Query 031336
Match_columns 161
No_of_seqs 131 out of 369
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 12:39:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 2.2E-40 4.7E-45 283.5 11.9 158 2-159 88-254 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.9E-29 4.1E-34 217.0 12.5 155 3-160 118-281 (308)
3 PRK13595 ubiA prenyltransferas 99.7 2.2E-17 4.8E-22 142.5 11.9 97 4-114 117-214 (292)
4 PRK13105 ubiA prenyltransferas 99.7 1E-16 2.2E-21 137.4 12.5 102 3-114 103-205 (282)
5 PRK12872 ubiA prenyltransferas 99.7 4.2E-16 9E-21 130.5 11.7 102 3-114 102-206 (285)
6 TIGR01476 chlor_syn_BchG bacte 99.7 2.8E-16 6.1E-21 132.4 10.7 108 5-123 106-219 (283)
7 TIGR02056 ChlG chlorophyll syn 99.7 6.7E-16 1.5E-20 132.5 12.3 101 4-114 127-228 (306)
8 PRK12392 bacteriochlorophyll c 99.7 5.4E-16 1.2E-20 135.3 11.9 100 5-114 125-225 (331)
9 PLN00012 chlorophyll synthetas 99.6 1.4E-15 3E-20 134.9 11.7 109 4-121 196-307 (375)
10 PRK06080 1,4-dihydroxy-2-napht 99.6 5.2E-15 1.1E-19 124.9 11.9 114 4-127 112-230 (293)
11 PRK07419 1,4-dihydroxy-2-napht 99.6 1E-14 2.2E-19 126.0 11.3 115 3-127 117-236 (304)
12 PRK07566 bacteriochlorophyll/c 99.6 1.3E-14 2.7E-19 125.1 11.2 102 4-114 131-234 (314)
13 TIGR02235 menA_cyano-plnt 1,4- 99.6 1.8E-14 4E-19 123.2 11.8 115 3-127 104-223 (285)
14 PRK12875 ubiA prenyltransferas 99.6 6.6E-14 1.4E-18 119.8 13.3 93 9-114 117-210 (282)
15 PRK13387 1,4-dihydroxy-2-napht 99.6 3.8E-14 8.1E-19 122.7 11.5 121 3-127 112-251 (317)
16 PLN02922 prenyltransferase 99.5 4.7E-14 1E-18 122.3 11.8 121 3-127 121-250 (315)
17 TIGR00751 menA 1,4-dihydroxy-2 99.5 1.3E-13 2.8E-18 118.0 12.3 112 6-127 110-226 (284)
18 PF01040 UbiA: UbiA prenyltran 99.5 4.3E-14 9.4E-19 114.0 7.6 100 4-114 91-191 (257)
19 PRK13591 ubiA prenyltransferas 99.5 1.9E-13 4.2E-18 118.9 11.3 109 11-127 125-241 (307)
20 PRK05951 ubiA prenyltransferas 99.5 2.4E-13 5.3E-18 116.1 11.4 101 4-114 115-216 (296)
21 PRK12884 ubiA prenyltransferas 99.5 4.5E-13 9.7E-18 112.2 11.4 97 4-114 103-200 (279)
22 PRK12882 ubiA prenyltransferas 99.4 6E-13 1.3E-17 111.8 10.7 97 5-114 105-202 (276)
23 COG0382 UbiA 4-hydroxybenzoate 99.4 2.9E-12 6.3E-17 108.5 11.5 96 5-114 116-212 (289)
24 PRK09573 (S)-2,3-di-O-geranylg 99.4 3.5E-12 7.6E-17 107.5 10.8 95 5-114 104-199 (279)
25 TIGR01475 ubiA_other putative 99.3 9.4E-12 2E-16 105.0 10.1 91 12-114 112-203 (282)
26 PRK12883 ubiA prenyltransferas 99.3 2E-11 4.3E-16 102.7 11.6 96 4-114 103-199 (277)
27 PRK12847 ubiA 4-hydroxybenzoat 99.2 4.5E-11 9.8E-16 101.2 9.9 97 4-114 113-210 (285)
28 PRK13106 ubiA prenyltransferas 99.2 1.9E-10 4.2E-15 99.3 10.9 96 12-114 125-221 (300)
29 PRK12888 ubiA prenyltransferas 99.2 1.6E-10 3.4E-15 98.8 10.0 90 11-114 114-204 (284)
30 PLN02809 4-hydroxybenzoate non 99.2 1.8E-10 3.9E-15 98.9 10.0 140 6-159 115-260 (289)
31 TIGR01474 ubiA_proteo 4-hydrox 99.1 4.9E-10 1.1E-14 95.1 11.2 97 4-114 108-205 (281)
32 PRK12895 ubiA prenyltransferas 99.1 3.7E-10 7.9E-15 97.1 9.7 89 14-114 115-204 (286)
33 PRK13592 ubiA prenyltransferas 99.0 7E-10 1.5E-14 96.5 8.3 96 11-114 114-218 (299)
34 PRK12874 ubiA prenyltransferas 99.0 3E-09 6.4E-14 91.3 10.4 89 12-114 123-212 (291)
35 COG1575 MenA 1,4-dihydroxy-2-n 99.0 4.7E-09 1E-13 91.6 11.0 113 4-127 120-238 (303)
36 PRK12870 ubiA 4-hydroxybenzoat 99.0 1.8E-09 4E-14 92.3 8.2 92 9-114 119-211 (290)
37 PRK12886 ubiA prenyltransferas 99.0 6.6E-09 1.4E-13 89.0 11.4 91 10-114 116-207 (291)
38 PRK12876 ubiA prenyltransferas 98.9 7.2E-09 1.6E-13 90.1 10.5 95 9-114 120-217 (300)
39 PRK12848 ubiA 4-hydroxybenzoat 98.9 1.4E-08 3.1E-13 86.1 10.1 93 8-114 114-207 (282)
40 PRK12878 ubiA 4-hydroxybenzoat 98.9 1.6E-08 3.4E-13 87.7 9.9 97 4-114 140-237 (314)
41 PRK12871 ubiA prenyltransferas 98.8 3.8E-08 8.2E-13 84.8 10.5 48 67-114 173-220 (297)
42 PRK12873 ubiA prenyltransferas 98.6 2.4E-07 5.2E-12 80.2 9.5 92 11-114 123-215 (294)
43 PRK12869 ubiA protoheme IX far 98.6 5.5E-07 1.2E-11 76.4 11.3 89 12-114 114-204 (279)
44 TIGR01473 cyoE_ctaB protoheme 98.6 2.5E-07 5.3E-12 78.2 8.8 93 8-114 108-203 (280)
45 PRK04375 protoheme IX farnesyl 98.4 9.4E-07 2E-11 75.6 8.3 84 17-114 127-212 (296)
46 PRK13362 protoheme IX farnesyl 98.3 5.2E-06 1.1E-10 72.0 9.9 85 17-114 130-215 (306)
47 PRK08238 hypothetical protein; 95.8 0.023 5E-07 52.3 6.4 83 4-102 294-377 (479)
48 PRK12324 phosphoribose diphosp 94.4 0.13 2.9E-06 44.7 6.6 43 5-52 115-158 (295)
49 KOG4581 Predicted membrane pro 91.5 0.16 3.5E-06 44.3 2.9 58 82-139 242-304 (359)
50 PLN02776 prenyltransferase 83.4 25 0.00055 31.5 11.7 79 18-114 113-198 (341)
51 PRK13592 ubiA prenyltransferas 78.6 4.2 9E-05 36.0 5.0 23 79-101 56-78 (299)
52 PRK12884 ubiA prenyltransferas 56.6 31 0.00066 28.9 5.6 33 78-111 46-78 (279)
53 PF01040 UbiA: UbiA prenyltran 55.0 45 0.00099 26.6 6.1 21 80-100 34-54 (257)
54 PRK12324 phosphoribose diphosp 54.3 31 0.00067 30.1 5.4 24 77-100 54-77 (295)
55 PRK09573 (S)-2,3-di-O-geranylg 53.1 44 0.00095 28.2 6.0 33 78-111 46-78 (279)
56 PRK13362 protoheme IX farnesyl 52.4 1.1E+02 0.0023 26.7 8.4 34 78-111 56-90 (306)
57 PRK13591 ubiA prenyltransferas 49.3 98 0.0021 27.4 7.7 37 59-100 53-89 (307)
58 PRK12887 ubiA tocopherol phyty 48.6 58 0.0012 28.3 6.2 23 88-111 72-94 (308)
59 COG0382 UbiA 4-hydroxybenzoate 45.2 45 0.00098 28.2 4.9 41 71-111 49-90 (289)
60 KOG1381 Para-hydroxybenzoate-p 44.8 40 0.00086 30.3 4.5 76 82-158 237-317 (353)
61 TIGR02056 ChlG chlorophyll syn 43.9 50 0.0011 28.5 5.1 31 79-110 64-94 (306)
62 PRK12882 ubiA prenyltransferas 43.1 48 0.001 27.8 4.7 30 81-111 50-79 (276)
63 PRK12883 ubiA prenyltransferas 42.3 74 0.0016 26.7 5.7 29 82-111 50-78 (277)
64 TIGR01476 chlor_syn_BchG bacte 40.7 48 0.001 27.9 4.4 30 80-110 49-78 (283)
65 PRK10034 fructuronate transpor 38.7 92 0.002 28.9 6.2 75 29-114 22-100 (447)
66 PRK10472 low affinity gluconat 37.4 1E+02 0.0023 28.5 6.3 38 5-47 4-41 (445)
67 cd00867 Trans_IPPS Trans-Isopr 37.2 20 0.00042 28.7 1.4 30 85-114 162-201 (236)
68 PRK12875 ubiA prenyltransferas 35.5 1.3E+02 0.0029 25.8 6.3 19 86-104 62-80 (282)
69 TIGR01475 ubiA_other putative 34.2 1.1E+02 0.0023 25.9 5.4 24 77-100 44-67 (282)
70 PRK12869 ubiA protoheme IX far 33.9 89 0.0019 26.5 5.0 26 76-101 43-68 (279)
71 PLN00012 chlorophyll synthetas 33.9 99 0.0022 27.9 5.5 32 79-111 133-164 (375)
72 PRK07566 bacteriochlorophyll/c 33.5 1.1E+02 0.0023 26.6 5.5 30 81-111 77-106 (314)
73 PRK12872 ubiA prenyltransferas 33.4 1.9E+02 0.0041 24.1 6.8 27 75-101 42-68 (285)
74 TIGR00791 gntP gluconate trans 32.2 1.6E+02 0.0034 26.6 6.5 34 9-47 4-37 (440)
75 TIGR01473 cyoE_ctaB protoheme 28.6 1.4E+02 0.003 25.1 5.3 22 80-101 46-67 (280)
76 PRK11383 hypothetical protein; 28.6 3.1E+02 0.0068 22.0 7.5 83 7-97 44-131 (145)
77 PRK08238 hypothetical protein; 27.3 1.4E+02 0.0029 27.8 5.3 36 77-112 234-270 (479)
78 COG1108 ZnuB ABC-type Mn2+/Zn2 26.3 2.7E+02 0.006 24.1 6.7 64 26-102 33-97 (274)
79 PRK09543 znuB high-affinity zi 24.4 2.9E+02 0.0064 23.2 6.5 20 27-46 25-45 (261)
80 PRK12847 ubiA 4-hydroxybenzoat 24.3 1.9E+02 0.0042 24.4 5.4 31 81-111 57-88 (285)
81 TIGR01474 ubiA_proteo 4-hydrox 24.1 1.9E+02 0.0041 24.5 5.3 30 82-111 53-83 (281)
82 COG2119 Predicted membrane pro 23.7 3.1E+02 0.0068 22.9 6.3 33 15-52 21-56 (190)
83 cd00385 Isoprenoid_Biosyn_C1 I 23.0 52 0.0011 24.8 1.5 32 81-112 152-185 (243)
84 PLN02809 4-hydroxybenzoate non 22.7 1.8E+02 0.0039 25.1 4.9 32 82-113 58-90 (289)
85 PRK14984 high-affinity glucona 21.8 2.4E+02 0.0051 26.2 5.8 33 10-47 5-37 (438)
86 PF00950 ABC-3: ABC 3 transpor 20.6 3.6E+02 0.0077 22.8 6.2 21 26-46 24-45 (257)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=2.2e-40 Score=283.54 Aligned_cols=158 Identities=37% Similarity=0.674 Sum_probs=149.9
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHH
Q 031336 2 SGSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSI 80 (161)
Q Consensus 2 ~~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (161)
.|++++++++..++++|++||+|+||+||||+|+++++|+.++|++ +++|+|.|+++++++++..+++++++.++++++
T Consensus 88 ~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~ 167 (280)
T PLN02878 88 VGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCF 167 (280)
T ss_pred HChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999 999999999999999988888899999889999
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH--Hhhhchhhhhhhhccccc--ccccccc
Q 031336 81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL--RMCSYSWGFLVFHDKQAC--HHNWPQH 152 (161)
Q Consensus 81 fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~--~~~~~~~~~~~~~~g~~~--~~~~~~~ 152 (161)
|+.+++++||+||+||||++|+||+|+++|+|++ |.+++.+ |+.+++ ++++..|+++.+.+||+. ..+|.|+
T Consensus 168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs 247 (280)
T PLN02878 168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRA 247 (280)
T ss_pred HHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 9999999 998877 888889999999999999 9999999
Q ss_pred ccccccc
Q 031336 153 TCFDFVD 159 (161)
Q Consensus 153 ~~~~~~~ 159 (161)
+.+|+.+
T Consensus 248 ~~vD~~s 254 (280)
T PLN02878 248 QSVDLSS 254 (280)
T ss_pred HhcCccc
Confidence 9999865
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.96 E-value=1.9e-29 Score=216.97 Aligned_cols=155 Identities=27% Similarity=0.430 Sum_probs=138.8
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031336 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (161)
Q Consensus 3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f 81 (161)
.|++.++..+++++++++||. ||+|+||+|+++++|++.++|+ +++|.+.|.++. .+++..+++++++++++..++
T Consensus 118 ~~~~~~~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 194 (308)
T PRK12887 118 LGPWLLITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVF 194 (308)
T ss_pred HhHHHHHHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHH
Confidence 467888889999999999995 9999999999999999999999 899998876643 455567788888999999999
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH--Hhhhchhhhhhhhccccc--cccccccc
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL--RMCSYSWGFLVFHDKQAC--HHNWPQHT 153 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~--~~~~~~~~~~~~~~g~~~--~~~~~~~~ 153 (161)
+.+++++||+||+||||+.|+||+|+++|+|++ |++++.+ |+..++ +.....+++..+..||.. .++|.|++
T Consensus 195 ~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK12887 195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ 274 (308)
T ss_pred HHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 8888888 988777 677788888889999999 99999999
Q ss_pred ccccccC
Q 031336 154 CFDFVDS 160 (161)
Q Consensus 154 ~~~~~~~ 160 (161)
.+|+-|.
