~a~G~Dee~Al~~ 88 (100)
T 1kkl_H 72 EITISASGADENDALNA 88 (100)
T ss_dssp EEEEEEESTTHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHH
Confidence 48899999997644333
No 41
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=30.40 E-value=1.2e+02 Score=22.77 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=32.2
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHccCC
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRG 155 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~~~ 155 (161)
-+|++..+-+.+.+++.+.+.| |.+.++.+.+...+..++.
T Consensus 27 a~V~l~~~~~~~~G~~~~ii~G-dv~aV~~Av~a~~~~~~~~ 67 (192)
T 3n79_A 27 ANVDLLVSKTISPGKFLLMLGG-DIGAIQQAIETGTSQAGEM 67 (192)
T ss_dssp SSCEEEEEEEETTTEEEEEEEE-CHHHHHHHHHHHHHHHGGG
T ss_pred CCcEEEEEEeecCceEEEEEEc-cHHHHHHHHHHHHHHhhce
Confidence 4899998888777888888888 7788888888777666553
No 42
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=30.33 E-value=1.4e+02 Score=20.85 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=22.8
Q ss_pred cEEEEEEecCHHHHHHHHHHHHHHccC
Q 031335 128 PLIISFEGKDQARIEAAIESLFKKFHR 154 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~~a~~~l~~~l~~ 154 (161)
.+.+.+.+.+.+.+++|.+.|.+.+..
T Consensus 73 ~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 73 PLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 577778888999999999999988754
No 43
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=28.61 E-value=42 Score=28.27 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhC-CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHccC
Q 031335 102 AAQPLSKLCLEF-PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 154 (161)
Q Consensus 102 la~~L~~l~~~~-~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~~ 154 (161)
+.+.+.+....+ ++=-+=..|+..+--+|+.++++|++.+++..+.+.+.+..
T Consensus 387 ~~~~i~~~~~~~~~~gw~lvR~SgTEP~~rv~~Ea~~~~~~~~l~~~~~~~i~~ 440 (443)
T 3i3w_A 387 VASDVNDVEKRLGNRGRVLLRPSGTEPVLRVMVEADDKSLATNEAEYLVEKVKQ 440 (443)
T ss_dssp THHHHHHHHHHHGGGEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 444554433322 22234456665556699999999999988888887776643
No 44
>4axj_A EUTM, ethanolamine carboxysome structural protein; bacterial microcompartment; 1.62A {Clostridium difficile}
Probab=28.22 E-value=1.3e+02 Score=20.49 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=24.8
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHH
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFK 150 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~ 150 (161)
-+|++..|-+.+.+.+.+.++|+ -+.+++|++.-.+
T Consensus 30 A~V~lv~~~~~~~G~~~v~i~GD-VsaV~aAv~ag~~ 65 (104)
T 4axj_A 30 ANVQLVGKEQVGGGLVTVMVRGD-VGAVKAATDAGAA 65 (104)
T ss_dssp SSCEEEEEEECSTTEEEEEEEEC-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCeEEEEEEEEc-HHHHHHHHHHHHH
Confidence 48999999877777777888874 4555555554433
No 45
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=28.08 E-value=73 Score=20.58 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=27.7
Q ss_pred EEecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHH
Q 031335 93 LTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKK 151 (161)
Q Consensus 93 l~~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~ 151 (161)
+++..+ -+++..|.++.+.. ++.+...+.+++++.+.+.+.+..+.+...
