Query 031341
Match_columns 161
No_of_seqs 141 out of 1045
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 12:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01113 DapB_N: Dihydrodipico 100.0 6.9E-31 1.5E-35 194.5 12.6 119 36-161 1-122 (124)
2 COG0289 DapB Dihydrodipicolina 100.0 1.3E-27 2.8E-32 196.3 14.2 121 34-161 1-124 (266)
3 TIGR00036 dapB dihydrodipicoli 99.9 4.9E-24 1.1E-28 176.2 15.2 119 35-160 1-124 (266)
4 PLN02775 Probable dihydrodipic 99.9 5.6E-24 1.2E-28 177.3 14.3 124 30-160 6-133 (286)
5 TIGR02130 dapB_plant dihydrodi 99.9 4.3E-23 9.4E-28 171.2 13.6 114 36-160 1-122 (275)
6 PRK00048 dihydrodipicolinate r 99.9 3.1E-22 6.7E-27 164.5 14.4 114 35-160 1-114 (257)
7 PF01408 GFO_IDH_MocA: Oxidore 99.8 1.4E-17 3.1E-22 120.2 12.1 113 36-158 1-115 (120)
8 PRK13303 L-aspartate dehydroge 99.7 3.3E-16 7.1E-21 129.4 13.3 113 35-158 1-115 (265)
9 COG0673 MviM Predicted dehydro 99.6 1.4E-15 3E-20 127.1 11.8 117 34-159 2-121 (342)
10 PRK11579 putative oxidoreducta 99.6 3.8E-15 8.2E-20 126.4 13.1 113 35-159 4-118 (346)
11 COG4091 Predicted homoserine d 99.6 1E-14 2.2E-19 124.4 9.8 124 33-161 15-157 (438)
12 PRK10206 putative oxidoreducta 99.6 3.4E-14 7.4E-19 121.0 11.9 114 35-159 1-118 (344)
13 TIGR01761 thiaz-red thiazoliny 99.6 3.2E-14 7E-19 121.8 11.4 114 34-159 2-118 (343)
14 PRK13304 L-aspartate dehydroge 99.5 7.6E-14 1.6E-18 115.3 12.2 111 35-157 1-114 (265)
15 KOG2741 Dimeric dihydrodiol de 99.5 2.5E-13 5.4E-18 115.5 12.1 118 32-159 3-126 (351)
16 PRK13302 putative L-aspartate 99.5 8.8E-13 1.9E-17 109.4 12.3 111 35-158 6-118 (271)
17 PRK06270 homoserine dehydrogen 99.5 6.3E-13 1.4E-17 113.5 11.2 120 35-159 2-147 (341)
18 PRK06349 homoserine dehydrogen 99.4 2.3E-12 5E-17 113.0 11.5 113 35-158 3-125 (426)
19 TIGR01921 DAP-DH diaminopimela 99.4 3.1E-12 6.8E-17 108.8 11.7 113 35-161 3-120 (324)
20 PF03447 NAD_binding_3: Homose 99.4 1.8E-12 3.9E-17 94.1 6.9 108 43-158 1-113 (117)
21 PRK04207 glyceraldehyde-3-phos 99.3 1.1E-11 2.4E-16 106.0 10.5 96 35-138 1-110 (341)
22 PRK13301 putative L-aspartate 99.2 1.2E-10 2.6E-15 96.6 12.5 108 36-156 3-114 (267)
23 TIGR03215 ac_ald_DH_ac acetald 99.2 8.2E-11 1.8E-15 98.6 11.0 96 35-139 1-97 (285)
24 PRK08374 homoserine dehydrogen 99.2 9.5E-11 2.1E-15 100.0 10.8 117 35-156 2-141 (336)
25 PF01118 Semialdhyde_dh: Semia 99.2 1.9E-10 4.2E-15 84.2 10.1 94 37-137 1-97 (121)
26 PRK08300 acetaldehyde dehydrog 99.2 1.9E-10 4.2E-15 97.0 10.7 97 34-139 3-103 (302)
27 COG1712 Predicted dinucleotide 99.2 2.9E-10 6.3E-15 92.3 11.2 109 36-156 1-112 (255)
28 PLN02819 lysine-ketoglutarate 99.1 1.1E-09 2.5E-14 104.7 12.6 115 34-159 568-699 (1042)
29 PRK00436 argC N-acetyl-gamma-g 99.1 8.8E-10 1.9E-14 94.3 10.5 99 35-138 2-100 (343)
30 PRK06392 homoserine dehydrogen 99.0 2.8E-09 6.2E-14 90.8 11.2 117 36-158 1-137 (326)
31 COG3804 Uncharacterized conser 99.0 3E-09 6.5E-14 88.9 10.6 113 36-157 3-124 (350)
32 TIGR03855 NAD_NadX aspartate d 98.9 5.6E-09 1.2E-13 85.0 9.1 89 60-158 1-91 (229)
33 PF02629 CoA_binding: CoA bind 98.8 1.1E-07 2.3E-12 67.2 10.2 90 34-135 2-91 (96)
34 PRK06813 homoserine dehydrogen 98.8 7.5E-08 1.6E-12 82.8 11.1 120 35-158 2-143 (346)
35 TIGR01850 argC N-acetyl-gamma- 98.7 1E-07 2.2E-12 81.8 10.8 96 36-137 1-99 (346)
36 PRK08664 aspartate-semialdehyd 98.7 8.7E-08 1.9E-12 82.1 10.3 96 35-137 3-107 (349)
37 TIGR00978 asd_EA aspartate-sem 98.7 1.2E-07 2.5E-12 81.1 10.4 93 36-135 1-102 (341)
38 PF03446 NAD_binding_2: NAD bi 98.7 2.3E-07 5E-12 71.1 9.9 109 35-159 1-115 (163)
39 COG0460 ThrA Homoserine dehydr 98.7 1.9E-07 4.2E-12 79.8 10.3 115 34-158 2-134 (333)
40 PLN02968 Probable N-acetyl-gam 98.6 2E-07 4.3E-12 81.1 10.0 95 34-135 37-132 (381)
41 PF00044 Gp_dh_N: Glyceraldehy 98.6 9.9E-08 2.1E-12 73.2 6.9 99 36-138 1-121 (151)
42 COG0057 GapA Glyceraldehyde-3- 98.6 1.6E-07 3.6E-12 80.0 8.8 101 35-139 1-124 (335)
43 PRK14874 aspartate-semialdehyd 98.6 5.5E-07 1.2E-11 76.8 12.0 88 35-134 1-91 (334)
44 PTZ00187 succinyl-CoA syntheta 98.6 1E-06 2.2E-11 75.0 13.0 112 35-158 29-142 (317)
45 COG0074 SucD Succinyl-CoA synt 98.6 4.4E-07 9.5E-12 75.8 10.2 113 35-161 8-121 (293)
46 COG0002 ArgC Acetylglutamate s 98.6 3.1E-07 6.8E-12 78.7 9.3 95 34-134 1-98 (349)
47 PRK05678 succinyl-CoA syntheta 98.6 1.7E-06 3.7E-11 72.8 13.6 113 35-161 8-121 (291)
48 smart00846 Gp_dh_N Glyceraldeh 98.6 4.3E-07 9.3E-12 69.4 9.2 98 36-138 1-120 (149)
49 TIGR01019 sucCoAalpha succinyl 98.6 1.5E-06 3.4E-11 72.9 13.3 113 35-161 6-119 (286)
50 TIGR01546 GAPDH-II_archae glyc 98.6 2.2E-07 4.7E-12 79.6 8.2 94 38-138 1-108 (333)
51 PRK05671 aspartate-semialdehyd 98.5 9.5E-07 2.1E-11 75.7 10.6 89 34-134 3-94 (336)
52 PLN00125 Succinyl-CoA ligase [ 98.5 3.1E-06 6.7E-11 71.6 13.2 112 36-161 13-126 (300)
53 PRK11863 N-acetyl-gamma-glutam 98.5 1.7E-06 3.7E-11 73.5 11.5 76 35-134 2-78 (313)
54 PRK08040 putative semialdehyde 98.5 1.3E-06 2.8E-11 74.9 9.9 89 34-134 3-94 (336)
55 smart00859 Semialdhyde_dh Semi 98.5 1.2E-06 2.5E-11 63.8 8.3 91 37-134 1-96 (122)
56 PRK09436 thrA bifunctional asp 98.4 1.9E-06 4E-11 81.5 11.1 123 34-159 464-603 (819)
57 PRK07634 pyrroline-5-carboxyla 98.4 4.8E-06 1.1E-10 67.0 11.6 103 35-148 4-110 (245)
58 TIGR01851 argC_other N-acetyl- 98.4 4.4E-06 9.5E-11 71.0 11.1 75 36-134 2-77 (310)
59 PF13380 CoA_binding_2: CoA bi 98.4 3.3E-06 7.2E-11 61.8 9.1 101 37-159 2-105 (116)
60 COG1748 LYS9 Saccharopine dehy 98.4 2.1E-06 4.5E-11 74.9 9.1 114 35-158 1-118 (389)
61 PLN02383 aspartate semialdehyd 98.4 3.7E-06 8.1E-11 72.2 10.6 90 32-134 4-97 (344)
62 PF03807 F420_oxidored: NADP o 98.4 4.3E-06 9.3E-11 58.0 8.9 88 37-136 1-93 (96)
63 PF03435 Saccharop_dh: Sacchar 98.3 4E-06 8.7E-11 72.0 10.1 110 38-158 1-117 (386)
64 PRK09466 metL bifunctional asp 98.3 5.5E-06 1.2E-10 78.3 11.1 120 34-158 457-596 (810)
65 PRK05472 redox-sensing transcr 98.3 4.7E-06 1E-10 66.6 9.2 90 34-135 83-175 (213)
66 TIGR01296 asd_B aspartate-semi 98.3 7.5E-06 1.6E-10 70.1 10.7 86 37-134 1-89 (339)
67 PRK06728 aspartate-semialdehyd 98.3 7.7E-06 1.7E-10 70.5 10.5 88 34-134 4-96 (347)
68 PLN02700 homoserine dehydrogen 98.3 6.4E-06 1.4E-10 71.7 9.8 115 35-154 3-157 (377)
69 PRK11880 pyrroline-5-carboxyla 98.3 1.2E-05 2.6E-10 65.7 10.6 101 35-147 2-104 (267)
70 PRK08955 glyceraldehyde-3-phos 98.2 5.6E-06 1.2E-10 71.0 8.7 95 35-136 2-118 (334)
71 PRK11559 garR tartronate semia 98.2 1.4E-05 3E-10 66.3 10.8 106 35-156 2-114 (296)
72 PRK06598 aspartate-semialdehyd 98.2 8E-06 1.7E-10 70.9 9.5 85 35-132 1-91 (369)
73 PRK14618 NAD(P)H-dependent gly 98.2 8.7E-06 1.9E-10 68.7 9.2 109 35-153 4-122 (328)
74 PLN02358 glyceraldehyde-3-phos 98.2 6.9E-06 1.5E-10 70.5 8.5 96 35-135 5-124 (338)
75 PRK06476 pyrroline-5-carboxyla 98.2 1.5E-05 3.3E-10 65.0 10.0 101 36-149 1-105 (258)
76 PRK12490 6-phosphogluconate de 98.2 3.7E-05 7.9E-10 64.4 12.1 109 36-157 1-113 (299)
77 PRK07679 pyrroline-5-carboxyla 98.2 3.8E-05 8.3E-10 63.5 11.7 111 36-160 4-120 (279)
78 PRK05447 1-deoxy-D-xylulose 5- 98.1 1.6E-05 3.5E-10 69.3 9.8 118 35-156 1-141 (385)
79 PRK06928 pyrroline-5-carboxyla 98.1 3.4E-05 7.4E-10 64.0 11.3 102 35-148 1-109 (277)
80 PF10727 Rossmann-like: Rossma 98.1 2.8E-06 6.1E-11 63.4 4.3 92 34-140 9-106 (127)
81 PLN02688 pyrroline-5-carboxyla 98.1 3E-05 6.6E-10 63.2 10.7 99 36-148 1-106 (266)
82 PRK09599 6-phosphogluconate de 98.1 6.2E-05 1.4E-09 62.9 12.2 111 36-159 1-115 (301)
83 PTZ00023 glyceraldehyde-3-phos 98.1 1.9E-05 4.2E-10 67.8 8.7 98 35-137 2-121 (337)
84 COG2344 AT-rich DNA-binding pr 98.1 1.8E-05 3.9E-10 63.0 7.6 88 33-135 82-175 (211)
85 COG0345 ProC Pyrroline-5-carbo 98.0 4.6E-05 9.9E-10 63.5 10.0 109 35-158 1-113 (266)
86 TIGR01532 E4PD_g-proteo D-eryt 98.0 2.9E-05 6.3E-10 66.4 8.5 97 37-138 1-122 (325)
87 TIGR02717 AcCoA-syn-alpha acet 98.0 9.1E-05 2E-09 65.6 11.8 108 35-161 7-126 (447)
88 PRK15461 NADH-dependent gamma- 98.0 7.6E-05 1.6E-09 62.4 10.6 107 35-157 1-114 (296)
89 COG0136 Asd Aspartate-semialde 98.0 3.5E-05 7.5E-10 66.0 8.6 94 35-137 1-97 (334)
90 PRK07680 late competence prote 98.0 7.3E-05 1.6E-09 61.6 10.3 100 36-147 1-106 (273)
91 PRK15425 gapA glyceraldehyde-3 98.0 4.4E-05 9.6E-10 65.4 9.0 97 36-137 3-120 (331)
92 PLN02237 glyceraldehyde-3-phos 98.0 3E-05 6.6E-10 68.6 8.0 99 34-137 74-196 (442)
93 PLN03096 glyceraldehyde-3-phos 98.0 3.3E-05 7.1E-10 67.6 8.1 98 35-137 60-181 (395)
94 PRK07403 glyceraldehyde-3-phos 98.0 3E-05 6.4E-10 66.7 7.6 98 35-137 1-121 (337)
95 PRK07729 glyceraldehyde-3-phos 97.9 5.6E-05 1.2E-09 65.1 8.9 98 35-137 2-120 (343)
96 PRK13535 erythrose 4-phosphate 97.9 3.6E-05 7.8E-10 66.1 7.6 98 35-137 1-122 (336)
97 PRK00094 gpsA NAD(P)H-dependen 97.9 6.9E-05 1.5E-09 62.4 9.0 100 35-143 1-111 (325)
98 COG1023 Gnd Predicted 6-phosph 97.9 7.3E-05 1.6E-09 61.9 8.7 94 36-138 1-121 (300)
99 TIGR03450 mycothiol_INO1 inosi 97.9 0.0002 4.4E-09 61.5 11.5 119 36-161 1-180 (351)
100 PTZ00431 pyrroline carboxylate 97.9 0.00019 4.1E-09 58.9 11.2 94 36-149 4-102 (260)
101 PRK12491 pyrroline-5-carboxyla 97.9 0.00014 3.1E-09 60.3 10.3 101 36-149 3-109 (272)
102 PRK15059 tartronate semialdehy 97.9 0.0002 4.3E-09 60.0 11.2 106 36-158 1-113 (292)
103 TIGR00872 gnd_rel 6-phosphoglu 97.9 0.00026 5.6E-09 59.2 11.8 93 36-140 1-96 (298)
104 TIGR01505 tartro_sem_red 2-hyd 97.9 0.00025 5.5E-09 58.8 11.4 104 37-156 1-111 (291)
105 cd01076 NAD_bind_1_Glu_DH NAD( 97.8 0.0001 2.2E-09 60.0 8.3 112 34-159 30-155 (227)
106 PLN02272 glyceraldehyde-3-phos 97.8 0.0001 2.3E-09 65.0 8.5 98 35-137 85-206 (421)
107 PF01210 NAD_Gly3P_dh_N: NAD-d 97.8 6.7E-05 1.4E-09 57.2 6.3 95 37-140 1-106 (157)
108 PLN02256 arogenate dehydrogena 97.7 0.00056 1.2E-08 57.8 11.9 78 34-126 35-112 (304)
109 COG2910 Putative NADH-flavin r 97.7 7.3E-05 1.6E-09 59.6 5.7 34 36-70 1-34 (211)
110 COG2084 MmsB 3-hydroxyisobutyr 97.7 0.00061 1.3E-08 57.4 11.3 108 36-158 1-115 (286)
111 PLN02712 arogenate dehydrogena 97.7 0.00084 1.8E-08 62.4 13.0 103 34-151 368-473 (667)
112 PF05368 NmrA: NmrA-like famil 97.7 0.00017 3.7E-09 57.3 7.4 90 38-136 1-100 (233)
113 PLN02712 arogenate dehydrogena 97.7 0.00074 1.6E-08 62.8 12.3 105 33-152 50-157 (667)
114 TIGR00715 precor6x_red precorr 97.6 0.00023 4.9E-09 59.0 7.7 87 36-134 1-96 (256)
115 PRK14619 NAD(P)H-dependent gly 97.6 0.00052 1.1E-08 57.6 10.0 80 36-144 5-89 (308)
116 PLN02350 phosphogluconate dehy 97.6 0.00048 1E-08 62.0 10.2 117 33-159 4-128 (493)
117 PRK08618 ornithine cyclodeamin 97.6 0.00013 2.7E-09 62.0 6.1 91 36-137 128-222 (325)
118 PRK14620 NAD(P)H-dependent gly 97.6 0.00096 2.1E-08 56.1 11.3 99 36-142 1-111 (326)
119 PTZ00345 glycerol-3-phosphate 97.6 0.00067 1.5E-08 58.9 10.6 104 34-144 10-136 (365)
120 PTZ00434 cytosolic glyceraldeh 97.6 0.00035 7.7E-09 60.5 8.3 97 35-136 3-135 (361)
121 COG0240 GpsA Glycerol-3-phosph 97.5 0.00081 1.7E-08 57.7 10.0 112 35-155 1-123 (329)
122 PF13460 NAD_binding_10: NADH( 97.5 0.00029 6.3E-09 53.5 6.6 83 38-134 1-93 (183)
123 TIGR01692 HIBADH 3-hydroxyisob 97.5 0.0013 2.7E-08 54.7 10.9 103 40-158 1-110 (288)
124 PTZ00142 6-phosphogluconate de 97.5 0.0017 3.7E-08 58.1 12.3 116 35-159 1-122 (470)
125 PLN02696 1-deoxy-D-xylulose-5- 97.5 0.00095 2.1E-08 59.4 10.4 118 35-156 57-199 (454)
126 PRK08655 prephenate dehydrogen 97.5 0.0018 3.9E-08 57.3 11.9 104 36-153 1-107 (437)
127 COG4693 PchG Oxidoreductase (N 97.5 0.00034 7.4E-09 59.0 6.9 107 37-157 6-117 (361)
128 KOG1255 Succinyl-CoA synthetas 97.5 0.00058 1.2E-08 56.6 8.1 100 36-149 39-139 (329)
129 TIGR03376 glycerol3P_DH glycer 97.4 0.00023 5E-09 61.2 5.4 98 37-143 1-122 (342)
130 PRK07502 cyclohexadienyl dehyd 97.4 0.0038 8.3E-08 52.2 12.4 101 36-151 7-113 (307)
131 TIGR01534 GAPDH-I glyceraldehy 97.4 0.00068 1.5E-08 58.1 7.7 96 37-137 1-121 (327)
132 TIGR01915 npdG NADPH-dependent 97.4 0.0026 5.7E-08 50.8 10.5 98 36-141 1-105 (219)
133 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0013 2.9E-08 53.1 8.7 104 35-148 23-139 (217)
134 COG3367 Uncharacterized conser 97.4 0.00056 1.2E-08 58.4 6.7 103 48-157 15-123 (339)
135 KOG0409 Predicted dehydrogenas 97.4 0.002 4.3E-08 54.8 9.9 119 21-155 22-147 (327)
136 CHL00194 ycf39 Ycf39; Provisio 97.3 0.00086 1.9E-08 55.9 7.7 33 36-69 1-33 (317)
137 PRK09414 glutamate dehydrogena 97.3 0.0015 3.2E-08 58.2 9.5 106 35-148 232-356 (445)
138 PRK07417 arogenate dehydrogena 97.3 0.0022 4.7E-08 53.1 9.7 99 36-150 1-103 (279)
139 TIGR00873 gnd 6-phosphoglucona 97.3 0.002 4.4E-08 57.6 10.0 114 37-159 1-119 (467)
140 cd01065 NAD_bind_Shikimate_DH 97.3 0.00092 2E-08 49.8 6.4 110 35-157 19-133 (155)
141 KOG4354 N-acetyl-gamma-glutamy 97.3 0.00086 1.9E-08 55.8 6.5 97 33-136 17-117 (340)
142 TIGR03026 NDP-sugDHase nucleot 97.3 0.0043 9.3E-08 54.1 11.3 68 36-114 1-84 (411)
143 PRK08223 hypothetical protein; 97.2 0.0043 9.4E-08 52.3 10.8 95 35-137 27-151 (287)
144 cd01487 E1_ThiF_like E1_ThiF_l 97.2 0.0024 5.2E-08 49.7 8.7 93 37-137 1-121 (174)
145 PRK12439 NAD(P)H-dependent gly 97.2 0.0021 4.6E-08 54.8 9.1 101 33-142 5-116 (341)
146 PRK06130 3-hydroxybutyryl-CoA 97.2 0.0026 5.6E-08 53.1 9.4 101 35-144 4-122 (311)
147 PF07755 DUF1611: Protein of u 97.2 0.00079 1.7E-08 57.1 6.1 82 67-157 1-88 (301)
148 TIGR00465 ilvC ketol-acid redu 97.2 0.0025 5.4E-08 54.2 9.1 94 36-145 4-101 (314)
149 PLN02858 fructose-bisphosphate 97.2 0.0035 7.6E-08 62.6 11.3 104 35-154 324-434 (1378)
150 PRK08507 prephenate dehydrogen 97.2 0.0075 1.6E-07 49.6 11.7 75 36-126 1-78 (275)
151 PF04321 RmlD_sub_bind: RmlD s 97.2 0.0015 3.2E-08 54.3 7.2 79 36-134 1-97 (286)
152 PF02670 DXP_reductoisom: 1-de 97.2 0.0031 6.7E-08 47.3 8.2 96 38-135 1-119 (129)
153 TIGR02355 moeB molybdopterin s 97.2 0.0044 9.6E-08 50.7 9.7 95 35-137 24-146 (240)
154 PRK06046 alanine dehydrogenase 97.1 0.00094 2E-08 56.7 5.9 91 35-137 129-224 (326)
155 PRK08605 D-lactate dehydrogena 97.1 0.0027 5.8E-08 54.2 8.6 103 36-156 147-254 (332)
156 TIGR02371 ala_DH_arch alanine 97.1 0.00073 1.6E-08 57.5 5.2 92 35-137 128-223 (325)
157 PRK12475 thiamine/molybdopteri 97.1 0.004 8.8E-08 53.4 9.7 94 36-137 25-148 (338)
158 PRK05479 ketol-acid reductoiso 97.1 0.0049 1.1E-07 52.9 10.2 94 36-145 18-115 (330)
159 PRK15057 UDP-glucose 6-dehydro 97.1 0.006 1.3E-07 53.3 10.8 30 36-69 1-30 (388)
160 PRK06545 prephenate dehydrogen 97.1 0.013 2.7E-07 50.4 12.3 102 37-151 2-108 (359)
161 PRK11908 NAD-dependent epimera 97.1 0.0031 6.8E-08 53.0 8.2 34 35-68 1-34 (347)
162 PLN03139 formate dehydrogenase 97.0 0.012 2.5E-07 51.6 11.8 106 36-157 200-310 (386)
163 PRK12480 D-lactate dehydrogena 97.0 0.0041 8.9E-08 53.1 8.9 60 36-114 147-206 (330)
164 PRK07531 bifunctional 3-hydrox 97.0 0.0036 7.8E-08 56.1 8.7 101 36-145 5-124 (495)
