Query 031338
Match_columns 161
No_of_seqs 114 out of 132
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 20:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031338.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031338hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 26.0 53 0.0039 23.7 5.2 75 80-154 9-95 (173)
2 d2ahme1 d.302.1.1 (E:43-197) N 6.1 61 0.0045 23.6 0.3 47 12-58 82-129 (155)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 6.1 2.7E+02 0.02 21.7 4.4 20 111-130 449-468 (472)
4 d1mdwa_ d.3.1.3 (A:) Calpain l 5.3 54 0.0039 25.1 -0.5 26 36-61 236-261 (323)
5 d1h41a2 d.92.2.2 (A:5-151) alp 5.0 1.3E+02 0.0093 20.3 1.5 11 143-153 115-125 (147)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 5.0 2.7E+02 0.02 14.8 3.0 17 84-100 9-25 (32)
7 d1gkza1 a.29.5.1 (A:38-185) Br 5.0 2.6E+02 0.019 19.3 3.2 56 103-158 11-67 (148)
8 d2bgwa1 a.60.2.5 (A:160-229) D 4.9 1.4E+02 0.01 17.6 1.5 14 67-80 57-70 (70)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 4.5 3.3E+02 0.024 21.1 3.9 29 70-98 5-33 (444)
10 d1a62a2 b.40.4.5 (A:48-125) Rh 4.0 2.1E+02 0.015 18.0 1.8 44 12-55 33-76 (78)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=26.02 E-value=53 Score=23.67 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccccchHH-------HHHHHHHHHHHHHHHhc---cC--CCCCchhhhhhHHHHH
Q 031338 80 RRALFGGISLLGGFYVAQTISLSFGALGVNDVI-------AAVLCVLLTEYVTRFYY---SR--PKVTFPLALLNNFKMG 147 (161)
Q Consensus 80 RR~Sl~lIsLL~GFflg~~ist~~Gq~g~wD~l-------~A~liVl~~Evi~rl~Y---~r--~~~~l~~~lLN~fKIG 147 (161)
+|.+|+++.++.|+..+..++.+-......-.+ ++.-==.-++-.....+ .. .++.+...+...+++|
T Consensus 9 ~RlpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~La~fiPli~~~gGN~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vg 88 (173)
T d2yvxa3 9 ARVRWLVILILTGMVTSSILQGFESVLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGVG 88 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTTTTTSCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 588999999999999998887554433222222 21111122222222222 22 2233555677778888
Q ss_pred HHHHHHH
Q 031338 148 FTYGLFI 154 (161)
Q Consensus 148 llYGLfl 154 (161)
++-|+.+
T Consensus 89 ll~G~~l 95 (173)
T d2yvxa3 89 LLLGLTL 95 (173)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
No 2
>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS coronavirus [TaxId: 227859]}
Probab=6.09 E-value=61 Score=23.59 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=28.8
Q ss_pred cCCcccccccccCccceecccccccccCCCCccc-eeeeeeccCCCcc
Q 031338 12 IVSPTILFQFGLSPQTIASLGRRGISFSSSSAGF-RSIRAVQENGGPR 58 (161)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~a~~~~~g~t 58 (161)
.|.-+|-.++-+-....-+|.++..-..-+-.|. |.|.-|+++||..