T Consensus 23 irvstg-keleralqelekal--------aragarnvqitisaendeqakelleliarl 72 (96)
T 2jvf_A 23 IRVSTG-KELERALQELEKAL--------ARAGARNVQITISAENDEQAKELLELIARL 72 (96)
T ss_dssp EECCSS-SHHHHHHHHHHHHH--------HHHTCSEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEccc-HHHHHHHHHHHHHH--------HhccccceEEEEEecChHHHHHHHHHHHHH
Confidence 343333 45666777665542 333344578888887766555555444433
No 46
>3nwg_A Microcompartments protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.70A {Desulfitobacterium hafniense}
Probab=27.48 E-value=1.5e+02 Score=21.92 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=31.4
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHHHccCCc
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGA 156 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l~~~i 156 (161)
-+|++..+-+...+++.+.+.| |.+.++++.+...+..+..+
T Consensus 27 a~V~l~~~~~~~~G~~~vii~G-dv~aV~~Av~a~~~~~~~~v 68 (182)
T 3nwg_A 27 AQVDLLEAKPVCPGKYIVLICG-DVAAVQSSVTAGKTMAAHSV 68 (182)
T ss_dssp SSEEEEEEEECSTTCEEEEEEE-CHHHHHHHHHHHHHHHGGGE
T ss_pred CCeEEEEEEeccCcEEEEEEEe-cHHHHHHHHHHHHHhccCeE
Confidence 4899999887766777788888 77778888877766655443
No 47
>3ngk_A Propanediol utilization protein PDUA; BMC shell protein, carboxysome, unknown FU; 2.26A {Salmonella enterica subsp}
Probab=26.89 E-value=1.4e+02 Score=20.21 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHH
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLF 149 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~ 149 (161)
-+|++..|-+.+.+.+.+.++|+ -+.++.|++.-.
T Consensus 36 A~V~lv~~~~~~~G~~~v~v~GD-VsaV~aAv~ag~ 70 (102)
T 3ngk_A 36 ANVMLVGYEKIGSGLVTVIVRGD-VGAVKAATDAGA 70 (102)
T ss_dssp SSCEEEEEEECSTTEEEEEEEEC-HHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCcEEEEEEEEe-HHHHHHHHHHHH
Confidence 48999999777777888888874 455555555433
No 48
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=26.80 E-value=89 Score=20.31 Aligned_cols=26 Identities=8% Similarity=0.298 Sum_probs=21.9
Q ss_pred ccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335 127 GPLIISFEGKDQARIEAAIESLFKKF 152 (161)
Q Consensus 127 ~~v~lt~~g~d~~~~~~a~~~l~~~l 152 (161)
.++||++.|.|-..++++++.|.+..
T Consensus 4 ~kiRI~L~S~d~~~Ld~~~~~Iv~~a 29 (83)
T 3r2c_J 4 EKIRIKLRAYDHRLLDQSVKQIIETV 29 (83)
T ss_dssp CCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHHH
Confidence 45899999999999999999887654
No 49
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=25.84 E-value=36 Score=28.58 Aligned_cols=24 Identities=13% Similarity=-0.057 Sum_probs=19.4
Q ss_pred eEEEecCCCCch-hHHHHH-HHHHHHHh
Q 031335 54 NVIILTATNVTE-LDKEWN-CLIELLRS 79 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~-~v~p~L~~ 79 (161)
.||.||| .|. ...+|+ .+.|.|+.
T Consensus 293 ~v~~LPG--nP~sa~~~~~~~v~P~L~~ 318 (411)
T 1g8l_A 293 WFCGLPG--NPVSATLTFYQLVQPLLAK 318 (411)
T ss_dssp EEEECCS--SHHHHHHHHHHTHHHHHHH
T ss_pred EEEEcCC--ChHHHHHHHHHHHHHHHHH
Confidence 4999999 998 878887 57888854
No 50
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=25.83 E-value=1.4e+02 Score=19.79 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=36.9
Q ss_pred EEEEEE--ecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecC---HHHHHHHHHHHHHHccCC
Q 031335 89 TSKSLT--TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKD---QARIEAAIESLFKKFHRG 155 (161)
Q Consensus 89 ~~~~l~--~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d---~~~~~~a~~~l~~~l~~~ 155 (161)
..++++ .++.|-++.-.++.+.. | +-..+.+.+.|.++|.. .+...+..+.+.+.+.+.