165 PLN02858 fructose-bisphosphate 97.0 0.011 2.4E-07 59.2 12.8 104 36-156 5-116 (1378)
166 COG1810 Uncharacterized protei 97.0 0.016 3.4E-07 47.1 11.5 107 35-159 1-109 (224)
167 COG1052 LdhA Lactate dehydroge 97.0 0.011 2.3E-07 50.7 11.1 129 11-157 117-255 (324)
168 PRK08289 glyceraldehyde-3-phos 97.0 0.0048 1E-07 55.2 9.0 35 33-68 125-163 (477)
169 TIGR01745 asd_gamma aspartate- 97.0 0.0056 1.2E-07 53.3 9.3 87 36-135 1-94 (366)
170 cd01492 Aos1_SUMO Ubiquitin ac 97.0 0.0018 3.8E-08 51.4 5.7 107 23-137 6-142 (197)
171 PF02737 3HCDH_N: 3-hydroxyacy 97.0 0.003 6.5E-08 49.3 6.9 99 37-145 1-122 (180)
172 cd01483 E1_enzyme_family Super 97.0 0.0087 1.9E-07 44.4 9.1 31 37-69 1-31 (143)
173 PRK07819 3-hydroxybutyryl-CoA 97.0 0.0087 1.9E-07 50.0 10.0 101 36-146 6-130 (286)
174 PRK08293 3-hydroxybutyryl-CoA 97.0 0.0048 1E-07 51.2 8.4 101 36-145 4-128 (287)
175 PRK08644 thiamine biosynthesis 97.0 0.0041 9E-08 49.9 7.7 95 35-137 28-150 (212)
176 cd05313 NAD_bind_2_Glu_DH NAD( 96.9 0.01 2.3E-07 49.2 10.2 106 35-148 38-166 (254)
177 PLN02427 UDP-apiose/xylose syn 96.9 0.0055 1.2E-07 52.4 8.9 38 31-68 10-47 (386)
178 COG4569 MhpF Acetaldehyde dehy 96.9 0.0049 1.1E-07 50.2 8.0 97 34-138 3-103 (310)
179 PRK07574 formate dehydrogenase 96.9 0.011 2.4E-07 51.8 10.8 106 36-157 193-303 (385)
180 TIGR03649 ergot_EASG ergot alk 96.9 0.0078 1.7E-07 49.0 9.2 94 37-135 1-101 (285)
181 TIGR00243 Dxr 1-deoxy-D-xylulo 96.9 0.01 2.3E-07 51.9 10.4 102 35-137 1-124 (389)
182 PRK05476 S-adenosyl-L-homocyst 96.9 0.0062 1.3E-07 54.0 9.1 102 35-152 212-314 (425)
183 PRK07688 thiamine/molybdopteri 96.9 0.0051 1.1E-07 52.8 8.3 94 36-137 25-148 (339)
184 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0052 1.1E-07 51.8 8.1 80 35-127 178-259 (311)
185 TIGR02356 adenyl_thiF thiazole 96.9 0.012 2.6E-07 46.7 9.7 102 28-137 11-143 (202)
186 PF01488 Shikimate_DH: Shikima 96.9 0.002 4.4E-08 47.9 5.0 72 35-115 12-84 (135)
187 PRK05808 3-hydroxybutyryl-CoA 96.9 0.008 1.7E-07 49.6 9.0 102 35-146 3-127 (282)
188 PLN00016 RNA-binding protein; 96.9 0.0073 1.6E-07 51.7 8.9 99 30-134 47-161 (378)
189 TIGR00936 ahcY adenosylhomocys 96.8 0.01 2.2E-07 52.3 9.8 104 34-154 194-299 (406)
190 PRK05690 molybdopterin biosynt 96.8 0.011 2.4E-07 48.3 9.5 95 35-137 32-154 (245)
191 PF00208 ELFV_dehydrog: Glutam 96.8 0.0077 1.7E-07 49.5 8.5 107 35-148 32-159 (244)
192 PRK07340 ornithine cyclodeamin 96.8 0.0024 5.1E-08 53.9 5.6 90 36-137 126-218 (304)
193 PRK11199 tyrA bifunctional cho 96.8 0.022 4.8E-07 49.4 11.7 66 34-126 97-162 (374)
194 PRK13243 glyoxylate reductase; 96.8 0.0085 1.8E-07 51.2 9.0 105 36-158 151-260 (333)
195 PRK06436 glycerate dehydrogena 96.8 0.01 2.2E-07 50.2 9.4 99 36-157 123-228 (303)
196 PRK08818 prephenate dehydrogen 96.8 0.033 7.2E-07 48.5 12.5 70 35-128 4-73 (370)
197 COG2085 Predicted dinucleotide 96.8 0.014 3.1E-07 47.2 9.3 86 35-135 1-91 (211)
198 KOG1502 Flavonol reductase/cin 96.8 0.014 3.1E-07 50.0 9.9 95 34-135 5-126 (327)
199 PRK07530 3-hydroxybutyryl-CoA 96.8 0.012 2.7E-07 48.7 9.3 99 36-144 5-126 (292)
200 TIGR01214 rmlD dTDP-4-dehydror 96.8 0.0095 2.1E-07 48.3 8.5 59 37-115 1-59 (287)
201 PRK08328 hypothetical protein; 96.7 0.02 4.3E-07 46.5 10.1 100 28-137 17-150 (231)
202 KOG0455 Homoserine dehydrogena 96.7 0.026 5.6E-07 47.4 10.8 116 35-153 3-138 (364)
203 PRK09260 3-hydroxybutyryl-CoA 96.7 0.0044 9.6E-08 51.4 6.4 102 36-146 2-126 (288)
204 PRK06035 3-hydroxyacyl-CoA deh 96.7 0.0065 1.4E-07 50.4 7.4 32 36-70 4-35 (291)
205 PRK07411 hypothetical protein; 96.7 0.014 2.9E-07 51.1 9.6 95 35-137 38-160 (390)
206 PRK14806 bifunctional cyclohex 96.7 0.033 7.1E-07 51.9 12.7 103 36-152 4-111 (735)
207 PRK11150 rfaD ADP-L-glycero-D- 96.7 0.011 2.3E-07 48.7 8.5 32 38-70 2-33 (308)
208 PLN02522 ATP citrate (pro-S)-l 96.7 0.01 2.2E-07 54.8 9.0 74 85-161 60-135 (608)
209 PRK15182 Vi polysaccharide bio 96.7 0.014 3E-07 51.6 9.5 33 33-69 4-36 (425)
210 PRK05597 molybdopterin biosynt 96.7 0.018 3.9E-07 49.7 10.0 93 36-136 29-149 (355)
211 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.0099 2.1E-07 47.2 7.8 32 36-70 29-60 (200)
212 PRK06522 2-dehydropantoate 2-r 96.7 0.022 4.9E-07 46.8 10.1 97 36-142 1-105 (304)
213 COG1091 RfbD dTDP-4-dehydrorha 96.6 0.0087 1.9E-07 50.4 7.5 78 36-134 1-96 (281)
214 PRK06141 ornithine cyclodeamin 96.6 0.0047 1E-07 52.3 5.8 90 36-135 126-217 (314)
215 COG1064 AdhP Zn-dependent alco 96.6 0.03 6.5E-07 48.3 10.7 91 36-138 168-261 (339)
216 COG1832 Predicted CoA-binding 96.6 0.029 6.2E-07 42.6 9.3 93 37-146 18-113 (140)
217 PLN02166 dTDP-glucose 4,6-dehy 96.6 0.016 3.5E-07 51.2 9.3 32 35-67 120-151 (436)
218 PRK09987 dTDP-4-dehydrorhamnos 96.6 0.017 3.7E-07 47.8 8.9 85 36-137 1-103 (299)
219 PTZ00353 glycosomal glyceralde 96.6 0.0033 7.2E-08 54.2 4.7 32 36-68 3-34 (342)
220 PF02826 2-Hacid_dh_C: D-isome 96.6 0.0052 1.1E-07 47.7 5.4 63 36-114 37-99 (178)
221 PLN02545 3-hydroxybutyryl-CoA 96.6 0.018 4E-07 47.7 9.0 102 36-147 5-129 (295)
222 PRK08762 molybdopterin biosynt 96.6 0.027 5.8E-07 48.8 10.3 93 36-136 136-256 (376)
223 PRK07878 molybdopterin biosynt 96.6 0.022 4.7E-07 49.7 9.8 95 35-137 42-164 (392)
224 TIGR02992 ectoine_eutC ectoine 96.5 0.0049 1.1E-07 52.4 5.5 91 35-136 129-224 (326)
225 PRK05600 thiamine biosynthesis 96.5 0.025 5.4E-07 49.1 9.9 102 28-137 31-163 (370)
226 PF07991 IlvN: Acetohydroxy ac 96.5 0.015 3.2E-07 45.4 7.5 84 36-135 5-93 (165)
227 PF03721 UDPG_MGDP_dh_N: UDP-g 96.5 0.011 2.5E-07 46.4 7.1 108 36-152 1-139 (185)
228 PRK08291 ectoine utilization p 96.5 0.0054 1.2E-07 52.2 5.6 88 36-134 133-224 (330)
229 PRK06444 prephenate dehydrogen 96.5 0.0085 1.8E-07 47.8 6.2 28 36-64 1-28 (197)
230 PRK08125 bifunctional UDP-gluc 96.5 0.019 4.1E-07 53.0 9.4 35 34-68 314-348 (660)
231 PF00899 ThiF: ThiF family; I 96.5 0.015 3.2E-07 42.9 7.1 32 36-69 3-34 (135)
232 cd01491 Ube1_repeat1 Ubiquitin 96.4 0.018 3.8E-07 48.6 8.2 108 23-138 4-138 (286)
233 cd00757 ThiF_MoeB_HesA_family 96.4 0.019 4.2E-07 46.2 8.1 101 28-136 11-142 (228)
234 PRK15469 ghrA bifunctional gly 96.4 0.026 5.6E-07 47.9 9.2 62 36-114 137-198 (312)
235 PRK13403 ketol-acid reductoiso 96.4 0.025 5.4E-07 48.7 9.0 65 36-117 17-81 (335)
236 PLN02695 GDP-D-mannose-3',5'-e 96.4 0.03 6.4E-07 48.0 9.6 35 33-68 19-53 (370)
237 PLN02353 probable UDP-glucose 96.4 0.047 1E-06 49.0 11.1 108 35-150 1-143 (473)
238 PLN02206 UDP-glucuronate decar 96.4 0.028 6E-07 49.8 9.5 90 36-136 120-231 (442)
239 PTZ00082 L-lactate dehydrogena 96.4 0.09 2E-06 44.8 12.3 34 34-70 5-39 (321)
240 PRK08229 2-dehydropantoate 2-r 96.3 0.04 8.6E-07 46.4 9.9 106 35-153 2-121 (341)
241 PRK07066 3-hydroxybutyryl-CoA 96.3 0.03 6.5E-07 47.9 9.0 32 35-69 7-38 (321)
242 PRK06129 3-hydroxyacyl-CoA deh 96.3 0.032 6.9E-07 46.8 9.1 72 35-115 2-91 (308)
243 COG0300 DltE Short-chain dehyd 96.3 0.048 1E-06 45.5 10.0 88 31-138 2-92 (265)
244 PRK12921 2-dehydropantoate 2-r 96.3 0.047 1E-06 45.0 10.0 97 36-141 1-106 (305)
245 TIGR01327 PGDH D-3-phosphoglyc 96.3 0.024 5.2E-07 51.3 8.8 105 36-157 139-248 (525)
246 PLN02778 3,5-epimerase/4-reduc 96.3 0.048 1E-06 45.4 10.0 31 33-64 7-37 (298)
247 cd01489 Uba2_SUMO Ubiquitin ac 96.3 0.045 9.7E-07 46.7 9.9 96 37-140 1-126 (312)
248 COG2099 CobK Precorrin-6x redu 96.3 0.077 1.7E-06 44.1 10.9 109 35-155 2-127 (257)
249 PRK06249 2-dehydropantoate 2-r 96.3 0.073 1.6E-06 44.7 11.0 114 34-158 4-125 (313)
250 PRK11064 wecC UDP-N-acetyl-D-m 96.3 0.056 1.2E-06 47.5 10.7 32 35-69 3-34 (415)
251 COG0287 TyrA Prephenate dehydr 96.3 0.069 1.5E-06 44.8 10.7 106 35-152 3-112 (279)
252 PLN02477 glutamate dehydrogena 96.2 0.043 9.3E-07 48.5 9.9 110 35-159 206-330 (410)
253 cd01485 E1-1_like Ubiquitin ac 96.2 0.031 6.7E-07 44.3 8.2 46 23-70 4-52 (198)
254 PLN02657 3,8-divinyl protochlo 96.2 0.037 8E-07 48.0 9.2 34 35-69 60-93 (390)
255 cd01490 Ube1_repeat2 Ubiquitin 96.2 0.044 9.5E-07 48.8 9.8 92 37-136 1-129 (435)
256 TIGR03570 NeuD_NnaD sugar O-ac 96.2 0.091 2E-06 40.1 10.4 85 37-133 1-86 (201)
257 PLN02494 adenosylhomocysteinas 96.2 0.031 6.8E-07 50.2 8.7 109 26-151 245-355 (477)
258 PTZ00117 malate dehydrogenase; 96.2 0.17 3.8E-06 42.9 12.9 35 34-70 4-38 (319)
259 PTZ00079 NADP-specific glutama 96.2 0.072 1.6E-06 47.7 10.8 112 36-159 238-372 (454)
260 cd01484 E1-2_like Ubiquitin ac 96.1 0.064 1.4E-06 43.9 9.8 93 37-137 1-123 (234)
261 PRK14851 hypothetical protein; 96.1 0.049 1.1E-06 51.0 10.1 102 28-137 33-167 (679)
262 TIGR03466 HpnA hopanoid-associ 96.1 0.029 6.3E-07 45.9 7.8 33 36-69 1-33 (328)
263 COG0334 GdhA Glutamate dehydro 96.1 0.047 1E-06 48.2 9.4 111 34-159 206-331 (411)
264 KOG2742 Predicted oxidoreducta 96.1 0.0045 9.7E-08 53.4 2.9 109 35-155 3-112 (367)
265 COG1260 INO1 Myo-inositol-1-ph 96.1 0.046 9.9E-07 47.3 9.0 127 33-161 3-189 (362)
266 PRK08268 3-hydroxy-acyl-CoA de 96.1 0.045 9.8E-07 49.4 9.3 32 36-70 8-39 (507)
267 PRK05086 malate dehydrogenase; 96.1 0.087 1.9E-06 44.6 10.6 71 36-114 1-77 (312)
268 PTZ00325 malate dehydrogenase; 96.1 0.11 2.5E-06 44.3 11.3 40 30-69 3-42 (321)
269 PRK14852 hypothetical protein; 96.0 0.052 1.1E-06 52.6 9.9 106 25-138 319-457 (989)
270 cd01336 MDH_cytoplasmic_cytoso 96.0 0.038 8.2E-07 47.2 8.2 73 34-114 1-86 (325)
271 TIGR02354 thiF_fam2 thiamine b 96.0 0.054 1.2E-06 43.1 8.5 34 35-70 21-54 (200)
272 PRK01710 murD UDP-N-acetylmura 96.0 0.058 1.3E-06 47.7 9.5 87 36-135 15-106 (458)
273 COG0111 SerA Phosphoglycerate 96.0 0.066 1.4E-06 45.8 9.5 63 36-114 143-205 (324)
274 PRK06901 aspartate-semialdehyd 96.0 0.018 3.9E-07 49.3 5.9 86 35-135 3-93 (322)
275 PRK10217 dTDP-glucose 4,6-dehy 95.9 0.025 5.4E-07 47.5 6.7 34 35-69 1-34 (355)
276 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.9 0.043 9.3E-07 49.5 8.6 32 36-70 6-37 (503)
277 KOG0069 Glyoxylate/hydroxypyru 95.9 0.11 2.4E-06 44.8 10.7 110 36-161 163-276 (336)
278 PTZ00075 Adenosylhomocysteinas 95.9 0.061 1.3E-06 48.4 9.4 84 35-134 254-338 (476)
279 PRK15409 bifunctional glyoxyla 95.9 0.12 2.7E-06 44.0 10.9 63 36-114 146-208 (323)
280 COG1086 Predicted nucleoside-d 95.9 0.041 8.9E-07 50.4 8.3 89 35-135 116-209 (588)
281 PRK06091 membrane protein FdrA 95.9 0.044 9.6E-07 50.1 8.5 72 87-161 101-172 (555)
282 TIGR02197 heptose_epim ADP-L-g 95.9 0.071 1.5E-06 43.5 9.0 30 38-69 1-31 (314)
283 PRK12464 1-deoxy-D-xylulose 5- 95.9 0.067 1.4E-06 46.9 9.1 115 40-155 1-135 (383)
284 PRK07877 hypothetical protein; 95.9 0.055 1.2E-06 51.0 9.2 102 28-138 97-229 (722)
285 PF01073 3Beta_HSD: 3-beta hyd 95.8 0.079 1.7E-06 44.0 9.3 93 39-137 1-114 (280)
286 cd00755 YgdL_like Family of ac 95.8 0.088 1.9E-06 42.9 9.3 95 35-136 11-133 (231)
287 PRK13581 D-3-phosphoglycerate 95.8 0.068 1.5E-06 48.4 9.4 104 36-157 141-249 (526)
288 PRK06407 ornithine cyclodeamin 95.8 0.033 7.2E-07 47.0 6.7 92 35-137 117-213 (301)
289 PRK15181 Vi polysaccharide bio 95.8 0.091 2E-06 44.4 9.4 34 34-68 14-47 (348)
290 COG0373 HemA Glutamyl-tRNA red 95.7 0.043 9.4E-07 48.5 7.6 84 36-132 179-267 (414)
291 PLN02214 cinnamoyl-CoA reducta 95.7 0.12 2.6E-06 43.7 10.1 35 34-69 9-43 (342)
292 COG1087 GalE UDP-glucose 4-epi 95.7 0.043 9.3E-07 46.9 7.2 92 36-134 1-113 (329)
293 PF00056 Ldh_1_N: lactate/mala 95.7 0.015 3.3E-07 43.7 4.1 72 36-114 1-77 (141)
294 COG0569 TrkA K+ transport syst 95.7 0.2 4.4E-06 40.4 10.9 94 36-138 1-100 (225)
295 PRK02472 murD UDP-N-acetylmura 95.7 0.12 2.7E-06 45.0 10.3 87 37-135 7-97 (447)
296 cd00401 AdoHcyase S-adenosyl-L 95.7 0.061 1.3E-06 47.6 8.3 87 35-137 202-290 (413)
297 PRK08306 dipicolinate synthase 95.7 0.034 7.4E-07 46.7 6.4 84 35-133 152-237 (296)
298 TIGR01179 galE UDP-glucose-4-e 95.6 0.096 2.1E-06 42.6 8.9 29 37-66 1-29 (328)
299 PLN00112 malate dehydrogenase 95.6 0.1 2.2E-06 46.6 9.6 34 25-58 81-123 (444)
300 TIGR01181 dTDP_gluc_dehyt dTDP 95.6 0.11 2.3E-06 42.2 9.1 30 37-66 1-31 (317)
301 PRK14030 glutamate dehydrogena 95.6 0.13 2.8E-06 46.0 10.2 112 36-159 229-363 (445)
302 PRK06487 glycerate dehydrogena 95.6 0.14 3E-06 43.4 10.1 57 36-114 149-205 (317)
303 PRK14031 glutamate dehydrogena 95.6 0.14 3E-06 45.8 10.3 105 36-148 229-355 (444)
304 PRK15438 erythronate-4-phospha 95.6 0.046 9.9E-07 47.8 7.1 59 36-114 117-175 (378)
305 PRK06182 short chain dehydroge 95.6 0.23 5.1E-06 40.0 10.9 32 36-68 4-35 (273)
306 PRK10675 UDP-galactose-4-epime 95.6 0.1 2.2E-06 43.3 8.9 31 36-67 1-31 (338)
307 PRK10124 putative UDP-glucose 95.6 0.12 2.6E-06 46.1 9.8 83 36-135 144-235 (463)
308 PRK14106 murD UDP-N-acetylmura 95.5 0.12 2.6E-06 45.2 9.6 85 36-134 6-96 (450)
309 TIGR03025 EPS_sugtrans exopoly 95.5 0.13 2.8E-06 45.2 9.9 89 36-135 126-220 (445)
310 PRK00257 erythronate-4-phospha 95.5 0.09 2E-06 46.0 8.8 59 36-114 117-175 (381)
311 TIGR03023 WcaJ_sugtrans Undeca 95.5 0.15 3.2E-06 44.9 10.3 88 35-135 128-223 (451)
312 COG1179 Dinucleotide-utilizing 95.5 0.07 1.5E-06 44.3 7.5 93 36-135 31-151 (263)
313 KOG2380 Prephenate dehydrogena 95.5 0.044 9.5E-07 47.8 6.5 73 35-122 52-124 (480)
314 PRK05693 short chain dehydroge 95.5 0.16 3.5E-06 40.9 9.6 31 36-67 2-32 (274)
315 TIGR01035 hemA glutamyl-tRNA r 95.4 0.067 1.4E-06 47.0 7.7 80 36-128 181-265 (417)
316 PRK06199 ornithine cyclodeamin 95.4 0.04 8.7E-07 48.1 6.2 97 36-141 156-264 (379)
317 PLN02650 dihydroflavonol-4-red 95.4 0.07 1.5E-06 44.9 7.5 34 34-68 4-37 (351)
318 PLN02662 cinnamyl-alcohol dehy 95.4 0.07 1.5E-06 43.9 7.2 33 36-69 5-37 (322)
319 KOG2733 Uncharacterized membra 95.3 0.036 7.7E-07 48.4 5.5 116 35-159 5-140 (423)
320 PRK11790 D-3-phosphoglycerate 95.3 0.23 5.1E-06 43.6 10.8 60 36-114 152-211 (409)
321 PLN00198 anthocyanidin reducta 95.3 0.084 1.8E-06 44.1 7.6 37 31-68 5-41 (338)
322 PRK06823 ornithine cyclodeamin 95.3 0.033 7.1E-07 47.4 5.1 93 35-137 128-223 (315)
323 cd01486 Apg7 Apg7 is an E1-lik 95.3 0.17 3.8E-06 43.1 9.3 31 37-69 1-31 (307)
324 TIGR01777 yfcH conserved hypot 95.3 0.15 3.2E-06 41.0 8.7 31 38-69 1-31 (292)
325 PRK01438 murD UDP-N-acetylmura 95.2 0.13 2.9E-06 45.4 9.0 87 36-133 17-105 (480)
326 PRK14982 acyl-ACP reductase; P 95.2 0.044 9.5E-07 47.3 5.7 33 36-69 156-189 (340)
327 PRK04663 murD UDP-N-acetylmura 95.2 0.33 7.2E-06 42.6 11.3 86 35-135 7-97 (438)
328 KOG1198 Zinc-binding oxidoredu 95.2 0.09 1.9E-06 45.4 7.5 98 35-138 158-257 (347)
329 PLN02986 cinnamyl-alcohol dehy 95.2 0.11 2.3E-06 43.1 7.7 33 36-69 6-38 (322)
330 PRK15116 sulfur acceptor prote 95.1 0.21 4.5E-06 41.7 9.4 94 36-136 31-152 (268)
331 TIGR01087 murD UDP-N-acetylmur 95.1 0.24 5.2E-06 43.1 10.2 85 37-135 1-91 (433)
332 TIGR01759 MalateDH-SF1 malate 95.1 0.11 2.4E-06 44.4 7.8 35 34-69 2-42 (323)
333 PLN02896 cinnamyl-alcohol dehy 95.1 0.046 1E-06 46.1 5.5 32 36-68 11-42 (353)
