Query 031336
Match_columns 161
No_of_seqs 131 out of 369
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 20:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 21.8 12 0.00089 28.5 0.8 29 86-114 214-253 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 20.6 13 0.00096 28.4 0.8 29 86-114 220-259 (299)
3 d1wvia_ c.108.1.14 (A:) Putati 15.7 20 0.0014 25.7 0.7 25 87-111 202-228 (253)
4 d1rqja_ a.128.1.1 (A:) Farnesy 15.6 1.3E+02 0.0095 22.3 5.7 38 81-118 76-115 (299)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 9.3 1E+02 0.0076 16.9 2.3 17 6-22 16-32 (37)
6 d2c4na1 c.108.1.14 (A:1-250) N 9.0 39 0.0028 23.9 0.4 25 87-111 198-224 (250)
7 d2r85a1 c.30.1.8 (A:1-99) 5-fo 6.7 86 0.0063 20.8 1.3 21 94-114 17-38 (99)
8 d1b24a2 d.95.2.1 (A:100-179) D 6.1 27 0.0019 22.5 -1.6 15 86-100 9-23 (80)
9 d1fpsa_ a.128.1.1 (A:) Farnesy 6.1 46 0.0034 25.6 -0.5 28 86-113 235-272 (348)
10 d2erla_ a.10.1.1 (A:) ER-1 {Eu 5.7 58 0.0042 18.0 -0.0 10 18-28 30-39 (40)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.85 E-value=12 Score=28.48 Aligned_cols=29 Identities=34% Similarity=0.424 Sum_probs=20.3
Q ss_pred HHHhcCCChhhh-----------HhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieGD-----------r~~Gi~Tl~v~lG~~~~ 114 (161)
-+..|+.|+.|| -++|..|+|+.+|.+++
T Consensus 214 Qi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a 253 (290)
T d1rtra_ 214 QIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGA 253 (290)
T ss_dssp HHHHHHHHHHHHHCC-------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHH
Confidence 488898888764 46789999999998876
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=20.59 E-value=13 Score=28.41 Aligned_cols=29 Identities=38% Similarity=0.583 Sum_probs=23.7
Q ss_pred HHHhcCCChhh-----------hHhcCCccchhhhchhHH
Q 031336 86 GLLKDLPDVEG-----------DKKFGMNTLCVLLGKEKV 114 (161)
Q Consensus 86 ~i~KDi~DieG-----------Dr~~Gi~Tl~v~lG~~~~ 114 (161)
-+..|+.|+.| |-+.|..|+|+.+|.+++
T Consensus 220 Qi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a 259 (299)
T d1rqja_ 220 QVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQA 259 (299)
T ss_dssp HHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHH
T ss_pred HHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHH
Confidence 37788888765 666789999999999887
No 3
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=15.67 E-value=20 Score=25.68 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.7
Q ss_pred HHhc-CC-ChhhhHhcCCccchhhhch
Q 031336 87 LLKD-LP-DVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 87 i~KD-i~-DieGDr~~Gi~Tl~v~lG~ 111 (161)
.+-| .+ |++|-++.|++|+-|.-|.