T Consensus 6 ~vKEikl~p~Id~hD~~~K~k~a~~-F-------L~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~ 69 (94)
T 1tig_A 6 NVKEVRLSPTIEEHDFNTKLRNARK-F-------LEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADI 69 (94)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHH-H-------HHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTT
T ss_pred eeEEEEecCCcCcchHHHHHHHHHH-H-------HHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhh
Confidence 345665 69999999999987642 2 22222244566666765 344566667777777654
No 51
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=25.15 E-value=78 Score=20.31 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.2
Q ss_pred cEEEEEEecCHHHH
Q 031335 128 PLIISFEGKDQARI 141 (161)
Q Consensus 128 ~v~lt~~g~d~~~~ 141 (161)
.+.|+++|.|++.+
T Consensus 60 ~i~i~~~G~De~~A 73 (85)
T 3ccd_A 60 VVTISAEGEDEQKA 73 (85)
T ss_dssp EEEEEEESTTHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 59999999997643
No 52
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=25.11 E-value=1.7e+02 Score=23.67 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=34.3
Q ss_pred cCChhHHHHHHHhhhhhCCCcE-EEEeeecCCccEEEEEEecCHHHHHHHHHHHHHH
Q 031335 96 NLSDLEAAQPLSKLCLEFPDLH-IGCYRKSRQGPLIISFEGKDQARIEAAIESLFKK 151 (161)
Q Consensus 96 gi~ES~la~~L~~l~~~~~~v~-igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~ 151 (161)
...+..+.+.|++|......++ +|+||......... ..+....+.+++.+++...
T Consensus 254 ~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~~~~~~~-~~~~~~~~~~~~~~w~~~~ 309 (313)
T 3mwb_A 254 HATDSRVADALAGLHRISPATRFLGSYARADKQPAVV-APHTSDAAFASAHAWVDSI 309 (313)
T ss_dssp CTTSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCCCC-CTTCSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCcEEEEeeeecCccCCccc-CCCCCCcchhHHHHHHHHh
Confidence 3567789999999877665554 79999865433221 1122345556666666554
No 53
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=24.91 E-value=14 Score=19.76 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.6
Q ss_pred cccccCCCCceeee
Q 031335 28 QMALLPEGTTELLH 41 (161)
Q Consensus 28 rqA~vPega~~~l~ 41 (161)
-||++|+|. +.++
T Consensus 11 iqa~ipk~g-rmlp 23 (34)
T 1ssz_A 11 IQAMIPKGG-RMLP 23 (34)
T ss_dssp HHHHCSSSC-CCCH
T ss_pred HHHHccccc-hhhH
Confidence 489999998 7765
No 54
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=24.38 E-value=1.2e+02 Score=19.74 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=22.6
Q ss_pred ccEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 127 GPLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 127 ~~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
.+++|+++|-|...++++++.|.+...
T Consensus 9 ~kirI~L~S~d~~~Ld~~~~~Iv~~ak 35 (87)
T 3d3c_J 9 QRIRIRLKAFDHRLIDQATAEIVETAK 35 (87)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 369999999999999999998876543
No 55
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=24.15 E-value=1.2e+02 Score=25.72 Aligned_cols=33 Identities=9% Similarity=-0.057 Sum_probs=23.8
Q ss_pred EeeecCCccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335 120 CYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 152 (161)
Q Consensus 120 syp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l 152 (161)
..|+..+-.+|+.+++++++.+++..+.+.+.+
T Consensus 439 vRpSgTEP~lrvy~Ea~s~e~~~~l~~~~~~~i 471 (481)
T 4hjh_A 439 YRASGNAPELRCYVESSDDTQAAKLQALGLEIA 471 (481)
T ss_dssp EEECSSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EecCCCCceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 446555556999999999988777666655544
No 56
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=24.11 E-value=96 Score=19.96 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=11.6
