BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031338
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
           Parabacteroides Distasonis Atcc 8503 At 2.23 A
           Resolution
 pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
           Parabacteroides Distasonis Atcc 8503 At 2.23 A
           Resolution
 pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
           Parabacteroides Distasonis Atcc 8503 At 2.23 A
           Resolution
 pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
           Parabacteroides Distasonis Atcc 8503 At 2.23 A
           Resolution
 pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
           Parabacteroides Distasonis Atcc 8503 At 2.23 A
           Resolution
 pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
           Parabacteroides Distasonis Atcc 8503 At 2.23 A
           Resolution
          Length = 383

 Score = 30.4 bits (67), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 112 IAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAF 157
           + A   V LT Y    +Y++    FPL + +N++ G +Y L +D F
Sbjct: 189 LKASDYVSLTSYTHHPFYTQ----FPLEIQDNWRHGXSYNLPLDEF 230


>pdb|2FU2|A Chain A, Crystal Structure Of Protein Spy2152 From Streptococcus
           Pyogenes
          Length = 102

 Score = 25.8 bits (55), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 107 GVNDVIAAVLCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
           G + ++A  +  L+ +Y+    +  PK  F L+ L   K     G  I A  L S
Sbjct: 41  GXSSLLATKIDSLINQYILTHQFDAPKSIFDLSRLVKTKASHYKGTAISAIXLGS 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.144    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,830,079
Number of Sequences: 62578
Number of extensions: 126408
Number of successful extensions: 287
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 2
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)