334 PRK06932 glycerate dehydrogena 95.1 0.26 5.6E-06 41.8 9.9 58 36-114 148-205 (314)
335 PRK12320 hypothetical protein; 95.1 0.14 3.1E-06 48.1 9.0 88 36-135 1-99 (699)
336 PRK10084 dTDP-glucose 4,6 dehy 95.1 0.059 1.3E-06 45.1 6.0 32 36-68 1-32 (352)
337 PF10087 DUF2325: Uncharacteri 95.0 0.45 9.7E-06 33.2 9.6 92 37-151 1-96 (97)
338 PLN02260 probable rhamnose bio 95.0 0.16 3.4E-06 46.9 9.1 28 35-63 380-407 (668)
339 PLN02306 hydroxypyruvate reduc 95.0 0.4 8.6E-06 42.0 11.2 71 36-114 166-244 (386)
340 PF01370 Epimerase: NAD depend 95.0 0.031 6.6E-07 43.5 3.9 73 38-115 1-74 (236)
341 PRK00045 hemA glutamyl-tRNA re 95.0 0.096 2.1E-06 46.1 7.4 79 36-127 183-266 (423)
342 COG0743 Dxr 1-deoxy-D-xylulose 95.0 0.24 5.2E-06 43.3 9.5 98 35-137 1-120 (385)
343 PRK08340 glucose-1-dehydrogena 95.0 0.17 3.6E-06 40.5 8.2 30 36-66 1-30 (259)
344 PLN02725 GDP-4-keto-6-deoxyman 95.0 0.092 2E-06 42.7 6.7 56 40-114 2-57 (306)
345 PRK05865 hypothetical protein; 95.0 0.13 2.7E-06 49.5 8.5 32 36-68 1-32 (854)
346 TIGR02853 spore_dpaA dipicolin 95.0 0.05 1.1E-06 45.6 5.2 67 36-118 152-220 (287)
347 PRK08410 2-hydroxyacid dehydro 94.9 0.29 6.3E-06 41.4 9.9 59 36-114 146-204 (311)
348 TIGR01381 E1_like_apg7 E1-like 94.9 0.16 3.5E-06 47.4 8.8 98 35-140 338-483 (664)
349 PLN00203 glutamyl-tRNA reducta 94.9 0.088 1.9E-06 47.8 7.0 83 35-127 266-353 (519)
350 COG1004 Ugd Predicted UDP-gluc 94.9 0.47 1E-05 42.0 11.2 70 36-114 1-84 (414)
351 PRK13940 glutamyl-tRNA reducta 94.9 0.054 1.2E-06 47.8 5.5 70 36-115 182-251 (414)
352 cd01338 MDH_choloroplast_like 94.8 0.14 3.1E-06 43.6 7.8 36 34-69 1-41 (322)
353 KOG1494 NAD-dependent malate d 94.8 0.065 1.4E-06 45.5 5.5 76 31-113 24-103 (345)
354 PLN02989 cinnamyl-alcohol dehy 94.8 0.17 3.7E-06 41.9 8.1 32 36-68 6-37 (325)
355 PLN00106 malate dehydrogenase 94.8 0.23 5E-06 42.5 9.0 45 26-70 9-53 (323)
356 PRK03803 murD UDP-N-acetylmura 94.8 0.36 7.8E-06 42.3 10.5 86 36-135 7-97 (448)
357 PRK08177 short chain dehydroge 94.8 0.23 4.9E-06 38.9 8.4 32 36-68 2-33 (225)
358 KOG1014 17 beta-hydroxysteroid 94.8 0.071 1.5E-06 45.5 5.7 80 38-139 52-135 (312)
359 PRK05993 short chain dehydroge 94.8 0.28 6.1E-06 39.8 9.2 32 36-68 5-36 (277)
360 PRK05884 short chain dehydroge 94.8 0.34 7.4E-06 38.2 9.4 32 36-68 1-32 (223)
361 TIGR02440 FadJ fatty oxidation 94.8 0.25 5.4E-06 46.3 9.8 34 34-69 303-336 (699)
362 PLN02260 probable rhamnose bio 94.7 0.26 5.6E-06 45.4 9.8 34 34-67 5-39 (668)
363 PLN02240 UDP-glucose 4-epimera 94.7 0.31 6.7E-06 40.6 9.4 31 36-67 6-36 (352)
364 KOG2017 Molybdopterin synthase 94.7 0.073 1.6E-06 46.4 5.6 96 35-138 66-189 (427)
365 KOG1203 Predicted dehydrogenas 94.7 0.17 3.7E-06 44.8 7.9 35 34-69 78-112 (411)
366 KOG2018 Predicted dinucleotide 94.6 0.15 3.1E-06 44.1 7.1 93 37-137 76-197 (430)
367 COG0604 Qor NADPH:quinone redu 94.6 0.2 4.4E-06 42.6 8.1 99 36-139 144-244 (326)
368 PRK00421 murC UDP-N-acetylmura 94.6 0.34 7.5E-06 42.7 9.8 84 36-135 8-95 (461)
369 PRK00141 murD UDP-N-acetylmura 94.5 0.21 4.6E-06 44.4 8.4 85 34-134 14-102 (473)
370 TIGR03022 WbaP_sugtrans Undeca 94.5 0.37 8.1E-06 42.4 9.9 87 35-134 125-220 (456)
371 TIGR01472 gmd GDP-mannose 4,6- 94.5 0.092 2E-06 44.0 5.8 32 37-69 2-33 (343)
372 PLN02653 GDP-mannose 4,6-dehyd 94.5 0.11 2.4E-06 43.4 6.2 34 35-69 6-39 (340)
373 TIGR01763 MalateDH_bact malate 94.5 1.2 2.6E-05 37.6 12.5 32 36-69 2-33 (305)
374 PRK06988 putative formyltransf 94.5 0.11 2.3E-06 44.2 6.1 71 35-114 2-85 (312)
375 TIGR02622 CDP_4_6_dhtase CDP-g 94.5 0.12 2.6E-06 43.5 6.4 32 36-68 5-36 (349)
376 PRK11154 fadJ multifunctional 94.4 0.3 6.4E-06 45.9 9.5 35 33-69 307-341 (708)
377 cd01488 Uba3_RUB Ubiquitin act 94.4 0.21 4.5E-06 42.2 7.8 31 37-69 1-31 (291)
378 PLN03209 translocon at the inn 94.4 0.13 2.8E-06 47.4 6.9 32 37-69 82-113 (576)
379 PRK10538 malonic semialdehyde 94.4 0.42 9E-06 37.9 9.2 31 36-67 1-31 (248)
380 PLN02928 oxidoreductase family 94.4 0.14 3E-06 44.1 6.8 67 36-114 160-234 (347)
381 PLN00141 Tic62-NAD(P)-related 94.4 0.083 1.8E-06 42.4 5.1 34 35-69 17-50 (251)
382 COG0451 WcaG Nucleoside-diphos 94.4 0.37 8.1E-06 39.0 8.9 32 37-69 2-33 (314)
383 COG1893 ApbA Ketopantoate redu 94.3 0.43 9.3E-06 40.4 9.4 111 36-158 1-120 (307)
384 PRK06718 precorrin-2 dehydroge 94.3 0.51 1.1E-05 37.5 9.4 87 36-134 11-98 (202)
385 cd05311 NAD_bind_2_malic_enz N 94.3 0.4 8.7E-06 38.8 8.8 72 36-118 26-109 (226)
386 PRK11730 fadB multifunctional 94.3 0.38 8.2E-06 45.3 9.8 32 35-69 313-344 (715)
387 COG2423 Predicted ornithine cy 94.3 0.14 3E-06 44.1 6.4 91 36-136 131-225 (330)
388 PRK00683 murD UDP-N-acetylmura 94.2 0.56 1.2E-05 40.9 10.3 85 36-135 4-88 (418)
389 COG1063 Tdh Threonine dehydrog 94.2 0.24 5.2E-06 42.3 7.8 99 37-141 171-274 (350)
390 PRK06180 short chain dehydroge 94.2 0.28 6.1E-06 39.7 7.9 32 36-68 5-36 (277)
391 PRK08057 cobalt-precorrin-6x r 94.2 0.4 8.6E-06 39.6 8.7 85 35-134 2-96 (248)
392 cd05291 HicDH_like L-2-hydroxy 94.2 0.11 2.4E-06 43.7 5.5 32 37-69 2-33 (306)
393 PRK04308 murD UDP-N-acetylmura 94.2 0.73 1.6E-05 40.4 10.9 88 36-135 6-96 (445)
394 PRK09009 C factor cell-cell si 94.1 0.14 3.1E-06 40.1 5.9 31 36-66 1-32 (235)
395 PRK07904 short chain dehydroge 94.1 0.57 1.2E-05 37.7 9.5 33 36-68 9-41 (253)
396 PRK05442 malate dehydrogenase; 94.1 0.19 4.1E-06 43.0 6.9 73 34-114 3-88 (326)
397 PF02844 GARS_N: Phosphoribosy 94.1 0.33 7.1E-06 34.9 7.1 87 36-133 1-89 (100)
398 KOG2711 Glycerol-3-phosphate d 94.1 0.33 7.2E-06 42.1 8.3 101 33-141 19-143 (372)
399 PRK01368 murD UDP-N-acetylmura 94.1 0.64 1.4E-05 41.3 10.4 84 36-135 7-92 (454)
400 cd05293 LDH_1 A subgroup of L- 94.0 0.32 6.8E-06 41.3 8.1 71 36-114 4-79 (312)
401 TIGR01757 Malate-DH_plant mala 94.0 0.22 4.7E-06 43.8 7.2 28 34-61 43-70 (387)
402 COG0059 IlvC Ketol-acid reduct 94.0 0.28 6E-06 42.1 7.6 82 36-133 19-105 (338)
403 PF00670 AdoHcyase_NAD: S-aden 94.0 0.12 2.5E-06 40.3 5.0 97 36-151 24-124 (162)
404 PRK09880 L-idonate 5-dehydroge 94.0 0.55 1.2E-05 39.3 9.5 94 37-138 172-268 (343)
405 TIGR03366 HpnZ_proposed putati 94.0 0.4 8.6E-06 39.1 8.4 96 37-137 123-219 (280)
406 PRK03369 murD UDP-N-acetylmura 94.0 0.34 7.4E-06 43.3 8.6 83 36-134 13-98 (488)
407 COG0702 Predicted nucleoside-d 94.0 0.094 2E-06 41.7 4.6 34 36-70 1-34 (275)
408 PRK15204 undecaprenyl-phosphat 94.0 0.75 1.6E-05 41.2 10.7 86 36-132 147-236 (476)
409 PRK07231 fabG 3-ketoacyl-(acyl 94.0 0.078 1.7E-06 41.7 4.0 32 36-68 6-37 (251)
410 PRK07825 short chain dehydroge 93.9 0.71 1.5E-05 37.1 9.7 30 36-66 6-35 (273)
411 PRK08267 short chain dehydroge 93.9 0.37 8E-06 38.4 7.9 31 36-67 2-32 (260)
412 PLN02686 cinnamoyl-CoA reducta 93.9 0.099 2.1E-06 44.8 4.9 37 32-69 50-86 (367)
413 PRK07454 short chain dehydroge 93.9 0.68 1.5E-05 36.3 9.3 33 34-67 5-37 (241)
414 PRK05225 ketol-acid reductoiso 93.9 0.16 3.4E-06 45.8 6.1 68 35-118 36-108 (487)
415 TIGR03589 PseB UDP-N-acetylglu 93.8 0.4 8.8E-06 40.1 8.3 31 36-66 5-36 (324)
416 PRK07578 short chain dehydroge 93.8 0.21 4.6E-06 38.3 6.2 30 36-67 1-30 (199)
417 TIGR01082 murC UDP-N-acetylmur 93.8 0.58 1.3E-05 41.1 9.6 83 37-135 1-87 (448)
418 PRK01390 murD UDP-N-acetylmura 93.8 0.62 1.3E-05 41.0 9.8 31 36-69 10-40 (460)
419 cd05297 GH4_alpha_glucosidase_ 93.8 0.2 4.3E-06 44.2 6.6 89 36-132 1-103 (423)
420 PRK02705 murD UDP-N-acetylmura 93.8 0.62 1.3E-05 40.8 9.7 84 37-134 2-96 (459)
421 cd00650 LDH_MDH_like NAD-depen 93.7 1.8 4E-05 35.3 11.9 69 38-112 1-76 (263)
422 cd00704 MDH Malate dehydrogena 93.7 0.36 7.9E-06 41.2 7.9 72 36-114 1-84 (323)
423 PRK06153 hypothetical protein; 93.7 0.34 7.3E-06 42.7 7.8 32 36-69 177-208 (393)
424 COG2403 Predicted GTPase [Gene 93.7 0.36 7.7E-06 42.6 7.8 96 34-133 5-112 (449)
425 TIGR02437 FadB fatty oxidation 93.6 0.6 1.3E-05 44.0 9.9 34 33-69 311-344 (714)
426 KOG0172 Lysine-ketoglutarate r 93.6 0.22 4.8E-06 44.0 6.5 113 36-160 3-120 (445)
427 PLN02572 UDP-sulfoquinovose sy 93.6 0.11 2.4E-06 45.8 4.8 31 35-66 47-77 (442)
428 PRK00066 ldh L-lactate dehydro 93.6 1.7 3.6E-05 36.9 11.7 34 35-69 6-39 (315)
429 TIGR01202 bchC 2-desacetyl-2-h 93.6 0.33 7.2E-06 40.2 7.4 86 37-138 147-233 (308)
430 cd01337 MDH_glyoxysomal_mitoch 93.6 0.45 9.8E-06 40.5 8.3 35 36-70 1-35 (310)
431 PRK03659 glutathione-regulated 93.6 0.34 7.3E-06 44.6 8.0 105 35-151 400-510 (601)
432 PRK06179 short chain dehydroge 93.5 0.16 3.4E-06 40.8 5.2 32 36-68 5-36 (270)
433 PRK12938 acetyacetyl-CoA reduc 93.5 0.85 1.8E-05 35.8 9.3 31 37-68 5-35 (246)
434 PF02571 CbiJ: Precorrin-6x re 93.5 0.41 8.8E-06 39.5 7.6 87 36-134 1-97 (249)
435 PRK12549 shikimate 5-dehydroge 93.5 0.17 3.8E-06 42.2 5.5 33 36-70 128-160 (284)
436 PRK06953 short chain dehydroge 93.5 0.58 1.3E-05 36.5 8.3 31 36-67 2-32 (222)
437 PRK08017 oxidoreductase; Provi 93.5 1.9 4E-05 34.0 11.2 31 37-68 4-34 (256)
438 cd08295 double_bond_reductase_ 93.5 0.33 7.1E-06 40.4 7.2 97 36-137 153-252 (338)
439 PRK05872 short chain dehydroge 93.5 1.2 2.7E-05 36.5 10.5 31 36-67 10-40 (296)
440 KOG4777 Aspartate-semialdehyde 93.5 0.19 4.2E-06 42.3 5.6 96 37-135 5-106 (361)
441 PRK07023 short chain dehydroge 93.4 0.14 3E-06 40.4 4.7 33 35-68 1-33 (243)
442 COG2130 Putative NADP-dependen 93.4 0.28 6E-06 42.1 6.5 77 37-140 153-229 (340)
443 TIGR02441 fa_ox_alpha_mit fatt 93.4 0.44 9.5E-06 45.1 8.6 35 32-69 332-366 (737)
444 PRK00005 fmt methionyl-tRNA fo 93.4 0.24 5.2E-06 41.8 6.2 70 36-114 1-86 (309)
445 TIGR01408 Ube1 ubiquitin-activ 93.4 0.65 1.4E-05 45.5 9.8 109 20-136 401-549 (1008)
446 cd01493 APPBP1_RUB Ubiquitin a 93.3 0.99 2.2E-05 40.1 10.3 42 26-69 8-52 (425)
447 PF02593 dTMP_synthase: Thymid 93.3 1.2 2.6E-05 36.2 9.9 95 44-156 5-103 (217)
448 TIGR00877 purD phosphoribosyla 93.3 1.1 2.4E-05 38.8 10.4 90 36-134 1-92 (423)
449 COG0039 Mdh Malate/lactate deh 93.2 2.6 5.6E-05 36.1 12.3 34 36-70 1-34 (313)
450 PRK06196 oxidoreductase; Provi 93.2 0.59 1.3E-05 38.8 8.3 32 36-68 27-58 (315)
451 PRK03562 glutathione-regulated 93.2 0.77 1.7E-05 42.5 9.7 104 35-151 400-510 (621)
452 TIGR01408 Ube1 ubiquitin-activ 93.2 0.61 1.3E-05 45.7 9.3 107 23-137 9-144 (1008)
453 cd01078 NAD_bind_H4MPT_DH NADP 93.1 0.22 4.7E-06 38.7 5.2 32 36-69 29-60 (194)
454 COG3268 Uncharacterized conser 93.1 0.23 5E-06 43.1 5.7 115 34-158 5-127 (382)
455 cd08293 PTGR2 Prostaglandin re 93.1 0.41 9E-06 39.7 7.2 95 36-136 156-254 (345)
456 PRK00885 phosphoribosylamine-- 93.1 1.4 3.1E-05 38.3 10.8 89 36-134 1-90 (420)
457 PRK06719 precorrin-2 dehydroge 93.1 1.2 2.7E-05 33.9 9.3 80 36-130 14-94 (157)
458 PRK12829 short chain dehydroge 93.0 0.82 1.8E-05 36.2 8.6 32 36-68 12-43 (264)
459 PRK07589 ornithine cyclodeamin 93.0 0.29 6.3E-06 42.3 6.3 94 36-137 130-226 (346)
460 PRK09186 flagellin modificatio 93.0 0.83 1.8E-05 36.0 8.5 31 36-67 5-35 (256)
461 PRK06463 fabG 3-ketoacyl-(acyl 93.0 2 4.3E-05 34.1 10.7 32 36-68 8-39 (255)
462 PRK06057 short chain dehydroge 93.0 1.1 2.3E-05 35.7 9.1 31 36-67 8-38 (255)
463 PRK12742 oxidoreductase; Provi 92.9 0.75 1.6E-05 35.9 8.1 32 36-68 7-38 (237)
464 PF02423 OCD_Mu_crystall: Orni 92.8 0.21 4.7E-06 42.2 5.1 94 36-137 129-225 (313)
465 COG0771 MurD UDP-N-acetylmuram 92.8 0.99 2.1E-05 40.5 9.5 87 35-134 7-97 (448)
466 cd05294 LDH-like_MDH_nadp A la 92.8 0.5 1.1E-05 39.9 7.3 33 36-69 1-34 (309)
467 PF02254 TrkA_N: TrkA-N domain 92.8 0.75 1.6E-05 32.3 7.2 101 38-151 1-108 (116)
468 KOG0068 D-3-phosphoglycerate d 92.7 0.96 2.1E-05 39.5 8.9 104 15-138 125-237 (406)
469 PF02558 ApbA: Ketopantoate re 92.7 0.66 1.4E-05 34.2 7.1 109 38-157 1-119 (151)
470 PRK08278 short chain dehydroge 92.7 1.4 3.1E-05 35.6 9.7 32 36-68 7-38 (273)
471 PF11017 DUF2855: Protein of u 92.7 0.98 2.1E-05 38.7 8.9 97 36-141 137-236 (314)
472 PLN02740 Alcohol dehydrogenase 92.7 0.68 1.5E-05 39.6 8.1 94 37-138 201-302 (381)
473 TIGR03013 EpsB_2 sugar transfe 92.7 0.74 1.6E-05 40.6 8.5 85 36-135 125-218 (442)
474 cd08237 ribitol-5-phosphate_DH 92.6 0.55 1.2E-05 39.5 7.3 87 37-137 166-257 (341)
475 PRK14573 bifunctional D-alanyl 92.5 1.1 2.4E-05 42.5 10.0 83 36-134 5-91 (809)
476 PRK08416 7-alpha-hydroxysteroi 92.5 0.74 1.6E-05 36.8 7.7 32 37-69 10-41 (260)
477 PRK03806 murD UDP-N-acetylmura 92.5 1.5 3.3E-05 38.2 10.2 84 36-135 7-94 (438)
478 PRK00676 hemA glutamyl-tRNA re 92.5 0.81 1.8E-05 39.5 8.2 35 35-71 174-208 (338)
479 PRK07577 short chain dehydroge 92.5 0.27 6E-06 38.3 5.0 32 36-68 4-35 (234)
480 PRK06138 short chain dehydroge 92.5 0.59 1.3E-05 36.7 7.0 32 36-68 6-37 (252)
481 COG0677 WecC UDP-N-acetyl-D-ma 92.4 0.81 1.8E-05 40.6 8.2 106 35-150 9-144 (436)
482 PRK04690 murD UDP-N-acetylmura 92.4 1.7 3.6E-05 38.7 10.5 85 36-135 9-98 (468)
483 PF13607 Succ_CoA_lig: Succiny 92.4 1.3 2.7E-05 33.4 8.3 104 37-159 3-124 (138)
484 cd08230 glucose_DH Glucose deh 92.4 0.81 1.7E-05 38.5 8.1 93 36-138 174-271 (355)
485 COG1090 Predicted nucleoside-d 92.4 0.36 7.7E-06 40.9 5.7 64 38-114 1-64 (297)
486 PRK07063 short chain dehydroge 92.3 1.9 4.1E-05 34.3 9.7 31 36-67 8-38 (260)
487 COG0362 Gnd 6-phosphogluconate 92.3 1.6 3.4E-05 38.9 9.8 32 36-70 4-35 (473)
488 cd05292 LDH_2 A subgroup of L- 92.2 0.66 1.4E-05 39.1 7.3 34 36-70 1-34 (308)
489 PRK06523 short chain dehydroge 92.2 2.3 4.9E-05 33.7 10.2 32 36-68 10-41 (260)
490 PRK00258 aroE shikimate 5-dehy 92.2 0.31 6.7E-06 40.3 5.2 33 36-70 124-156 (278)
491 TIGR02685 pter_reduc_Leis pter 92.2 0.93 2E-05 36.4 7.9 31 38-69 4-34 (267)
492 PLN03154 putative allyl alcoho 92.1 0.48 1E-05 40.1 6.4 95 36-137 160-259 (348)
493 PRK12745 3-ketoacyl-(acyl-carr 92.1 1.7 3.6E-05 34.3 9.2 31 37-68 4-34 (256)
494 PRK12743 oxidoreductase; Provi 92.1 1.3 2.8E-05 35.3 8.5 32 37-69 4-35 (256)
495 PRK06483 dihydromonapterin red 92.0 3.8 8.3E-05 32.0 11.1 31 37-68 4-34 (236)
496 TIGR03451 mycoS_dep_FDH mycoth 92.0 0.95 2.1E-05 38.1 8.1 97 36-138 178-278 (358)
497 PRK08264 short chain dehydroge 92.0 0.33 7.2E-06 38.0 5.0 32 36-68 7-39 (238)
498 PRK12825 fabG 3-ketoacyl-(acyl 92.0 0.33 7.2E-06 37.7 4.9 34 35-69 6-39 (249)
499 PRK06395 phosphoribosylamine-- 91.9 3 6.4E-05 37.0 11.4 92 35-134 2-93 (435)
500 TIGR00514 accC acetyl-CoA carb 91.9 1.7 3.7E-05 38.2 9.9 97 35-134 2-103 (449)
No 1
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.97 E-value=6.9e-31 Score=194.54 Aligned_cols=119 Identities=34% Similarity=0.554 Sum_probs=106.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
|||+|+|++||||+.+++.+.++++++|++++++. ..|+|+++++|.. +.++++++|+++++. .+||+||
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence 79999998899999999999999999999999964 3799999999986 889999999999996 4999999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
||+|+...++++.|+++|+|+|+|||||++++.+.|++++++.|++|+.