Q ss_pred cEEEEEEecCHHHHH
Q 031335 128 PLIISFEGKDQARIE 142 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~ 142 (161)
.++|+++|.|++.+-
T Consensus 60 ~i~i~~~G~De~~A~ 74 (88)
T 1sph_A 60 EITISASGADENDAL 74 (88)
T ss_dssp EEEEEEESTTHHHHH
T ss_pred EEEEEEeCCCHHHHH
Confidence 589999999976443
No 57
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=23.86 E-value=1.2e+02 Score=25.43 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=25.3
Q ss_pred EEeeecCCccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335 119 GCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 152 (161)
Q Consensus 119 gsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l 152 (161)
-..|+..+-.+|+.+++.+++.+++..+.+.+.+
T Consensus 419 lvRpSgTEP~~rvy~Ea~~~~~~~~l~~~~~~~i 452 (463)
T 1p5d_X 419 LVRASNTTPVLVLRFEADTEEELERIKTVFRNQL 452 (463)
T ss_dssp EEEECSSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCceEEEEEEECCHHHHHHHHHHHHHHH
Confidence 3556555556999999999988877777766555
No 58
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=23.79 E-value=1.6e+02 Score=19.33 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=32.3
Q ss_pred EecCChhHHHHHHHhhhhhCCCcEEEEeeecCCccEEEEEEecC---HHHHHHHHHHHHHHccC
Q 031335 94 TTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKD---QARIEAAIESLFKKFHR 154 (161)
Q Consensus 94 ~~gi~ES~la~~L~~l~~~~~~v~igsyp~~~~~~v~lt~~g~d---~~~~~~a~~~l~~~l~~ 154 (161)
+.++.|-++.-.++.+.. | +-..+.+.+.|.++|.. .+...+..+.+.+.+.+
T Consensus 8 ~p~Id~hD~~~K~k~a~~-F-------L~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d 63 (89)
T 1i96_V 8 RVKIDEHDYQTKLGHIKR-F-------LQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKD 63 (89)
T ss_pred cCCcCcchHHHHHHHHHH-H-------HHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhh
Confidence 379999999999987643 2 22222345666667765 34445555566555554
No 59
>3mpy_A Ethanolamine utilization protein EUTM; bacterial microcompartment, shell protein, ethanolamine AMMO lyase, carboxysome, membrane protein; 2.00A {Escherichia coli} PDB: 3mpw_G 3i6p_A
Probab=23.56 E-value=1.8e+02 Score=19.74 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=25.3
Q ss_pred CCcEEEEeeecCCccEEEEEEecCHHHHHHHHHHHHH
Q 031335 114 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFK 150 (161)
Q Consensus 114 ~~v~igsyp~~~~~~v~lt~~g~d~~~~~~a~~~l~~ 150 (161)
-+|++..|-+.+.+.+.+.++|+ -+.++.|++...+
T Consensus 26 A~V~l~~~~~~~~G~~~v~i~GD-VsaV~aAv~ag~~ 61 (103)
T 3mpy_A 26 ARVKLVGVKQIGGGLCTAMVRGD-VAACKAATDAGAA 61 (103)
T ss_dssp SSEEEEEEEECSTTEEEEEEEEC-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCCEEEEEEEEe-HHHHHHHHHHHHH
Confidence 48999999777778888888874 4555555554443
No 60
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=22.82 E-value=1.3e+02 Score=25.68 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=23.5
Q ss_pred eeecCCccEEEEEEecCHHHHHHHHHHHHHHc
Q 031335 121 YRKSRQGPLIISFEGKDQARIEAAIESLFKKF 152 (161)
Q Consensus 121 yp~~~~~~v~lt~~g~d~~~~~~a~~~l~~~l 152 (161)
.|+..+-.+|+.+++++++.+++..+.+.+.+
T Consensus 443 RpSgTEP~lrv~~Ea~~~~~~~~l~~~~~~~i 474 (485)
T 3uw2_A 443 RSSNTTPVVVLRFEATSDAALARIQDDFRRAL 474 (485)
T ss_dssp EECSSSSSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EecCCCCeEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 45444456999999999988877777666544
No 61
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=22.51 E-value=54 Score=24.06 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=17.6
Q ss_pred eEEEecCCCCch-hHHHHH-HHHHHHHh
Q 031335 54 NVIILTATNVTE-LDKEWN-CLIELLRS 79 (161)
Q Consensus 54 ~v~~LPG~~vP~-m~~m~~-~v~p~L~~ 79 (161)
-|+.||| -|. ..-.|+ .+.|.|+.
