Query 031338
Match_columns 161
No_of_seqs 114 out of 132
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 20:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdc_A Diacylglycerol kinase; 33.7 63 0.0022 23.9 4.8 67 55-128 5-75 (121)
2 2kyh_A KVAP, voltage-gated pot 24.7 96 0.0033 23.1 4.4 67 67-133 10-79 (147)
3 2a65_A Leutaa, Na(+):neurotran 17.5 1.9E+02 0.0063 26.0 5.5 62 60-124 356-421 (519)
4 2xf7_A GP23.1; viral protein; 15.6 43 0.0015 21.7 0.6 13 148-160 5-17 (51)
5 2zy9_A Mg2+ transporter MGTE; 11.1 7.3E+02 0.025 21.2 7.6 77 79-155 306-394 (473)
6 1p58_D Envelope protein M; fla 7.5 3E+02 0.01 18.8 2.7 26 69-98 30-56 (75)
7 3j27_B Matrix protein, small e 6.7 2.4E+02 0.008 19.3 1.9 26 69-98 30-56 (75)
8 1a62_A RHO; transcription term 6.6 2.2E+02 0.0076 20.9 1.8 41 12-55 80-123 (130)
9 3hd7_B Syntaxin-1A; membrane p 6.1 7.4E+02 0.025 17.2 4.8 21 82-102 87-107 (109)
10 1sy9_B Cyclic-nucleotide-gated 5.7 2.7E+02 0.0091 15.6 1.4 20 53-76 3-22 (26)
No 1
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=33.66 E-value=63 Score=23.88 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=41.3
Q ss_pred CCcchHHHHHHHhhHHHHhHhhc--chhh-hHHHHHHHHHHHHHHHHHHhhhhccccc-hHHHHHHHHHHHHHHHHHh
Q 031338 55 GGPRRLVDIVRLVPELSRNYFRS--PSRR-ALFGGISLLGGFYVAQTISLSFGALGVN-DVIAAVLCVLLTEYVTRFY 128 (161)
Q Consensus 55 ~g~tRL~~ii~~~~~~l~~~~~n--PWRR-~Sl~lIsLL~GFflg~~ist~~Gq~g~w-D~l~A~liVl~~Evi~rl~ 128 (161)
.|-+|+.+..+..-+-+..-+++ ..|- ....++.+..||+++-+ ..+| =.+.+..+|+..|++|--.
T Consensus 5 ~g~~r~~~s~~yA~~Gl~~a~~~E~~fr~~~~~~~~~i~~~~~l~~s-------~~e~~~li~~i~lVl~~EllNTAI 75 (121)
T 2kdc_A 5 TGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVD-------AITRVLLISSVMLVMIVEILNSAI 75 (121)
T ss_dssp SSHHHHHHHHHTHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHCCCC-------CSHHHHHHHHHHHHHHHHTHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665555656555642 3344 55577777788887644 2233 3455677888999987654
No 2
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=24.74 E-value=96 Score=23.06 Aligned_cols=67 Identities=16% Similarity=0.015 Sum_probs=36.9
Q ss_pred hhHHHHhHhhcchhh-hHHHHHHHHHHHHHHHHHHhhhhcccc--chHHHHHHHHHHHHHHHHHhccCCC
Q 031338 67 VPELSRNYFRSPSRR-ALFGGISLLGGFYVAQTISLSFGALGV--NDVIAAVLCVLLTEYVTRFYYSRPK 133 (161)
Q Consensus 67 ~~~~l~~~~~nPWRR-~Sl~lIsLL~GFflg~~ist~~Gq~g~--wD~l~A~liVl~~Evi~rl~Y~r~~ 133 (161)
..+++.+...+|+-. ....++.+-..+++..+...+..+.+. .-.=.+..++..+|++.|+...+.+
T Consensus 10 ~~~~~~~~~e~~~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~k 79 (147)
T 2kyh_A 10 RVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDP 79 (147)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcH
Confidence 346677777777544 444444444555555444322221111 1112345667889999999887654
No 3
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=17.54 E-value=1.9e+02 Score=26.02 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=36.6
Q ss_pred HHHHHHHhhHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHhhh-hccccchHHHH---HHHHHHHHHH
Q 031338 60 LVDIVRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSF-GALGVNDVIAA---VLCVLLTEYV 124 (161)
Q Consensus 60 L~~ii~~~~~~l~~~~~nPWRR~Sl~lIsLL~GFflg~~ist~~-Gq~g~wD~l~A---~liVl~~Evi 124 (161)
.+..++.+-.-+.+.+ +|+|.-..++..+.+|.+|-...+.. | ....|-+++ ..++.+.|.+
T Consensus 356 ~i~~~E~~vt~l~D~~--~~~R~~~~~~v~~~~fllgl~~~~~~~g-~~~~D~~~~~~~l~~~~l~~~i 421 (519)
T 2a65_A 356 SIAIMQPMIAFLEDEL--KLSRKHAVLWTAAIVFFSAHLVMFLNKS-LDEMDFWAGTIGVVFFGLTELI 421 (519)
T ss_dssp HHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHBTTH-HHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHhhHhHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHcCCCC-cchHHHHHhHHHHHHHHHHHHH
Confidence 3444444455555544 46665556666677777777666665 5 555565543 4556667765
No 4
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=15.56 E-value=43 Score=21.69 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.8
Q ss_pred HHHHHHHHHhccC
Q 031338 148 FTYGLFIDAFKLA 160 (161)