T Consensus 275 ~~~~~~~ 281 (308)
T PRK12887 275 RVDLQDK 281 (308)
T ss_pred hcCcccc
Confidence 9998764
No 3
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.74 E-value=2.2e-17 Score=142.52 Aligned_cols=97 Identities=26% Similarity=0.371 Sum_probs=71.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
++..+....++++++++||. ||+|+|++|+++++|.. .-++ +..+ ..+.+.+. ....+ ....+++
T Consensus 117 ~~~~~~l~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~~-~~g~p~~~~------~~~~g~~~---~~~~l--~a~~~w~ 182 (292)
T PRK13595 117 PPAATLLLLLYAALFVGYSL--PPLRFKARPFLDGLSNA-AYALPLALP------ALALGAPV---PWPPL--LALMAWS 182 (292)
T ss_pred hHHHHHHHHHHHHHHHHHcc--CccchhcCcchhHHHHH-HHHHHHHHH------HHHcCCcc---hHHHH--HHHHHHH
Confidence 34555666788899999995 99999999999999953 3343 2222 12233321 21222 2334677
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
.+.+++||+||+||||+.|+||+|+++|+|++
T Consensus 183 ~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a 214 (292)
T PRK13595 183 VGKHAFDAAQDIPADRAAGTRTVATTLGVRGT 214 (292)
T ss_pred HHHHHHHhccChHhHHHcCCeechHHhCcHhH
Confidence 99999999999999999999999999999999
No 4
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.71 E-value=1e-16 Score=137.35 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=80.2
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031336 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (161)
Q Consensus 3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f 81 (161)
++|+.++...++++.++.||. ||.|+|++|+.++++.+..-.. ..+|.+. .+. .++.+.+..+....++
T Consensus 103 ~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~------~~~--~~~~~~~l~~~~~~~~ 172 (282)
T PRK13105 103 GSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLVL------AGA--PFTAALWAVLAAFFLW 172 (282)
T ss_pred hhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHHH------hhc--cccHHHHHHHHHHHHH
Confidence 356666777799999999995 9999999999998665544433 3333321 122 2344567777888888
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+++++||+||+||||+.|+||+|+++|+|++
T Consensus 173 ~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a 205 (282)
T PRK13105 173 GMASHAFGAVQDVVADREAGIASIATVLGARRT 205 (282)
T ss_pred HHHHHHHHhCcchHhHHHcCCccchHHhcHHHH
Confidence 999999999999999999999999999999999
No 5
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.68 E-value=4.2e-16 Score=130.46 Aligned_cols=102 Identities=30% Similarity=0.499 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCcc-ccccchhhhHHHHHHHhhh-h-hhHHHHhHHHHhhcCCCCChHHHHHHHHHHH
Q 031336 3 GSPPLLLNQILFFLCGCAYSLPLPFL-RWKSHTFMAPLCLVITMGL-T-GLPFYMHTQQYVLGRPFVITRPLILMGAIMS 79 (161)
Q Consensus 3 ~s~~l~~~~~l~l~lg~~YS~~~PPl-RlKr~p~la~l~I~~v~gl-v-~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (161)
++++.++..+++.++++.||. ||. |+||.|.+++.++....|. . ..+++.. + ..++.+.+..+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~------~--~~~~~~~~~~~~~~f 171 (285)
T PRK12872 102 GGPKFALIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY------Q--LTIFSLLLLYAVFIF 171 (285)
T ss_pred ccHHHHHHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc------c--cccchHHHHHHHHHH
Confidence 467777788889999999995 666 6999999999999988877 3 3343321 1 123445566677777
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 80 IFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 80 ~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+..+..+++||+||+||||+.|+||+|+++|+|++
T Consensus 172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t 206 (285)
T PRK12872 172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT 206 (285)
T ss_pred HHHHHHHHHHhcccchhHHHcCCcccchhcchHHH
Confidence 88899999999999999999999999999999999
No 6
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.68 E-value=2.8e-16 Score=132.38 Aligned_cols=108 Identities=21% Similarity=0.341 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
+..+...+++++++++||. ||+|+||++++++..+...-+. +..++ .+.+ + ++.+.++.+..+++++
T Consensus 106 ~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~------~~~~-~--~~~~~~~~~~~~~l~~ 174 (283)
T TIGR01476 106 WLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH------AIFA-P--LTWQSVVVALIYSLGA 174 (283)
T ss_pred HHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH------HHhC-C--CCHHHHHHHHHHHHHH
Confidence 3435555678889999995 9999999998887654443222 22222 1122 2 3444567778888999
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YD 123 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~ 123 (161)
++++..||++|+||||+.|+||+|+++|+|++ +..++.+ |.
T Consensus 175 ~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~ 219 (283)
T TIGR01476 175 HGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQA 219 (283)
T ss_pred HHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 4444444 53
No 7
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.67 E-value=6.7e-16 Score=132.50 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
+++.++..+++++++++||. ||+|+||++++++..+...-+. ...+. + .+. .+++...+..++.+.+++
T Consensus 127 ~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~~~~~~~--~---a~~---g~~~~~~~l~~~~~~l~~ 196 (306)
T TIGR02056 127 FPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASYIALPWWAG--H---ALF---GELNPDIAVLTLIYSIAG 196 (306)
T ss_pred chHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHHHHHHHHH--H---HHh---CCCcHHHHHHHHHHHHHH
Confidence 45666677788999999996 9999999999988664443332 11111 1 112 234455677888888999
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
.++++.||++|+||||+.|+||+|+++|+|++
T Consensus 197 ~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a 228 (306)
T TIGR02056 197 LGIAIVNDFKSVEGDRALGLQSLPVAFGIETA 228 (306)
T ss_pred HHHHHHHHccChHHHHHcCCcCcchhcChHHH
Confidence 99999999999999999999999999999999
No 8
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.67 E-value=5.4e-16 Score=135.27 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031336 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (161)
Q Consensus 5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~ 83 (161)
+.+++..+++++++++||. ||+|+||+++++...+...-+. ...+. ..+.+ .++.+.+++++...+++.
T Consensus 125 ~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~~~-----~a~~g---~~~~~~~~l~~~~~l~~~ 194 (331)
T PRK12392 125 MVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFITFLSA-----NALFS---DIRPEVVWLAGLNFFMAI 194 (331)
T ss_pred HHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHHHHHHHHH-----HHHhc---CCCHHHHHHHHHHHHHHH
Confidence 3445556688999999996 9999999998876653332232 11111 12233 244556677788888999
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+++||+||+||||+.|+||+|+++|+|++
T Consensus 195 ~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a 225 (331)
T PRK12392 195 ALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT 225 (331)
T ss_pred HHHHHHcccchhhHHHcCCeeeEeEEcHhhH
Confidence 9999999999999999999999999999999
No 9
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.64 E-value=1.4e-15 Score=134.87 Aligned_cols=109 Identities=23% Similarity=0.379 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhhhhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~glv~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~ 83 (161)
++..++..+++++++++||. ||+++||++++++..+-..-+. ++++.. ..+.+ .++...+.+++++.+++.
T Consensus 196 ~~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~~~--lp~~~g--~a~~g---~~s~~~illal~~~l~~l 266 (375)
T PLN00012 196 FPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYIS--LPWWAG--QALFG---TLTPDVVVLTLLYSIAGL 266 (375)
T ss_pred cHHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHHHH--HHHHHH--HHHcC---CCCHHHHHHHHHHHHHHH
Confidence 34445555678889999996 9999999999988664333322 122111 11222 344556777888889999
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH
Q 031336 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ 121 (161)
Q Consensus 84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~ 121 (161)
+++++||++|+||||+.|++|+|+++|+|++ +..++.+
T Consensus 267 ai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l 307 (375)
T PLN00012 267 GIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDI 307 (375)
T ss_pred HHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4444444
No 10
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.62 E-value=5.2e-15 Score=124.87 Aligned_cols=114 Identities=23% Similarity=0.205 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
+++.++..+++++++++||. ||.|+|+++ ++...+....|. ...+-+. .++ ..++.+.++.++...+++
T Consensus 112 ~~~~~~~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~~~~~~~~-~~~------~~~~~~~~~~~l~~~l~~ 181 (293)
T PRK06080 112 GWWLLLLGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLVIVLGTYY-LQA------GTVDSAVFLPALPCGLLI 181 (293)
T ss_pred hHHHHHHHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHHHHHHHHH-Hhc------CCCCHHHHHHHHHHHHHH
Confidence 45666777788999999995 999999988 677666655665 3333221 121 234456788889999999
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL 127 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~ 127 (161)
..+.+.||++|+||||+.|+||+|+++|+|++ +..+..+ |...+.
