BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031341
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJ82|DAPB3_ARATH Putative 4-hydroxy-tetrahydrodipicolinate reductase 3,
chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1
Length = 298
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/159 (71%), Positives = 132/159 (83%), Gaps = 6/159 (3%)
Query: 1 MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
MA + C F +S+++K R SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1 MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56
Query: 59 RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K VVIDFTD ST
Sbjct: 57 RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116
Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157
VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+M
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATM 155
>sp|B8HRK9|DAPB_CYAP4 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp.
(strain PCC 7425 / ATCC 29141) GN=dapB PE=3 SV=1
Length = 275
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
Query: 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
Q I VI+NGA ++GR V AV +A + + GA+D + G+DIG V + PLE+P+
Sbjct: 4 QGAIPVIVNGAAGKMGREVVKAVAQAADLTLFGAVDRNPSLQGQDIGEVVGI-GPLEVPL 62
Query: 91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
++DL +L + +Q V++DFT ++VYDNV+ A A+G+R VV + E + L+
Sbjct: 63 LADLQSLLVAAAQEPQAGVMVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLAT 122
Query: 151 FCDKASM 157
F DKASM
Sbjct: 123 FADKASM 129
>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1
Length = 275
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
Q I V++NGA ++GR + AV +A +++ GA+D + G+DIG V + PLE+PV
Sbjct: 4 QDLIPVVVNGAAGKMGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIA-PLEVPV 62
Query: 91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
++DL VL +Q K + V++DFT S VYDNV+ A A+G+R VV + + + L
Sbjct: 63 LADLQSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGD 122
Query: 151 FCDKAS 156
F +KAS
Sbjct: 123 FAEKAS 128
>sp|B2J0A9|DAPB_NOSP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1
Length = 278
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
Query: 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDMEQPLEIP 89
Q+ I VI+NGA ++GR + AV +A + + GAID HS+ +D G + + +PLE+P
Sbjct: 4 QAPIPVIVNGAAGKMGREVIKAVAQAPDLNLVGAID-HSLEHQDKDAGELAGLSEPLEVP 62
Query: 90 VMSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
+ + L +LG ++ + V++DFT +VYDN++ A A+G+R VV + E +
Sbjct: 63 ITNQLEPMLGYVAGDRQSPPGVIVDFTHPDSVYDNIRSAIAYGIRPVVGTTGLSPEQIQD 122
Query: 148 LSAFCDKAS 156
L+ F DKAS
Sbjct: 123 LADFADKAS 131
>sp|Q8YU19|DAPB_NOSS1 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=dapB PE=3 SV=1
Length = 278
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
Q+ I VI+NGA ++GR V AV +A + + GAIDS G+D G + + +PLE+P+
Sbjct: 4 QAPIPVIVNGAAGKMGREVVKAVAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63
Query: 91 MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
+ L +LG ++ + V++DFT +VYDNV+ A A+G+R VV + + L
Sbjct: 64 TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123
Query: 149 SAFCDKAS 156
+ F +KAS
Sbjct: 124 ADFAEKAS 131
>sp|Q3MFY8|DAPB_ANAVT 4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1
Length = 278
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
Q+ I VI+NGA ++GR V A+ +A + + GAIDS G+D G + + +PLE+P+
Sbjct: 4 QAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63
Query: 91 MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
+ L +LG ++ + V++DFT +VYDNV+ A A+G+R VV + + L
Sbjct: 64 TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123
Query: 149 SAFCDKAS 156
+ F +KAS
Sbjct: 124 ADFAEKAS 131
>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp.