T Consensus 146 ~v~~LPG--~P~aa~~~~~~~v~P~l~~ 171 (178)
T 2pjk_A 146 IVYLLPG--SPDAVKLALKELILPEVGH 171 (178)
T ss_dssp EEEEECS--CHHHHHHHHHHTHHHHHHH
T ss_pred EEEECCC--CcHHHHHHHHHHHHHHHHH
Confidence 3899999 997 656666 57777743
No 62
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=22.35 E-value=1e+02 Score=19.86 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=12.4
Q ss_pred cEEEEEEecCHHHHHHH
Q 031335 128 PLIISFEGKDQARIEAA 144 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~~a 144 (161)
.+.|+++|.|++.+-++
T Consensus 60 ~i~i~a~G~De~~A~~~ 76 (88)
T 1ka5_A 60 EITIYADGSDESDAIQA 76 (88)
T ss_dssp EEEEEEESSSHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHH
Confidence 58999999997654333
No 63
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=21.94 E-value=1.1e+02 Score=19.73 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=12.5
Q ss_pred cEEEEEEecCHHHHHHH
Q 031335 128 PLIISFEGKDQARIEAA 144 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~~a 144 (161)
.++|+++|.|++.+-++
T Consensus 59 ~i~i~a~G~De~~Al~~ 75 (88)
T 1pch_A 59 EITIQADGNDADQAIQA 75 (88)
T ss_dssp EEEEEEESTTHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHH
Confidence 59999999997644333
No 64
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=21.59 E-value=1.2e+02 Score=19.56 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=11.5
Q ss_pred cEEEEEEecCHHHHH
Q 031335 128 PLIISFEGKDQARIE 142 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~ 142 (161)
.+.|+++|.|++.+-
T Consensus 60 ~i~i~~~G~De~~A~ 74 (88)
T 1ptf_A 60 DVTITVDGADEAEGM 74 (88)
T ss_dssp EEEEEEESTTHHHHH
T ss_pred EEEEEEeCCCHHHHH
Confidence 588999999976443
No 65
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.41 E-value=1e+02 Score=21.37 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=20.4
Q ss_pred cEEEEEEecCHHHHHHHHHHHHHHcc
Q 031335 128 PLIISFEGKDQARIEAAIESLFKKFH 153 (161)
Q Consensus 128 ~v~lt~~g~d~~~~~~a~~~l~~~l~ 153 (161)
+.++.+.+.+.+.+++|.+.+.+.+.
T Consensus 73 ~l~V~I~a~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 73 PMYIYISHPKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp BCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 46788888899988888888777653
No 66
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=20.81 E-value=20 Score=19.58 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.3
Q ss_pred cccccCCCCceeee
Q 031335 28 QMALLPEGTTELLH 41 (161)
Q Consensus 28 rqA~vPega~~~l~ 41 (161)
-||++|+|. ++++
T Consensus 11 iq~vIPk~~-r~lP 23 (34)
T 2dwf_A 11 IQAMIPKGG-RMLP 23 (34)
T ss_dssp HHHHCTTCC-SCCS
T ss_pred HHhhcCCcc-cchH
Confidence 489999998 7764
No 67
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=20.54 E-value=1.7e+02 Score=19.03 Aligned_cols=52 Identities=10% Similarity=0.170 Sum_probs=28.2
Q ss_pred hHHHHHHHhhhhhCC-CcE--EEEeeecC---CccEEEEEEecCHHHHHHHHHHHHHH
Q 031335 100 LEAAQPLSKLCLEFP-DLH--IGCYRKSR---QGPLIISFEGKDQARIEAAIESLFKK 151 (161)
Q Consensus 100 S~la~~L~~l~~~~~-~v~--igsyp~~~---~~~v~lt~~g~d~~~~~~a~~~l~~~ 151 (161)
+.-.+.++++..++. +++ .|.--... .+.+.+.+.|++.+.++++.+.|++.
T Consensus 31 ~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~ 88 (98)
T 3ced_A 31 TTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIER 88 (98)
T ss_dssp SCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHT
T ss_pred ccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHC
Confidence 334555666666652 222 23222211 14577777773445578888888763
Done!