T Consensus 182 ~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~ 230 (293)
T PRK06080 182 GAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVL 230 (293)
T ss_pred HHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 4444444 654444
No 11
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.59 E-value=1e-14 Score=126.00 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031336 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (161)
Q Consensus 3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f 81 (161)
.+|+++...++|+++++.||. ||+|+|++| +|-..+...-|. ...|-+ +.|+ ..++...+..++.+.+.
T Consensus 117 ~g~~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~-yv~t------~~~~~~~~~~sl~~gll 186 (304)
T PRK07419 117 SDWTVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPLAVAAAL-YSQT------PSWSLIPLAASIILGLA 186 (304)
T ss_pred hcHHHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHHHHHHHH-HHhc------CCCCHHHHHHHHHHHHH
Confidence 468888888899999999996 999999999 687776666666 444433 2222 34556678888999999
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL 127 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~ 127 (161)
+..+...|+++|+|.||+.|.||+|+++|+|++ ...+... |...+.
T Consensus 187 ~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~ 236 (304)
T PRK07419 187 TSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELL 236 (304)
T ss_pred HHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 4444444 655444
No 12
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.58 E-value=1.3e-14 Score=125.05 Aligned_cols=102 Identities=23% Similarity=0.349 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f 81 (161)
+++.++..+++++++++||. ||+++||++++++..+....+. ...|.. +.+ +..++...++.+..+.+.
T Consensus 131 ~~~~~~l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~------~~~-~~~~~~~~~l~~~~~~l~ 201 (314)
T PRK07566 131 GPWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAA------AFG-AGLPSWPIVILALLYSLG 201 (314)
T ss_pred ChHHHHHHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHHHH------Hhc-cCCCCHHHHHHHHHHHHH
Confidence 45556666688889999996 9999999999887765554432 233322 122 123445567777888888
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+++..||++|+|+||+.|+||+|+++|+|++
T Consensus 202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a 234 (314)
T PRK07566 202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNA 234 (314)
T ss_pred HHHHHHHHHHHHhHhHHHcCCcccceeEcHHHH
Confidence 999999999999999999999999999999988
No 13
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.58 E-value=1.8e-14 Score=123.18 Aligned_cols=115 Identities=15% Similarity=0.047 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031336 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (161)
Q Consensus 3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f 81 (161)
.+|+++...+++++.++.||. ||+++|++| +|-..+....|. ...|-+ +.|+ ..++.+.+..++...+.
T Consensus 104 ~~~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~-yvqt------~~~~~~~~l~sl~~gl~ 173 (285)
T TIGR02235 104 WQITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL-YAQS------QSFSLIPWKASILVGLA 173 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH-HHhC------CcCcHHHHHHHHHHHHH
Confidence 357788888899999999996 999999999 577776666666 333332 2232 34556678889999999
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL 127 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~ 127 (161)
+..+...|+++|+|.||+.|.||+|+++|+|++ ...++.. |...+.
T Consensus 174 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~ 223 (285)
T TIGR02235 174 TTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLI 223 (285)
T ss_pred HHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 4444444 654444
No 14
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.56 E-value=6.6e-14 Score=119.80 Aligned_cols=93 Identities=22% Similarity=0.333 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 031336 9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL 87 (161)
Q Consensus 9 ~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i 87 (161)
..++..++++++||. ||+|+|++|+.+..+ ..+-.+ +..+++. + . ..+++..++++. .+++.++++
T Consensus 117 ~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~-~g~~~~~~~~~y~~--~----t--g~~~~~~l~~a~--~l~~~~~~~ 183 (282)
T PRK12875 117 PALLAFLVLSVEYSA--PPLRFKTTPVLDSLS-NGLYILPGVAAYAL--V----S--GSLPPLLAVAGG--WLWAMGMHT 183 (282)
T ss_pred HHHHHHHHHHHHHcC--CCccchhccHHHHHH-HHHHHHHHHHHHHH--H----c--CCCcHHHHHHHH--HHHHHHHHH
Confidence 344567899999996 999999999877543 111112 2233321 1 1 234555444444 478999999
Q ss_pred HhcCCChhhhHhcCCccchhhhchhHH
Q 031336 88 LKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 88 ~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+||++|+|+||+.|+||+|+++|+|++
T Consensus 184 in~i~Die~D~~aGi~Tlav~lG~~~a 210 (282)
T PRK12875 184 FSAIPDIEPDRAAGIRTTATVLGERRT 210 (282)
T ss_pred HHhccCHHHHHHcCCccchhhccHhhH
Confidence 999999999999999999999999998
No 15
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.55 E-value=3.8e-14 Score=122.74 Aligned_cols=121 Identities=18% Similarity=0.098 Sum_probs=86.2
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHh-------hcCC-----CCCh-
Q 031336 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYV-------LGRP-----FVIT- 68 (161)
Q Consensus 3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~-------~~~~-----~~~~- 68 (161)
.+|+++...++++++++.||. ||+++|++| +|...+....|. ...|-+. .|+.- ++++ ..++
T Consensus 112 ~g~~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~v~g~~y-v~t~~~~~~~~~~~~~~~~~~~~~~~ 187 (317)
T PRK13387 112 TSWLLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGIFLLAVY-INTNTITIESLLFQGEMFTIQGNLIA 187 (317)
T ss_pred hcHHHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHHHHHHHH-HhcCCCchHHHHhcccchhhcchhHH
Confidence 457778788899999999996 999999999 898877777776 4444321 22210 1100 0000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031336 69 -RPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL 127 (161)
Q Consensus 69 -~~l~~~~~~~~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~ 127 (161)
-+++..++...+....++..|+++|+|+||+.|.||+|+++|+|++ ...+... |...+.
T Consensus 188 ~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~ 251 (317)
T PRK13387 188 IIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAV 251 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHH
Confidence 0123478888889999999999999999999999999999999999 3333333 654333
No 16
>PLN02922 prenyltransferase
Probab=99.55 E-value=4.7e-14 Score=122.33 Aligned_cols=121 Identities=18% Similarity=0.261 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhh-cCCC---CChHHHHHHHHH
Q 031336 3 GSPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVL-GRPF---VITRPLILMGAI 77 (161)
Q Consensus 3 ~s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~-~~~~---~~~~~l~~~~~~ 77 (161)
++|++++..++|++.++.||. ||+++|++| +|=..+...-|. ...|.| +.|+..+ +.+. .++.+.+..++.
T Consensus 121 ~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l~v~g~y-~~~~~~~~~~~~~~~~~~~~~~l~slp 196 (315)
T PLN02922 121 GNIRVILLLAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPLATTAFY-LALASGAGGSEMAILPLTPTVLSASVL 196 (315)
T ss_pred cChHHHHHHHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHHHHHHHH-HHhcccccccccccccccHHHHHHHHH
Confidence 568888888899999999996 999999999 554444444454 334433 2232101 1111 245567889999
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031336 78 MSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL 127 (161)
Q Consensus 78 ~~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~ 127 (161)
+.+.+..+...|+++|+|.||+.|.||+|+++|+|++ ..+++.. |...+.
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~ 250 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAA 250 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 4444444 654444
No 17
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.52 E-value=1.3e-13 Score=117.95 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 031336 6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (161)
Q Consensus 6 ~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~ 84 (161)
+++...+++++.++.||. ||+|+|+++ +|-..+....|. ...|-+. .|+ ..++...+..++...+.+..
T Consensus 110 ~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g~~y-vq~------~~~~~~~ll~sl~~g~l~~~ 179 (284)
T TIGR00751 110 WFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLGTQY-LQA------HRVDWVGILPAVATGLLACA 179 (284)
T ss_pred HHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHHHHH-Hhc------CCCCHHHHHHHHHHHHHHHH
Confidence 556666789999999996 999999999 787777777766 4444432 232 23445556778888899999
Q ss_pred HHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031336 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL 127 (161)
Q Consensus 85 i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~ 127 (161)
++..|+++|+|+||+.|.||+|+++|+|++ ..+++.. |...+.
T Consensus 180 il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~ 226 (284)
T TIGR00751 180 VLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV 226 (284)
T ss_pred HHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 4444444 644443
No 18
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.51 E-value=4.3e-14 Score=114.03 Aligned_cols=100 Identities=36% Similarity=0.516 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
+++.+...+++.+++++|| ||+|+||++++++.++....++ ...|.+. .+ ..++.+.+..+.+..++.
T Consensus 91 ~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~ 159 (257)
T PF01040_consen 91 GPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AG--GDPPPPPFLLAIFFFLLI 159 (257)
T ss_pred CchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cC--CcccHHHHHHHHHHHHHH
Confidence 4566666778888889999 9999999999999998888777 6666543 12 123455677777778889
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+...+|++|+||||+.|.||+|+++|+|++
T Consensus 160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~ 191 (257)
T PF01040_consen 160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKA 191 (257)
T ss_pred HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999
No 19
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.50 E-value=1.9e-13 Score=118.93 Aligned_cols=109 Identities=27% Similarity=0.275 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCC--CC--ccccccchhhhHHHHHHHhhhhhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 031336 11 QILFFLCGCAYSLP--LP--FLRWKSHTFMAPLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNG 86 (161)
Q Consensus 11 ~~l~l~lg~~YS~~--~P--PlRlKr~p~la~l~I~~v~glv~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~ 86 (161)
.+++.+.++.||.- .+ |+|+|+.+.++++.+....|.+..|.. ... . ..+. +...+.++.....++++
T Consensus 125 ~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~---g~~--~--~~~~-~~~~i~l~~~~~l~~~~ 196 (307)
T PRK13591 125 AFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA---GSY--C--GSLI-PVGLIFLFFGVKLFINS 196 (307)
T ss_pred HHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH---Hhh--h--hhHH-HHHHHHHHHHHHHHHHH
Confidence 46888899999951 11 459999999999998888886222211 100 0 0111 11233334444557888
Q ss_pred HHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031336 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL 127 (161)
Q Consensus 87 i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~ 127 (161)
++||++|+||||+.|.||+|+++|+|++ ..++..+ |+..+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~ 241 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGI 241 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 4444444 544444
No 20
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.49 E-value=2.4e-13 Score=116.10 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
+++.+...++++++++.||. ||+|+|+.+ +|-..+....|. ..+|.+.. ++. .++.+.+..+....+.+
T Consensus 115 ~~~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~~~vlg~~~~-~~~------~~~~~~~~~sl~~~l~~ 184 (296)
T PRK05951 115 GIGAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSHMLVMGLIYV-WLG------NLSSPNLLAGVPLGLLM 184 (296)
T ss_pred cHHHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-HhC------cccHHHHHHHHHHHHHH
Confidence 45566666789999999996 999999876 777666666665 55554422 221 22344566777788888
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
..+...|+++|+|+||+.|+||+|+++|+|++
T Consensus 185 ~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a 216 (296)
T PRK05951 185 ALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA 216 (296)
T ss_pred HHHHHHCCCccchhHHHCCCeeeeeeEcHhhH
Confidence 89999999999999999999999999999999
No 21
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.47 E-value=4.5e-13 Score=112.24 Aligned_cols=97 Identities=27% Similarity=0.422 Sum_probs=75.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
|+..++..+++++++++||. ++||++++++.++....++ ...|... .+.+ +.+.+.+.....+++
T Consensus 103 ~~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~------~~~~---~~~~~~l~~~~~~~~ 168 (279)
T PRK12884 103 SPLAFLVVILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA------VGEL---NEAVILLAAMAFLMT 168 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH------hCCC---chHHHHHHHHHHHHH
Confidence 45555666778889999994 8999999998888777776 5555431 1211 123455566667788
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
.+.++.||++|+||||+.|+||+|+++|+|++
T Consensus 169 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~ 200 (279)
T PRK12884 169 LGREIMKDIEDVEGDRLRGARTLAILYGEKIA 200 (279)
T ss_pred HHHHHHHHhhhhhhHHHcCCeeechHhcHHHH
Confidence 88899999999999999999999999999999
No 22
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.45 E-value=6e-13 Score=111.81 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031336 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (161)
Q Consensus 5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~ 83 (161)
+..++...++++++++||. |+||+|.+++.++....|. ...|... .+.. . +.+.+.+.....+..+
T Consensus 105 ~~~~~~~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~------~~~~-~-~~~~~~l~~~~fl~~~ 171 (276)
T PRK12882 105 PLCLAIALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA------VGTE-G-LLALLVLFALAALATL 171 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH------hccc-c-hHHHHHHHHHHHHHHH
Confidence 3334445567778999995 9999999999887777775 4445321 2211 1 1222344445555677
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+++||+||+||||+.|+||+|+++|+|++
T Consensus 172 ~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t 202 (276)
T PRK12882 172 AREIIKDVEDIEGDRAEGARTLPILIGVRKA 202 (276)
T ss_pred HHHHHhhhhhhhhHHHcCCccccHHhhHHHH
Confidence 8899999999999999999999999999999
No 23
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.40 E-value=2.9e-12 Score=108.46 Aligned_cols=96 Identities=25% Similarity=0.343 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031336 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (161)
Q Consensus 5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~ 83 (161)
+..++....++++.++|. ++||.+.+++.++..+.++ ...|+... .+ ..+.+.+++.+...+++.