(strain PCC 7424) GN=dapB PE=3 SV=1
Length = 275
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
+S I V++NGA ++G+ + AV++A M + GA+D + GED G V P+E+P+
Sbjct: 4 ESPIPVVVNGAAGKMGKEVIKAVSQAEDMMLVGAVDLNPKYRGEDAGEVAGC-GPVEVPI 62
Query: 91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
+ DL VL +Q K + V++DFT VYDN++ A A+G+R VV + E + L
Sbjct: 63 LDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGE 122
Query: 151 FCDKAS 156
F +KAS
Sbjct: 123 FAEKAS 128
>sp|Q10YI1|DAPB_TRIEI 4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium
erythraeum (strain IMS101) GN=dapB PE=3 SV=1
Length = 275
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SHSVGEDIGMVCDMEQPLEIPV 90
Q++ VI+ GA ++GR + V A M + GAI+ +G+DIG + PLE+P+
Sbjct: 4 QTSTPVIVCGAAGKMGREVIKTVANASDMTLLGAIECQPEYIGQDIGELIG-SGPLEVPI 62
Query: 91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
++DL +L +Q K AV++DFT +VY+NV+ A A+G+R VV + E + L+
Sbjct: 63 LNDLQGILVMAAQEKQPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAE 122
Query: 151 FCDKASM 157
F +KAS+
Sbjct: 123 FAEKASI 129
>sp|Q9S3W8|DAPB_MASLA 4-hydroxy-tetrahydrodipicolinate reductase OS=Mastigocladus
laminosus GN=dapB PE=3 SV=1
Length = 278
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
Q+ I VI+NGA ++GR + AV +A M + GA+D++ G+D G V + +P E+P+
Sbjct: 4 QTPIPVIVNGAAGKMGRETIKAVVQAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPI 63
Query: 91 MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
L +L ++ + V++DFT VYDNV+ A A+G+R VV + + + L
Sbjct: 64 TDQLEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQL 123
Query: 149 SAFCDKAS 156
+ F +KAS
Sbjct: 124 ADFAEKAS 131
>sp|B7JW41|DAPB_CYAP8 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp.
(strain PCC 8801) GN=dapB PE=3 SV=1
Length = 275
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM 91
S I V++NGA ++GR V AV +A M + GA+D + G+D+G V LE+P++
Sbjct: 5 SLIPVVVNGAAGKMGREVVKAVAQAEDMMLVGAVDYNPNYRGQDVGEVAGC-GALEVPIV 63
Query: 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
DL +L +Q K + V++DFT +VY+NV+ A A+G+R VV + E + L+ F
Sbjct: 64 DDLQSILVLATQEKIQGVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLTEEQLKDLADF 123
Query: 152 CDKAS 156
DKAS
Sbjct: 124 ADKAS 128
>sp|Q5N0M4|DAPB_SYNP6 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapB
PE=3 SV=1
Length = 273
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI--DSHSVGEDIGMVCDMEQPLEIPVMSD 93
I V++NGA ++GR + A+ A + + GAI + G+DIG + + PLE+PV +D
Sbjct: 5 IPVVVNGATGKMGRETIKAIAAADDVTLVGAIARSADVQGQDIGEIVGL-GPLEVPVTND 63
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
L +L SQ + VV+DFT +YDNV++A A+G+R VV + E + L+ F +
Sbjct: 64 LEGMLCLASQEREVPVVVDFTHPDCIYDNVRKAIAYGVRPVVGTTGLNNEQLQELAEFAE 123
Query: 154 KASM 157
KAS+
Sbjct: 124 KASV 127
>sp|Q31LA3|DAPB_SYNE7 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus
elongatus (strain PCC 7942) GN=dapB PE=3 SV=1
Length = 273
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI--DSHSVGEDIGMVCDMEQPLEIPVMSD 93
I V++NGA ++GR + A+ A + + GAI + G+DIG + + PLE+PV +D
Sbjct: 5 IPVVVNGATGKMGRETIKAIAAADDVTLVGAIARSADVQGQDIGEIVGL-GPLEVPVTND 63
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
L +L SQ + VV+DFT +YDNV++A A+G+R VV + E + L+ F +
Sbjct: 64 LEGMLCLASQEREVPVVVDFTHPDCIYDNVRKAIAYGVRPVVGTTGLNNEQLQELAEFAE 123
Query: 154 KASM 157
KAS+
Sbjct: 124 KASV 127
>sp|Q8DHH2|DAPB_THEEB 4-hydroxy-tetrahydrodipicolinate reductase OS=Thermosynechococcus
elongatus (strain BP-1) GN=dapB PE=3 SV=1
Length = 276