T Consensus 202 mIGDs~~~DI~gA~~aG~~si~V~~G~ 228 (253)
T d1wvia_ 202 MVGDNYLTDITAGIKNDIATLLVTTGF 228 (253)
T ss_dssp EEESCTTTTHHHHHHTTCEEEEESSSS
T ss_pred EEcCChHHHHHHHHHCCCCEEEECCCC
Confidence 4445 67 9999999999999988774
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=15.64 E-value=1.3e+02 Score=22.31 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCChhh-hHhcCCccchhhhchhHH-HHHH
Q 031336 81 FAFVNGLLKDLPDVEG-DKKFGMNTLCVLLGKEKV-GVST 118 (161)
Q Consensus 81 fa~~i~i~KDi~DieG-Dr~~Gi~Tl~v~lG~~~~-~~~l 118 (161)
+=.+..+-.|++|... |.+.|..|.-.++|...+ ..+-
T Consensus 76 lH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd 115 (299)
T d1rqja_ 76 IHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGD 115 (299)
T ss_dssp HHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcc
Confidence 3333447789999887 479999999999999988 4443
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.26 E-value=1e+02 Score=16.90 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 031336 6 PLLLNQILFFLCGCAYS 22 (161)
Q Consensus 6 ~l~~~~~l~l~lg~~YS 22 (161)
.|.|.+++.++++.++|
T Consensus 16 sLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 16 SLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46677888888887777
No 6
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Probab=9.04 E-value=39 Score=23.94 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.6
Q ss_pred HHhc-CC-ChhhhHhcCCccchhhhch
Q 031336 87 LLKD-LP-DVEGDKKFGMNTLCVLLGK 111 (161)
Q Consensus 87 i~KD-i~-DieGDr~~Gi~Tl~v~lG~ 111 (161)
.+=| ++ |++|=++.|++|+-|.-|.
T Consensus 198 ~IGD~~~~DI~~a~~aG~~tilV~~G~ 224 (250)
T d2c4na1 198 IVGDNLRTDILAGFQAGLETILVLSGV 224 (250)
T ss_dssp EEESCTTTHHHHHHHTTCEEEEESSSS
T ss_pred EecCChHHHHHHHHHCCCCEEEECCCC
Confidence 4556 46 8999999999999988775
No 7
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=6.67 E-value=86 Score=20.81 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=15.7
Q ss_pred hhhhHhcCCccchh-hhchhHH
Q 031336 94 VEGDKKFGMNTLCV-LLGKEKV 114 (161)
Q Consensus 94 ieGDr~~Gi~Tl~v-~lG~~~~ 114 (161)
..|-|++|-+|+++ +=|+++.
T Consensus 17 ~~GAK~EGF~Tv~vc~~~r~~~ 38 (99)
T d2r85a1 17 LKGAKDEGFETIAFGSSKVKPL 38 (99)
T ss_dssp HHHHHHTTCCEEEESCGGGHHH
T ss_pred hccHHHcCCcEEEEEcCCCCcc
Confidence 36999999999998 4444443
No 8
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=6.13 E-value=27 Score=22.48 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=10.6
Q ss_pred HHHhcCCChhhhHhc
Q 031336 86 GLLKDLPDVEGDKKF 100 (161)
Q Consensus 86 ~i~KDi~DieGDr~~ 100 (161)
+.++...|-|||+.-
T Consensus 9 AFI~GLYdAEGDKtg 23 (80)
T d1b24a2 9 AFIKGLYVAEGDKTL 23 (80)
T ss_dssp HHHHHHHHHHSCTTC
T ss_pred HHHHhhhhccccchh
Confidence 456666788999753
No 9
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.07 E-value=46 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=22.1
Q ss_pred HHHhcCCChhh----------hHhcCCccchhhhchhH
Q 031336 86 GLLKDLPDVEG----------DKKFGMNTLCVLLGKEK 113 (161)
Q Consensus 86 ~i~KDi~DieG----------Dr~~Gi~Tl~v~lG~~~ 113 (161)
-|..|+-|+.| |-+.|..|+|+.+..++
T Consensus 235 QI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 235 QIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred HHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
Confidence 48889888876 55668999999987654
No 10
>d2erla_ a.10.1.1 (A:) ER-1 {Euplotes raikovi [TaxId: 5938]}
Probab=5.72 E-value=58 Score=18.04 Aligned_cols=10 Identities=30% Similarity=0.152 Sum_probs=6.8
Q ss_pred HHHhcCCCCcc
Q 031336 18 GCAYSLPLPFL 28 (161)
Q Consensus 18 g~~YS~~~PPl 28 (161)
-|+||. -||.
T Consensus 30 myiysn-cppy 39 (40)
T d2erla_ 30 MYIYSN-CPPY 39 (40)
T ss_dssp HHHHHH-STTT
T ss_pred EEeecC-CCCC
Confidence 478984 7773
Done!