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~ 122 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAP 122 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-S
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeC
Confidence 9999999999999999999999999999999999999999999999974
No 2
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=196.28 Aligned_cols=121 Identities=31% Similarity=0.428 Sum_probs=112.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV 110 (161)
.||||+|+|++||||+.+++++.+.|+++|++++++. ..|.|.++++|.. ..++++++|+.... ..+||+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~------~~~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVK------ADADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhcc------cCCCEE
Confidence 4799999999999999999999999999999999964 4678999999885 88999999976665 489999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
||||+|+...++++.|+++|+++|+|||||++++.++|.+++++.|+|++.
T Consensus 74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~ 124 (266)
T COG0289 74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAP 124 (266)
T ss_pred EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEec
Confidence 999999999999999999999999999999999999999999999999874
No 3
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.92 E-value=4.9e-24 Score=176.18 Aligned_cols=119 Identities=30% Similarity=0.460 Sum_probs=106.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~---~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI 111 (161)
||||+|+|++|+||+.+++.+.+.|+++|++++|+. ..+++.+++.+.. +.++++++|++++ . ..+||||
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI 73 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI 73 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence 589999998899999999999999999999999942 2356777777664 5679999999998 4 3799999
Q ss_pred EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh--cCeeec
Q 031341 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMVST 160 (161)
Q Consensus 112 DfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~--~~Vv~t 160 (161)
|||+|+.+.++++.|+++|+|+|+||||+++++.++|.++|++ .|++++
T Consensus 74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a 124 (266)
T TIGR00036 74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIA 124 (266)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEE
Confidence 9999999999999999999999999999999999999999999 788875
No 4
>PLN02775 Probable dihydrodipicolinate reductase
Probab=99.91 E-value=5.6e-24 Score=177.30 Aligned_cols=124 Identities=22% Similarity=0.319 Sum_probs=105.8
Q ss_pred CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeee--CCHHHHHhcccccCC
Q 031341 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQSKA 106 (161)
Q Consensus 30 ~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~-~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~ 106 (161)
+|+++.|||+|.|++|+||+++++.+.. ++++||+.+|+...|.+.+ ++.| .+++++ +|+++++.++. ...
T Consensus 6 ~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~-~~~ 79 (286)
T PLN02775 6 SPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVK-AEY 79 (286)
T ss_pred CCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhh-ccC
Confidence 4456669999999999999999999998 9999999999766676766 6654 278888 99999986410 126
Q ss_pred cc-EEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341 107 RA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (161)
Q Consensus 107 ~D-VVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (161)
+| |+||||+|+...++++.|+++|+|+|+|||||++++.+++.+ +++.|+|++
T Consensus 80 ~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~-~~~i~vv~a 133 (286)
T PLN02775 80 PNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVE-ESGVYAVIA 133 (286)
T ss_pred CCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh-cCCccEEEE
Confidence 99 999999999999999999999999999999999998887766 567899986
No 5
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=99.90 E-value=4.3e-23 Score=171.25 Aligned_cols=114 Identities=24% Similarity=0.306 Sum_probs=102.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCeee------eCCHHHHHhcccccCCcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA 108 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav-vd~~~~g~~~~~~~g~~~~~~i~v------~~dl~~~l~~~~~~~~~D 108 (161)
+||+|.||+|+||+++++++.. ++++||+. +|+...+.+.+++.|. ++++ +++++++++ ..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence 6899999999999999999987 99999998 8876667788887753 7888 899999986 3599
Q ss_pred -EEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341 109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (161)
Q Consensus 109 -VVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (161)
|+||||+|+.+.++++.|+++|+|+|+|||||++++.++|.+.++ .|+|++
T Consensus 71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~-i~~l~a 122 (275)
T TIGR02130 71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAK-HPAVIA 122 (275)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcC-CCEEEE
Confidence 999999999999999999999999999999999999999988764 999986
No 6
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.89 E-value=3.1e-22 Score=164.53 Aligned_cols=114 Identities=27% Similarity=0.359 Sum_probs=100.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
||||+|+|++|+||+.+++.+...++++|++++|+.... .... ...+++.++|+++++. ++|+|||||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--LVGQ----GALGVAITDDLEAVLA------DADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--cccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence 589999998899999999999988999999999965321 1111 1467888999999984 699999999
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341 115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (161)
+|+.+.+++..|+++|+|+|+||||++.++.++|.+++++.|++++
T Consensus 69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s 114 (257)
T PRK00048 69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIA 114 (257)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999999999999999899999986
No 7
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.76 E-value=1.4e-17 Score=120.22 Aligned_cols=113 Identities=27% Similarity=0.321 Sum_probs=97.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|||+|+| +|++|+.+...+.+. +++++++++|+.. .+...+. +.++++.|+|++++++. .++|+|+.+|
T Consensus 1 i~v~iiG-~G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIG-AGSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT 70 (120)
T ss_dssp EEEEEES-TSHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence 7999999 599999999999887 9999999999753 2222222 25688899999999984 6899999999
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCee
Q 031341 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv 158 (161)
++..+.+++..++++|+|+++++| +.+.++.++|.+++++.++.
T Consensus 71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 999999999999999999999999 67999999999999998754
No 8
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.70 E-value=3.3e-16 Score=129.41 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=92.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
||||+|+|+ |+||+.+++.+.+.+++++++++++........+.. ..++++++|++++ . .++|+|+++|
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t 69 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA 69 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence 689999995 999999999999999999999997543212222221 1267889999988 5 4899999999
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCCC-CC-HHHHHHHHHHhhhcCee
Q 031341 115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMV 158 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vVigttg-~~-~e~~~~L~~~A~~~~Vv 158 (161)
+|..+.+++..++++|+|+|+++++ ++ .+..++|.++|++.++.
T Consensus 70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 9999999999999999999999997 54 45568899999998754
No 9
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=127.11 Aligned_cols=117 Identities=22% Similarity=0.228 Sum_probs=96.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVI 111 (161)
.++||+|+|+.|.+++.++..+...++ +++++++|++. .++..+. +.+++ ..|+|++++++. .++|+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V~ 72 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAVY 72 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEE
Confidence 579999999633666779999998888 79999999753 2222332 24566 489999999984 6699999
Q ss_pred EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~ 159 (161)
.+|++..+.+++..|+++||||++++| ..|.++.++|.++|+++++..
T Consensus 73 Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 73 IATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred EcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 999999999999999999999999999 789999999999999987654
No 10
>PRK11579 putative oxidoreductase; Provisional
Probab=99.63 E-value=3.8e-15 Score=126.39 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=95.3
Q ss_pred CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
++||+|+| +|.||+. ++..+...++++|++++|++. ....+ ...+.++|+|++++++. .++|+|+.+
T Consensus 4 ~irvgiiG-~G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~ell~~----~~vD~V~I~ 71 (346)
T PRK11579 4 KIRVGLIG-YGYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKA-----DWPTVTVVSEPQHLFND----PNIDLIVIP 71 (346)
T ss_pred cceEEEEC-CCHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHh-----hCCCCceeCCHHHHhcC----CCCCEEEEc
Confidence 59999999 5999984 788888889999999999643 11111 01245789999999974 689999999
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~ 159 (161)
|++..+.+++..|+++||||++++| ..+.++.++|.++|+++++++
T Consensus 72 tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 72 TPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 9999999999999999999999999 789999999999999988764
No 11
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=99.57 E-value=1e-14 Score=124.42 Aligned_cols=124 Identities=21% Similarity=0.218 Sum_probs=101.1
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCC-----------------CCCCeeeeCCH
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-----------------QPLEIPVMSDL 94 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-~g~~~~~~~g~~-----------------~~~~i~v~~dl 94 (161)
-.++||+++|+ |.||+.++.++...|+++++++.|+.. ..++..+.+|.+ +...+.+++|.
T Consensus 15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~ 93 (438)
T COG4091 15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA 93 (438)
T ss_pred CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence 35799999995 999999999999999999999999532 112222222211 24457788999
Q ss_pred HHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 95 TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
+.++.. ..+||+||.| .|+...++...++.||||+|+-....+..--..|++.|++.+|+|||
T Consensus 94 ~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~ 157 (438)
T COG4091 94 ELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSG 157 (438)
T ss_pred hhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEec
Confidence 998874 8899999999 79999999999999999999987777666678999999999999986
No 12
>PRK10206 putative oxidoreductase; Provisional
Probab=99.56 E-value=3.4e-14 Score=121.02 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=93.2
Q ss_pred CeeEEEEcCCCHHHH-HHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEE
Q 031341 35 NIKVIINGAVKEIGR-AAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr-~i~~~l~~-~~~~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVI 111 (161)
||||||+| +|++++ .++..+.. .++++|++++|+... . .+.. ..+ ++++|+|++++++. .++|+|+
T Consensus 1 ~irvgiiG-~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~--~-~~~~---~~~~~~~~~~~~~ell~~----~~iD~V~ 69 (344)
T PRK10206 1 VINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAK--P-EEQA---PIYSHIHFTSDLDEVLND----PDVKLVV 69 (344)
T ss_pred CeEEEEEC-CCHHHhheehhhHhcCCCCEEEEEEEcCChh--H-HHHH---HhcCCCcccCCHHHHhcC----CCCCEEE
Confidence 68999999 599774 56776644 578999999997531 1 1222 133 36789999999974 6899999
Q ss_pred EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 112 DfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~ 159 (161)
.+|++..+.+++..|+++||||++++| ..+.++.++|.++|+++++++
T Consensus 70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999999999999 678999999999999998764
No 13
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.56 E-value=3.2e-14 Score=121.78 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=90.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
+++||+|+|+ +||+.+++.+.+.+ +++|+|++|+.. .+..+++ +++|++.|+|++++++. .++|+|..
T Consensus 2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~d----~Di~~V~i 70 (343)
T TIGR01761 2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPDD----IDIACVVV 70 (343)
T ss_pred CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhcC----CCEEEEEe
Confidence 4699999995 68999999999888 899999999753 2233333 25688899999999962 34444443
Q ss_pred cc--CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 113 fT--~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
-| ++..+.+.+..|+++||||++++| +..++.++|.++|+++++++
T Consensus 71 pt~~P~~~H~e~a~~aL~aGkHVL~EKP-la~~Ea~el~~~A~~~g~~l 118 (343)
T TIGR01761 71 RSAIVGGQGSALARALLARGIHVLQEHP-LHPRDIQDLLRLAERQGRRY 118 (343)
T ss_pred CCCCCCccHHHHHHHHHhCCCeEEEcCC-CCHHHHHHHHHHHHHcCCEE
Confidence 22 356789999999999999999998 55799999999999998875
No 14
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.54 E-value=7.6e-14 Score=115.27 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=92.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
||||+|+| +|+||+.+++.+.+.+ ++++++++|++. ....++. +.++.+.++|+++++. ++|+|+++
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a---~~~~~~~~~~~~ell~------~~DvVvi~ 68 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNL--EKAENLA---SKTGAKACLSIDELVE------DVDLVVEC 68 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHH---HhcCCeeECCHHHHhc------CCCEEEEc
Confidence 58999999 5999999999998764 899999999753 2222332 1346778899999884 79999999
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCe
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASM 157 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigttg~--~~e~~~~L~~~A~~~~V 157 (161)
++|+.+.+++..++++|+++++.++|. +.+..++|.++|++.++
T Consensus 69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~ 114 (265)
T PRK13304 69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC 114 (265)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999988753 77778899999999874
No 15
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=2.5e-13 Score=115.52 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=99.6
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCC---CeeeeCCHHHHHhcccccCC
Q 031341 32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMSDLTMVLGSISQSKA 106 (161)
Q Consensus 32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~---~i~v~~dl~~~l~~~~~~~~ 106 (161)
.+..+|+||+|+ |+|++.+++.+...| +++++|+++++. ..+-+++ ++. +.++|.++|+++.. +.
T Consensus 3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~--~~A~~fA---q~~~~~~~k~y~syEeLakd----~~ 72 (351)
T KOG2741|consen 3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSL--ERAKEFA---QRHNIPNPKAYGSYEELAKD----PE 72 (351)
T ss_pred CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccH--HHHHHHH---HhcCCCCCccccCHHHHhcC----CC
Confidence 455699999996 999999999999999 999999999743 3333444 233 44789999999874 88
Q ss_pred ccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeee
Q 031341 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~ 159 (161)
+|||+.-++...+++.+..++++||||.+++| ..+.+|.++|.++|+++++++
T Consensus 73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~ 126 (351)
T KOG2741|consen 73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFF 126 (351)
T ss_pred cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEE
Confidence 89988666667889999999999999999998 789999999999999999875
No 16
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.46 E-value=8.8e-13 Score=109.42 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=88.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
++||+|+| +|+||+.+++.+.. .+++++++++|+.. ....++. .+++. +.++++++++. ++|+|+.
T Consensus 6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE 73 (271)
T ss_pred eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence 49999999 59999999999987 48999999999753 1222222 13443 56789999975 6899999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
+++++.+.+++..++++|+++++..++ +.++.++|.++|++.++-
T Consensus 74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~g-al~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 74 AAPASVLRAIVEPVLAAGKKAIVLSVG-ALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred CCCcHHHHHHHHHHHHcCCcEEEecch-hHHhHHHHHHHHHHcCCE
Confidence 999999999999999999999987654 234678899999998653
No 17
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.45 E-value=6.3e-13 Score=113.45 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=88.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee------eeCC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP------VMSD 93 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~---------~~eLvavvd~~-----~~g~~~~~~~g~~~~~~-i~------v~~d 93 (161)
++||+|+| +|.||+.+++.+.+.+ +++|++++|+. ..|.+..++.....+.+ .. .+.|
T Consensus 2 ~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 48999999 5999999999998664 79999999953 23444433322211222 11 2358
Q ss_pred HHHHHhcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 94 LTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
+++++.. .++|+|||+|.+.. ..++++.++++|+|||+++.++.....++|.++|++.++.+
T Consensus 81 ~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~ 147 (341)
T PRK06270 81 GLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRF 147 (341)
T ss_pred HHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEE
Confidence 8998864 68999999997643 37899999999999999876655566789999999987643
No 18
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.40 E-value=2.3e-12 Score=112.97 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=90.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK 105 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~---------~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~ 105 (161)
++||+|+| +|.+|+.+++.+.+++ +++|+++++++.. +... . ...+..+++|+++++.. .
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~--~~~~---~-~~~~~~~~~d~~~ll~d----~ 71 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--KDRG---V-DLPGILLTTDPEELVND----P 71 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh--hccC---C-CCcccceeCCHHHHhhC----C
Confidence 59999999 5999999999887653 7899999996531 1111 1 12345678999999873 6
Q ss_pred CccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 106 ~~DVVIDfT~p-~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
++|+|++.|.+ +.+.++++.|+++|+|||+...++..++.++|.++|+++++.