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL 86
C + P I VI+ GA+ ++GR V AV +A + A+D VGEDIG + L
Sbjct: 5 CMSTP----ISVIVVGALGKMGREVVKAVHQAPDTALYAAVDRKQVGEDIGEALGLGT-L 59
Query: 87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVS 146
EIP+ L V + +Q K V++DFT VY+NV+ A A+G+ VV + E +
Sbjct: 60 EIPISGSLQEVCVAAAQEKQPVVMVDFTHPQAVYENVRMAIAYGVYPVVGTTGLSPEQIE 119
Query: 147 ALSAFCDKASM 157
L+ F DKA M
Sbjct: 120 ELAEFADKADM 130
>sp|B1XIL4|DAPB_SYNP2 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=dapB PE=3 SV=1
Length = 275
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM 91
+ I V+INGA ++GR V AV A ME+ A+D + +G+D G + +E+P++
Sbjct: 5 NKIPVVINGAGGKMGREVVKAVAGAADMEIIAAVDKNPALLGQDAGEIAGC-GAVEVPIV 63
Query: 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
+DL L +QSK + V++DFT S VY N + A A+G+R VV + E ++ L F
Sbjct: 64 NDLEASLVMATQSKIQGVMVDFTHPSGVYANTRAAIAYGVRPVVGTTGLSEEQINDLKEF 123
Query: 152 CDKAS 156
+KAS
Sbjct: 124 AEKAS 128
>sp|Q7NLC0|DAPB_GLOVI 4-hydroxy-tetrahydrodipicolinate reductase OS=Gloeobacter violaceus
(strain PCC 7421) GN=dapB PE=3 SV=1
Length = 269
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
I V++ G ++GR V AV A M V GA+D + ED G + + P+++ V +L
Sbjct: 3 IPVVVVGCAGKMGREVVKAVHAAPDMAVVGAVDRSHIDEDAGELAGI-GPIDVLVTDNLE 61
Query: 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
+ ++Q +A V++DFT +YD V+ A A+G+R VV + E + L+ F DKA
Sbjct: 62 ITCAMVAQERAPGVMVDFTHPRGIYDRVRSAIAYGVRPVVGTTGLPPEHIEELAEFADKA 121
Query: 156 S 156
S
Sbjct: 122 S 122
>sp|B0CE31|DAPB_ACAM1 4-hydroxy-tetrahydrodipicolinate reductase OS=Acaryochloris marina
(strain MBIC 11017) GN=dapB PE=3 SV=1
Length = 275
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Query: 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID------SHSVGEDIGMVCDMEQPLEIPVM 91
VI+ GA ++GR + AV +A + + A+D S GE +G+ L I +
Sbjct: 9 VIVTGAAGKMGREVIKAVVQADDLRLYAAVDRNPDVFSLDAGELVGL-----DTLNIELT 63
Query: 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
++L VL + +Q K V++DFT S+VY N++ A A+G+ V+ + E ++ L+ F
Sbjct: 64 NELEPVLAAAAQEKQPCVMVDFTHPSSVYSNIRSAIAYGVFPVIGTTGLSDEQMNDLTEF 123
Query: 152 CDKASM 157
+KASM
Sbjct: 124 TEKASM 129
>sp|A5GSL5|DAPB_SYNR3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus sp.
(strain RCC307) GN=dapB PE=3 SV=1
Length = 273
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMS 92
I V++ GA+ +G + AV A ++ GAID+ GED+G+ + + LE+ +
Sbjct: 4 QIPVVVAGALGRMGAEVIKAVHTAGDCQLVGAIDTCPGREGEDVGLALGLGE-LEVALTQ 62
Query: 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152
D L SQ AV++DFT VY++ + A A+G+ V+ + E + L++F
Sbjct: 63 DFEGALCLASQQHPGAVLVDFTHPKVVYEHTRAAIAYGVTPVIGTTGLAPEQLQELASFA 122
Query: 153 DKASM 157
KASM
Sbjct: 123 AKASM 127
>sp|Q7V7D4|DAPB_PROMM 4-hydroxy-tetrahydrodipicolinate reductase OS=Prochlorococcus
marinus (strain MIT 9313) GN=dapB PE=3 SV=1
Length = 283
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 17/141 (12%)
Query: 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------SVGEDIGMVCDM 82
T+ P I V++ GA+ +G + AV A E+ GA+D+ +GE++G+
Sbjct: 2 TSVPPELIPVVVVGALGRMGAEVIKAVHLASDCELVGAVDTTPGKEGVEIGEELGIGV-- 59
Query: 83 EQPLEIPVMSDLTMVLGSISQSKAR------AVVIDFTDASTVYDNVKQATAFGMRSVVY 136
L++ + SD+ L S+SQS R AV++DFT S VY++ + A A+G+ V+
Sbjct: 60 ---LDVALTSDIEACLCSVSQSFHRTGPGQGAVLVDFTHPSVVYEHTRAAFAYGVHPVIG 116
Query: 137 VPHIQLETVSALSAFCDKASM 157
+ + + LS F KASM
Sbjct: 117 TTGLSHQQLVDLSEFAAKASM 137
>sp|Q3AYN5|DAPB_SYNS9 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus sp.
