BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031341
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG
MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY
DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG

High Scoring Gene Products

Symbol, full name Information P value
CRR1
AT5G52100 		protein from Arabidopsis thaliana 8.0e-53

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031341
        (161 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2173043 - symbol:CRR1 "chlororespiration reduc...   547  8.0e-53   1


>TAIR|locus:2173043 [details] [associations]
            symbol:CRR1 "chlororespiration reduction 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008839 "4-hydroxy-tetrahydrodipicolinate
            reductase" evidence=IEA;IGI;ISS] [GO:0009089 "lysine biosynthetic
            process via diaminopimelate" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0055114 "oxidation-reduction
            process" evidence=IEA] [GO:0070402 "NADPH binding" evidence=IEA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0019684
            "photosynthesis, light reaction" evidence=IMP] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0009965 "leaf morphogenesis" evidence=RCA] [GO:0010103
            "stomatal complex morphogenesis" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0016556 "mRNA
            modification" evidence=RCA] [GO:0030154 "cell differentiation"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] InterPro:IPR000846 InterPro:IPR011770
            InterPro:IPR022663 InterPro:IPR023940 Pfam:PF01113 Pfam:PF05173
            PIRSF:PIRSF000161 UniPathway:UPA00034 InterPro:IPR016040
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570
            Gene3D:3.40.50.720 GO:GO:0016491 GO:GO:0070402 GO:GO:0009089
            GO:GO:0019877 EMBL:AB015478 eggNOG:COG0289 KO:K00215
            PANTHER:PTHR20836 EMBL:AY084406 EMBL:BT030092 IPI:IPI00522022
            RefSeq:NP_200023.1 UniGene:At.29638 HSSP:P72024
            ProteinModelPortal:Q9FJ82 SMR:Q9FJ82 STRING:Q9FJ82 PaxDb:Q9FJ82
            PRIDE:Q9FJ82 EnsemblPlants:AT5G52100.1 GeneID:835286
            KEGG:ath:AT5G52100 TAIR:At5g52100 HOGENOM:HOG000227154
            InParanoid:Q9FJ82 OMA:IHVHAVR PhylomeDB:Q9FJ82
            ProtClustDB:CLSN2687455 Genevestigator:Q9FJ82 GO:GO:0019684
            TIGRFAMs:TIGR00036 Uniprot:Q9FJ82
        Length = 298

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 110/151 (72%), Positives = 129/151 (85%)

Query:     9 HCRMHHISQNVKAKR-FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66
             +C    +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKARGME+AGA
Sbjct:     5 NCHFFQLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKARGMELAGA 64

Query:    67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA 126
             +D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD STVY+NVKQA
Sbjct:    65 VDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTVYENVKQA 124

Query:   127 TAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
             TAFGM+SVVYVP I+ ETVSALSA CDKA+M
Sbjct:   125 TAFGMKSVVYVPRIKPETVSALSALCDKATM 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.130   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       161   0.00074  107 3  11 22  0.46    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.32u 0.12s 14.44t   Elapsed:  00:00:01
  Total cpu time:  14.32u 0.12s 14.44t   Elapsed:  00:00:01
  Start:  Fri May 10 22:20:07 2013   End:  Fri May 10 22:20:08 2013

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