T Consensus 72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 79999999854 667899999999999999988778888899999999999874
No 19
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.40 E-value=3.1e-12 Score=108.77 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=86.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
+|||+|+| +|+||+.+++.+...|++||+|++++...+ ...+ ..++..+.|.++++ .++|+|+.+|
T Consensus 3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~-~~~~------~~~v~~~~d~~e~l------~~iDVViIct 68 (324)
T TIGR01921 3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAE-TLDT------ETPVYAVADDEKHL------DDVDVLILCM 68 (324)
T ss_pred CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHH-HHhh------cCCccccCCHHHhc------cCCCEEEEcC
Confidence 59999999 699999999999999999999999975311 1111 22333345666665 3799999888
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCC-CC-CHHHHHHHHHHhhhc---CeeecC
Q 031341 115 DASTVYDNVKQATAFGMRSVVYVP-HI-QLETVSALSAFCDKA---SMVSTG 161 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vVigtt-g~-~~e~~~~L~~~A~~~---~Vv~tg 161 (161)
++..+.+.+..++++|+|+|...+ .. .++..+.|.++|++. .++.+|
T Consensus 69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~G 120 (324)
T TIGR01921 69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTG 120 (324)
T ss_pred CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 888889999999999999998764 22 257788999999963 455554
No 20
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=99.36 E-value=1.8e-12 Score=94.13 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCchhH
Q 031341 43 AVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV 119 (161)
Q Consensus 43 a~G~mGr~i~~~l~~~~---~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~ 119 (161)
++|.+|+.+++++.+.+ ++++++++++. ...+...... ..+..++.+++++++. ..+|+|||+|.++..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAAS---FPDEAFTTDLEELIDD----PDIDVVVECTSSEAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHH---HTHSCEESSHHHHHTH----TT-SEEEE-SSCHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhh---cccccccCCHHHHhcC----cCCCEEEECCCchHH
Confidence 15999999999999876 89999999976 1111111110 2345678999999863 479999999999999
Q ss_pred HHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCee
Q 031341 120 YDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMV 158 (161)
Q Consensus 120 ~~~~~~al~~g~~vVigttg~--~~e~~~~L~~~A~~~~Vv 158 (161)
.+++..++++|+|||+...+. +....++|.++|+++++-
T Consensus 73 ~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~ 113 (117)
T PF03447_consen 73 AEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVR 113 (117)
T ss_dssp HHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence 999999999999999987654 347788999999998763
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.32 E-value=1.1e-11 Score=105.99 Aligned_cols=96 Identities=23% Similarity=0.256 Sum_probs=75.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---------Ccchh----hhhc-CCCCCCeeeeCCHHHHHhc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---------GEDIG----MVCD-MEQPLEIPVMSDLTMVLGS 100 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~---------g~~~~----~~~g-~~~~~~i~v~~dl~~~l~~ 100 (161)
|+||+|+|+ |+|||.+++.+..+++++|+++.|+... |.+.. +..+ . ...+++++.++++++.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~-~~~~i~V~~~~~el~~- 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAF-EEAGIPVAGTIEDLLE- 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccc-cCCceEEcCChhHhhc-
Confidence 689999996 9999999999999999999999995321 11100 0000 1 1236778888888874
Q ss_pred ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341 101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt 138 (161)
++|+|+|||.+..+.+++..++++|+++|.-.+
T Consensus 78 -----~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 78 -----KADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred -----cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 799999999999999999999999999887543
No 22
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.25 E-value=1.2e-10 Score=96.58 Aligned_cols=108 Identities=9% Similarity=0.151 Sum_probs=88.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
+||+|+| +|.||+.+++.+.. .++++|+++.++.. .....+. ..+++++|+++++. .++|+||++
T Consensus 3 ~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~-----~~~~~~~~l~~ll~-----~~~DlVVE~ 69 (267)
T PRK13301 3 HRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALA-----GRVALLDGLPGLLA-----WRPDLVVEA 69 (267)
T ss_pred eEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhh-----ccCcccCCHHHHhh-----cCCCEEEEC
Confidence 7999999 59999999999875 35699999998653 1222222 12678899999876 489999999
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCC-C-CHHHHHHHHHHhhhcC
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKAS 156 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigttg-~-~~e~~~~L~~~A~~~~ 156 (161)
.+|.++.++....|++|+++++..+| | +++-.++|.++|++.+
T Consensus 70 A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g 114 (267)
T PRK13301 70 AGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG 114 (267)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999876 3 5666789999998864
No 23
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.23 E-value=8.2e-11 Score=98.60 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=77.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
++||+|+| +|+||+.++..+.+.+++++++++|++... ....++ .++|++. ++++++++.. .++|+|+++
T Consensus 1 klrVAIIG-~G~IG~~h~~~ll~~~~~elvaV~d~d~es-~~la~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia 71 (285)
T TIGR03215 1 KVKVAIIG-SGNIGTDLMYKLLRSEHLEMVAMVGIDPES-DGLARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA 71 (285)
T ss_pred CcEEEEEe-CcHHHHHHHHHHHhCCCcEEEEEEeCCccc-HHHHHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence 48999999 599999998888889999999999964321 111122 2467765 5689999874 679999999
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYVPH 139 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigttg 139 (161)
|++..+.+++..++++|++++..|+-
T Consensus 72 Tp~~~H~e~a~~al~aGk~VIdekPa 97 (285)
T TIGR03215 72 TSAKAHARHARLLAELGKIVIDLTPA 97 (285)
T ss_pred CCcHHHHHHHHHHHHcCCEEEECCcc
Confidence 99999999999999999999998873
No 24
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.22 E-value=9.5e-11 Score=100.05 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=83.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCCCCCC-eeee--------
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPVM-------- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~---------~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~-i~v~-------- 91 (161)
++||+|+| +|.+|+.+++.+.+. -+++++++.|+. ..|.+..++.....+.+ +.-+
T Consensus 2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 48999999 699999999988763 148999999953 23444433222111111 0111
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (161)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~ 156 (161)
.++++++.. .++||+||+|.++.+.++...++++|+|||+++++.-....++|.++|++++
T Consensus 81 ~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~ 141 (336)
T PRK08374 81 FSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERN 141 (336)
T ss_pred CCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcC
Confidence 267788753 5799999999999999999999999999999998743345667777777763
No 25
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.20 E-value=1.9e-10 Score=84.21 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=71.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCC-CCeeeeC-CHHHHHhcccccCCccEEEEc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQP-LEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-~g~~~~~~~g~~~~-~~i~v~~-dl~~~l~~~~~~~~~DVVIDf 113 (161)
||+|+|++|.+|+.+++.|.++|.++++.+++++. .|++..+..+.... .+..+.+ +.++ +. +.|+|+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE-LS------DVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH-HT------TESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH-hh------cCCEEEec
Confidence 79999999999999999999999999999999776 78887766542111 1233333 3333 33 79999966
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeC
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigt 137 (161)
+......+.+..+++.|+.||--+
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s 97 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLS 97 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESS
T ss_pred CchhHHHHHHHHHhhCCcEEEeCC
Confidence 666677899999999999876433
No 26
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.18 E-value=1.9e-10 Score=97.02 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=78.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhccccc---CCccE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQS---KARAV 109 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~---~~~DV 109 (161)
+++||+|+| +|++|+.++..+.+.+++++++++|++.. .+....+ .++|++. +++++++++ + .++|+
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~e-s~gla~A---~~~Gi~~~~~~ie~LL~----~~~~~dIDi 73 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPE-SDGLARA---RRLGVATSAEGIDGLLA----MPEFDDIDI 73 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChh-hHHHHHH---HHcCCCcccCCHHHHHh----CcCCCCCCE
Confidence 369999999 79999999988888999999999996532 1111222 2467776 589999986 2 36999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341 110 VIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (161)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~g~~vVigttg 139 (161)
|+|+|.+..+.+++..++++|++++..|+.
T Consensus 74 Vf~AT~a~~H~e~a~~a~eaGk~VID~sPA 103 (302)
T PRK08300 74 VFDATSAGAHVRHAAKLREAGIRAIDLTPA 103 (302)
T ss_pred EEECCCHHHHHHHHHHHHHcCCeEEECCcc
Confidence 999999999999999999999999988863
No 27
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=99.18 E-value=2.9e-10 Score=92.32 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=86.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
++|+++|| |.+|+.+++.+... -++|+++++|+.. .++.++.. ..+.+..+++++++. .+|+++++.
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~~---~~~~~~~s~ide~~~------~~DlvVEaA 68 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELEA---SVGRRCVSDIDELIA------EVDLVVEAA 68 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHHh---hcCCCccccHHHHhh------ccceeeeeC
Confidence 68999995 99999999988744 5799999999753 22222221 234444489999985 799999999
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCCC-C-CHHHHHHHHHHhhhcC
Q 031341 115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKAS 156 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vVigttg-~-~~e~~~~L~~~A~~~~ 156 (161)
+|+++.+++..+|++|+++++-.+| | +++-.+.+.++|+..+
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~ 112 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGG 112 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCC
Confidence 9999999999999999999998886 4 4455678888888753
No 28
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.09 E-value=1.1e-09 Score=104.74 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=90.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcCCCCC-C---eee-eCCHHH
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPL-E---IPV-MSDLTM 96 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e------------Lvavvd~~~~g~~~~~~~g~~~~~-~---i~v-~~dl~~ 96 (161)
+|-||+|+|| |+||+.+++.+.+.++.+ ++.++|+.. .++..+.. .. + +.+ +.|.++
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~---~~~~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVE---GIENAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHH---hcCCCceEEeecCCHHH
Confidence 4679999996 999999999999999887 788898643 12222221 11 2 445 678887
Q ss_pred HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
+.+.+ ..+|+||.++++..+.+.++.|+++|+|+|+.+ ++.++..+|.+.|+++++.+
T Consensus 642 L~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~ 699 (1042)
T PLN02819 642 LLKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITI 699 (1042)
T ss_pred HHHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEE
Confidence 76522 269999999999999999999999999999877 77888999999999998764
No 29
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.08 E-value=8.8e-10 Score=94.25 Aligned_cols=99 Identities=19% Similarity=0.108 Sum_probs=72.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|+||+|+||+|.+|+.+++.+.++|++++++++++...++.+.+..+.........++++++... .++|+|+.++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-----AGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-----cCCCEEEECC
Confidence 68999999999999999999999999999999996555554443322100000113455554332 4799999778
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCC
Q 031341 115 DASTVYDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vVigtt 138 (161)
++..+.+.+..++++|++||-=..
T Consensus 77 P~~~~~~~v~~a~~aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLEAGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHhCCCEEEECCc
Confidence 778888999999999999885443
No 30
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.02 E-value=2.8e-09 Score=90.84 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=82.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCCCCCCe--eeeC--CHHHHHh
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI--PVMS--DLTMVLG 99 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~-------~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~i--~v~~--dl~~~l~ 99 (161)
|||+|+| +|.+|+.+++.+.+. .+++++++.|+. ..|-++.++.....+..+ ...+ ++++++.
T Consensus 1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 5899999 599999999998764 578999999953 234444443221111001 1112 6777775
Q ss_pred cccccCCccEEEEccCc-h---hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 100 ~~~~~~~~DVVIDfT~p-~---~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
.++|++||+|.. . ....+.+.++++|+|||+..-+.-....++|.++|+++++-
T Consensus 80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 589999999942 2 24678899999999999877654456678999999988653
No 31
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=99.01 E-value=3e-09 Score=88.93 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=93.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVID 112 (161)
|+|.+.| +|..|...++.+..+|+++|||+.+++ +.|+|++++.|.. +.++...++++..++ ..+| ++.+
T Consensus 3 ~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlA-----tl~~~~~y~ 75 (350)
T COG3804 3 LRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLA-----TLADAVIYA 75 (350)
T ss_pred ceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeeccccccee-----ccccceeee
Confidence 7999999 799999999999999999999999963 5799999999997 688999999999887 3455 4444
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCC------CCCHHHHHHHHHHhhhcCe
Q 031341 113 FTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASM 157 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vVigtt------g~~~e~~~~L~~~A~~~~V 157 (161)
.-.|. .+....++..|++||.-.+ ...+|..+++.++|.+++.
T Consensus 76 ~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn 124 (350)
T COG3804 76 PLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGN 124 (350)
T ss_pred cccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCC
Confidence 44563 7788899999999876432 3468889999999999876
No 32
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=98.93 E-value=5.6e-09 Score=85.04 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=72.9
Q ss_pred CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341 60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (161)
Q Consensus 60 ~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg 139 (161)
+++|++++|+.. .+..++. ..+++++|+|+++++. .++|+|+.+|++..+.+++..++++|+|+++.+++
T Consensus 1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g 70 (229)
T TIGR03855 1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG 70 (229)
T ss_pred CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence 579999999753 2222333 2457788999999986 47999999999999999999999999999999885
Q ss_pred -C-CHHHHHHHHHHhhhcCee
Q 031341 140 -I-QLETVSALSAFCDKASMV 158 (161)
Q Consensus 140 -~-~~e~~~~L~~~A~~~~Vv 158 (161)
+ +.++.++|.++|++.++.
T Consensus 71 Alad~e~~~~l~~aA~~~g~~ 91 (229)
T TIGR03855 71 ALADRELRERLREVARSSGRK 91 (229)
T ss_pred ccCCHHHHHHHHHHHHhcCCE
Confidence 4 678899999999998643
No 33
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.77 E-value=1.1e-07 Score=67.18 Aligned_cols=90 Identities=22% Similarity=0.282 Sum_probs=70.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
++.||+|+|+ |++|++++....+..+++++++.|.+.. +.++. -.++|+|.+++++.+. .++|+.|.+
T Consensus 2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~--~~G~~-----i~gipV~~~~~~l~~~----~~i~iaii~ 69 (96)
T PF02629_consen 2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPE--KIGKE-----IGGIPVYGSMDELEEF----IEIDIAIIT 69 (96)
T ss_dssp TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTT--TTTSE-----ETTEEEESSHHHHHHH----CTTSEEEEE
T ss_pred CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCC--ccCcE-----ECCEEeeccHHHhhhh----hCCCEEEEE
Confidence 4589999996 9999999877778899999999995431 22211 2489999999999874 249998978
Q ss_pred cCchhHHHHHHHHHHcCCcEEE
Q 031341 114 TDASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVi 135 (161)
.+++.+.+.+..++++|++.|+
T Consensus 70 VP~~~a~~~~~~~~~~gIk~i~ 91 (96)
T PF02629_consen 70 VPAEAAQEVADELVEAGIKGIV 91 (96)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEE
Confidence 8778888999999999988775
No 34
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.77 E-value=7.5e-08 Score=82.81 Aligned_cols=120 Identities=16% Similarity=0.158 Sum_probs=79.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCC-CCCe--eeeCCHHHH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTMV 97 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~---------~~eLvavvd~~~-----~g~~~~~~~g~~~-~~~i--~v~~dl~~~ 97 (161)
+++|+|+| .|.+|+.+++.|.+.. +++++++.++.. .|.+..+++.... ..+. ....+.++.
T Consensus 2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 48999999 6999999999987543 578999988532 1323222221100 0000 012233333
Q ss_pred HhcccccCCccEEEEccCc-----hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 98 LGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p-----~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
+.. ..+.|||||.|.. +....+++.++++|+|||...-+.-....++|.++|+++++-
T Consensus 81 ~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~ 143 (346)
T PRK06813 81 ATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVR 143 (346)
T ss_pred hcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCe
Confidence 321 1258999999864 355788899999999999887665556678999999998654
No 35
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.74 E-value=1e-07 Score=81.76 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=65.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhhcCC-CCCCeeee-CCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDME-QPLEIPVM-SDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-~~~g~~~~~~~g~~-~~~~i~v~-~dl~~~l~~~~~~~~~DVVID 112 (161)
+||+|+||||.+|+++++.+.++|++++++++++ ...|+.+.+..+.. ...+..+. .+.++++. ++|+|+-
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE------DADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc------CCCEEEE
Confidence 5899999999999999999999999999988664 33566554432210 00011121 14455542 6999994
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 113 FTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vVigt 137 (161)
+++...+.+.+..++++|++||-=+
T Consensus 75 alP~~~s~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 75 ALPHGVSAELAPELLAAGVKVIDLS 99 (346)
T ss_pred CCCchHHHHHHHHHHhCCCEEEeCC
Confidence 4444455788888999999988533
No 36
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.73 E-value=8.7e-08 Score=82.07 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=68.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCC------C-CCCeeee-CCHHHHHhcccccC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDME------Q-PLEIPVM-SDLTMVLGSISQSK 105 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav-vd~~~~g~~~~~~~g~~------~-~~~i~v~-~dl~~~l~~~~~~~ 105 (161)
|+||+|+|++|.+|+++++.+.++|+++|+++ .++...|++..+..+.. . ..++.+. .+.++ +.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~------ 75 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD------ 75 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc------
Confidence 58999999999999999999999999999999 44445666655432220 0 0122332 24443 33
Q ss_pred CccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 106 ~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
++|+|+++++.....+++..+.+.|+.+|.-+
T Consensus 76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred CCCEEEEeCChhHHHHHHHHHHHCCCEEEECC
Confidence 79999977766666788888889999988544
No 37
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=98.71 E-value=1.2e-07 Score=81.08 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=66.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcC------CC-CCCeeeeCCHH-HHHhcccccCC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDM------EQ-PLEIPVMSDLT-MVLGSISQSKA 106 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-~~g~~~~~~~g~------~~-~~~i~v~~dl~-~~l~~~~~~~~ 106 (161)
+||+|+|++|+||+.+++.+.++++++|++++++. ..|++..+.... .. -.+..+ .+++ +.+ .+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~ 73 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPI-VEPEPVAS------KD 73 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEE-EeCCHHHh------cc
Confidence 58999999999999999999999999999998743 356665543321 00 011122 2222 223 37
Q ss_pred ccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341 107 RAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVi 135 (161)
+|+|+.++++..+.++...+.++|+++|.
T Consensus 74 ~DvVf~a~p~~~s~~~~~~~~~~G~~VID 102 (341)
T TIGR00978 74 VDIVFSALPSEVAEEVEPKLAEAGKPVFS 102 (341)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 99999777777778899999999999874
No 38
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.67 E-value=2.3e-07 Score=71.10 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=70.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|+||+++| .|.||+.+++.+. ..++++. ++|++. ....++. +.++...++++++.+ ..|+|+-+.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLA-KAGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHH-HTTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHH-hcCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence 78999999 6999999999997 6689865 678643 2233332 346788899999986 579988655
Q ss_pred Cchh-HHHHHHH-----HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 115 DAST-VYDNVKQ-----ATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 115 ~p~~-~~~~~~~-----al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
++.. ..+.+.. .+..|.-+ +-++..++++.+++.+..++.++-|
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~ii-id~sT~~p~~~~~~~~~~~~~g~~~ 115 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGKII-IDMSTISPETSRELAERLAAKGVRY 115 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTEEE-EE-SS--HHHHHHHHHHHHHTTEEE
T ss_pred ccchhhhhhhhhhHHhhccccceEE-EecCCcchhhhhhhhhhhhhcccee
Confidence 4433 3343332 23445544 4455588899999999988877654
No 39
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.66 E-value=1.9e-07 Score=79.79 Aligned_cols=115 Identities=15% Similarity=0.070 Sum_probs=80.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCH-----HHHHh
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-----TMVLG 99 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~---------~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl-----~~~l~ 99 (161)
+++||+|+| .|.+|+.+++.+.+. -+++++++.+++..-.+--+.. +. -...++. .+++.
T Consensus 2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~ 75 (333)
T COG0460 2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLL----NA-EVWTTDGALSLGDEVLL 75 (333)
T ss_pred ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccccccc----ch-hhheecccccccHhhhc
Confidence 459999999 699999999999875 4678999999643111100110 00 1223344 44443
Q ss_pred cccccCCccEEEEccCc--hhH--HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 100 SISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 100 ~~~~~~~~DVVIDfT~p--~~~--~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
+..+|+|++.+.. +.. .++.+.++++|+|||...-.+-.....+|.++|+++++.
T Consensus 76 ----~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~ 134 (333)
T COG0460 76 ----DEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVK 134 (333)
T ss_pred ----cccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCe
Confidence 2689999998744 333 489999999999999887666566788999999998743
No 40
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=98.65 E-value=2e-07 Score=81.10 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHH-HhcccccCCccEEEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSISQSKARAVVID 112 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~-l~~~~~~~~~DVVID 112 (161)
.++||+|+||+|..|+++++.+.++|+++|+.+.++...|+.+.+........+.+.+.+++.. +. +.|+|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~------~~DvVf- 109 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS------DVDAVF- 109 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc------CCCEEE-
Confidence 5689999999999999999999999999999998865556544322110001122223334433 32 799999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEE
Q 031341 113 FTDASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vVi 135 (161)
++.|+.....+...++.|+.||-
T Consensus 110 ~Alp~~~s~~i~~~~~~g~~VID 132 (381)
T PLN02968 110 CCLPHGTTQEIIKALPKDLKIVD 132 (381)
T ss_pred EcCCHHHHHHHHHHHhCCCEEEE
Confidence 77777665444444678877764
No 41
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=98.63 E-value=9.9e-08 Score=73.24 Aligned_cols=99 Identities=24% Similarity=0.258 Sum_probs=64.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------------Ccchhhhh----cCC-CCCCeeee--CCH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------------GEDIGMVC----DME-QPLEIPVM--SDL 94 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~--------------g~~~~~~~----g~~-~~~~i~v~--~dl 94 (161)
|||+|.| +||+||.+++.+...+++||+++-|.... |.-..++. ++. ....+.++ .++
T Consensus 1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEEC-CCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 7999999 79999999999999999999999995311 11000000 000 00012222 334
Q ss_pred HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031341 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP 138 (161)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVigtt 138 (161)
+++-.. +.++|+|+|+|..-...+.+...+++|. .||++.+
T Consensus 80 ~~i~W~---~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap 121 (151)
T PF00044_consen 80 EEIPWG---ELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAP 121 (151)
T ss_dssp GGSTHH---HHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS
T ss_pred cccccc---cccccEEEeccccceecccccccccccccceeeccc
Confidence 443221 2478999999988878888888899994 4555444
No 42
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=1.6e-07 Score=79.95 Aligned_cols=101 Identities=23% Similarity=0.220 Sum_probs=69.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEec-C---------C---CCcchh------hhhcCCCCCCeeeeCCH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS-H---------S---VGEDIG------MVCDMEQPLEIPVMSDL 94 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~-~---------~---~g~~~~------~~~g~~~~~~i~v~~dl 94 (161)
|+||+|.| +||+||.+++++.+.+ ++|+||+-|. + . .|.=.+ ...-+ ...+++++.+.
T Consensus 1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v-~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVV-NGKGIKVLAER 78 (335)
T ss_pred CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEE-CCceEEEEecC
Confidence 68999999 7999999999999998 7999999992 1 0 111000 00111 13467776555
Q ss_pred H-HHHhcccccCCccEEEEccCchhHHHHHHHHHHcC--CcEEEeCCC
Q 031341 95 T-MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPH 139 (161)
Q Consensus 95 ~-~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g--~~vVigttg 139 (161)
+ +.|.- .+.+.|+|||+|.--...+.+...++.| +.|+++-++
T Consensus 79 ~p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 79 DPANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred ChHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 5 43321 1356789999997777788888888886 777776554
No 43
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.63 E-value=5.5e-07 Score=76.75 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=62.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI 111 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVI 111 (161)
|+||+|+|++|+.|+++++.|.+ +|.++|+++......|+... +. ...+.+. +++ ..+ .++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~----g~~i~v~-d~~~~~~------~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FK----GKELKVE-DLTTFDF------SGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eC----CceeEEe-eCCHHHH------cCCCEEE
Confidence 57999999999999999999998 79999999887655555443 11 1233333 333 233 2799999
Q ss_pred EccCchhHHHHHHHHHHcCCcEE
Q 031341 112 DFTDASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 112 DfT~p~~~~~~~~~al~~g~~vV 134 (161)
.++......+.+..++++|..||
T Consensus 69 ~A~g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred ECCChHHHHHHHHHHHhCCCEEE
Confidence 44433445688888899999665
No 44
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=98.61 E-value=1e-06 Score=75.03 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=87.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
..||.|-|.||+-|+.+.+... .-+.++||.+.+..-|... . ..|+|+|++++++.+. .++|+.+.|.
T Consensus 29 ~t~v~vqGitg~~g~~h~~~~~-~ygt~iv~GV~Pgkgg~~v---~----~~Gvpvy~sv~ea~~~----~~~D~avI~V 96 (317)
T PTZ00187 29 NTKVICQGITGKQGTFHTEQAI-EYGTKMVGGVNPKKAGTTH---L----KHGLPVFATVKEAKKA----TGADASVIYV 96 (317)
T ss_pred CCeEEEecCCChHHHHHHHHHH-HhCCcEEEEECCCCCCceE---e----cCCccccCCHHHHhcc----cCCCEEEEec
Confidence 3699999999999999999887 4589999999975544321 1 1388999999999863 4599999899
Q ss_pred CchhHHHHHHHHHHcCCcEEEe-CCCCCHHHHHHHHHHhh-hcCee
Q 031341 115 DASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMV 158 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vVig-ttg~~~e~~~~L~~~A~-~~~Vv 158 (161)
+|..+.+.+..|.++|++.++- |.|+...+..++.++++ +.++.