(strain CC9902) GN=dapB PE=3 SV=1
Length = 277
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVM 91
S I V++ GA+ +G + AV A ++ GAID+ G D+G+ +++ LE+ V
Sbjct: 3 SPIPVVVAGALGRMGAEVINAVVNAEDCQLVGAIDNTPGKEGTDVGLELGIKE-LEVAVT 61
Query: 92 SDLTMVLGSISQS----KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
+D L ++SQS AV++DFT S V+D+ + A A+G+ V+ + ++
Sbjct: 62 ADFEGCLCAVSQSVRNSDQNAVLVDFTHPSVVFDHTRAAIAYGVHPVIGTTGLSPIQLND 121
Query: 148 LSAFCDKASM 157
L+ F KAS+
Sbjct: 122 LTEFSAKASI 131
>sp|Q7VC38|DAPB_PROMA 4-hydroxy-tetrahydrodipicolinate reductase OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=dapB PE=3
SV=1
Length = 276
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSD 93
I V++ GA+ ++G + A+ K+ E+ AID+ + G DIG M+Q +++ V +D
Sbjct: 4 IPVLVAGALGKMGSEVIKAIYKSNDCELVAAIDNANEMEGVDIGTALGMDQ-MDVAVTAD 62
Query: 94 LTMVL----GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALS 149
L L S+ S AV+IDFT + VY++ + + A+G+ V+ + + + L
Sbjct: 63 LEGSLCVASQSVRNSSGNAVLIDFTHPNVVYEHSRASIAYGVHPVIGTTGLSIVQLEELR 122
Query: 150 AFCDKASM 157
F +KAS+
Sbjct: 123 EFANKASI 130
>sp|Q46KV7|DAPB_PROMT 4-hydroxy-tetrahydrodipicolinate reductase OS=Prochlorococcus
marinus (strain NATL2A) GN=dapB PE=3 SV=1
Length = 282
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSD 93
I V++ GA+ +G V A+ ++ ++ GAID+ G+DIG + + + L++ + SD
Sbjct: 8 IPVLVAGAMGRMGSEVVKAINSSKDFQLVGAIDNQKDKEGQDIGSLLGLGE-LDVFLSSD 66
Query: 94 LTMVLGSISQ------SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
L + SQ S AV++DFT Y + + + A+G+ V+ I + +
Sbjct: 67 FEGSLCAASQNVPKDGSNNGAVLVDFTHPKFAYKHTRTSIAYGVHPVIGTTGITADQLDD 126
Query: 148 LSAFCDKASMVS 159
LS F DKAS+ S
Sbjct: 127 LSKFADKASLGS 138
>sp|Q7V1N1|DAPB_PROMP 4-hydroxy-tetrahydrodipicolinate reductase OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dapB
PE=3 SV=1
Length = 282
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLT 95
V+++GA+ +G V +V + E+ AID++ + GE+I + ++++ ++ V +DL
Sbjct: 11 VLVSGALGRMGSEVVNSVLNSSDCELVAAIDTNKKNNGENISQLLNLKKS-DVLVSNDLE 69
Query: 96 MVLGSISQ----SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
L SISQ K + V++DFT +VY+N + A A+G+ VV + ++ L+ F
Sbjct: 70 GSLCSISQDYRNEKIKPVLVDFTHPDSVYENTRSAIAYGISPVVGTTGLTPSQINDLAIF 129
Query: 152 CDKASM 157
KA++
Sbjct: 130 AQKANI 135
>sp|Q7U807|DAPB_SYNPX 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus sp.
(strain WH8102) GN=dapB PE=3 SV=1
Length = 277
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMS 92
+I V++ GA+ +G + AV + + GAID+ G DIG+ + + LE+ V +
Sbjct: 4 SIPVVVAGALGRMGAEVIKAVVGSADCMLVGAIDNTPGKEGSDIGLELGLGE-LEVAVTA 62
Query: 93 DLTMVLGSISQS----KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
D L ++SQS +A AV++DFT S VY++ + A A+G+ V+ + E +S L
Sbjct: 63 DFEGCLCAVSQSVRDAEAGAVLVDFTHPSVVYEHTRAAIAYGVHPVIGTTGLSPEQLSDL 122
Query: 149 SAFCDKASM 157
F KAS+
Sbjct: 123 CQFAAKASI 131
>sp|Q3AIK8|DAPB_SYNSC 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus sp.