T Consensus 116 ~~~~~l~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a~-----~~---~~~~~~~~l~~~~~l~~~ 181 (289)
T COG0382 116 PLAFLLSLAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGAAAV-----GG---SLPLLAWLLLLAAILWTL 181 (289)
T ss_pred HHHHHHHHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHHHHH-----hC---ccchHHHHHHHHHHHHHH
Confidence 334566678999999994 9999999999998888888 77776432 22 244556788888899999
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+++||+||+||||+.|+||+|+.+|+|++
T Consensus 182 ~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a 212 (289)
T COG0382 182 GYDIIYAIQDIEGDRKAGLKSLPVLFGIKKA 212 (289)
T ss_pred HHHHHHhccCccchHhcCCcchHHHhCchhH
Confidence 9999999999999999999999999999999
No 24
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.38 E-value=3.5e-12 Score=107.49 Aligned_cols=95 Identities=22% Similarity=0.202 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 031336 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF 83 (161)
Q Consensus 5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~ 83 (161)
+..+...+++.+++++||. ++||++.+++..+....|. ...|.... +. .. . .+.+.....+++.
T Consensus 104 ~~~~~l~~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~------~~--~~-~-~~~l~~~~f~~~~ 168 (279)
T PRK09573 104 IYAFLIALLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV------FN--VL-R-IIILFLCAFFSTW 168 (279)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH------cc--ch-H-HHHHHHHHHHHHH
Confidence 4444455577888999994 8999999999999888887 66665421 11 11 2 2334445556778
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 84 VNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 84 ~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
++++.||+||+|+||+.|+||+|+++|+|++
T Consensus 169 ~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a 199 (279)
T PRK09573 169 SREIVKDIEDIEGDLKENVITLPIKYGIKKS 199 (279)
T ss_pred HHHHHhhhhhhhhHHHCCCccccHHhhHHHH
Confidence 8999999999999999999999999999998
No 25
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.32 E-value=9.4e-12 Score=105.03 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 031336 12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD 90 (161)
Q Consensus 12 ~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KD 90 (161)
.++.++.++|+ .+||+..++.+......+. +..|+.. .+.......+.+.+.....+++.+.+++||
T Consensus 112 ~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a------~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~ 179 (282)
T TIGR01475 112 PLVLLVLIIYP------YTKRFTFLCHYVLGSTYGLAPLAGWVA------VIGTISFFLVAWLLGIGVGFWIAGFDLIYA 179 (282)
T ss_pred HHHHHHHHHHh------hHhccccccHHHHHHHHHHHHHHHHHH------HhCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788998 4799999998876666666 6666532 111122112234556666778888999999
Q ss_pred CCChhhhHhcCCccchhhhchhHH
Q 031336 91 LPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 91 i~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
++|+||||+.|+||+|+++|+|++
T Consensus 180 ~~D~e~D~~~G~~tlpv~~G~~~a 203 (282)
T TIGR01475 180 IQDYEFDRKNGLHSIPARFGIKAA 203 (282)
T ss_pred HhhHHhHHHcCCCchHHHhchHHH
Confidence 999999999999999999998888
No 26
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.31 E-value=2e-11 Score=102.67 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=69.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
++..+...+++.+++++|+. |+||.+.+++..+..+.|. ...|... .+ ...++ .+ ...+..++.
T Consensus 103 ~~~~~~~~~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a------~~-~~~~~--~~-~~~~~fl~~ 167 (277)
T PRK12883 103 NIEAFLFALGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA------VG-RIGLA--GY-LAICAFLVN 167 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH------hc-cccHH--HH-HHHHHHHHH
Confidence 34445555677888999994 8999999898888888776 4444321 11 12222 11 122344456
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+++.||++|+||||+.|+||+|+++|+|++
T Consensus 168 ~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a 199 (277)
T PRK12883 168 VAREIMKDIEDIEGDKAKGAKTLPIIIGKKRA 199 (277)
T ss_pred HHHHHHhhhhhhccHHHcCCcCcChHhcHHHH
Confidence 78899999999999999999999999999988
No 27
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.24 E-value=4.5e-11 Score=101.18 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=70.3
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
++..+...++++++.+.|+ -.||...++.......-++ ...|+.. ... .++.+.+++.....+++
T Consensus 113 ~~~~~~~~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~l~~~~a------~~g--~~~~~~~~l~~~~~~w~ 178 (285)
T PRK12847 113 NKTTIYLSFIAVILIVLYP------LMKRFFYWPQLFLGFTFNMGILMAFAA------VQN--QLDIEAILLYIGCIFWT 178 (285)
T ss_pred hHHHHHHHHHHHHHHHhcc------ccccCCcccHHHHHHHHHHHHHHHHHH------HcC--CCcHHHHHHHHHHHHHH
Confidence 3455566667888899998 3888887776543333333 3344322 222 23344566777788899
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
.+.+++++++|+|+|++.|++|+|+++|+|++
T Consensus 179 ~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a 210 (285)
T PRK12847 179 IGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTR 210 (285)
T ss_pred HHHHHHHHhccHhhHHHcCCchhHHHhccccH
Confidence 99999999999999999999999999999988
No 28
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.18 E-value=1.9e-10 Score=99.29 Aligned_cols=96 Identities=23% Similarity=0.196 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 031336 12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD 90 (161)
Q Consensus 12 ~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KD 90 (161)
.+++++...|+ .+||+..+++..+....++ +..|+..............++.+.+.+.....+++.+.+++||
T Consensus 125 ~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya 198 (300)
T PRK13106 125 PIVALIAMSYP------YMKRYTAFANYHLASIQGLAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNH 198 (300)
T ss_pred HHHHHHHHHHh------HHhcCCcchHHHHHHHHHHHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677887 5899999999888888777 6667643211000000001112223334445668888999999
Q ss_pred CCChhhhHhcCCccchhhhchhHH
Q 031336 91 LPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 91 i~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
++|+|+||+.|+||+|+++| |++
T Consensus 199 ~~D~e~D~~~Gi~Slpv~~G-~~a 221 (300)
T PRK13106 199 IPDAEFDREMGLHSFAVVLG-KWA 221 (300)
T ss_pred ccchhhHHHCCCCccHHHHh-hhH
Confidence 99999999999999999999 777
No 29
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.17 E-value=1.6e-10 Score=98.77 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 031336 11 QILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLK 89 (161)
Q Consensus 11 ~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~K 89 (161)
..+++++..+|+ ..||+..++........++ ...|+.. ... .++.+.+.+.+...+++.+.++++
T Consensus 114 ~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~~l~g~~a------~~g--~~~~~~~ll~~~~~~w~~~~~~i~ 179 (284)
T PRK12888 114 APLAVAPLVVYP------YAKRFTNFPHAILGLAQAVGPVGAWIA------VTG--TWSWPAVLLGLAVGLWIGGFDLIY 179 (284)
T ss_pred HHHHHHHHHHHH------HhhcccchhhHHHHHHHHHHHHHHHHH------HcC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 335566677897 6799888886665555555 5555432 112 233344566777788999999999
Q ss_pred cCCChhhhHhcCCccchhhhchhHH
Q 031336 90 DLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 90 Di~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+++|.|+||+.|+||+|+++|+|++
T Consensus 180 a~~D~e~D~~~Gv~sl~v~~G~~~a 204 (284)
T PRK12888 180 ACQDAEVDRRIGVRSVPARFGVRAA 204 (284)
T ss_pred HhhhHHHHHHCCCcCcchhhCchhH
Confidence 9999999999999999999999988
No 30
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.17 E-value=1.8e-10 Score=98.85 Aligned_cols=140 Identities=17% Similarity=0.097 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 031336 6 PLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (161)
Q Consensus 6 ~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~ 84 (161)
..+....+++++.++|+ .+||+..++........+. ...|+. ++.++ .. +.+...+.....+++.+
T Consensus 115 ~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~l~g~~-----av~g~-~~-~~~~~~l~~~~~~W~~~ 181 (289)
T PLN02809 115 YSRILGASSLLLVFTYP------LMKRFTFWPQAFLGLTFNWGALLGWA-----AVKGS-LD-PAVVLPLYASGVCWTLV 181 (289)
T ss_pred HHHHHHHHHHHHHHHHh------HHHhcCcchHHHHHHHHHHHHHHHHH-----HHhCC-CC-hHHHHHHHHHHHHHHHH
Confidence 33445557778889998 4999999987653333333 333431 22232 12 12222234444456777
Q ss_pred HHHHhcCCChhhhHhcCCccchhhhchhHH-HHH-HHHH-HHHHHHHhhhchhhhhhhhccccc--cccccccccccccc
Q 031336 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKV-GVS-TLRQ-YDVSGLRMCSYSWGFLVFHDKQAC--HHNWPQHTCFDFVD 159 (161)
Q Consensus 85 i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~-~~~-ll~~-y~~ai~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ 159 (161)
-+++.+.+|+|+||+.|++|+|+++|+|+. .++ +... +..-+.+.....++.... .|+.. .++++|++.+|.-|
T Consensus 182 ~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~v~~~~ 260 (289)
T PLN02809 182 YDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYY-AGLAAAAGHLAWQIQTVDLSS 260 (289)
T ss_pred HHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHHHHHHcCCCC
Confidence 789999999999999999999999999965 222 2222 433222222112222222 23433 67899999999865
No 31
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.14 E-value=4.9e-10 Score=95.07 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
++..+...++++++.+.|+ .+||+..++.......-++ ...|++. +-+ .++.+.+.+.....+++
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g---~~~~~~~ll~~~~~lw~ 173 (281)
T TIGR01474 108 NPLTILLGVASLALVATYP------FMKRITYWPQLVLGLAFGWGALMGWAA-----VTG---DLSTAAWVLYLANILWT 173 (281)
T ss_pred hHHHHHHHHHHHHHHHHhc------hhcccccccHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHH
Confidence 3445556668888899998 4999988876654433444 4455432 112 23333444555667788
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
.+.+++++++|+|+||+.|+||+|+++|+|++
T Consensus 174 ~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~ 205 (281)
T TIGR01474 174 LGYDTIYAMQDKEDDIKIGVKSTALRFGDNTK 205 (281)
T ss_pred HHHHHHHHHhhHHhHHHcCCCcccHHhhhhhH
Confidence 89999999999999999999999999999987
No 32
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.12 E-value=3.7e-10 Score=97.15 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCC
Q 031336 14 FFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLP 92 (161)
Q Consensus 14 ~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~ 92 (161)
.+.+...|+ .+||...+....+-..-|. ...|+.. .+.+..++...+.+.+...+++.+-++++|.+
T Consensus 115 ~~~l~~~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~A------v~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~q 182 (286)
T PRK12895 115 VIFLFIIDP------FLKRYTAWRHIYMGSIIGLGVLAGYLA------VIPAFPYNLLIYIIFISSSLWIAGFDIIYVIP 182 (286)
T ss_pred HHHHHHHHH------HHHhCccccHHHHHHHHHhHHHHHHHH------HcCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444555 8999999988776666666 6666532 22222222223345556667888999999999
Q ss_pred ChhhhHhcCCccchhhhchhHH
Q 031336 93 DVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 93 DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
|+|+||+.|+||+|+++|+|++
T Consensus 183 D~e~D~~~Gv~S~a~~fG~~~~ 204 (286)
T PRK12895 183 DIEYDKINGLKTIMNTYGIKNG 204 (286)
T ss_pred chhhHHHcCCCchHHHHCCccH
Confidence 9999999999999999999988
No 33
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.04 E-value=7e-10 Score=96.52 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=69.5
Q ss_pred HHHHHHHHHHh-----cCCCCccccccchhhhHHHHHHHhhh-hhhH--HHH-hHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031336 11 QILFFLCGCAY-----SLPLPFLRWKSHTFMAPLCLVITMGL-TGLP--FYM-HTQQYVLGRPFVITRPLILMGAIMSIF 81 (161)
Q Consensus 11 ~~l~l~lg~~Y-----S~~~PPlRlKr~p~la~l~I~~v~gl-v~~G--~f~-~~~~~~~~~~~~~~~~l~~~~~~~~~f 81 (161)
.++.++..++| +. ++||.++.+|+.+..+.+. +++| ++. -......+.|.. ....+.+++...+.