T Consensus 97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~r 142 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTR 142 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCE
Confidence 9999999999999999988654 55887666566666664 34443
No 45
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.59 E-value=4.4e-07 Score=75.84 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=95.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.-||.|-|.+|++|..+.+.+++- +..+|+.+-+.+-|.. -.++|+|++++|++.+ ..+|+-+.|-
T Consensus 8 ~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~V 73 (293)
T COG0074 8 DTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFV 73 (293)
T ss_pred CCeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEec
Confidence 468999999999999999999876 9999999987554432 2468999999999985 6899988899
Q ss_pred CchhHHHHHHHHHHcCCcEEEe-CCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 115 DASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vVig-ttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
+|..+.+-+..|+++|+++|+- |.|....+.-++.+.+++.++..-|
T Consensus 74 p~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiG 121 (293)
T COG0074 74 PPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIG 121 (293)
T ss_pred CcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEEC
Confidence 9999999999999999888766 4478888888899999988766543
No 46
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.58 E-value=3.1e-07 Score=78.67 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=68.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC--CCeeee-CCHHHHHhcccccCCccEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVM-SDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~--~~i~v~-~dl~~~l~~~~~~~~~DVV 110 (161)
.|+||+|+|++|..|.++++.+..+|++|+..+..+...|+++.+..... . .+.++. -|.+++.. .++|+|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l-~g~~~l~~~~~~~~~~~~-----~~~Dvv 74 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNL-RGLVDLPFQTIDPEKIEL-----DECDVV 74 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCccc-ccccccccccCChhhhhc-----ccCCEE
Confidence 47999999999999999999999999999666665555788777664322 1 112221 23444432 468999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEE
Q 031341 111 IDFTDASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~~g~~vV 134 (161)
+-+++.....+.+...++.|+.||
T Consensus 75 FlalPhg~s~~~v~~l~~~g~~VI 98 (349)
T COG0002 75 FLALPHGVSAELVPELLEAGCKVI 98 (349)
T ss_pred EEecCchhHHHHHHHHHhCCCeEE
Confidence 955555555789999999999966
No 47
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=98.58 E-value=1.7e-06 Score=72.82 Aligned_cols=113 Identities=16% Similarity=0.263 Sum_probs=86.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
+-||.|.|.+|++|+.+.+.+.+. +++.+..+.+...+ .+ -.|++.|.+++++.+. ..+|++|.+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~~~---~~------v~G~~~y~sv~dlp~~----~~~DlAvi~v 73 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGKGG---TT------VLGLPVFNTVAEAVEA----TGANASVIYV 73 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCCCC---Ce------EeCeeccCCHHHHhhc----cCCCEEEEEc
Confidence 479999999999999999999864 55556556543101 11 2478999999999851 1299999788
Q ss_pred CchhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~v-Vigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
+++.+.+.++.|.+.|++. |+-+.||..++.++|.++|++.++-.-|
T Consensus 74 p~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 74 PPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 8888899999999999776 5667789876667899999998765543
No 48
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.58 E-value=4.3e-07 Score=69.42 Aligned_cols=98 Identities=22% Similarity=0.242 Sum_probs=60.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh------cCC------CCC-------Ceeee--CCH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC------DME------QPL-------EIPVM--SDL 94 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~------g~~------~~~-------~i~v~--~dl 94 (161)
+||+|+|+ |+||+.+++.+...++++++++.|.... ....-++ |.. ... .++++ .++
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~-~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDP-ETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCH-HHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCCh
Confidence 68999995 9999999999998999999999994110 1111111 000 000 11222 344
Q ss_pred HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031341 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP 138 (161)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g-~~vVigtt 138 (161)
+++... +.++|+|||+|---...+.+...++.| +.|+++.|
T Consensus 79 ~~~~w~---~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap 120 (149)
T smart00846 79 ANLPWK---ELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAP 120 (149)
T ss_pred HHCccc---ccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCC
Confidence 444321 247899999975555556666777778 55666554
No 49
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=98.58 E-value=1.5e-06 Score=72.94 Aligned_cols=113 Identities=17% Similarity=0.277 Sum_probs=88.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.-||.|.|++|++|+.+.+.+. .-++.+++.+.+...+ .+ -.|++.|.+++++.+. .++|+++.+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~-~~g~~~v~~V~p~~~~---~~------v~G~~~y~sv~dlp~~----~~~Dlavi~v 71 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQML-AYGTNIVGGVTPGKGG---TT------VLGLPVFDSVKEAVEE----TGANASVIFV 71 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHH-hCCCCEEEEECCCCCc---ce------ecCeeccCCHHHHhhc----cCCCEEEEec
Confidence 4689999999999999999986 5577788888754211 11 2478999999999851 1389999788
Q ss_pred CchhHHHHHHHHHHcCCcEE-EeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 115 DASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vV-igttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
+++.+.+.++.|.+.|++.+ +-+.||.+.+.++|.++|++.++-.-|
T Consensus 72 pa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 72 PAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 88888999999999997655 657789776668999999998776544
No 50
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.58 E-value=2.2e-07 Score=79.60 Aligned_cols=94 Identities=21% Similarity=0.192 Sum_probs=68.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCC------------CCCCeeeeCCHHHHHhccccc
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME------------QPLEIPVMSDLTMVLGSISQS 104 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~------------~~~~i~v~~dl~~~l~~~~~~ 104 (161)
|+|+| +|++|+.+++.+...++++|+|+.|.+.. ...+....|.. .+.++.+..++++++.
T Consensus 1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~----- 74 (333)
T TIGR01546 1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE----- 74 (333)
T ss_pred CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence 68999 59999999999988899999999994321 00111111110 1235677888999985
Q ss_pred CCccEEEEccCchhHHHHHHHHHHcCCcEE-EeCC
Q 031341 105 KARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVP 138 (161)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~al~~g~~vV-igtt 138 (161)
++|+|+++|....+..+....++.|...| +|.+
T Consensus 75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 79999999977888889999999985555 5433
No 51
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.52 E-value=9.5e-07 Score=75.68 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=64.1
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~--~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DVV 110 (161)
+|+||+|+||||..|+++++.|. .+|..+|+.+.+....|+.+. +.+ .+..+. .+.++ ++ ++|++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~~~~~~~~-~~------~vD~v 70 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRVREVDSFD-FS------QVQLA 70 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEEeeCChHH-hc------CCCEE
Confidence 56999999999999999999999 689999999988766666544 211 122222 12222 33 79999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEE
Q 031341 111 IDFTDASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~~g~~vV 134 (161)
+-++++....+.+..+.++|+.+|
T Consensus 71 Fla~p~~~s~~~v~~~~~~G~~VI 94 (336)
T PRK05671 71 FFAAGAAVSRSFAEKARAAGCSVI 94 (336)
T ss_pred EEcCCHHHHHHHHHHHHHCCCeEE
Confidence 944444445678888899999877
No 52
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=98.50 E-value=3.1e-06 Score=71.61 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=86.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-||.|.|.+|+.|+.+.+....- +.++++.+.+...+. + -.|+|.|.+++++.+. .++|++|.+.+
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~~---~------i~G~~~y~sv~dlp~~----~~~DlAvI~vP 78 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---E------HLGLPVFNTVAEAKAE----TKANASVIYVP 78 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCCc---e------EcCeeccCCHHHHhhc----cCCCEEEEecC
Confidence 69999999999999999988744 999999998642111 1 2478999999999851 23899887888
Q ss_pred chhHHHHHHHHHHcCCc-EEEeCCCCCHHH-HHHHHHHhhhcCeeecC
Q 031341 116 ASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMVSTG 161 (161)
Q Consensus 116 p~~~~~~~~~al~~g~~-vVigttg~~~e~-~~~L~~~A~~~~Vv~tg 161 (161)
+..+.+.++.|.++|++ +|+-+.||.+.. .+.+.++|++.++-.-|
T Consensus 79 a~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviG 126 (300)
T PLN00125 79 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIG 126 (300)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEEC
Confidence 88889999999999988 456677887553 45566678888765443
No 53
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=98.50 E-value=1.7e-06 Score=73.53 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|+||+|+|++|..|+++++.|.++|.++|+.+..+.. .+. .+.++.+. ++|+|+ |+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~---------------~~~~~~~~------~~DvvF-la 57 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA---------------AARRELLN------AADVAI-LC 57 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc---------------cCchhhhc------CCCEEE-EC
Confidence 6899999999999999999999999999999986532 111 12233332 689999 66
Q ss_pred CchhH-HHHHHHHHHcCCcEE
Q 031341 115 DASTV-YDNVKQATAFGMRSV 134 (161)
Q Consensus 115 ~p~~~-~~~~~~al~~g~~vV 134 (161)
.|+.. .+.+..+.+.|+.||
T Consensus 58 lp~~~s~~~~~~~~~~g~~VI 78 (313)
T PRK11863 58 LPDDAAREAVALIDNPATRVI 78 (313)
T ss_pred CCHHHHHHHHHHHHhCCCEEE
Confidence 66655 678888889999877
No 54
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=98.46 E-value=1.3e-06 Score=74.94 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=68.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI 111 (161)
+.+||+|+||||..|+++++.|.+ +|..+|..+.+....|+.+. +.+ .+..+. ++++... .+.|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvvf 71 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLAF 71 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEEE
Confidence 458999999999999999999998 89999999988666777665 211 245554 5555432 2689999
Q ss_pred EccCchhH-HHHHHHHHHcCCcEE
Q 031341 112 DFTDASTV-YDNVKQATAFGMRSV 134 (161)
Q Consensus 112 DfT~p~~~-~~~~~~al~~g~~vV 134 (161)
|+.|+.. .+.+..+.++|+.||
T Consensus 72 -~a~p~~~s~~~~~~~~~~g~~VI 94 (336)
T PRK08040 72 -FVAGREASAAYAEEATNAGCLVI 94 (336)
T ss_pred -ECCCHHHHHHHHHHHHHCCCEEE
Confidence 7666655 588888889999877
No 55
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.46 E-value=1.2e-06 Score=63.81 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=59.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEEEcc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVIDfT 114 (161)
||+|+|++|++|+.+++.+..++++++++++++. ..|++.....+ +..-.++.+++ +.++. .+.|+|+..+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE----LAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh----cCCCEEEEcC
Confidence 6899998899999999999999999999997743 34444443221 11101112222 11111 3789999666
Q ss_pred CchhHHHH---HHHHHHcCCcEE
Q 031341 115 DASTVYDN---VKQATAFGMRSV 134 (161)
Q Consensus 115 ~p~~~~~~---~~~al~~g~~vV 134 (161)
+++.+.+. +..+++.|+.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~vi 96 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVI 96 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEE
Confidence 66766664 445568888877
No 56
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.43 E-value=1.9e-06 Score=81.48 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCC-----CCcchhhhhcCCCCCCeeeeCCHHHHHhc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~--------~~eLvavvd~~~-----~g~~~~~~~g~~~~~~i~v~~dl~~~l~~ 100 (161)
++++|+|+| .|.+|+.+++.+.+.. +++++++.++.. .|-+...+.... . +..-..+.+.+++.
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~ 540 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREEL-A-EAGEPFDLDRLIRL 540 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHH-h-hccCCCCHHHHHHH
Confidence 579999999 6999999999987543 678899887431 232322221100 0 00001123322211
Q ss_pred cc-ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCH---HHHHHHHHHhhhcCeee
Q 031341 101 IS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMVS 159 (161)
Q Consensus 101 ~~-~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~---e~~~~L~~~A~~~~Vv~ 159 (161)
+. .....||+||+|.......+...++++|+|||...-+.-. +..++|.++|+++++-|
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~ 603 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKF 603 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeE
Confidence 10 0124689999997766677778999999999988764322 68899999999987644
No 57
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.41 E-value=4.8e-06 Score=66.97 Aligned_cols=103 Identities=9% Similarity=0.054 Sum_probs=67.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
++||+|+| +|+||+.+++.+.+.. +.+-+.++++.. ......+. .++++.+++|.++++. ++|+|+.
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii 72 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL 72 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence 47999999 5999999999987653 344233444321 11222222 1346677888988875 6999998
Q ss_pred ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHH
Q 031341 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSAL 148 (161)
Q Consensus 113 fT~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~L 148 (161)
.++|..+.+.+..... .+..+|.-..|++.+.++.+
T Consensus 73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~ 110 (245)
T PRK07634 73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEER 110 (245)
T ss_pred ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHHH
Confidence 8888877766654332 35556665668888765543
No 58
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=98.38 E-value=4.4e-06 Score=70.97 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=57.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-||+|+|++|.+|.++++.|..+|++||+.+.++... .+ .+.+++++ +.|+++ |+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~-----------~~------~~~~~~~~------~~D~vF-lal 57 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK-----------DA------AERAKLLN------AADVAI-LCL 57 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc-----------Cc------CCHhHhhc------CCCEEE-ECC
Confidence 4899999999999999999999999999999875320 01 13445543 689999 666
Q ss_pred chhH-HHHHHHHHHcCCcEE
Q 031341 116 ASTV-YDNVKQATAFGMRSV 134 (161)
Q Consensus 116 p~~~-~~~~~~al~~g~~vV 134 (161)
|+.. .+.+..+.+.|+.||
T Consensus 58 p~~~s~~~~~~~~~~g~~VI 77 (310)
T TIGR01851 58 PDDAAREAVSLVDNPNTCII 77 (310)
T ss_pred CHHHHHHHHHHHHhCCCEEE
Confidence 6555 677788888899776
No 59
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.38 E-value=3.3e-06 Score=61.75 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=69.7
Q ss_pred eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 37 kV~ViGa~---G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
+|+|+|++ ++.|..+++.+.+ .++++.+| ++.. .+ -.|.+.|.++++ .- ..+|+++-+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~~-----~~------i~G~~~y~sl~e-~p-----~~iDlavv~ 62 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPKG-----GE------ILGIKCYPSLAE-IP-----EPIDLAVVC 62 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STTC-----SE------ETTEE-BSSGGG-CS-----ST-SEEEE-
T ss_pred EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCCc-----eE------ECcEEeeccccC-CC-----CCCCEEEEE
Confidence 68999987 8899999999986 78887765 2221 11 246788999998 33 489999989
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
++|+...+.++.+.+.|+.-|+-.+| +..+++.++|++.++-.
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRV 105 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEE
Confidence 99999999999999999998887777 44556888888876543
No 60
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.37 E-value=2.1e-06 Score=74.95 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=77.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhc--CC-CCCCeeeeCCHHHHHhcccccCCccEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCD--ME-QPLEIPVMSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g--~~-~~~~i~v~~dl~~~l~~~~~~~~~DVV 110 (161)
|+||.|+|+ |++|+.++..+..+.+.++. ++|++... .++.+..+ +. -..++.-.+.+.+++. +.|+|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~V 72 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLV 72 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEE
Confidence 689999996 99999999999988878877 45543211 12211110 00 0122222345666775 56999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
|.+.+|.-....+++|+++|+++|- |+-. .+...++.+.|+++++.
T Consensus 73 In~~p~~~~~~i~ka~i~~gv~yvD-ts~~-~~~~~~~~~~a~~Agit 118 (389)
T COG1748 73 INAAPPFVDLTILKACIKTGVDYVD-TSYY-EEPPWKLDEEAKKAGIT 118 (389)
T ss_pred EEeCCchhhHHHHHHHHHhCCCEEE-cccC-CchhhhhhHHHHHcCeE
Confidence 9999999999999999999999765 4322 22237889999998753
No 61
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=98.37 E-value=3.7e-06 Score=72.23 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=66.1
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCcc
Q 031341 32 PQSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARA 108 (161)
Q Consensus 32 ~~~~ikV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~D 108 (161)
+..++||+|+|++|+.|+++++.|.+ +|.++|..+.+....|+.... .+ .++.+ .+++ +.+. ++|
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~v-~~~~~~~~~------~~D 71 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYTV-EELTEDSFD------GVD 71 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeEE-EeCCHHHHc------CCC
Confidence 34568999999999999999999998 899999988776556665543 11 12333 2322 3443 799
Q ss_pred EEEEccCchhH-HHHHHHHHHcCCcEE
Q 031341 109 VVIDFTDASTV-YDNVKQATAFGMRSV 134 (161)
Q Consensus 109 VVIDfT~p~~~-~~~~~~al~~g~~vV 134 (161)
+|+ |+.|+.. .+++..+.+.|+.||
T Consensus 72 ~vf-~a~p~~~s~~~~~~~~~~g~~VI 97 (344)
T PLN02383 72 IAL-FSAGGSISKKFGPIAVDKGAVVV 97 (344)
T ss_pred EEE-ECCCcHHHHHHHHHHHhCCCEEE
Confidence 999 7767665 678888889999887
No 62
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.36 E-value=4.3e-06 Score=57.98 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=59.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDf 113 (161)
||+++| +|+||..+++.+.+.. ..++.-+.+++. ....++. ..+++.++. +..++++ ..|+||-+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila 68 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELA---KEYGVQATADDNEEAAQ------EADVVILA 68 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence 799999 5999999999998443 277776656543 2333332 134555555 7888886 69999977
Q ss_pred cCchhHHHHHHH--HHHcCCcEEEe
Q 031341 114 TDASTVYDNVKQ--ATAFGMRSVVY 136 (161)
Q Consensus 114 T~p~~~~~~~~~--al~~g~~vVig 136 (161)
..|....+.+.. ....++.+|.-
T Consensus 69 v~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 69 VKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred ECHHHHHHHHHHHhhccCCCEEEEe
Confidence 788877766654 36777777753
No 63
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.34 E-value=4e-06 Score=72.04 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=70.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eCC---HHHHHhcccccCCccEE
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARAVV 110 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~d---l~~~l~~~~~~~~~DVV 110 (161)
|+|+|+ |++|+.+++.|.+..+++-+.+.|++. .++..+........+.. ..| +++++. +.|+|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~------~~dvV 71 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLR------GCDVV 71 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT------TSSEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHh------cCCEE
Confidence 789998 999999999999998884455777542 11112211000112211 133 444553 67999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
|++..|....+.++.|+++|+|.|- +.+-.++..+|.+.|+++++.
T Consensus 72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~ 117 (386)
T PF03435_consen 72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVT 117 (386)
T ss_dssp EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSE
T ss_pred EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCE
Confidence 9999999888999999999999877 434356677888888877653
No 64
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.31 E-value=5.5e-06 Score=78.28 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCCCCCeeeeCCHH---H
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLT---M 96 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~---------~~eLvavvd~~~-----~g~~~~~~~g~~~~~~i~v~~dl~---~ 96 (161)
..++|+++| .|.+|+.+++++.+.. +++++++.++.. .|.+...+..... ......+++ +
T Consensus 457 ~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~e 533 (810)
T PRK09466 457 KRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD--DEAVEWDEESLFL 533 (810)
T ss_pred ceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH--hhcCCccHHHHHH
Confidence 469999999 6999999999987543 578899998532 2223222221000 011112233 3
Q ss_pred HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCC---CHHHHHHHHHHhhhcCee
Q 031341 97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMV 158 (161)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~---~~e~~~~L~~~A~~~~Vv 158 (161)
.+.. .+...+|+||+|.......+...++++|+|||...-.+ ..+..++|.++|+++++-
T Consensus 534 ~i~~--~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~ 596 (810)
T PRK09466 534 WLRA--HPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRH 596 (810)
T ss_pred HHhh--cCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCe
Confidence 3321 01223599999987777777789999999999887643 347888999999998654
No 65
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.31 E-value=4.7e-06 Score=66.61 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=63.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVV 110 (161)
...||+|+|+ |.+|+.+++.+. ...+++++|++|.+.. ..+... .++++ ++++++++.+ .++|++
T Consensus 83 ~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~--~~~~~i-----~g~~v~~~~~l~~li~~----~~iD~V 150 (213)
T PRK05472 83 RTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPE--KIGTKI-----GGIPVYHIDELEEVVKE----NDIEIG 150 (213)
T ss_pred CCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChh--hcCCEe-----CCeEEcCHHHHHHHHHH----CCCCEE
Confidence 3579999995 999999998643 4678999999996421 111111 13333 4567777753 579999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEEE
Q 031341 111 IDFTDASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~~g~~vVi 135 (161)
+.++++..+.+....++++|++.|.
T Consensus 151 iIa~P~~~~~~i~~~l~~~Gi~~il 175 (213)
T PRK05472 151 ILTVPAEAAQEVADRLVEAGIKGIL 175 (213)
T ss_pred EEeCCchhHHHHHHHHHHcCCCEEe
Confidence 9777777777888999999965553
No 66
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=98.29 E-value=7.5e-06 Score=70.12 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=60.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH-HHHhcccccCCccEEEEc
Q 031341 37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF 113 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~--~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~-~~l~~~~~~~~~DVVIDf 113 (161)
||+|+||+|+.|+++++.|.+ +|.++|+.+.+....|+... +.+ .+.. +.+++ +.+. +.|+|+.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~-~~~~~~~~~~------~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELE-VNEAKIESFE------GIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEE-EEeCChHHhc------CCCEEEEC
Confidence 699999999999999999988 79999887777555555543 111 1222 22332 2332 79999955
Q ss_pred cCchhHHHHHHHHHHcCCcEE
Q 031341 114 TDASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vV 134 (161)
+......+.+..+++.|+.||
T Consensus 69 ~g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 69 AGGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred CCHHHHHHHHHHHHHCCCEEE
Confidence 555566788899999998766
No 67
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.28 E-value=7.7e-06 Score=70.47 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=63.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV 109 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e---Lvavvd~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DV 109 (161)
+.+||+|+||||..|+++++.|.++|+++ |..+.+....|+.+. +.+ .++.+. .+.++ +. +.|+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~-~~------~~Di 71 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINS-FE------GVDI 71 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHH-hc------CCCE
Confidence 34899999999999999999999899999 666666555666652 211 134443 23333 33 6999
Q ss_pred EEEccCchhH-HHHHHHHHHcCCcEE
Q 031341 110 VIDFTDASTV-YDNVKQATAFGMRSV 134 (161)
Q Consensus 110 VIDfT~p~~~-~~~~~~al~~g~~vV 134 (161)
++ |+.|+.. .+.+..+.++|..||
T Consensus 72 vf-~a~~~~~s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 72 AF-FSAGGEVSRQFVNQAVSSGAIVI 96 (347)
T ss_pred EE-ECCChHHHHHHHHHHHHCCCEEE
Confidence 99 7666555 678888889998877
No 68
>PLN02700 homoserine dehydrogenase family protein
Probab=98.27 E-value=6.4e-06 Score=71.68 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=71.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCC-----C----Ccchhhhhc---CC-CCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS-----V----GEDIGMVCD---ME-QPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~--------~~eLvavvd~~~-----~----g~~~~~~~g---~~-~~~~i~v~-- 91 (161)
.++|+|+| .|.+|+.+++++.+.. +++++++.++.. . |-+...+.. .. +..+..-+
T Consensus 3 ~i~i~liG-~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T PLN02700 3 KIPVLLLG-CGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA 81 (377)
T ss_pred EEEEEEEe-cChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence 48999999 6999999999987643 367889988531 1 333222211 00 01111000
Q ss_pred -----------------CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031341 92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (161)
Q Consensus 92 -----------------~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~ 154 (161)
.+..+.+.. ...+|+||+|......++...++++|+|||...-+......+++.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~ 157 (377)
T PLN02700 82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAH 157 (377)
T ss_pred ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHc
Confidence 122232321 35699999998777789999999999999987654433344455555543
No 69
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.25 E-value=1.2e-05 Score=65.69 Aligned_cols=101 Identities=10% Similarity=0.034 Sum_probs=65.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
|+||+|+| +|.||+.+++.+.+.. ....+.+++++. .....+. ..+++.++.+.++++. .+|+||.+
T Consensus 2 mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~~------~advVil~ 69 (267)
T PRK11880 2 MKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAAQ------EADVVVLA 69 (267)
T ss_pred CCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHHh------cCCEEEEE
Confidence 68999999 5999999999987542 123455677542 1222221 1235666778888774 78999978
Q ss_pred cCchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHH
Q 031341 114 TDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSA 147 (161)
Q Consensus 114 T~p~~~~~~~~~al~~-g~~vVigttg~~~e~~~~ 147 (161)
+.|....+.++....+ +..+|.-+.|.+.++++.