(strain CC9605) GN=dapB PE=3 SV=1
Length = 277
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSD 93
I V++ GA+ +G + AV A + GAID+ G D+ + LE+ V +D
Sbjct: 5 IPVVVAGALGRMGAEVIKAVVGAEDCSLVGAIDNTPGKEGADV-GLELGLGELEVAVTAD 63
Query: 94 LTMVLGSISQS----KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALS 149
L ++SQS + AV++DFT S VY++ + A A+G+ V+ + E ++ L+
Sbjct: 64 FEGCLCAVSQSVRDSGSGAVLVDFTHPSVVYEHTRAAIAYGVHPVIGTTGLSPEQLNDLT 123
Query: 150 AFCDKASM 157
F KAS+
Sbjct: 124 EFSAKASV 131
>sp|B5YEB2|DAPB_DICT6 4-hydroxy-tetrahydrodipicolinate reductase OS=Dictyoglomus
thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
GN=dapB PE=3 SV=1
Length = 268
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVMSDL 94
IK I+ GA ++GR A+ A +E+ GAID + GE + ++ LE
Sbjct: 2 IKTILFGACGKMGRVIGKALIDAVDIELVGAIDPYFKGEKYEKIIGTDKISLE------- 54
Query: 95 TMVLGSISQSKAR-AVVIDFTDASTVYDNVKQATAFGMRSVV 135
VLGSI + K V +DFT+A Y N+K+ G R VV
Sbjct: 55 --VLGSIEELKEDFDVAVDFTNAEAAYQNIKKILQMGKRMVV 94
>sp|Q24UK0|DAPB_DESHY 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfitobacterium
hafniense (strain Y51) GN=dapB PE=3 SV=1
Length = 267
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
I+V ++GA ++GR V + M++ GA D+ G DIG + M PL I +
Sbjct: 2 KKIRVFVSGAGGKMGREVVRTILDQEDMQLVGASDARQQGRDIGELLAM-APLGIEITGP 60
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
L + + +++A +++DFT+ +V N K A A G+ V+ + +S + D
Sbjct: 61 LEVA--HLKETRAD-IMVDFTNPQSVLKNAKCALAAGVVPVLGTTGLDEADISEIRDLVD 117
Query: 154 K 154
+
Sbjct: 118 Q 118
>sp|B8FQZ3|DAPB_DESHD 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfitobacterium
hafniense (strain DCB-2 / DSM 10664) GN=dapB PE=3 SV=1
Length = 267
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
I+V ++GA ++GR V + M++ GA D+ G DIG + M PL I +
Sbjct: 2 KKIRVFVSGAGGKMGREVVRTILDQEDMQLVGASDARQQGRDIGELLAM-APLGIEITGP 60
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
L + + +++A +++DFT+ +V N K A A G+ V+ + +S + D
Sbjct: 61 LEVA--HLKETRAD-IMVDFTNPQSVLKNAKCALAAGVVPVLGTTGLDEADISEIRDLVD 117
Query: 154 K 154
+
Sbjct: 118 Q 118
>sp|Q3A1U6|DAPB_PELCD 4-hydroxy-tetrahydrodipicolinate reductase OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dapB PE=3
SV=1
Length = 267
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI---DSHSVGEDIGMVCDMEQPLEIPVMS 92
IKV +NGA +G + A+ + G+++ GA+ +S +G+D G+ PL++ + S
Sbjct: 2 IKVAVNGAAGRMGGRLITAIKETEGLQLTGALEHAESPMLGQDAGLTAGC-GPLDVLISS 60
Query: 93 DLTMVLGSISQSKARAVVIDFT 114
DL VL KA V+IDFT
Sbjct: 61 DLDEVL------KATDVLIDFT 76
>sp|Q2RJL2|DAPB_MOOTA 4-hydroxy-tetrahydrodipicolinate reductase OS=Moorella
thermoacetica (strain ATCC 39073) GN=dapB PE=3 SV=1
Length = 267
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
+ I+V++ GA +GR + + + V GA+D VG DIG + + P + + D
Sbjct: 3 ATIRVVVTGAAGRMGREMTRGLLQTEDIAVVGAVDRREVGVDIGSLNGL-PPAGVIIQED 61
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
L V+ S V++DFT A+ N + A G+ V+ I LE + L C+
Sbjct: 62 LAGVIASARPE----VMVDFTVAAAALANARLAVEQGVSPVIGTTGISLERLDELHQLCE 117
>sp|B1HTF0|DAPB_LYSSC 4-hydroxy-tetrahydrodipicolinate reductase OS=Lysinibacillus
sphaericus (strain C3-41) GN=dapB PE=3 SV=1
Length = 265
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL 94
+I+V I GA ++G AV V K ME+ +D VG+ + + +P+ +++
Sbjct: 2 SIRVAIAGARGKMGAEAVHTVMKHDKMELVAVLDYKEVGKTLADLDMFPASYTVPIFTEM 61
Query: 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALS 149
+ ++ + V++D T+ +VY++ K+A +R V+ QLE +S ++
Sbjct: 62 H----DLVEATSPDVLVDLTNPHSVYNHTKEALNLNVRPVIGTTGFTDAQLEELSTIA 115
>sp|B6JCI8|DAPB_OLICO 4-hydroxy-tetrahydrodipicolinate reductase OS=Oligotropha
carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
GN=dapB PE=3 SV=1
Length = 272
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
S++++I+ GA +GR + A+ +A G + GA++ S +G+D G++ + P IPV
Sbjct: 2 SDMRLIVAGAGGRMGRTLIHALHEADGAALVGALEAPGSELLGQDSGLLAGL-GPNGIPV 60
Query: 91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
+DL S SK +IDFT + NV A G+ V+ + + + +
Sbjct: 61 SADLW------SLSKDADGIIDFTVPAATIANVAIAAERGIVHVIGTTGLSASDNAVIKS 114
Query: 151 FCDKASMVSTG 161
+A +V +G
Sbjct: 115 VTSRAIVVQSG 125
>sp|A7GN70|DAPB_BACCN 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus
subsp. cytotoxis (strain NVH 391-98) GN=dapB PE=3 SV=1
Length = 266
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
+IKVII G +G AV+ + + + A+D GE I + M L++P+ D
Sbjct: 2 KDIKVIIAGPRGRMGHEAVLLMERTPHFQFVAAVDYKHGGEKISDLPGM-PALDVPIYED 60
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
L L I V++D T +V A G+RSV+
Sbjct: 61 LHTCLDEIEAD----VLLDLTTPEVGKKHVTLAVEHGLRSVI 98
>sp|Q21CH6|DAPB_RHOPB 4-hydroxy-tetrahydrodipicolinate reductase OS=Rhodopseudomonas
palustris (strain BisB18) GN=dapB PE=3 SV=1
Length = 271
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPV 90
S++++I+ GA +GRA + A+T+ G VAGA+++ + +G+D G + + P + +
Sbjct: 2 SDMRLIVAGAGGRMGRALIRAITETPGAVVAGALEAPTSALLGQDAGTLAGL-PPSGVKL 60
Query: 91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
+DL + ++A +V DFT NV A GM V+ + + +S+
Sbjct: 61 SADLWAL-----SAEADGIV-DFTVPEATIANVAIAAQRGMVHVIGTTGLTASDDAVISS 114
Query: 151 FCDKASMVSTG 161
+A++V +G
Sbjct: 115 VTSRATVVKSG 125
>sp|Q0AXH2|DAPB_SYNWW 4-hydroxy-tetrahydrodipicolinate reductase OS=Syntrophomonas wolfei
subsp. wolfei (strain Goettingen) GN=dapB PE=3 SV=1
Length = 266
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
+VI+ GA+ ++G+ + A+ +E+ A+D + GE + + + L+I + +DL
Sbjct: 6 RVIVAGALGKMGKETLKAIAGDEELELIAAVDIKAKGEKVADLIGI-AGLDISLENDLDE 64
Query: 97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
VL + V++DFT+ V++N + A G+ V+
Sbjct: 65 VLENYQPD----VLVDFTNPQAVFNNARSALKIGVFCVI 99
>sp|Q8EQD3|DAPB_OCEIH 4-hydroxy-tetrahydrodipicolinate reductase OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=dapB PE=3 SV=1
Length = 265
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
I +I+ G +G AV +TK + +D G ++G + L++P+ +D+
Sbjct: 3 INIIVAGPRGRMGYEAVQMITKEDSFRLVACLDHKHDGLNLGELEQFSDDLQVPIYTDID 62
Query: 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
L Q +A V +D T Y + K A + +R VV E +S L
Sbjct: 63 SCL---KQHQA-DVFVDLTTPEVGYKHTKTALEYKVRPVVGTTGFTDEQLSELKEL 114
>sp|B8E2S7|DAPB_DICTD 4-hydroxy-tetrahydrodipicolinate reductase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=dapB PE=3 SV=1
Length = 268
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVMSDL 94
IK ++ GA ++G+ A+ A +E+ GAID + GE + +++ LE
Sbjct: 2 IKTVLFGACGKMGKVIGKALIDATDIELVGAIDPYFKGEKYEKIIGIDKISLE------- 54
Query: 95 TMVLGSISQSKAR-AVVIDFTDASTVYDNVKQATAFGMRSVV 135
V+ SI + + V IDFT+A Y N+K+ G R VV
Sbjct: 55 --VVESIDELQEDFDVAIDFTNAEAAYQNIKKVLQKGKRMVV 94
>sp|A6VFL4|DAPB_METM7 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=dapB PE=3
SV=1
Length = 270
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SH-SVGEDIGMVCDMEQPLEIPVMS 92
+KV + GA+ +G + +T+ G++V AID +H G+DIG + + + I V
Sbjct: 2 VKVAVTGALGRMGSGIIKTITETDGLDVVAAIDIPNHPKKGQDIGELTGLGK---IGVSL 58
Query: 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSAL 148
+ L +I + V++DFT A+ + K A G+ V+ + P + E +A+
Sbjct: 59 STSDELEAILKESGAEVLVDFTAAAPCVNTAKTAAKLGVNLVIGTTGFTPEQRAEMENAI 118
Query: 149 S 149
S
Sbjct: 119 S 119
>sp|B4UHF2|DAPB_ANASK 4-hydroxy-tetrahydrodipicolinate reductase OS=Anaeromyxobacter sp.
