Query 031336
Match_columns 161
No_of_seqs 131 out of 369
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 20:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 31.9 36 0.0012 28.3 3.5 29 86-114 213-252 (297)
2 2hdi_B Colicin-IA; outer membr 29.1 17 0.00059 26.2 0.9 16 84-99 72-92 (113)
3 3llw_A Geranyltranstransferase 26.2 26 0.0009 29.3 1.7 29 86-114 227-264 (311)
4 3lsn_A Geranyltranstransferase 23.3 32 0.0011 28.7 1.7 29 86-114 220-259 (304)
5 3ts7_A Geranyltranstransferase 21.7 44 0.0015 28.2 2.2 29 86-114 226-265 (324)
6 2h8o_A Geranyltranstransferase 21.5 45 0.0015 28.2 2.2 29 86-114 259-298 (335)
7 3lom_A Geranyltranstransferase 20.9 48 0.0017 27.7 2.3 29 86-114 227-266 (313)
8 1rqj_A Geranyltranstransferase 20.2 55 0.0019 26.9 2.5 29 86-114 220-259 (299)
9 4f62_A Geranyltranstransferase 17.8 57 0.002 27.4 2.1 29 86-114 219-258 (317)
10 3p8r_A Geranyltranstransferase 17.5 35 0.0012 28.3 0.7 29 86-114 226-265 (302)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=31.93 E-value=36 Score=28.27 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=17.6
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGD-----------r~~Gi~Tl~v~lG~~~~ 114 (161)
-+..|+-|+.|| -+.|..|+|+.+|.+++
T Consensus 213 QI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 252 (297)
T 3m0g_A 213 QIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGA 252 (297)
T ss_dssp HHHTTCC---------------------CCHHHHHCSSHH
T ss_pred HHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHH
Confidence 489999999885 46789999999999988
No 2
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=29.13 E-value=17 Score=26.23 Aligned_cols=16 Identities=56% Similarity=0.792 Sum_probs=12.6
Q ss_pred HHHHHhcC-----CChhhhHh
Q 031336 84 VNGLLKDL-----PDVEGDKK 99 (161)
Q Consensus 84 ~i~i~KDi-----~DieGDr~ 99 (161)
-..|++|- ||+|||++
T Consensus 72 ~~nil~drnpvvtedvegdkk 92 (113)
T 2hdi_B 72 KRNILNDRNPVVTEDVEGDKK 92 (113)
T ss_dssp HHHTSCCCCSCCSSCHHHHHH
T ss_pred hhhhhcCCCCeeecccccchh
Confidence 44678884 89999987
No 3
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=26.21 E-value=26 Score=29.34 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=23.0
Q ss_pred HHHhcCCChhhhH---------hcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGDK---------KFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGDr---------~~Gi~Tl~v~lG~~~~ 114 (161)
-|..|+-|+.||. +.|..|+|+.+|.+++
T Consensus 227 QI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a 264 (311)
T 3llw_A 227 QVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERA 264 (311)
T ss_dssp HHHHHHHHHHC-------------CCSCHHHHHCHHHH
T ss_pred HHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHH
Confidence 4899999998876 6799999999999988
No 4
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=23.30 E-value=32 Score=28.68 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=21.6
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGD-----------r~~Gi~Tl~v~lG~~~~ 114 (161)
-|..|+-|+.|| -+.|..|+|+.+|.+++
T Consensus 220 QI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a 259 (304)
T 3lsn_A 220 QVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAA 259 (304)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHCHHHH
T ss_pred HHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHH
Confidence 489999999885 46789999999999988
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=21.73 E-value=44 Score=28.18 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=21.4
Q ss_pred HHHhcCCChhh-----------hHhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEG-----------DKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieG-----------Dr~~Gi~Tl~v~lG~~~~ 114 (161)
-|..|+-|+.| |-+.|..|+|+.+|.+++
T Consensus 226 QI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a 265 (324)
T 3ts7_A 226 QIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGA 265 (324)
T ss_dssp HHHHHHHHHTCC---------------CCCHHHHHCHHHH
T ss_pred HHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHH
Confidence 48889888877 456899999999999988
No 6
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=21.48 E-value=45 Score=28.20 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGD-----------r~~Gi~Tl~v~lG~~~~ 114 (161)
-+..|+-|+.|| -++|..|+|+.+|.+++
T Consensus 259 QI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a 298 (335)
T 2h8o_A 259 QLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWA 298 (335)
T ss_dssp HHHHHHHHHC-----------------CCCHHHHHCHHHH
T ss_pred HHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHH
Confidence 488888888775 45789999999998776
No 7
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=20.93 E-value=48 Score=27.72 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=22.0
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGD-----------r~~Gi~Tl~v~lG~~~~ 114 (161)
-|..|+-|+.|| -+.|..|+|+.+|.+++
T Consensus 227 QI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 266 (313)
T 3lom_A 227 QMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQL 266 (313)
T ss_dssp HHHHHHHHHHCC---------------CCCHHHHSCHHHH
T ss_pred HHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHH
Confidence 488899888775 46899999999999988
No 8
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=20.21 E-value=55 Score=26.91 Aligned_cols=29 Identities=38% Similarity=0.567 Sum_probs=24.0
Q ss_pred HHHhcCCChhhhH-----------hcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGDr-----------~~Gi~Tl~v~lG~~~~ 114 (161)
-+..|+-|+.||. ++|..|+|+.+|.+++
T Consensus 220 Qi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 259 (299)
T 1rqj_A 220 QVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQA 259 (299)
T ss_dssp HHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHH
T ss_pred HHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHH
Confidence 4888888887764 5789999999999877
No 9
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=17.79 E-value=57 Score=27.40 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGD-----------r~~Gi~Tl~v~lG~~~~ 114 (161)
-|..|+-|+.|| -+.|..|+|+.+|.+++
T Consensus 219 QI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a 258 (317)
T 4f62_A 219 QVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGA 258 (317)
T ss_dssp HHHHHHHHTC----------------CCCCHHHHHHHHHH
T ss_pred HHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHH
Confidence 488999888765 46799999999999988
No 10
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=17.51 E-value=35 Score=28.34 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=21.4
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGD-----------r~~Gi~Tl~v~lG~~~~ 114 (161)
-+..|+-|+.|| -+.|..|+|+.+|.+++
T Consensus 226 QI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a 265 (302)
T 3p8r_A 226 QVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGA 265 (302)
T ss_dssp HHHHHHHHHTTC---------------CCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHH
Confidence 488888888765 46899999999999887
Done!