T Consensus 70 v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~~ 104 (267)
T PRK11880 70 VKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLER 104 (267)
T ss_pred cCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHHH
Confidence 8777776766655443 455565556777666553
No 70
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=98.24 E-value=5.6e-06 Score=71.00 Aligned_cols=95 Identities=23% Similarity=0.140 Sum_probs=67.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh------hcCCCCCCeeee--C
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV------CDMEQPLEIPVM--S 92 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--------------~~g~~~~~~------~g~~~~~~i~v~--~ 92 (161)
++||+|.|+ |||||.+++.+.+.++++|+++.|+. .-|+--.++ +-+. ...+.++ .
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~-g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVIN-GKRIRTTQNK 79 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEEC-CEEEEEEecC
Confidence 389999996 99999999999989999999999831 012110111 1111 1123443 3
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEe
Q 031341 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 136 (161)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVig 136 (161)
++++... .++|+|+++|-.....+.+...++.|...|+=
T Consensus 80 ~~~~~~w-----~gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 80 AIADTDW-----SGCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred ChhhCCc-----cCCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 6777655 38999998888888889999999999766643
No 71
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.23 E-value=1.4e-05 Score=66.27 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=68.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
++||+|+| +|.||+.+++.+. ..++++. ++|++. .+...+. ..++.+++++++++. ++|+||.+.
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLL-KAGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITML 66 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEeC
Confidence 46899999 6999999999987 5678876 567542 1222222 345666788988875 689999666
Q ss_pred CchhHHHHH-------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341 115 DASTVYDNV-------KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (161)
Q Consensus 115 ~p~~~~~~~-------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~ 156 (161)
++....+.+ ...+..|.-+| -++..++...++|.+..++.+
T Consensus 67 p~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~g 114 (296)
T PRK11559 67 PNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAKG 114 (296)
T ss_pred CCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHcC
Confidence 544443333 22334455444 344456777777777766543
No 72
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.23 E-value=8e-06 Score=70.91 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=58.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV 109 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~e---Lvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DV 109 (161)
|+||+|+||||..|+++++.+++++++. ++...+. ..|.....+.| ....+.+ +.++ +. ++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g----~~~~v~~~~~~~~-~~------~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGG----KEGTLQDAFDIDA-LK------KLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCC----CcceEEecCChhH-hc------CCCE
Confidence 6899999999999999999888899998 7774443 33333322222 1233333 2333 43 6999
Q ss_pred EEEccCchhH-HHHHHHHHHcCCc
Q 031341 110 VIDFTDASTV-YDNVKQATAFGMR 132 (161)
Q Consensus 110 VIDfT~p~~~-~~~~~~al~~g~~ 132 (161)
++ |+.|+.. .+.+..+.++|++
T Consensus 69 vf-~a~~~~~s~~~~~~~~~aG~~ 91 (369)
T PRK06598 69 II-TCQGGDYTNEVYPKLRAAGWQ 91 (369)
T ss_pred EE-ECCCHHHHHHHHHHHHhCCCC
Confidence 99 7767666 5788888899975
No 73
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.21 E-value=8.7e-06 Score=68.68 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=65.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-------hcCCCCCCeeeeCCHHHHHhcccccCC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKA 106 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~-------~g~~~~~~i~v~~dl~~~l~~~~~~~~ 106 (161)
+|||+|+| .|.||..++..+. ..+.++. +++++.. ...+... .|......+..++++++++. .
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~-~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~------~ 74 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAA-SKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA------G 74 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHH-HCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc------C
Confidence 57999999 5999999999987 4577755 5564311 0111110 01100112456678888774 7
Q ss_pred ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHH--HHHHHHHhh
Q 031341 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCD 153 (161)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~--~~~L~~~A~ 153 (161)
+|+||-+..+. ..+.+...++.+..+|.-++|+++++ .+.+.+...
T Consensus 75 aD~Vi~~v~~~-~~~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~ 122 (328)
T PRK14618 75 ADFAVVAVPSK-ALRETLAGLPRALGYVSCAKGLAPDGGRLSELARVLE 122 (328)
T ss_pred CCEEEEECchH-HHHHHHHhcCcCCEEEEEeeccccCCCccchHHHHHH
Confidence 89998555444 44444455667777777777876443 445555443
No 74
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=98.20 E-value=6.9e-06 Score=70.54 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=64.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchh-hh-------hcCCCCCCeeee-
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIG-MV-------CDMEQPLEIPVM- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--------------~g~~~~-~~-------~g~~~~~~i~v~- 91 (161)
++||+|+| .|+|||.+++.+.+.++++|+++.|+.. -|+-.+ ++ +-+. ...+.++
T Consensus 5 ~lrVaI~G-~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~-g~~i~v~~ 82 (338)
T PLN02358 5 KIRIGING-FGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVFG 82 (338)
T ss_pred ceEEEEEe-ecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEEC-CEEEEEEE
Confidence 69999999 5999999999998889999999998421 121000 00 0000 1123332
Q ss_pred -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi 135 (161)
.|++++... +.++|+|+++|......+.+...+++|...|+
T Consensus 83 ~~~p~~~~w~---~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi 124 (338)
T PLN02358 83 IRNPEDIPWG---EAGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124 (338)
T ss_pred cCCcccCccc---ccCCCEEEEcccchhhHHHHHHHHHCCCEEEE
Confidence 334444221 24899999989888888999999999975554
No 75
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.19 E-value=1.5e-05 Score=65.02 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=66.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEE--EEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEV--AGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eL--vavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
|||+++| +|+||+.+++.+.+. +.++ +.+.+++. .+..++.. .. ++.++++.+++.. ++|+|+.
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~-g~~~~~i~v~~r~~--~~~~~l~~---~~~~~~~~~~~~~~~~------~aDvVil 67 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTS-PADVSEIIVSPRNA--QIAARLAE---RFPKVRIAKDNQAVVD------RSDVVFL 67 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhC-CCChheEEEECCCH--HHHHHHHH---HcCCceEeCCHHHHHH------hCCEEEE
Confidence 4899999 599999999999854 3333 45666532 22222221 22 4567788888875 6899997
Q ss_pred ccCchhHHHHHHHH-HHcCCcEEEeCCCCCHHHHHHHH
Q 031341 113 FTDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALS 149 (161)
Q Consensus 113 fT~p~~~~~~~~~a-l~~g~~vVigttg~~~e~~~~L~ 149 (161)
.+.|+...+.+... +..+..+|.-..|.+.++++.+.
T Consensus 68 av~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~~ 105 (258)
T PRK06476 68 AVRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEWI 105 (258)
T ss_pred EeCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHh
Confidence 88777666665432 34566677655677777766554
No 76
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.17 E-value=3.7e-05 Score=64.35 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=68.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
+||+++| .|+||+.+++.+. ..+++|+ ++|++. ....++. ..+...+.+++++..+ ...+|+|+-+.+
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~-~~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~---~~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLR-EDGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSK---LEAPRTIWVMVP 68 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHH-hCCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHh---CCCCCEEEEEec
Confidence 4899999 6999999999997 4678877 688643 1222221 3466778899988752 013689886665
Q ss_pred chhH-HHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 116 ASTV-YDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 116 p~~~-~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
++.. .+.+... ++.| .+|+-++..++++..++.+..++.++
T Consensus 69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~ 113 (299)
T PRK12490 69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGI 113 (299)
T ss_pred CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCC
Confidence 5523 3333332 2333 35665555556666667666665554
No 77
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.15 E-value=3.8e-05 Score=63.49 Aligned_cols=111 Identities=8% Similarity=0.102 Sum_probs=69.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~---~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
+||+++| +|.||+.+++.+.+.. ..++ .+++++. ......+. .++++.++.+..++.. ++|+||-
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v-~v~~r~~-~~~~~~l~---~~~g~~~~~~~~e~~~------~aDvVil 71 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQI-TVSNRSN-ETRLQELH---QKYGVKGTHNKKELLT------DANILFL 71 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceE-EEECCCC-HHHHHHHH---HhcCceEeCCHHHHHh------cCCEEEE
Confidence 6999999 5999999999998653 2444 4566532 11222222 1346667788888764 6899997
Q ss_pred ccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341 113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (161)
Q Consensus 113 fT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (161)
...|....+.+... +..+..+|.-..|.+.++++++.. ...||+.+
T Consensus 72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~--~~~~v~r~ 120 (279)
T PRK07679 72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQ--KDVPIIRA 120 (279)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCCeEEEE
Confidence 77777766655433 334555555457888777665431 23466653
No 78
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=98.15 E-value=1.6e-05 Score=69.29 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=74.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cc----------------hhhhhcCCCCCCeeee---
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---ED----------------IGMVCDMEQPLEIPVM--- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g---~~----------------~~~~~g~~~~~~i~v~--- 91 (161)
|-||+|+|+||.+|+..++.+.+.| .+++++++...... +. ..++.......++.++
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 4689999999999999999998765 79999998421100 00 0000000001122233
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (161)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~ 156 (161)
+.+.++++ ..++|+|+....-..+.+.+..|+++|++|.+..-..-......+.+++++.+
T Consensus 81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g 141 (385)
T PRK05447 81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSG 141 (385)
T ss_pred hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcC
Confidence 23344444 36789999766655667888999999999998543222344556777777654
No 79
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.14 E-value=3.4e-05 Score=63.98 Aligned_cols=102 Identities=10% Similarity=0.056 Sum_probs=67.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~---~eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVV 110 (161)
|+||+|+| +|.||+.+++.+.+... .++..+..+.. .....+.. .. ++.++.+.++++. ++|+|
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~--~~~~~l~~---~~~~~~~~~~~~e~~~------~aDvV 68 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILYSSSKN--EHFNQLYD---KYPTVELADNEAEIFT------KCDHS 68 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEEeCCcH--HHHHHHHH---HcCCeEEeCCHHHHHh------hCCEE
Confidence 57899999 59999999999885532 56665443321 11111111 12 3455678887764 78999
Q ss_pred EEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHH
Q 031341 111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSAL 148 (161)
Q Consensus 111 IDfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L 148 (161)
|.++.|....+.+... +..++.+|+-..|.+.++++.+
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~ 109 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEI 109 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH
Confidence 9777777776666544 4567788887778888776554
No 80
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.14 E-value=2.8e-06 Score=63.43 Aligned_cols=92 Identities=22% Similarity=0.202 Sum_probs=53.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
..+||+|+|+ ||+|..+.+.+. ..+++++++++++... ..+..+. .+.+ +.++++++. ++|+++
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~-~ag~~v~~v~srs~~sa~~a~~~~-----~~~~-~~~~~~~~~------~aDlv~- 73 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALA-RAGHEVVGVYSRSPASAERAAAFI-----GAGA-ILDLEEILR------DADLVF- 73 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHH-HTTSEEEEESSCHH-HHHHHHC-------TT------TTGGGC------C-SEEE-
T ss_pred CccEEEEECC-CHHHHHHHHHHH-HCCCeEEEEEeCCccccccccccc-----cccc-ccccccccc------cCCEEE-
Confidence 3599999996 999999999987 6789999998864321 1222211 1223 346677664 799999
Q ss_pred ccCchhHHHHHHHHHHcC-----CcEEEeCCCC
Q 031341 113 FTDASTVYDNVKQATAFG-----MRSVVYVPHI 140 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g-----~~vVigttg~ 140 (161)
.|.|+...+.+-..+... =.+|+.|.|-
T Consensus 74 iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 74 IAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp E-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred EEechHHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence 777887765444444332 3578888764
No 81
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.14 E-value=3e-05 Score=63.24 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=64.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~----eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVI 111 (161)
|||+++| +|.||..+++.+.+. ++ ++....+++. .....+. +.|+.+.++.+++.. +.|+||
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi 66 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVVK------SSDVII 66 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHHh------cCCEEE
Confidence 6899999 699999999999854 44 6553326532 1222221 357777888888774 689999
Q ss_pred EccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHH
Q 031341 112 DFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSAL 148 (161)
Q Consensus 112 DfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L 148 (161)
....|....+.+... +..+..+|+-+.|.+.++.+++
T Consensus 67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~ 106 (266)
T PLN02688 67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEW 106 (266)
T ss_pred EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHH
Confidence 887777666665433 3345555554567776665543
No 82
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.11 E-value=6.2e-05 Score=62.95 Aligned_cols=111 Identities=12% Similarity=0.048 Sum_probs=68.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
|||+++| .|.||+.+++.+. ..+.++. ++|++. .....+. +.++.++++++++.+. ..++|+|+-+.+
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~-~~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~---~~~~dvvi~~v~ 68 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLL-RGGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAK---LPAPRVVWLMVP 68 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHH-HCCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhh---cCCCCEEEEEec
Confidence 4899999 6999999999997 4578865 577643 1222222 3466778899988752 014788885554
Q ss_pred ch-hHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 116 AS-TVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 116 p~-~~~~~~---~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
+. ...+.+ ...++.|.-+|..+| .+++...++.+.+++.++.|
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~ivid~st-~~~~~~~~~~~~~~~~g~~~ 115 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGDIVIDGGN-SYYKDDIRRAELLAEKGIHF 115 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCCEEEeCCC-CChhHHHHHHHHHHHcCCEE
Confidence 43 223333 333444544444444 44556666777777766554
No 83
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.08 E-value=1.9e-05 Score=67.80 Aligned_cols=98 Identities=20% Similarity=0.188 Sum_probs=67.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh------hcCCCCCCeeee--C
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV------CDMEQPLEIPVM--S 92 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--------------~~g~~~~~~------~g~~~~~~i~v~--~ 92 (161)
++||+|.| .||+||.+.|.+.+.+++++|++-|+. .-|+--+++ +-+. ...++++ .
T Consensus 2 ~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~-g~~i~~~~~~ 79 (337)
T PTZ00023 2 VVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIG-SKKVHVFFEK 79 (337)
T ss_pred ceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEEC-CeEEEEEeCC
Confidence 37999999 699999999998878999999997721 011100000 0000 1224443 5
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
|++++-.. +.++|+|+++|......+.+..+++.|...|+=+
T Consensus 80 dp~~lpW~---~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS 121 (337)
T PTZ00023 80 DPAAIPWG---KNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS 121 (337)
T ss_pred ChhhCCcc---ccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence 56666542 4689999988888888899999999997777543
No 84
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=98.06 E-value=1.8e-05 Score=63.02 Aligned_cols=88 Identities=24% Similarity=0.378 Sum_probs=66.1
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCc
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKAR 107 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~--~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~ 107 (161)
..+.+|+|+|+ |++|++++..-- ...+++++++.|.+ ..|.. -.+++++ +++++.+.+ .++
T Consensus 82 ~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~---------~~~v~V~~~d~le~~v~~----~dv 147 (211)
T COG2344 82 DKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK---------IGDVPVYDLDDLEKFVKK----NDV 147 (211)
T ss_pred CcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc---------cCCeeeechHHHHHHHHh----cCc
Confidence 35799999996 999999988655 37899999999953 23322 2356775 677887764 688
Q ss_pred cEEEEccCchhHH-HHHHHHHHcCCcEEE
Q 031341 108 AVVIDFTDASTVY-DNVKQATAFGMRSVV 135 (161)
Q Consensus 108 DVVIDfT~p~~~~-~~~~~al~~g~~vVi 135 (161)
|+.| .|.|..++ +.+....++|+.-|.
T Consensus 148 ~iai-LtVPa~~AQ~vad~Lv~aGVkGIl 175 (211)
T COG2344 148 EIAI-LTVPAEHAQEVADRLVKAGVKGIL 175 (211)
T ss_pred cEEE-EEccHHHHHHHHHHHHHcCCceEE
Confidence 8888 66676665 677899999987663
No 85
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.04 E-value=4.6e-05 Score=63.54 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=75.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
|+||+++|+ |+||+.++.-+.+...+ +-+-+.++... ....+. ..+++..+++.+++.. ..|+|+.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e--~~~~l~---~~~g~~~~~~~~~~~~------~advv~L 68 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEE--KRAALA---AEYGVVTTTDNQEAVE------EADVVFL 68 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHH--HHHHHH---HHcCCcccCcHHHHHh------hCCEEEE
Confidence 579999995 99999999999977632 34445655321 111222 2456655677777764 7999998
Q ss_pred ccCchhHHHHHHHHH--HcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 113 fT~p~~~~~~~~~al--~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
.--|....+.+.... ..++.+|+-..|.+.++++.+.. ..+|+
T Consensus 69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~---~~~vv 113 (266)
T COG0345 69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLLG---GLRVV 113 (266)
T ss_pred EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcC---CCceE
Confidence 888988887777664 47888998888988777554443 44544
No 86
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=98.01 E-value=2.9e-05 Score=66.37 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=63.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccc------hhhhhcCCCCCCeeee--C
Q 031341 37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GED------IGMVCDMEQPLEIPVM--S 92 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~---~~~eLvavvd~~~~-------------g~~------~~~~~g~~~~~~i~v~--~ 92 (161)
||+|+|+ |++||.+++.+.+. ++++++++.|.... |+- .+..+-+. ...+.++ .
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN-GDCIRVLHSP 78 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC-CeEEEEEEcC
Confidence 6999996 99999999998865 46999999883211 000 00000000 1123343 3
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031341 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP 138 (161)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~-vVigtt 138 (161)
+++++... +.++|+|+++|.+....+.+..++++|.. |++..+
T Consensus 79 ~p~~~~w~---~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 79 TPEALPWR---ALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred Chhhcccc---ccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence 66665431 24899999999888889999999999944 444433
No 87
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=98.00 E-value=9.1e-05 Score=65.62 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=80.0
Q ss_pred CeeEEEEcCC---CHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341 35 NIKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (161)
Q Consensus 35 ~ikV~ViGa~---G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV 109 (161)
+=+|+|+|++ |++|+.+++.+. ..++ ++ ..+++.. .+ -.|+++|.+++++-. .+|+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~-~~gf~g~v-~~Vnp~~-----~~------i~G~~~~~sl~~lp~------~~Dl 67 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLI-EGGYKGKI-YPVNPKA-----GE------ILGVKAYPSVLEIPD------PVDL 67 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHH-hCCCCCcE-EEECCCC-----Cc------cCCccccCCHHHCCC------CCCE
Confidence 3479999987 789999999997 4455 44 3444321 11 247889999999853 7999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEE-EeCCCCCH------HHHHHHHHHhhhcCeeecC
Q 031341 110 VIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~g~~vV-igttg~~~------e~~~~L~~~A~~~~Vv~tg 161 (161)
++.+++|+...+.++.|.+.|++.+ +-+.||.+ +..++|.++|++.++-..|
T Consensus 68 avi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 68 AVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 9989999999999999999998755 54656643 2346899999998765443
No 88
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.99 E-value=7.6e-05 Score=62.41 Aligned_cols=107 Identities=9% Similarity=0.107 Sum_probs=66.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|.||+++| .|.||..+++.+. ..++++ .++|++. ....++. ..++....+.+++.. ..|+||-+.
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~-~~G~~V-~v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLL-KQGHQL-QVFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML 65 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHH-HCCCeE-EEEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence 35899999 6999999999997 456776 4677543 2222222 235556678888775 689998555
Q ss_pred CchhHHHHHH-------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 115 ~p~~~~~~~~-------~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
+++...+.+. ..+..|.-+ +-++..++++.++|.+..++.++
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~lv-id~sT~~p~~~~~l~~~l~~~g~ 114 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDALV-IDMSTIHPLQTDKLIADMQAKGF 114 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcCC
Confidence 5544333331 123344444 44444667777778777666543
No 89
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.99 E-value=3.5e-05 Score=66.03 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=66.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~-~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
++||+|+|+||..|+.+++.|.+ ++.++.+.++.+ ...|+...++.+. .+.+-++..+.... .+.|+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~----~~~v~~~~~~~~~~----~~~Divf- 71 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK----SIGVPEDAADEFVF----SDVDIVF- 71 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc----cccCcccccccccc----ccCCEEE-
Confidence 57999999999999999999998 888886666664 4567664454432 23333332232221 4789988
Q ss_pred ccCch-hHHHHHHHHHHcCCcEEEeC
Q 031341 113 FTDAS-TVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 113 fT~p~-~~~~~~~~al~~g~~vVigt 137 (161)
|+.+. ...++..++.++|..||--+
T Consensus 72 ~~ag~~~s~~~~p~~~~~G~~VIdns 97 (334)
T COG0136 72 FAAGGSVSKEVEPKAAEAGCVVIDNS 97 (334)
T ss_pred EeCchHHHHHHHHHHHHcCCEEEeCC
Confidence 87764 44789999999998877543
No 90
>PRK07680 late competence protein ComER; Validated
Probab=97.99 E-value=7.3e-05 Score=61.58 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=63.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCC-CeeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~-~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
|||+|+| .|.||+.+++.+.+...+ +-+.+++++. .....+.. .+ ++.++.+.++++. ++|+||.