(strain K) GN=dapB PE=3 SV=1
Length = 270
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPVMSD 93
KV++ GA +G V V G+ V+GA++ S ++G+D G + E PL + VM D
Sbjct: 3 KVVVTGAAGRMGTQIVRLVRATPGLAVSGAVERAGSPAIGKDAGTLAGGE-PLGVAVMDD 61
Query: 94 LTMVLGSISQSKARAVVIDFT 114
L L VVIDFT
Sbjct: 62 LARALAGAD------VVIDFT 76
>sp|O29353|DAPB_ARCFU 4-hydroxy-tetrahydrodipicolinate reductase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=dapB PE=3 SV=1
Length = 257
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
++V ++GA +GR V+ A G++V A D + VG+D G + + + + +P+ D++
Sbjct: 1 MRVAVSGAAGRMGRL-VVKNAVAEGLKVVQAFDINEVGKDAGELAGVGK-IGVPIEDDIS 58
Query: 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
+ V+IDFT A N + A G+R V+ E L+ +K
Sbjct: 59 KLDAD--------VLIDFTTAEAAMKNAEVAAEKGVRVVMGTTGFTDEDRKRLAELAEKV 110
Query: 156 SMV 158
M+
Sbjct: 111 PMI 113
>sp|B8DC19|DAPB_LISMH 4-hydroxy-tetrahydrodipicolinate reductase OS=Listeria
monocytogenes serotype 4a (strain HCC23) GN=dapB PE=3
SV=1
Length = 263
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
++V ++G +G V V + +E+ +D ++I + + L++PV +L+
Sbjct: 1 MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEIVEF-SSLDVPVFGNLS 59
Query: 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
+L I V+DFT Y N K G+R+VV E +S L + +
Sbjct: 60 EMLEEIKPD----CVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRSIAE 113
>sp|Q71YA8|DAPB_LISMF 4-hydroxy-tetrahydrodipicolinate reductase OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=dapB PE=3
SV=1
Length = 263
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
++V ++G +G V V + +E+ +D ++I + + L++PV +L+
Sbjct: 1 MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEIVEF-SSLDVPVFGNLS 59
Query: 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
+L I V+DFT Y N K G+R+VV E +S L + +
Sbjct: 60 EMLEEIKPD----CVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRSIAE 113
>sp|A9AB21|DAPB_METM6 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=dapB PE=3
SV=1
Length = 270
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SH-SVGEDIGMVCDMEQPLEIPVMS 92
+KV + GA+ +G + +T+ G++V AID +H G DIG + + + I V+
Sbjct: 2 VKVAVTGALGRMGSGIIKTITETDGLDVVAAIDIPNHPKKGLDIGELTGLGK---IGVLL 58
Query: 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSAL 148
+ L + + V++DFT A+ + K A+ G+ V+ + P + E A+
Sbjct: 59 STSDELEDVLKESGAEVLVDFTAAAPCVNTAKTASKLGVNLVIGTTGFTPEQRAEMEKAI 118
Query: 149 S 149
S
Sbjct: 119 S 119
>sp|C1KWK7|DAPB_LISMC 4-hydroxy-tetrahydrodipicolinate reductase OS=Listeria
monocytogenes serotype 4b (strain CLIP80459) GN=dapB
PE=3 SV=1
Length = 263
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
++V ++G +G V V + +E+ +D ++I + + L++PV +L+
Sbjct: 1 MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEIVEF-SSLDVPVFGNLS 59
Query: 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
+L I V+DFT Y N K G+R+VV E +S L + +
Sbjct: 60 EMLEEIKPD----CVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRSIAE 113
>sp|B9M381|DAPB_GEOSF 4-hydroxy-tetrahydrodipicolinate reductase OS=Geobacter sp. (strain
FRC-32) GN=dapB PE=3 SV=1
Length = 267
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMS 92
+KV + GA +G+ ++A+T+A G E++GA++ VG+D G++ + L++ +
Sbjct: 2 VKVAVCGAAGRMGQRIIVAITEAEGAELSGALERPGHPLVGQDAGILAGCGE-LKVKISD 60