T Consensus 114 ~i~~~~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~-~~~~~~l~l~afl~ 187 (299)
T PRK13592 114 NVGWFLFLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLL-SLPTVLLAFTMYFP 187 (299)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchh-hHHHHHHHHHHHHH
Confidence 34566678999 87 9999999999999999998 6555 211 011122333221 11113455677778
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+.|+.||+|| |||+++ .+|+|+++|+|++
T Consensus 188 ~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA 218 (299)
T PRK13592 188 SLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKA 218 (299)
T ss_pred HHHHHHHHhhcC-CccccC-CeeechhccchhH
Confidence 899999999999 899975 9999999999998
No 34
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.00 E-value=3e-09 Score=91.26 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 031336 12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKD 90 (161)
Q Consensus 12 ~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KD 90 (161)
+..++...+|+ .+||+..++.......-++ ...|+.. .+. ..+.+.+.+.....+++.+.+++++
T Consensus 123 ~~~~~~~~~Y~------~~KR~t~~~~~~~g~~~~~~~l~G~~a------v~g--~~~~~~~~l~~~~~~w~~~~~~~~a 188 (291)
T PRK12874 123 FPFLIVLGGYS------YFKRFSSLAHLVLGLSLGLAPIAGVVA------VLG--EIPLWSVFLALGVMFWVAGFDLLYS 188 (291)
T ss_pred HHHHHHHHHHh------hhcccccccHHHHHHHHHHHHHHHHHH------HcC--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788898 4899999988776666676 6667542 222 2333334555666789999999999
Q ss_pred CCChhhhHhcCCccchhhhchhHH
Q 031336 91 LPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 91 i~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
++|+|+||+.|++|+|+++|+|++
T Consensus 189 ~~D~~~D~~~Gi~slpv~~G~~~~ 212 (291)
T PRK12874 189 LQDMEFDKKRGLHSIPSKFGEKAT 212 (291)
T ss_pred hccHHHHHHcCCCcccHHhhhHhH
Confidence 999999999999999999999988
No 35
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=98.98 E-value=4.7e-09 Score=91.58 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f 81 (161)
+|.+++.-.++++.|+.|.. +|.++.+.| +|=+......|. +...+|. | ...++...+..++...+.
T Consensus 120 ~~~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vffG~l~v~g~~yi--q------t~~~~~~~ll~slp~gil 188 (303)
T COG1575 120 DWLVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFFGPLIVLGAYYI--Q------TGRLSWAILLPSLPVGIL 188 (303)
T ss_pred hhHHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHHHHHHHHHHHHH--h------cccchHHHHHHHHHHHHH
Confidence 45656777799999999995 999999999 665554444555 3333332 2 234556678889999999
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH---HHHHHHH-HHHHHH
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV---GVSTLRQ-YDVSGL 127 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~---~~~ll~~-y~~ai~ 127 (161)
+..+...|.+.|+|-|++.|.+|+|+++|++++ ..+++.. |...+.
T Consensus 189 ~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~ 238 (303)
T COG1575 189 IANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVI 238 (303)
T ss_pred HHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 3333333 654444
No 36
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.98 E-value=1.8e-09 Score=92.30 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 031336 9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGL 87 (161)
Q Consensus 9 ~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i 87 (161)
+..+.++++.++|+ -.||...++........++ +..|+.. ... .++.+.+.+.+...+++.+.++
T Consensus 119 ~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~l~g~~a------~~g--~~~~~~~~l~~~~~lw~~~~d~ 184 (290)
T PRK12870 119 WLCVAAVPVIFLYP------LAKRVFPVPQLVLAIAWGFAVLISWSA------VTG--HLDLGTWLLWAATVFWTLGFDT 184 (290)
T ss_pred HHHHHHHHHHHHhh------hhhhccccceeeehHHHHhHHHHHHHH------HcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 33445667788997 2677776766554444555 5555532 111 2334445666777889999999
Q ss_pred HhcCCChhhhHhcCCccchhhhchhHH
Q 031336 88 LKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 88 ~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+++++|+|+|++.|++|+|+++|+|++
T Consensus 185 ~~a~~D~e~D~~~G~~slav~~G~~~~ 211 (290)
T PRK12870 185 VYAMSDREDDLRIGVNSSAIFFGRYAP 211 (290)
T ss_pred HHHhhhHhhHHHCCCcchhHHhccccH
Confidence 999999999999999999999999988
No 37
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=98.97 E-value=6.6e-09 Score=89.02 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 031336 10 NQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLL 88 (161)
Q Consensus 10 ~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~ 88 (161)
...+++++..+|+ .+||+..++........++ ...|+.. .... ++.+.+.+.+...++..+.+++
T Consensus 116 l~~~~~~~~~~Y~------~~Kr~t~~~~~~~g~~~~~~~l~g~~a------~~g~--~~~~~~ll~~~~~lw~~~~~~~ 181 (291)
T PRK12886 116 LSPPALFFLLLYS------YCKRFTALAHVVLGFCLALAPLGAWIA------IRGT--IELPAILLGLAVLFWVAGFDIL 181 (291)
T ss_pred HHHHHHHHHHHHh------hhhccccccHHHHHHHHHHHHHHHHHH------HcCC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 3345667788999 4799999987665555565 5555432 2222 2333455555666778888899
Q ss_pred hcCCChhhhHhcCCccchhhhchhHH
Q 031336 89 KDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 89 KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
++++|.|+||+.|+||+|+++|+|++
T Consensus 182 ~a~~D~e~D~~aGi~slpv~~G~~~~ 207 (291)
T PRK12886 182 YALQDLEFDRKEGLHSIPAKLGVNGS 207 (291)
T ss_pred HHhccHHhHHHcCCcCcchhcCchhH
Confidence 99999999999999999999999988
No 38
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=98.94 E-value=7.2e-09 Score=90.06 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChH--HHHHHHHHHHHHHHHH
Q 031336 9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITR--PLILMGAIMSIFAFVN 85 (161)
Q Consensus 9 ~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~--~l~~~~~~~~~fa~~i 85 (161)
+...+++++..+|| .+||+.++........-+. ...|+.. +.+++..+.. ..++.+....+...+-
T Consensus 120 ~l~~~~~~~~~iY~------~~KR~t~~~~~vLGl~~~~~~l~~~~A-----v~~~~~~~~l~~~~~lw~~~~~~~~~g~ 188 (300)
T PRK12876 120 SLAVLSTLLMIIYP------YTKRVTFLCHWILGLVYYLAILMNFFA-----IIETPLSFSLFCMASLWGISFGMIIAAN 188 (300)
T ss_pred HHHHHHHHHHHHHH------hHhcCCchhHHHHHHHHHHHHHHHHHH-----HhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33446777788998 6999999887653333343 4444432 2222222110 1123333444455577
Q ss_pred HHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+++++.+|+|+||+.|+||+|+++|++++
T Consensus 189 DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a 217 (300)
T PRK12876 189 DIIYAIQDLEFDRKEGLFSIPARFGEKKA 217 (300)
T ss_pred HHHHHHcCHhhHHHcCCccchHHHCchhH
Confidence 89999999999999999999999999987
No 39
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=98.88 E-value=1.4e-08 Score=86.11 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 031336 8 LLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNG 86 (161)
Q Consensus 8 ~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~ 86 (161)
++..+++.++.++|+ -.||...++.+......|+ ...|+.. ... .++.+.+.+.....++.....
T Consensus 114 ~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~g~~~~~g~~a------~~~--~~~~~~~~l~~~~~~w~~~~~ 179 (282)
T PRK12848 114 IWLSVAALALAWIYP------FMKRYTHLPQVVLGAAFGWGIPMAFAA------VQG--SVPLEAWLLFLANILWTVAYD 179 (282)
T ss_pred HHHHHHHHHHHHHHH------hHHhcCcccHHHHHHHHHHHHHHHHHH------HhC--CCcHHHHHHHHHHHHHHHHHH
Confidence 344456777789995 3677777776654455565 5555432 222 233444555555666777778
Q ss_pred HHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 87 LLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 87 i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
...+++|.|+||+.|++|+|+++|+|++
T Consensus 180 ~~~a~~D~e~D~~~G~~tlpv~~G~~~~ 207 (282)
T PRK12848 180 TQYAMVDRDDDLKIGIKSTAILFGRYDK 207 (282)
T ss_pred HHHHhccHhhHHHcCCccccHHhccccH
Confidence 8899999999999999999999999988
No 40
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.86 E-value=1.6e-08 Score=87.73 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
+++.+...++++++.+.|+ -.||+..++.......-++ ...|++. + .+. ++.+.+.+.....++.
T Consensus 140 ~~~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~~Gl~~~~~~l~g~~a--~----~g~--~~~~~~~l~~~~~~w~ 205 (314)
T PRK12878 140 NWFAIALGIASLAIVAAYP------FMKRITWWPQFFLGLAFSWGALMGWAA--H----FGS--LSLAAVLLYAGSIAWT 205 (314)
T ss_pred hHHHHHHHHHHHHHHHHHH------HHHhcCCcchHHHHHHHHHHHHHHHHH--H----hCC--CchHHHHHHHHHHHHH
Confidence 4555556667888899997 3888665653322222233 3345432 1 112 2223344445566678
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 83 FVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
.+.+.+++++|.|+||+.|++|+|+++|+|++
T Consensus 206 ~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~ 237 (314)
T PRK12878 206 IGYDTIYAHQDKEDDALIGVKSTARLFGDHTK 237 (314)
T ss_pred HHHHHHHHhhhHhhHHHcCCcccchHhchhhH
Confidence 88889999999999999999999999999988
No 41
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=98.81 E-value=3.8e-08 Score=84.84 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 67 ITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 67 ~~~~l~~~~~~~~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
++...+.......+++...+++||++|.|||++.|+||+|+++|++++
T Consensus 173 ~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t 220 (297)
T PRK12871 173 PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGT 220 (297)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHH
Confidence 344456666777778999999999999999999999999999999988
No 42
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.61 E-value=2.4e-07 Score=80.24 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 031336 11 QILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLK 89 (161)
Q Consensus 11 ~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~K 89 (161)
..++++...+|+ -.||+-.+........-++ ...|+-. ......+....+++.+...+++.+-+++.