Q Consensus 148 llYGLflEAFKLG 160 (161)
++||+|.|..|=|
T Consensus 5 ~L~G~F~D~W~~G 17 (51)
T 2xf7_A 5 LLYGYFLDSWLDG 17 (51)
T ss_dssp TTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 5799999988866
No 5
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=11.14 E-value=7.3e+02 Score=21.25 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHH-------HHHHHHHHHHh---ccC-CC-CCchhhhhhHHHH
Q 031338 79 SRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLC-------VLLTEYVTRFY---YSR-PK-VTFPLALLNNFKM 146 (161)
Q Consensus 79 WRR~Sl~lIsLL~GFflg~~ist~~Gq~g~wD~l~A~li-------Vl~~Evi~rl~---Y~r-~~-~~l~~~lLN~fKI 146 (161)
.+|..++++.++.+++.++.++.+-......-.++.++= -+-++..+.+. ... -. ..++..+...+.+
T Consensus 306 ~~R~~wl~~~~~~~~l~~~vi~~fe~~l~~~~~l~~~~P~v~~~gGn~Gtq~~t~~ir~la~~~~~~~~~~~~~~ke~~~ 385 (473)
T 2zy9_A 306 LARVRWLVILILTGMVTSSILQGFESVLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGV 385 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 477888888888888888877654333222111111110 01112222211 111 11 2244567788888
Q ss_pred HHHHHHHHH
Q 031338 147 GFTYGLFID 155 (161)
Q Consensus 147 GllYGLflE 155 (161)
|++.|+.+-
T Consensus 386 ~~~~g~~~~ 394 (473)
T 2zy9_A 386 GLLLGLTLS 394 (473)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887653
No 6
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=7.48 E-value=3e+02 Score=18.76 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=17.1
Q ss_pred HHHHhHh-hcchhhhHHHHHHHHHHHHHHHH
Q 031338 69 ELSRNYF-RSPSRRALFGGISLLGGFYVAQT 98 (161)
Q Consensus 69 ~~l~~~~-~nPWRR~Sl~lIsLL~GFflg~~ 98 (161)
++.++|. +||+-- ++..+.|+.+|++
T Consensus 30 ~kvE~WilrNp~~a----l~a~~~~w~lG~~ 56 (75)
T 1p58_D 30 QRIETWILRHPGFT----IMAAILAYTIGTT 56 (75)
T ss_pred HHHHHHHHHChHHH----HHHHHHHHHHcCC
Confidence 7788887 677754 3444667776654
No 7
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=6.75 E-value=2.4e+02 Score=19.29 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=16.7
Q ss_pred HHHHhHh-hcchhhhHHHHHHHHHHHHHHHH
Q 031338 69 ELSRNYF-RSPSRRALFGGISLLGGFYVAQT 98 (161)
Q Consensus 69 ~~l~~~~-~nPWRR~Sl~lIsLL~GFflg~~ 98 (161)
++.++|. +||+-- ++..+.|+++|++
T Consensus 30 ~rvE~WilrNp~~a----l~~~~~~w~lG~~ 56 (75)
T 3j27_B 30 QRIETWILRHPGFT----IMAAILAYTIGTT 56 (75)
T ss_dssp HHHHHHHHHCCTHH----HHHHHHHHHSSCS
T ss_pred HHHHHHHHHChHHH----HHHHHHHHHHcCC
Confidence 7888897 688754 3444466665543
No 8
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=6.62 E-value=2.2e+02 Score=20.88 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=27.7
Q ss_pred cCCcccccccccCccceecccccccccCCCCc---cceeeeeeccCC
Q 031338 12 IVSPTILFQFGLSPQTIASLGRRGISFSSSSA---GFRSIRAVQENG 55 (161)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~a~~~~~ 55 (161)
.+||....+||+.++.++.-.-. +++... .+..|.+|++.+
T Consensus 80 yVs~~~irrf~lr~GD~V~g~vr---~~~~~ek~~~l~~v~~vng~~ 123 (130)
T 1a62_A 80 YVSPSQIRRFNLRTGDTISGKIR---PPKEGERYFALLKVNEVNFDK 123 (130)
T ss_dssp EECHHHHHHTTCCTTCEEEEEEE---CCCTTCCSEEEEEEEEETTBC
T ss_pred EECHHHHhHhCCCCCCEEEEEEe---CCCCCCcccceeEEEeECCCC
Confidence 56778888999999998865432 223222 347888888753
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=6.05 E-value=7.4e+02 Score=17.22 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 031338 82 ALFGGISLLGGFYVAQTISLS 102 (161)
Q Consensus 82 ~Sl~lIsLL~GFflg~~ist~ 102 (161)
..+.++.+.++..++..++.+
T Consensus 87 ~i~l~~~~i~~~i~~~~~~~~ 107 (109)
T 3hd7_B 87 IMIIICCVILGIIIASTIGGI 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred eehHHHHHHHHHHHHHHhccc
Confidence 334444555555555554433
No 10
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=5.70 E-value=2.7e+02 Score=15.59 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=9.9
Q ss_pred cCCCcchHHHHHHHhhHHHHhHhh
Q 031338 53 ENGGPRRLVDIVRLVPELSRNYFR 76 (161)
Q Consensus 53 ~~~g~tRL~~ii~~~~~~l~~~~~ 76 (161)
.++|=+|++.+. .-+++|.-
T Consensus 3 rrggfrri~rlv----gv~r~wa~ 22 (26)
T 1sy9_B 3 RRGGFRRIARLV----GVLREWAY 22 (26)
T ss_pred cchhHHHHHHHH----HHHHHHHH
Confidence 344545555544 44555653
Done!