Query: 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
D+ V+ V+IDFT N+ +A A +S+V
Sbjct: 61 DINAVVEGCD------VLIDFTTPKVSLKNL-EACALKKKSIV 96
>sp|A7HZ36|DAPB_PARL1 4-hydroxy-tetrahydrodipicolinate reductase OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=dapB PE=3 SV=1
Length = 271
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPV 90
++IK+++ GA +GR + + + G+ +AG ++ +G D+G + + QP +
Sbjct: 3 ADIKIVVTGAAGRMGRTLIRLIHETEGLSLAGGLEGEGSPYLGTDLGTLAGLAQPTGLAA 62
Query: 91 MSD-LTMVLGSISQSKARAVVIDFT 114
+D LT++ K +IDF+
Sbjct: 63 TADALTLI-------KDADALIDFS 80
>sp|Q73AW1|DAPB_BACC1 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus
(strain ATCC 10987) GN=dapB PE=3 SV=1
Length = 266
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
IKVII G +G AV+ + + + A+D GE I + M L+ P+ +D
Sbjct: 2 KEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGM-PALDTPIYAD 60
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
L L + V++D T +V A G+RSV+
Sbjct: 61 LHTCLEEVEAD----VLLDLTTPEVGKQHVTLAVERGLRSVI 98
>sp|Q6LYR5|DAPB_METMP 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain S2 / LL) GN=dapB PE=3 SV=1
Length = 270
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SH-SVGEDIGMVCDMEQPLEIPVMS 92
+KV + GA+ +G + +T+ G++V AID +H G+D+G + + + I V
Sbjct: 2 VKVAVTGALGRMGSGIIKTITETDGLDVVAAIDIPNHPKKGQDVGELTGLGK---IGVAL 58
Query: 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSAL 148
+ L ++ + V++DFT A+ K A+ G+ V+ + P + E A+
Sbjct: 59 STSDELEAVLKESGAEVLVDFTAAAPCVQTAKTASKLGVNLVIGTTGFTPEQRAEMEDAI 118
Query: 149 S 149
S
Sbjct: 119 S 119
>sp|Q63DK0|DAPB_BACCZ 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus
(strain ZK / E33L) GN=dapB PE=3 SV=1
Length = 266
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
IKVII G +G AV+ + + + A+D GE I + M L+ P+ +D
Sbjct: 2 KEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGM-PALDAPIYAD 60
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
L L + V++D T +V A G+RSV+
Sbjct: 61 LHTCLEEVEAD----VLLDLTTPEVGKQHVTLAVERGLRSVI 98
>sp|B9IVQ5|DAPB_BACCQ 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus
(strain Q1) GN=dapB PE=3 SV=1
Length = 266
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
IKVII G +G AV+ + + + A+D GE I + M L+ P+ D
Sbjct: 2 KEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGM-PALDTPIYGD 60
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
L L + V++D T +V A G+RSV+
Sbjct: 61 LHTCLEEVEAD----VLLDLTTPEVGKQHVTLAVERGLRSVI 98
>sp|B7HL46|DAPB_BACC7 4-hydroxy-tetrahydrodipicolinate reductase OS=Bacillus cereus
(strain AH187) GN=dapB PE=3 SV=1
Length = 266
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
IKVII G +G AV+ + + + A+D GE I + M L+ P+ D
Sbjct: 2 KEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGM-PALDTPIYGD 60
Query: 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135
L L + V++D T +V A G+RSV+
Sbjct: 61 LHTCLEEVEAD----VLLDLTTPEVGKQHVTLAVERGLRSVI 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,514,477
Number of Sequences: 539616
Number of extensions: 1617705
Number of successful extensions: 5169
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 5070
Number of HSP's gapped (non-prelim): 220
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)