BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031338
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72983|YC20L_SYNY3 Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll1509 PE=3 SV=1
Length = 109
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 59 RLVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCV 118
RL IV + + +FR+P RR +S L GF+V ++ + G DV+ A +
Sbjct: 5 RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64
Query: 119 LLTEYVTRFYYSRPKVTFPL--ALLNNFKMGFTYGLFIDAFKLAS 161
L E V R++Y R L +LN FKMG +Y LF++AFKL S
Sbjct: 65 LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109
>sp|Q1XDS2|YCF20_PORYE Uncharacterized protein ycf20 OS=Porphyra yezoensis GN=ycf20 PE=3
SV=1
Length = 108
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 66 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVT 125
L+ L+ + S S G ISLL GF+++ +S G G +IAA L V TE +
Sbjct: 13 LIKNLNNKLYYSLSELTT-GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 71
Query: 126 RFYYSRPK-VTFPLALLNNFKMGFTYGLFIDAFKLAS 161
+ YS K + + L NNFK+G TYGLF+DAFKL S
Sbjct: 72 KIVYSSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108
>sp|P51214|YCF20_PORPU Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3
SV=1
Length = 108
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 71 SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYS 130
SR Y+ A G ISLL GF+++ +S G G +IAA L V E V++ YS
Sbjct: 19 SRLYYSLNELTA--GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYS 76
Query: 131 -RPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 161
+ K + LLNN K+G TYGLF+DAFKL S
Sbjct: 77 NKKKYGVRINLLNNLKIGITYGLFVDAFKLGS 108
>sp|O80813|YC20L_ARATH Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2
Length = 197
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 89 LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRP-------KVTFPLALL 141
LL GFY A ++ G G DV+ A + V E + Y +P K+ + +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177
Query: 142 NNFKMGFTYGLFIDAFKLAS 161
N +K G GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197
>sp|Q9MUL5|YCF20_MESVI Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3
SV=1
Length = 116
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 92 GFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRP----KVTFPLALL-----N 142
GF++A ++ FG G DV+ A + V + E + YS+ K F ++ L N
Sbjct: 38 GFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLIGIN 97
Query: 143 NFKMGFTYGLFIDAFKLAS 161
K+G +GLF+DAFKL S
Sbjct: 98 YIKIGLIFGLFVDAFKLGS 116
>sp|P34813|YCF20_AGLNE Uncharacterized protein ycf20 OS=Aglaothamnion neglectum GN=ycf20
PE=3 SV=1
Length = 100
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 87 ISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRPKV--TFPLALLNNF 144
ISL G++ I G +I A+L V + E ++ YS K + +N
Sbjct: 24 ISLFLGYFFCTIICSIPKETGDWGLITALLIVGINETMSALIYSYKKYENNIIVKTINGI 83
Query: 145 KMGFTYGLFIDAFKLAS 161
K+G YGLF+D+FKL S
Sbjct: 84 KIGIIYGLFVDSFKLGS 100
>sp|P48409|YCF20_GALSU Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20
PE=3 SV=1
Length = 83
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 142 NNFKMGFTYGLFIDAFKLAS 161
N FK+G YGL++DAFKL S
Sbjct: 64 NGFKIGLIYGLYLDAFKLGS 83
>sp|A5ABF5|BGLM_ASPNC Probable beta-glucosidase M OS=Aspergillus niger (strain CBS 513.88
/ FGSC A1513) GN=bglM PE=3 SV=1
Length = 765
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 13 VSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENGGPRRLVDIVRLVPELSR 72
++P F FGLS T A G + +++ + A+QE G PR D+V + E+
Sbjct: 621 ITPQFEFGFGLSYTTFAYSGLSIEKTNETTSEYPPSAAIQEGGNPRLWDDLVTVTAEVQN 680
Query: 73 N 73
+
Sbjct: 681 S 681
>sp|P46549|SULU_CAEEL Serine/threonine-protein kinase SULU OS=Caenorhabditis elegans
GN=kin-18 PE=2 SV=1
Length = 982
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 30 SLGRRGISFSSSSAGFRSIRAVQENGGPRRLV 61
S+GR G S SS SA S R++Q +GG LV
Sbjct: 353 SIGRAGDSASSRSASLTSFRSMQSSGGAGLLV 384
>sp|Q9MVP1|YCF20_CYACA Uncharacterized protein ycf20 OS=Cyanidium caldarium GN=ycf20 PE=3
SV=1
Length = 101
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 145 KMGFTYGLFIDAFKLAS 161
K+G YGLFIDAFKL S
Sbjct: 85 KLGLLYGLFIDAFKLGS 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.142 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,470,007
Number of Sequences: 539616
Number of extensions: 2053687
Number of successful extensions: 6152
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6137
Number of HSP's gapped (non-prelim): 12
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)