T Consensus 123 ~~~~~~~~~~Y~------~~KR~t~~~~~vlg~~~a~~~l~gw~A------v~g~~~~~~~~l~l~~~~~~W~~~~d~iy 190 (294)
T PRK12873 123 AFLALPPILIYP------SAKRWFAYPQAILALCWGFAVLIPWAA------AEGSLNGGWPLLFCWLATLLWTFGFDTVY 190 (294)
T ss_pred HHHHHHHHHHHH------HHHhccccchHHHHHHHHhHHHHHHHH------HhCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 335566778888 2788776665444344455 5556532 22222322233444456667888889999
Q ss_pred cCCChhhhHhcCCccchhhhchhHH
Q 031336 90 DLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 90 Di~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+++|.|+|++.|++|+|+++|++..
T Consensus 191 A~qD~edD~~~Gv~slpv~~G~~~~ 215 (294)
T PRK12873 191 AMADRRDDAKIGLNSSALSLGSNAL 215 (294)
T ss_pred HHHhHhhHHHcCCcccchhcChhhH
Confidence 9999999999999999999998655
No 43
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=98.60 E-value=5.5e-07 Score=76.44 Aligned_cols=89 Identities=12% Similarity=0.167 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 031336 12 ILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLK 89 (161)
Q Consensus 12 ~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~K 89 (161)
+..++..++||. ++||++++ +..+....|- +..|+.. ..+. ++.+.+.+.+...++..+.....
T Consensus 114 ~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~~a------~~g~--~~~~~~ll~~~~~~w~~~~~~~l 179 (279)
T PRK12869 114 LGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAGYAS------GTGS--LDLEAVLLSFLIYLWTPGHIWSL 179 (279)
T ss_pred HHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHHHHH------HhCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788884 89999974 6666666554 4444432 1222 33334555556666666666666
Q ss_pred cCCChhhhHhcCCccchhhhchhHH
Q 031336 90 DLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 90 Di~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
+.+|.|.|++.|+||+|+++|+|++
T Consensus 180 ~~~d~edd~~~G~~tlpv~~G~~~a 204 (279)
T PRK12869 180 ALKYREDYRRAGVPMLPAVVGEKTS 204 (279)
T ss_pred HHHhHHhHHHcCCeecceeecHHHH
Confidence 7789999999999999999999988
No 44
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=98.59 E-value=2.5e-07 Score=78.17 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=57.1
Q ss_pred HHHHHHHHHH-HHHhcCCCCccccccchhhhHHHHHHHhhh--hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 031336 8 LLNQILFFLC-GCAYSLPLPFLRWKSHTFMAPLCLVITMGL--TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFV 84 (161)
Q Consensus 8 ~~~~~l~l~l-g~~YS~~~PPlRlKr~p~la~l~I~~v~gl--v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~ 84 (161)
.+...++.++ +++||. .+||.+++ +..+....|. +..|+.. .... ++.+.+.+.....++...
T Consensus 108 ~~l~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~~a------~~g~--~~~~~~~l~~~~~~w~~~ 173 (280)
T TIGR01473 108 ALLGLFGIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGWAA------VTGS--ISLGAWLLFAIIFLWQPP 173 (280)
T ss_pred HHHHHHHHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHHHH------hcCC--CCHHHHHHHHHHHHHHHH
Confidence 3333455544 889994 68998866 5555555543 4555432 1222 233334444444444444
Q ss_pred HHHHhcCCChhhhHhcCCccchhhhchhHH
Q 031336 85 NGLLKDLPDVEGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 85 i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~ 114 (161)
-...-..+|.|.||+.|+||+|+++|+|++
T Consensus 174 ~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a 203 (280)
T TIGR01473 174 HFWALALKYKDDYRAAGIPMLPVVKGERIT 203 (280)
T ss_pred HHHHHHHHhhhhHHHCCCccCCcccCHHHH
Confidence 333445678999999999999999999988
No 45
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=98.43 E-value=9.4e-07 Score=75.61 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=58.4
Q ss_pred HHHHhcCCCCccccccchhhhHHHHHHHhh-h-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 031336 17 CGCAYSLPLPFLRWKSHTFMAPLCLVITMG-L-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDV 94 (161)
Q Consensus 17 lg~~YS~~~PPlRlKr~p~la~l~I~~v~g-l-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~Di 94 (161)
...+||. ++||.+ +++..+..+.+ + +..|++. ... .++.+.+++.+...++.........++|.
T Consensus 127 ~~~~Ys~-----~lKr~~-~~~~~v~~~~g~~~~l~g~~a------~~g--~~~~~~~~l~~~~~lw~~~~~~~~~~~d~ 192 (296)
T PRK04375 127 YVVVYTL-----WLKRRT-PQNIVIGGAAGAMPPLIGWAA------VTG--SLSWEALILFLIIFLWTPPHFWALAIFRK 192 (296)
T ss_pred HHHHhcc-----chhcCC-ccchHHHHHHHHhHHHHHHHH------hCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668883 899999 56777776654 4 5666542 222 23343455666666676666655556777
Q ss_pred hhhHhcCCccchhhhchhHH
Q 031336 95 EGDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 95 eGDr~~Gi~Tl~v~lG~~~~ 114 (161)
|.||+.|+||+|+++|+|++
T Consensus 193 ~D~~~~G~~tlpv~~G~~~~ 212 (296)
T PRK04375 193 DDYAAAGIPMLPVVKGIRVT 212 (296)
T ss_pred hhHHHcCCCccceeeCHHHH
Confidence 77899999999999999987
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=98.30 E-value=5.2e-06 Score=71.96 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=64.6
Q ss_pred HHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 031336 17 CGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVE 95 (161)
Q Consensus 17 lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~Die 95 (161)
...+|+. ++||++++++.......++ ...|+.. .++. ++...+.+...+.++...-...++++|.|
T Consensus 130 ~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~a------~~g~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~ 196 (306)
T PRK13362 130 YVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYCA------VTGQ--FDAGALILLLMFSLWQMPHSYAIAIFRFN 196 (306)
T ss_pred HHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHHH------HcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 4678984 8999999887766666666 6777643 2222 23444666777777777777888888899
Q ss_pred hhHhcCCccchhhhchhHH
Q 031336 96 GDKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 96 GDr~~Gi~Tl~v~lG~~~~ 114 (161)
+|++.|++|+|++.|+|++
T Consensus 197 Dy~~aG~~~lpv~~G~~~t 215 (306)
T PRK13362 197 DYAAAGIPVLPVARGIAKT 215 (306)
T ss_pred hHHHCCCeeeceecChHHH
Confidence 9999999999999999988
No 47
>PRK08238 hypothetical protein; Validated
Probab=95.81 E-value=0.023 Score=52.33 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 031336 4 SPPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFA 82 (161)
Q Consensus 4 s~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa 82 (161)
|+..+..++..+++..+||. ++||.++++..++....++ +..|... .+ .+.+-+++ .+..++.
T Consensus 294 ~~~~~~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~----~~~s~wll-~~~~~~~ 357 (479)
T PRK08238 294 GPAFLLVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IG----VALSFWLL-AFSMFFF 357 (479)
T ss_pred hHHHHHHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hc----cCHHHHHH-HHHHHHH
Confidence 34445566677788889994 9999999999988887777 7777532 22 22332333 2444567
Q ss_pred HHHHHHhcCCChhhhHhcCC
Q 031336 83 FVNGLLKDLPDVEGDKKFGM 102 (161)
Q Consensus 83 ~~i~i~KDi~DieGDr~~Gi 102 (161)
..+++.|...|++++++.|-
T Consensus 358 l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 358 LSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHHHhHHHHHHHHhcCC
Confidence 78899999999999999885
No 48
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=94.38 E-value=0.13 Score=44.66 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh-hhhHH
Q 031336 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL-TGLPF 52 (161)
Q Consensus 5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl-v~~G~ 52 (161)
+..++.....+++.++||. ++||.|+++.++++...++ +..|.
T Consensus 115 ~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G~ 158 (295)
T PRK12324 115 PKLALVLLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAGG 158 (295)
T ss_pred HHHHHHHHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHHH
Confidence 3334445677888899994 9999999999998777776 55554
No 49
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=91.53 E-value=0.16 Score=44.32 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH--HHHHH-HH-H-HHHHHHhhhchhhhhhh
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV--GVSTL-RQ-Y-DVSGLRMCSYSWGFLVF 139 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~--~~~ll-~~-y-~~ai~~~~~~~~~~~~~ 139 (161)
+=+|.-.|.-.|.|.||+.||-|+++.+|+... ...++ .+ | .+.|++.-.+.|-.++.
T Consensus 242 teailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~~lpl 304 (359)
T KOG4581|consen 242 TEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISFALPL 304 (359)
T ss_pred hHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334445688999999999999999999999988 44444 44 6 66676666666555443
No 50
>PLN02776 prenyltransferase
Probab=83.38 E-value=25 Score=31.47 Aligned_cols=79 Identities=9% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHhcCCCCccccccchhhhHHHHHHHhh-h-hhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHH--HHH-HHhcCC
Q 031336 18 GCAYSLPLPFLRWKSHTFMAPLCLVITMG-L-TGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAF--VNG-LLKDLP 92 (161)
Q Consensus 18 g~~YS~~~PPlRlKr~p~la~l~I~~v~g-l-v~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~--~i~-i~KDi~ 92 (161)
...|+ .+||+..+ +..+-.+.| + ...||.. .+.+..++ .+.+.+...++.. .-. ..+|
T Consensus 113 ~~vYt------~lKR~t~~-~~~lG~~~Ga~ppL~Gw~A------vtg~~~~~--~~~Lf~~~~~Wq~pHf~~la~~~-- 175 (341)
T PLN02776 113 AFVYT------PLKQIHPA-NTWVGAVVGAIPPLMGWAA------ASGQLDAG--AMVLAAALYFWQMPHFMALAYMC-- 175 (341)
T ss_pred HHHHH------hHccCCch-hHHHHHHHHHHHHHHHHHH------HcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHh--
Confidence 34677 49999966 455455555 5 6666632 22223332 2333333333433 222 2333
Q ss_pred ChhhhHhcCCccchhhh--chhHH
Q 031336 93 DVEGDKKFGMNTLCVLL--GKEKV 114 (161)
Q Consensus 93 DieGDr~~Gi~Tl~v~l--G~~~~ 114 (161)
-|-|++.|++.+|+.- |++.+
T Consensus 176 -~dDy~~ag~pmlpv~~~~g~~ta 198 (341)
T PLN02776 176 -RDDYAAGGYRMLSLADATGRRTA 198 (341)
T ss_pred -HHHHHhCCCcccCccccchHHHH
Confidence 3367899999999976 34444
No 51
>PRK13592 ubiA prenyltransferase; Provisional
Probab=78.56 E-value=4.2 Score=35.95 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCChhhhHhcC
Q 031336 79 SIFAFVNGLLKDLPDVEGDKKFG 101 (161)
Q Consensus 79 ~~fa~~i~i~KDi~DieGDr~~G 101 (161)
.+++.+-.++||..|.|=||.+-
T Consensus 56 f~~~~~gniiNDy~D~EIDrIN~ 78 (299)
T PRK13592 56 FGFWMILRIADDFKDYETDRRLF 78 (299)
T ss_pred HHHHHHhHHHHHHhhHHHhhhcC
Confidence 34556678999999999998864
No 52
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=56.61 E-value=31 Score=28.86 Aligned_cols=33 Identities=18% Similarity=0.012 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcCCccchhhhch
Q 031336 78 MSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 78 ~~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~ 111 (161)
..+...+-.++||.-|.|-|+++ -+.=|..-|+
T Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 33445555799999999999988 3556666664
No 53
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=54.99 E-value=45 Score=26.57 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCChhhhHhc
Q 031336 80 IFAFVNGLLKDLPDVEGDKKF 100 (161)
Q Consensus 80 ~fa~~i~i~KDi~DieGDr~~ 100 (161)
+.......+||..|.|=||..