T Consensus 82 ~IP~~~a~kL~vV~pD~~~~~k~v~~~~v~Yag~vW~I~~v~D~DG~~ 129 (155)
T d2ahme1 82 IIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKI 129 (155)
T ss_dssp CCCCSTTCEEEEEECSHHHHHHHEETTEEEETTEEEEEEEEECTTSCB
T ss_pred eehhhccceeEEEeCCHHHHHHhhcCCeEEEeeeEEEEEEEecCCCCE
Confidence 3333555555444444445555555555555566 9999999999954
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=6.07 E-value=2.7e+02 Score=21.71 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 031338 111 VIAAVLCVLLTEYVTRFYYS 130 (161)
Q Consensus 111 ~l~A~liVl~~Evi~rl~Y~ 130 (161)
...+++++++.|+.=++.++
T Consensus 449 l~~~~~~~~~~El~K~~~R~ 468 (472)
T d1wpga4 449 LKISLPVIGLDEILKFIARN 468 (472)
T ss_dssp HHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34455666777776555443
No 4
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}
Probab=5.32 E-value=54 Score=25.06 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=19.9
Q ss_pred cccCCCCccceeeeeeccCCCcchHH
Q 031338 36 ISFSSSSAGFRSIRAVQENGGPRRLV 61 (161)
Q Consensus 36 ~~~~~~~~~~~~i~a~~~~~g~tRL~ 61 (161)
-+.+.|.+..+.++.+++.++.+||+
T Consensus 236 GL~~~HaY~Vl~~~~v~~~~~~~rlv 261 (323)
T d1mdwa_ 236 KLVKGHAYSVTGAEEVESSGSLQKLI 261 (323)
T ss_dssp SCBTTCCEEEEEEEEEEETTEEEEEE
T ss_pred ccccCceEEEeeEEEEecCCCcEEEE
Confidence 36677888888888888876667765
No 5
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=5.01 E-value=1.3e+02 Score=20.34 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 031338 143 NFKMGFTYGLF 153 (161)
Q Consensus 143 ~fKIGllYGLf 153 (161)
+=+-|.+||.|
T Consensus 115 ~~~rG~LYG~f 125 (147)
T d1h41a2 115 NSDVGVLYGSF 125 (147)
T ss_dssp SSHHHHHHHHH
T ss_pred cCCcchHhHHH
Confidence 34789999987
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.99 E-value=2.7e+02 Score=14.75 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031338 84 FGGISLLGGFYVAQTIS 100 (161)
Q Consensus 84 l~lIsLL~GFflg~~is 100 (161)
+..|+++||.-+|-.++
T Consensus 9 ivfialffgiavgiifa 25 (32)
T d2e74e1 9 IVFIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhheee
Confidence 45677777776665544
No 7
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.97 E-value=2.6e+02 Score=19.26 Aligned_cols=56 Identities=18% Similarity=0.075 Sum_probs=40.5
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHhccC-CCCCchhhhhhHHHHHHHHHHHHHHhc
Q 031338 103 FGALGVNDVIAAVLCVLLTEYVTRFYYSR-PKVTFPLALLNNFKMGFTYGLFIDAFK 158 (161)
Q Consensus 103 ~Gq~g~wD~l~A~liVl~~Evi~rl~Y~r-~~~~l~~~lLN~fKIGllYGLflEAFK 158 (161)
+|...+-+-+.-..--+--|+-+|+-.+- .-..+|..+.+|--|.-+|.+++++|.
T Consensus 11 fG~~~~~~~ll~sa~fl~~ELPiRlA~ri~el~~LP~~l~~np~i~~V~~~Y~~SF~ 67 (148)
T d1gkza1 11 SGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQ 67 (148)
T ss_dssp CCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHhhcCchHHHHHHHHHHHHH
Confidence 44444444455556667889988886542 234578889999999999999999985
No 8
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=4.86 E-value=1.4e+02 Score=17.56 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=9.9
Q ss_pred hhHHHHhHhhcchh
Q 031338 67 VPELSRNYFRSPSR 80 (161)
Q Consensus 67 ~~~~l~~~~~nPWR 80 (161)
..+.+.++|.+||+
T Consensus 57 ~A~~I~~~~~~~~k 70 (70)
T d2bgwa1 57 RAEEIKKILMTPYK 70 (70)
T ss_dssp HHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhCccC
Confidence 35667778888875
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=4.50 E-value=3.3e+02 Score=21.06 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=19.8
Q ss_pred HHHhHhhcchhhhHHHHHHHHHHHHHHHH
Q 031338 70 LSRNYFRSPSRRALFGGISLLGGFYVAQT 98 (161)
Q Consensus 70 ~l~~~~~nPWRR~Sl~lIsLL~GFflg~~ 98 (161)
.+++.++.+..+..+.+++.+.|...|-.
T Consensus 5 ~~~~~~~~~~~~l~~~~la~liGi~~gl~ 33 (444)
T d1otsa_ 5 LIRQLLERDKTPLAILFMAAVVGTLVGLA 33 (444)
T ss_dssp HHHHHTTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777888888888754
No 10
>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=4.01 E-value=2.1e+02 Score=18.02 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=24.3
Q ss_pred cCCcccccccccCccceecccccccccCCCCccceeeeeeccCC
Q 031338 12 IVSPTILFQFGLSPQTIASLGRRGISFSSSSAGFRSIRAVQENG 55 (161)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~~~~ 55 (161)
.+||...-++|++.+..+.-.....-....-..+.+|.+|++.+
T Consensus 33 yVs~s~IrrfgLR~GD~V~G~vr~p~~~ek~~~L~~V~~VNG~~ 76 (78)
T d1a62a2 33 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 76 (78)
T ss_dssp EECHHHHHHTTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTBC
T ss_pred EECHHHHHHhCCCcCcEEEEEEECCCCCCCceeeEEEeeeCCcC
Confidence 35666677899998887654222111111112347777777653
Done!