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~ 54 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIH 54 (257)
T ss_pred HHHHHHHHhhChhhhhcCccc
Confidence 566677899999999999995
No 54
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=54.31 E-value=31 Score=30.09 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhc
Q 031336 77 IMSIFAFVNGLLKDLPDVEGDKKF 100 (161)
Q Consensus 77 ~~~~fa~~i~i~KDi~DieGDr~~ 100 (161)
.+++.+.+..++||+-|.|=||++
T Consensus 54 ~~~l~~sa~y~iND~~D~e~Dr~~ 77 (295)
T PRK12324 54 LFCLASSAVYLVNDIRDVEADRLH 77 (295)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccC
Confidence 344556677899999999999996
No 55
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=53.10 E-value=44 Score=28.15 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcCCccchhhhch
Q 031336 78 MSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 78 ~~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~ 111 (161)
..+...+-.++||.-|.|-||+.. +.=|..=|+
T Consensus 46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~ 78 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHhhcccccccccC-CCCCcCCCc
Confidence 334455557999999999999765 455554443
No 56
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=52.38 E-value=1.1e+02 Score=26.67 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCChhhhHhcCC-ccchhhhch
Q 031336 78 MSIFAFVNGLLKDLPDVEGDKKFGM-NTLCVLLGK 111 (161)
Q Consensus 78 ~~~fa~~i~i~KDi~DieGDr~~Gi-~Tl~v~lG~ 111 (161)
..+.+.+-..+||.-|.|=||++.- +.=|+.=|+
T Consensus 56 ~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~ 90 (306)
T PRK13362 56 LSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGE 90 (306)
T ss_pred HHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCC
Confidence 3344556679999999999987643 233444454
No 57
>PRK13591 ubiA prenyltransferase; Provisional
Probab=49.35 E-value=98 Score=27.45 Aligned_cols=37 Identities=19% Similarity=0.077 Sum_probs=25.8
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhc
Q 031336 59 YVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKF 100 (161)
Q Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~DieGDr~~ 100 (161)
.+.+.+..+|- ....++......++||.-|.|-|+..
T Consensus 53 lL~g~~~~~~~-----~~~~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 53 LLLGLQSSILT-----CIAGGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHhCCCcchHH-----HHHHHHHHHHHHHHhhhccchhhhcc
Confidence 34565555442 23344567788999999999999885
No 58
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=48.62 E-value=58 Score=28.33 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=17.5
Q ss_pred HhcCCChhhhHhcCCccchhhhch
Q 031336 88 LKDLPDVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 88 ~KDi~DieGDr~~Gi~Tl~v~lG~ 111 (161)
+||..|.|=||... ++.|+.=|+
T Consensus 72 iNd~~D~~iD~ink-p~rPiasG~ 94 (308)
T PRK12887 72 LNQLTDIEIDRINK-PHLPLAAGE 94 (308)
T ss_pred HhhhhhHHHHhcCC-CCCCcCCcc
Confidence 99999999999654 666654444
No 59
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=45.23 E-value=45 Score=28.23 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC-ccchhhhch
Q 031336 71 LILMGAIMSIFAFVNGLLKDLPDVEGDKKFGM-NTLCVLLGK 111 (161)
Q Consensus 71 l~~~~~~~~~fa~~i~i~KDi~DieGDr~~Gi-~Tl~v~lG~ 111 (161)
+....+.......+..++||+.|.|=||++-- |.=|..-|+
T Consensus 49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 34444444556666789999999999998865 234444444
No 60
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=44.76 E-value=40 Score=30.32 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhchhHH----HHHHHHH-HHHHHHHhhhchhhhhhhhcccccccccccccccc
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKV----GVSTLRQ-YDVSGLRMCSYSWGFLVFHDKQACHHNWPQHTCFD 156 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~~~~----~~~ll~~-y~~ai~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (161)
+..-.++-.-+|-+-|-+-|+++.+.++|++.= +.+...+ ...+...++-..|..-+. +|-.+-+|-.|-..||
T Consensus 237 tl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~La~aG~~s~q~~pyy~~-lg~~~~~L~~~i~~vd 315 (353)
T KOG1381|consen 237 TLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASDQTWPYYAA-LGAVAARLGSQIYKVD 315 (353)
T ss_pred hhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHHHHhhhccCCCchHHHH-HHHHHHHHHhheeeee
Confidence 333356677799999999999999999999754 3333333 344444777777876666 4444445555666666
Q ss_pred cc
Q 031336 157 FV 158 (161)
Q Consensus 157 ~~ 158 (161)
+-
T Consensus 316 iD 317 (353)
T KOG1381|consen 316 ID 317 (353)
T ss_pred cC
Confidence 63
No 61
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=43.87 E-value=50 Score=28.48 Aligned_cols=31 Identities=13% Similarity=-0.025 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCChhhhHhcCCccchhhhc
Q 031336 79 SIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLG 110 (161)
Q Consensus 79 ~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG 110 (161)
.+...+..++||.-|.|-|++.+ ++=|+.-|
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G 94 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSG 94 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCC
Confidence 45555668999999999998776 34444444
No 62
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=43.10 E-value=48 Score=27.82 Aligned_cols=30 Identities=17% Similarity=-0.009 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhch
Q 031336 81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 81 fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~ 111 (161)
...+-.++||.-|.|-||++. +.=|..-|+
T Consensus 50 ~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~ 79 (276)
T PRK12882 50 ATGAGNAINDYFDREIDRINR-PDRPIPSGA 79 (276)
T ss_pred HHHHHHHHHHHhhhccccccC-CCCCcCCCC
Confidence 444457999999999999765 555666654
No 63
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=42.26 E-value=74 Score=26.69 Aligned_cols=29 Identities=21% Similarity=0.009 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhch
Q 031336 82 AFVNGLLKDLPDVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~ 111 (161)
..+-.++||.-|.|=|+.+. ++=|+.-|+
T Consensus 50 ~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (277)
T PRK12883 50 CSGGNTINDYFDYEIDKINR-PNRPLPRGA 78 (277)
T ss_pred HHHHhHHHhhhhHhccccCC-CCCCCCCCc
Confidence 34568999999999999765 555555443
No 64
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=40.74 E-value=48 Score=27.90 Aligned_cols=30 Identities=13% Similarity=-0.054 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhhc
Q 031336 80 IFAFVNGLLKDLPDVEGDKKFGMNTLCVLLG 110 (161)
Q Consensus 80 ~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG 110 (161)
+...+-..+||.-|.|-|++.+ +.=|+.=|
T Consensus 49 l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G 78 (283)
T TIGR01476 49 LGTGFSQSINDYFDRDVDAINE-PQRPIPSG 78 (283)
T ss_pred HHHHHHHHHHhHhhhCcccCCC-CCCCCCCC
Confidence 3445557999999999999765 34444333
No 65
>PRK10034 fructuronate transporter; Provisional
Probab=38.73 E-value=92 Score=28.89 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=37.7
Q ss_pred ccccchhhhHHHHHHHhhh-hhhHHHH---hHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCcc
Q 031336 29 RWKSHTFMAPLCLVITMGL-TGLPFYM---HTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNT 104 (161)
Q Consensus 29 RlKr~p~la~l~I~~v~gl-v~~G~f~---~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~DieGDr~~Gi~T 104 (161)
|+|.||+++-++.+.+-++ -..+... .+... +++ +-.++..+..+-+++.-.+|.....+.+. ++
T Consensus 22 k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G-~g~---~~~si~lii~lGailG~lLe~SGaa~~Ia-------~~ 90 (447)
T PRK10034 22 KFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAG-FGN---TLGELAIIVVFGAVIGKLMVDSGAAHQIA-------HT 90 (447)
T ss_pred HhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHcCHHHHHH-------HH
Confidence 9999999987765555554 2222222 11111 221 11233333333333444444433333333 57
Q ss_pred chhhhchhHH
Q 031336 105 LCVLLGKEKV 114 (161)
Q Consensus 105 l~v~lG~~~~ 114 (161)
+--++|+||+
T Consensus 91 i~~~~G~kr~ 100 (447)
T PRK10034 91 LLARLGLRYV 100 (447)
T ss_pred HHHHhCccch
Confidence 7778899998
No 66
>PRK10472 low affinity gluconate transporter; Provisional
Probab=37.36 E-value=1e+02 Score=28.52 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh
Q 031336 5 PPLLLNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL 47 (161)
Q Consensus 5 ~~l~~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl 47 (161)
..+++..++++++-..-.. |+|.||+++.+..+.+-++
T Consensus 4 ~~ll~~~~~ai~~li~li~-----k~kl~~fialli~Alivgl 41 (445)
T PRK10472 4 LTLVLTAVGSVLLLLFLVM-----KARMHAFVALMVVSMGAGL 41 (445)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HhCccHHHHHHHHHHHHHH
Confidence 3455555566665555553 9999999987665555554
No 67
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=37.18 E-value=20 Score=28.67 Aligned_cols=30 Identities=43% Similarity=0.497 Sum_probs=25.6
Q ss_pred HHHHhcCCChhhhH----------hcCCccchhhhchhHH
Q 031336 85 NGLLKDLPDVEGDK----------KFGMNTLCVLLGKEKV 114 (161)
Q Consensus 85 i~i~KDi~DieGDr----------~~Gi~Tl~v~lG~~~~ 114 (161)
.-+.+|+.|+.+|. +.|..|+|....++..
T Consensus 162 ~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~ 201 (236)
T cd00867 162 FQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERA 201 (236)
T ss_pred HHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHH
Confidence 35999999999998 8999999999885544
No 68
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=35.47 E-value=1.3e+02 Score=25.85 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=15.5
Q ss_pred HHHhcCCChhhhHhcCCcc
Q 031336 86 GLLKDLPDVEGDKKFGMNT 104 (161)
Q Consensus 86 ~i~KDi~DieGDr~~Gi~T 104 (161)
-.+||.-|.|-||+..-|.
T Consensus 62 y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 62 YGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hcchhhhhhhccccCCCcc
Confidence 4479999999999876664
No 69
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=34.18 E-value=1.1e+02 Score=25.87 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhc
Q 031336 77 IMSIFAFVNGLLKDLPDVEGDKKF 100 (161)
Q Consensus 77 ~~~~fa~~i~i~KDi~DieGDr~~ 100 (161)
-..+...+-.++||.-|.|-|++.
T Consensus 44 ~~~l~~~a~~~~Nd~~D~~~D~~~ 67 (282)
T TIGR01475 44 AAVSARTAAMAFNRIIDRAIDARN 67 (282)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCC
Confidence 333455566799999999999986
No 70
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=33.92 E-value=89 Score=26.47 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHhcC
Q 031336 76 AIMSIFAFVNGLLKDLPDVEGDKKFG 101 (161)
Q Consensus 76 ~~~~~fa~~i~i~KDi~DieGDr~~G 101 (161)
+-..+...+-.++||.-|.|-|+++.
T Consensus 43 ~~~~l~~~a~~~~Nd~~D~~iD~~~~ 68 (279)
T PRK12869 43 IGGTLASGGSAAFNHGIERDIDKVMS 68 (279)
T ss_pred HHHHHHHHHHHHHhchHhcCCCCCCC
Confidence 33344455568999999999999864
No 71
>PLN00012 chlorophyll synthetase; Provisional
Probab=33.87 E-value=99 Score=27.90 Aligned_cols=32 Identities=16% Similarity=-0.026 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCChhhhHhcCCccchhhhch
Q 031336 79 SIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 79 ~~fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~ 111 (161)
.+...+-.++||.-|.|-|++++ +.=|+.=|+
T Consensus 133 ~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~ 164 (375)
T PLN00012 133 PFLTGYTQTINDWYDREIDAINE-PYRPIPSGA 164 (375)
T ss_pred HHHHHHHHHHHCeecHhhhccCC-CCCCcCCCc
Confidence 33444557999999999999886 444554453
No 72
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=33.47 E-value=1.1e+02 Score=26.58 Aligned_cols=30 Identities=20% Similarity=-0.001 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhch
Q 031336 81 FAFVNGLLKDLPDVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 81 fa~~i~i~KDi~DieGDr~~Gi~Tl~v~lG~ 111 (161)
...+..++||.-|.|-||+.+ +.=|+.=|+
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~ 106 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINE-PYRPIPSGA 106 (314)
T ss_pred HHHHHHHHhhhhccCccccCC-CCCCCCCce
Confidence 445557999999999999765 444444343
No 73
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=33.43 E-value=1.9e+02 Score=24.07 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHhcC
Q 031336 75 GAIMSIFAFVNGLLKDLPDVEGDKKFG 101 (161)
Q Consensus 75 ~~~~~~fa~~i~i~KDi~DieGDr~~G 101 (161)
.+...+...+...+||.-|.|-|++..
T Consensus 42 ~~~~~~~~~~~~~~N~~~D~~~D~~n~ 68 (285)
T PRK12872 42 LLITFLIAAAVYIINYLTDLEEDIINK 68 (285)
T ss_pred HHHHHHHHHHHHHhhhhcCCchhhcCC
Confidence 334445666778999999999998754
No 74
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=32.24 E-value=1.6e+02 Score=26.57 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh
Q 031336 9 LNQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL 47 (161)
Q Consensus 9 ~~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl 47 (161)
..+.++..+-.+... |+|.||+++.+..+...++
T Consensus 4 ~~~~~~i~~~~~~~~-----~~k~~~~ial~~~a~~~~l 37 (440)
T TIGR00791 4 VIVALGIVLLLLLIM-----KFKLNTFVALLVVSFGVGL 37 (440)
T ss_pred HHHHHHHHHHHHHHH-----HHcccHHHHHHHHHHHHHH
Confidence 344455555555564 9999999986665555554
No 75
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=28.63 E-value=1.4e+02 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCChhhhHhcC
Q 031336 80 IFAFVNGLLKDLPDVEGDKKFG 101 (161)
Q Consensus 80 ~fa~~i~i~KDi~DieGDr~~G 101 (161)
+...+-..+||.-|.|=|+++.
T Consensus 46 l~~~a~~~~Nd~~D~~iD~~~~ 67 (280)
T TIGR01473 46 LAAASANAFNMYIDRDIDKKMK 67 (280)
T ss_pred HHHHHHHHHHhhcccCcCCCCC
Confidence 4444557999999999999743
No 76
>PRK11383 hypothetical protein; Provisional
Probab=28.60 E-value=3.1e+02 Score=22.04 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccc--cchhhh---HHHHHHHhhhhhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHH
Q 031336 7 LLLNQILFFLCGCAYSLPLPFLRWK--SHTFMA---PLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIF 81 (161)
Q Consensus 7 l~~~~~l~l~lg~~YS~~~PPlRlK--r~p~la---~l~I~~v~glv~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~f 81 (161)
-+..++++++-.+.|-. -.|.| ..|.-+ ++|=.++- +.++.+. -.+.+.+..+++.-+..+.+....
T Consensus 44 Y~~vl~lglF~avs~QK---~vRD~~egi~vt~~f~~~cw~a~l--~~i~LL~---iGLwNA~l~lsEKGfY~~af~lsL 115 (145)
T PRK11383 44 YFAVLVLGLFSAASYQK---TVRDKYEGIPTTSIYYMTCLTVFI--ISVALLM---VGLWNATLLLSEKGFYGLAFFLSL 115 (145)
T ss_pred HHHHHHHHHHHHHHHHH---HHhhcccCCChhHHHHHHHHHHHH--HHHHHHH---HHHhcCCcchhhhhHHHHHHHHHH
Confidence 34556677777777763 33777 556333 22211110 1112211 123555666666656655555444
Q ss_pred HHHHHHHhcCCChhhh
Q 031336 82 AFVNGLLKDLPDVEGD 97 (161)
Q Consensus 82 a~~i~i~KDi~DieGD 97 (161)
--++.+-|.+.|....
T Consensus 116 Fgai~vQKn~RD~~~~ 131 (145)
T PRK11383 116 FGAVAVQKNIRDAGIN 131 (145)
T ss_pred HHHHHHHhhhhhhhhc
Confidence 4567888999988543
No 77
>PRK08238 hypothetical protein; Validated
Probab=27.29 E-value=1.4e+02 Score=27.85 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhcCC-ccchhhhchh
Q 031336 77 IMSIFAFVNGLLKDLPDVEGDKKFGM-NTLCVLLGKE 112 (161)
Q Consensus 77 ~~~~fa~~i~i~KDi~DieGDr~~Gi-~Tl~v~lG~~ 112 (161)
.+++.+.+..++||+-|.|=||++-- +.=|..=|+-
T Consensus 234 ~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~i 270 (479)
T PRK08238 234 AFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGAL 270 (479)
T ss_pred HHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCC
Confidence 34456667789999999999999832 3335444443
No 78
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=26.33 E-value=2.7e+02 Score=24.11 Aligned_cols=64 Identities=25% Similarity=0.434 Sum_probs=37.6
Q ss_pred Cccccccchhhh-HHHHHHHhhhhhhHHHHhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 031336 26 PFLRWKSHTFMA-PLCLVITMGLTGLPFYMHTQQYVLGRPFVITRPLILMGAIMSIFAFVNGLLKDLPDVEGDKKFGM 102 (161)
Q Consensus 26 PPlRlKr~p~la-~l~I~~v~glv~~G~f~~~~~~~~~~~~~~~~~l~~~~~~~~~fa~~i~i~KDi~DieGDr~~Gi 102 (161)
|.+=+||..+.+ ++.-+.+.|+ .+|++. + +| +.+....+-.+.+..++.+|+...+++|..-|+
T Consensus 33 ~flvlRr~sl~gdalsHa~L~Gv-al~~ll-------~----~~-~~~~a~~~~l~~a~~i~~l~~~~~~~~D~aigi 97 (274)
T COG1108 33 TFLVLRRMSLMGDALSHAVLPGV-ALGFLL-------G----IN-PLLGAFIFGLLAALLIGYLRRRSKLKEDTAIGI 97 (274)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH-HHHHHH-------h----hh-HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 456789988887 6666666663 334332 1 11 123333344455666677777777777766555
No 79
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=24.38 E-value=2.9e+02 Score=23.21 Aligned_cols=20 Identities=20% Similarity=0.667 Sum_probs=11.9
Q ss_pred ccccccchhhh-HHHHHHHhh
Q 031336 27 FLRWKSHTFMA-PLCLVITMG 46 (161)
Q Consensus 27 PlRlKr~p~la-~l~I~~v~g 46 (161)
.+.+||..+.+ ++.-.+..|
T Consensus 25 ~vvlr~~~~~~~alsH~a~~G 45 (261)
T PRK09543 25 FVVWRRMSYFGDTLAHASLLG 45 (261)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 45677777776 444444444
No 80
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=24.32 E-value=1.9e+02 Score=24.35 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCChhhhHhcCC-ccchhhhch
Q 031336 81 FAFVNGLLKDLPDVEGDKKFGM-NTLCVLLGK 111 (161)
Q Consensus 81 fa~~i~i~KDi~DieGDr~~Gi-~Tl~v~lG~ 111 (161)
...+-.++||.-|.|=|++..- +.=|+.-|+
T Consensus 57 ~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 88 (285)
T PRK12847 57 MRSAGCIINDIFDRKIDKHVARTKNRPLASGA 88 (285)
T ss_pred HHHHHHHHHhHHHhhhccCCCcccCCCCCCCC
Confidence 4444569999999999986432 234444443
No 81
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=24.08 E-value=1.9e+02 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCChhhhHhcCC-ccchhhhch
Q 031336 82 AFVNGLLKDLPDVEGDKKFGM-NTLCVLLGK 111 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi-~Tl~v~lG~ 111 (161)
..+-..+||.-|.|=|++..- +.=|+.=|+
T Consensus 53 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 83 (281)
T TIGR01474 53 RGAGCVINDIWDRDFDPQVERTKSRPLASGA 83 (281)
T ss_pred HHHHHHHHhHhhhcccccCCcccCCCCCCCC
Confidence 344469999999999986542 223444454
No 82
>COG2119 Predicted membrane protein [Function unknown]
Probab=23.65 E-value=3.1e+02 Score=22.94 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCCccccccchhhhHHHHHHH--hhh-hhhHH
Q 031336 15 FLCGCAYSLPLPFLRWKSHTFMAPLCLVIT--MGL-TGLPF 52 (161)
Q Consensus 15 l~lg~~YS~~~PPlRlKr~p~la~l~I~~v--~gl-v~~G~ 52 (161)
.++.-+|.. |.||.|+..+..++.. ..+ +..|.
T Consensus 21 ~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~ 56 (190)
T COG2119 21 QLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGH 56 (190)
T ss_pred HHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 345566664 8889998887765543 344 55554
No 83
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=23.01 E-value=52 Score=24.81 Aligned_cols=32 Identities=41% Similarity=0.446 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCChhhhHhc--CCccchhhhchh
Q 031336 81 FAFVNGLLKDLPDVEGDKKF--GMNTLCVLLGKE 112 (161)
Q Consensus 81 fa~~i~i~KDi~DieGDr~~--Gi~Tl~v~lG~~ 112 (161)
......+.||+.|+++|.+. |..++|..+-.+
T Consensus 152 ~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~ 185 (243)
T cd00385 152 LGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALE 185 (243)
T ss_pred HHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHH
Confidence 45555799999999999998 788898876544
No 84
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=22.68 E-value=1.8e+02 Score=25.06 Aligned_cols=32 Identities=22% Similarity=0.091 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCChhhhHhcCC-ccchhhhchhH
Q 031336 82 AFVNGLLKDLPDVEGDKKFGM-NTLCVLLGKEK 113 (161)
Q Consensus 82 a~~i~i~KDi~DieGDr~~Gi-~Tl~v~lG~~~ 113 (161)
..+-..+||+-|.|=|++..- +.=|..=|+-.
T Consensus 58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is 90 (289)
T PLN02809 58 RGAGCTINDLLDRDIDKKVERTKLRPIASGALT 90 (289)
T ss_pred HHHHHHHHhhHHhccccCCCCCCCCCCCCCCCC
Confidence 333469999999999987542 45666667543
No 85
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=21.83 E-value=2.4e+02 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHhhh
Q 031336 10 NQILFFLCGCAYSLPLPFLRWKSHTFMAPLCLVITMGL 47 (161)
Q Consensus 10 ~~~l~l~lg~~YS~~~PPlRlKr~p~la~l~I~~v~gl 47 (161)
.++++.++-.+-.. |+|-||+++.+..+..-|+
T Consensus 5 ~~~~~I~~ll~li~-----k~Kl~pf~alli~a~~~gl 37 (438)
T PRK14984 5 IVAIGVALLLLLMI-----RFKMNGFIALVLVALAVGL 37 (438)
T ss_pred HHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHH
Confidence 33444444444443 9999999987665555554
No 86
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=20.57 E-value=3.6e+02 Score=22.78 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=12.5
Q ss_pred Cccccccchhhh-HHHHHHHhh
Q 031336 26 PFLRWKSHTFMA-PLCLVITMG 46 (161)
Q Consensus 26 PPlRlKr~p~la-~l~I~~v~g 46 (161)
+-+-+||..+.+ ++.-.+..|
T Consensus 24 ~~vv~Rr~~f~~~alsH~al~G 45 (257)
T PF00950_consen 24 VFVVLRRMSFLGDALSHAALAG 45 (257)
T ss_pred HHHHHhhHHHhhhhHHHHHHHH
Confidence 345677777776 555554444
Done!