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~---~~~g~~~~~~~~~~~~------~aDiVil 68 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKE---RYPGIHVAKTIEEVIS------QSDLIFI 68 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHH---HcCCeEEECCHHHHHH------hCCEEEE
Confidence 4799999 599999999998855322 3456777643 12222221 22 5677788888774 7899997
Q ss_pred ccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHH
Q 031341 113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSA 147 (161)
Q Consensus 113 fT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~ 147 (161)
++.|....+.+... +..+..+|.-+.|.+.++++.
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET 106 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 77777666655543 334555554445676555444
No 91
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.97 E-value=4.4e-05 Score=65.42 Aligned_cols=97 Identities=26% Similarity=0.230 Sum_probs=66.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee--CCH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SDL 94 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~--~dl 94 (161)
+||+|.| .||+||.+.|.+.+.+++|+|++-|.. .-|+--+++ +-+. ...+.++ .++
T Consensus 3 ~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~-g~~I~v~~~~dp 80 (331)
T PRK15425 3 IKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVN-GKKIRVTAERDP 80 (331)
T ss_pred eEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEEC-CeEEEEEEcCCh
Confidence 7999999 699999999998878999999998731 011110111 0010 1123443 366
Q ss_pred HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
+++... +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 81 ~~~~w~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (331)
T PRK15425 81 ANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 120 (331)
T ss_pred hhCccc---ccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence 665431 2489999988888888889999999997777544
No 92
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=97.97 E-value=3e-05 Score=68.60 Aligned_cols=99 Identities=22% Similarity=0.185 Sum_probs=64.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh-------hcCCCCCCeeee
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV-------CDMEQPLEIPVM 91 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~~~~~~-------~g~~~~~~i~v~ 91 (161)
.++||+|.| .||+||.+.|.+.+. +++|+|++-|.. .-|+--.++ +-+. ...+.++
T Consensus 74 ~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~-Gk~I~V~ 151 (442)
T PLN02237 74 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVD-GKPIKVV 151 (442)
T ss_pred ceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEEC-CEEEEEE
Confidence 459999999 699999999987755 789999998731 011100010 0010 1123333
Q ss_pred C--CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 92 S--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 ~--dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
. +++++-.. +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 152 ~~~dp~~l~W~---~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS 196 (442)
T PLN02237 152 SNRDPLKLPWA---ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 196 (442)
T ss_pred EcCCchhCChh---hcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC
Confidence 2 33344321 2489999998988888899999999997776544
No 93
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.96 E-value=3.3e-05 Score=67.65 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=65.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCc---c----hhhhhcCCCCCCeeee-
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGE---D----IGMVCDMEQPLEIPVM- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~---~----~~~~~g~~~~~~i~v~- 91 (161)
++||+|+|+ |++||.+++.+.+. +.++|+++=|.. ..|+ + .++.+-+. ...+.++
T Consensus 60 ~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~-gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD-GKVIKVVS 137 (395)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC-CEEEEEEE
Confidence 389999996 99999999998866 789999886521 0010 0 01111111 1234444
Q ss_pred -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
.|++++-.. +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 138 ~~dp~~~~w~---~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS 181 (395)
T PLN03096 138 DRNPLNLPWG---ELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 181 (395)
T ss_pred cCCccccccc---ccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence 346665431 2489999999988888889999999997766543
No 94
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.96 E-value=3e-05 Score=66.66 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=65.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~-- 91 (161)
|+||+|.| .||+||.+.|.+.+. +++|+|++-|.. .-|+--.++ +-+. ...+.++
T Consensus 1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~I~v~~~ 78 (337)
T PRK07403 1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVN-GKTIKCVSD 78 (337)
T ss_pred CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEEC-CEEEEEEEc
Confidence 78999999 699999999998766 689999998831 011100000 0010 1224444
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
.|++++-.. +.++|+|+++|......+.+...++.|...|+=+
T Consensus 79 ~dp~~~~W~---~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS 121 (337)
T PRK07403 79 RNPLNLPWK---EWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT 121 (337)
T ss_pred CCcccCChh---hcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence 344555331 2489999988888888899999999997766533
No 95
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.93 E-value=5.6e-05 Score=65.08 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=66.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee--CC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SD 93 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------------~~g~~~~~~------~g~~~~~~i~v~--~d 93 (161)
++||+|.| .||+||.+.|.+.+.+++|++++-|.. .-|+--.++ +-+. ...+.++ .|
T Consensus 2 ~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~-g~~I~v~~~~d 79 (343)
T PRK07729 2 KTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVD-GKKIRLLNNRD 79 (343)
T ss_pred ceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEEcCC
Confidence 37999999 699999999998878999999998731 011100011 0010 1123343 46
Q ss_pred HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
++++-.. +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 80 p~~~~W~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (343)
T PRK07729 80 PKELPWT---DLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT 120 (343)
T ss_pred hhhCccc---ccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence 6666442 2489999988888888899999999997776544
No 96
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=97.92 E-value=3.6e-05 Score=66.10 Aligned_cols=98 Identities=22% Similarity=0.243 Sum_probs=65.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCc---c---hhhhhcCCCCCCeeee-
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGE---D---IGMVCDMEQPLEIPVM- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~---~~~eLvavvd~~-------------~~g~---~---~~~~~g~~~~~~i~v~- 91 (161)
++||+|+|+ |++||.+.+.+.+. ++++++++-|.. .-|+ + .+..+-+. ...+.++
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~-g~~i~v~~ 78 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVG-DDAIRLLH 78 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEE
Confidence 589999996 99999999998864 589999887521 0011 0 01111111 1234444
Q ss_pred -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
.+++++... +.++|+|+++|......+.+..++++|...|+=+
T Consensus 79 ~~~p~~~~w~---~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iS 122 (336)
T PRK13535 79 ERDIASLPWR---ELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFS 122 (336)
T ss_pred cCCcccCccc---ccCCCEEEEccchhhhHHHHHHHHHcCCEEEEec
Confidence 356665431 2489999988888888899999999997666544
No 97
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.92 E-value=6.9e-05 Score=62.42 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=56.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh-------hcCCCCCCeeeeCCHHHHHhcccccCC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKA 106 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~-------~g~~~~~~i~v~~dl~~~l~~~~~~~~ 106 (161)
|+||+|+| .|.||..++..+. ..+.++ .++++...- ..+... .+...+.++...+++++++. +
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~-~~g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 71 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLA-RNGHDV-TLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA------D 71 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-hCCCEE-EEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh------C
Confidence 67999999 5999999999987 457775 566653110 001100 00000124556778887774 7
Q ss_pred ccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHH
Q 031341 107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE 143 (161)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~a---l~~g~~vVigttg~~~e 143 (161)
+|+||-++.+....+.+... +..+..+|.-+.|++.+
T Consensus 72 ~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~ 111 (325)
T PRK00094 72 ADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG 111 (325)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC
Confidence 89999565554333333332 33455555444355543
No 98
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=7.3e-05 Score=61.87 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=56.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc------------chhhhhcCCCCCC-----ee-------ee
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE------------DIGMVCDMEQPLE-----IP-------VM 91 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~------------~~~~~~g~~~~~~-----i~-------v~ 91 (161)
|+++++| .||||..+++.+. ..+.++| ++|.+.... .+.++.....+.. +| +.
T Consensus 1 M~iGmiG-LGrMG~n~v~rl~-~~ghdvV-~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi 77 (300)
T COG1023 1 MQIGMIG-LGRMGANLVRRLL-DGGHDVV-GYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI 77 (300)
T ss_pred Ccceeec-cchhhHHHHHHHH-hCCCeEE-EEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence 5899999 7999999999997 6788888 456321100 1111111000000 01 11
Q ss_pred CCHHHHHhcccccCCccEEEEccCc--hhHHHHHHHHHHcCCcEE-EeCC
Q 031341 92 SDLTMVLGSISQSKARAVVIDFTDA--STVYDNVKQATAFGMRSV-VYVP 138 (161)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p--~~~~~~~~~al~~g~~vV-igtt 138 (161)
+++...| ..-|+|||-.+. ....+..+.+.++|+|.+ +||.
T Consensus 78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTS 121 (300)
T COG1023 78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTS 121 (300)
T ss_pred HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCC
Confidence 2222233 357899997644 455677778899999998 7775
No 99
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=97.90 E-value=0.0002 Score=61.51 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=81.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHH--hc--------------------CCcEEEEEEec--CCCCcchhhhhcCCCCC-----
Q 031341 36 IKVIINGAVKEIGRAAVIAVT--KA--------------------RGMEVAGAIDS--HSVGEDIGMVCDMEQPL----- 86 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~--~~--------------------~~~eLvavvd~--~~~g~~~~~~~g~~~~~----- 86 (161)
|||+|+|. |+-.+.+++-+. +. .|+|+|+..|. .+.|+++++..-.. +.
T Consensus 1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~-pN~t~~~ 78 (351)
T TIGR03450 1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFAS-ENNTIKI 78 (351)
T ss_pred CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcC-CCCceee
Confidence 69999995 999999988653 21 16799999994 45788877654221 22
Q ss_pred ------Ceeee-----C------------------CHHHHHhcccccCCccEEEEccC---chhHHHHHHHHHHcCCcEE
Q 031341 87 ------EIPVM-----S------------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 87 ------~i~v~-----~------------------dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~g~~vV 134 (161)
|+.|. + |+-+.|. +.++||+|.+-+ -.+..-++.+|++.|++.|
T Consensus 79 ~~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk----~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afV 154 (351)
T TIGR03450 79 ADVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALK----DAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFV 154 (351)
T ss_pred eccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHH----hcCCCEEEECCccchHHHHHHHHHHHHHcCCceE
Confidence 22221 1 3334454 478999997653 2344568889999999999
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 135 VYVPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 135 igttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
-++|-+.. ...++.++++++++...|
T Consensus 155 N~~P~~ia-~~p~~a~~f~e~glPi~G 180 (351)
T TIGR03450 155 NALPVFIA-SDPEWAKKFTDAGVPIVG 180 (351)
T ss_pred eccCcccc-CCHHHHHHHHHCCCCEec
Confidence 99986654 345688888888776655
No 100
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.90 E-value=0.00019 Score=58.94 Aligned_cols=94 Identities=7% Similarity=0.053 Sum_probs=61.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~---eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
|||+++| .|.||..+++.+.+...+ ++. +++++.. ..++....+..++.. ++|+||-
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~~------------~~~~~~~~~~~~~~~------~~D~Vil 63 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIGKENIY-YHTPSKK------------NTPFVYLQSNEELAK------TCDIIVL 63 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCCcceEE-EECCChh------------cCCeEEeCChHHHHH------hCCEEEE
Confidence 6999999 599999999999865422 233 3443221 112233456667664 6899998
Q ss_pred ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHH
Q 031341 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALS 149 (161)
Q Consensus 113 fT~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~L~ 149 (161)
++.|....+.+..... .+..+|+-..|.+.++++.+.
T Consensus 64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~ 102 (260)
T PTZ00431 64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMV 102 (260)
T ss_pred EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHc
Confidence 8888777666654432 245667767788877766553
No 101
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.88 E-value=0.00014 Score=60.33 Aligned_cols=101 Identities=9% Similarity=0.054 Sum_probs=66.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~---~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
+||+++| +|+||..+++.+.+.. ..++ -+++++. .....+. +++++.++++.++++. ++|+||-
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I-~v~~r~~--~~~~~l~---~~~g~~~~~~~~e~~~------~aDiIiL 69 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQI-ICSDLNV--SNLKNAS---DKYGITITTNNNEVAN------SADILIL 69 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCceE-EEECCCH--HHHHHHH---HhcCcEEeCCcHHHHh------hCCEEEE
Confidence 5899999 5999999999998543 2244 4566532 1222222 1246666778888764 6899997
Q ss_pred ccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHH
Q 031341 113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALS 149 (161)
Q Consensus 113 fT~p~~~~~~~~~a---l~~g~~vVigttg~~~e~~~~L~ 149 (161)
+..|....+.+... ++.+.-+|+-..|.+.++++++.
T Consensus 70 avkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l 109 (272)
T PRK12491 70 SIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEF 109 (272)
T ss_pred EeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhc
Confidence 77887766655443 34455566666788887766543
No 102
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.88 E-value=0.0002 Score=59.97 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=67.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
|||+++| .|+||..+++.+. ..++++. ++++... ...+. ..+.....+..++.. .+|+||-+.+
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~-~~G~~v~-v~~~~~~---~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLA-RAGHQLH-VTTIGPV---ADELL----SLGAVSVETARQVTE------ASDIIFIMVP 64 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHH-HCCCeEE-EEeCCHh---HHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence 4899999 6999999999997 5578776 5665321 12222 345666778888764 7899884443
Q ss_pred ch-hHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 116 AS-TVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 116 p~-~~~~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
.. ...+.+ ...+..|+ +|+-++..++++.+++.+.+++.++-
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g~-ivvd~sT~~p~~~~~~~~~~~~~G~~ 113 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKGK-TIVDMSSISPIETKRFARQVNELGGD 113 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 22 223322 11123343 55556667888888888887776653
No 103
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.88 E-value=0.00026 Score=59.24 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=56.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
|||+++| .|+||..+++.+. ..++++.. +|++. .....+. +.+...+.+++++.+. ...+|+|+-+.+
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~-~~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~---~~~~dvIi~~vp 68 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLA-KRGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQR---LSAPRVVWVMVP 68 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhh---cCCCCEEEEEcC
Confidence 4899999 6999999999987 46888764 77643 1222222 2344445677776532 136899885555
Q ss_pred chhHHHHH---HHHHHcCCcEEEeCCCC
Q 031341 116 ASTVYDNV---KQATAFGMRSVVYVPHI 140 (161)
Q Consensus 116 p~~~~~~~---~~al~~g~~vVigttg~ 140 (161)
+..+.+.+ ...++.|.-+|-.+|+.
T Consensus 69 ~~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 69 HGIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred chHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 54333333 33445665555555544
No 104
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.86 E-value=0.00025 Score=58.75 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=63.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (161)
||+|+| +|.||+.+++.+. ..++++. ++|++. .....+. ..+....+++++++. +.|+||...+.
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~-~~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLA-KAGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD 65 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence 699999 6999999999987 4578876 667542 2222221 335555678888875 78999955543
Q ss_pred hhHHHHHH-------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341 117 STVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (161)
Q Consensus 117 ~~~~~~~~-------~al~~g~~vVigttg~~~e~~~~L~~~A~~~~ 156 (161)
....+.+. ..+..|.- |+-++..++.+.++|.+..++.+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~i-ivd~st~~~~~~~~l~~~l~~~g 111 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKT-LVDMSSISPIESKRFAKAVKEKG 111 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCE-EEECCCCCHHHHHHHHHHHHHcC
Confidence 33332221 12233444 44444456666667777666543
No 105
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.83 E-value=0.0001 Score=59.95 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=72.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee-----eeCCHHHHHhccc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS 102 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~-i~-----v~~dl~~~l~~~~ 102 (161)
+.+||+|.| +|.+|+.+++.+. ..+++++++.|+. ..|-|..++.....+.+ +. .+-+.++++.
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~-~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~--- 104 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLH-EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE--- 104 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence 458999999 6999999999887 5699999999952 34556555543211111 11 1123455555
Q ss_pred ccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341 103 QSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 103 ~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~ 159 (161)
.++||+|.++.++... +++. +-+..+|+|-. .++++..+.| ++.+|+|
T Consensus 105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~rGi~~ 155 (227)
T cd01076 105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HERGVLV 155 (227)
T ss_pred --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HHCCCEE
Confidence 4899999999776663 4444 33588898864 4665555444 4456655
No 106
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.80 E-value=0.0001 Score=64.96 Aligned_cols=98 Identities=20% Similarity=0.229 Sum_probs=63.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh-------hcCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV-------CDMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--------------~g~~~~~~-------~g~~~~~~i~v~-- 91 (161)
|+||+|.| .||+||.+++.+...++++++++-|+.. -|+-.+++ +-+. ...+.++
T Consensus 85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~-G~~I~V~~~ 162 (421)
T PLN02272 85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEIN-GKQIKVTSK 162 (421)
T ss_pred ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEEC-CEEEEEEec
Confidence 57999999 6999999999987678999999988310 11100111 0000 1123333
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeC
Q 031341 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYV 137 (161)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~-~vVigt 137 (161)
.++++.... +.++|+|+++|-.....+.+...++.|. .||+-.
T Consensus 163 ~dp~~~~w~---~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIda 206 (421)
T PLN02272 163 RDPAEIPWG---DFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISA 206 (421)
T ss_pred CCcccCccc---ccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECC
Confidence 355554431 2379999988877777888888899984 455543
No 107
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.78 E-value=6.7e-05 Score=57.18 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=57.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~--------g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D 108 (161)
||+|+|+ |.+|..++..+. ..+.++. +..++.. +.+...+.+..-+..+.+++|++++++ ++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la-~~g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad 71 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLA-DNGHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DAD 71 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHH-HCTEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-S
T ss_pred CEEEECc-CHHHHHHHHHHH-HcCCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------ccc
Confidence 7999995 999999999887 5555544 5554310 111111111111235678899999985 799
Q ss_pred EEEEccCchhHHH---HHHHHHHcCCcEEEeCCCC
Q 031341 109 VVIDFTDASTVYD---NVKQATAFGMRSVVYVPHI 140 (161)
Q Consensus 109 VVIDfT~p~~~~~---~~~~al~~g~~vVigttg~ 140 (161)
++|-.++...+.+ .+..+++.+.++|+-+-|+
T Consensus 72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 9995555554443 4445567888888877677
No 108
>PLN02256 arogenate dehydrogenase
Probab=97.75 E-value=0.00056 Score=57.83 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=53.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
+++||+|+| +|.||+.+++.+.+ .+.++.+ +++... . +.+ ...++..+++.++++. ..+|+||.+
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~-~G~~V~~-~d~~~~-~---~~a---~~~gv~~~~~~~e~~~-----~~aDvVila 99 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVK-QGHTVLA-TSRSDY-S---DIA---AELGVSFFRDPDDFCE-----EHPDVVLLC 99 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEE-EECccH-H---HHH---HHcCCeeeCCHHHHhh-----CCCCEEEEe
Confidence 458999999 69999999999874 4678774 554321 1 111 1345556788888764 368999977
Q ss_pred cCchhHHHHHHHH
Q 031341 114 TDASTVYDNVKQA 126 (161)
Q Consensus 114 T~p~~~~~~~~~a 126 (161)
++|....+.+...
T Consensus 100 vp~~~~~~vl~~l 112 (304)
T PLN02256 100 TSILSTEAVLRSL 112 (304)
T ss_pred cCHHHHHHHHHhh
Confidence 7777666666554
No 109
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.72 E-value=7.3e-05 Score=59.59 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=31.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
|||+|+||+|+.|+++++.+. ..|.|+++++.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeCh
Confidence 699999999999999999986 8899999999853
No 110
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.70 E-value=0.00061 Score=57.40 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=72.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
+||+.+| +|.||.-+++.+. ..|+++. ++|++.. ...+.+ ...|.....+..++.. ..|+||-+-+
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~-~aG~~v~-v~~r~~~--ka~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLL-KAGHEVT-VYNRTPE--KAAELL---AAAGATVAASPAEAAA------EADVVITMLP 66 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHH-HCCCEEE-EEeCChh--hhhHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence 4899999 7999999999998 6678755 7776532 112222 1347777888878775 7999884433
Q ss_pred ch-hHHHHHH---HHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 116 AS-TVYDNVK---QAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 116 p~-~~~~~~~---~al---~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
.. .+.+.+. -.+ +.|.-+|-.+| .+++..+++.+.+++.+.-
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~~G~~ 115 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAAKGLE 115 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHHHHHHHHHHHHhcCCc
Confidence 33 3333332 122 35666666555 7889999999988887543
No 111
>PLN02712 arogenate dehydrogenase
Probab=97.69 E-value=0.00084 Score=62.44 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=63.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
+++||+|+| .|.||+.+++.+.+ .+.+++ ++|+... .+ .+ .+.|+..+.++++++. ..+|+||-+
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~-~G~~V~-~~dr~~~-~~---~a---~~~Gv~~~~~~~el~~-----~~aDvVILa 432 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVK-QGHTVL-AYSRSDY-SD---EA---QKLGVSYFSDADDLCE-----EHPEVILLC 432 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHH-CcCEEE-EEECChH-HH---HH---HHcCCeEeCCHHHHHh-----cCCCEEEEC
Confidence 458999999 69999999999974 578877 5665421 11 11 1345556788888764 258999977
Q ss_pred cCchhHHHHHHHHHH--c-CCcEEEeCCCCCHHHHHHHHHH
Q 031341 114 TDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAF 151 (161)
Q Consensus 114 T~p~~~~~~~~~al~--~-g~~vVigttg~~~e~~~~L~~~ 151 (161)
++|....+.+..... . .-.+|+-.+.......+.+.++
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~ 473 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQH 473 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHh
Confidence 776666665554332 1 1235554432222334444444
No 112
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.68 E-value=0.00017 Score=57.26 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=57.3
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----eCCHHHHHhcccccCCccEEEEc
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
|+|+|++|+.|+.+++.|.. +++++.+++.... ......+- ..|+.+ ++|.+.+.+.+ .+.|+|+-.
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al---~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL---KGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH---TTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH---cCCceEEee
Confidence 78999999999999999996 9999999888531 11111111 122211 23434332221 489999977
Q ss_pred cC---ch---hHHHHHHHHHHcCCcEEEe
Q 031341 114 TD---AS---TVYDNVKQATAFGMRSVVY 136 (161)
Q Consensus 114 T~---p~---~~~~~~~~al~~g~~vVig 136 (161)
+. +. .....+.+|.+.|+..++=
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEE
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEE
Confidence 65 22 3346778999999888864
No 113
>PLN02712 arogenate dehydrogenase
Probab=97.66 E-value=0.00074 Score=62.78 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=64.2
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
++++||+|+| .|+||+.+++.+.+. ++++++ +|+... .. .+ ...|+..+.+++++.. ..+|+||.
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~-G~~V~~-~dr~~~-~~---~A---~~~Gv~~~~d~~e~~~-----~~aDvViL 114 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQ-GHTVLA-HSRSDH-SL---AA---RSLGVSFFLDPHDLCE-----RHPDVILL 114 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEE-EeCCHH-HH---HH---HHcCCEEeCCHHHHhh-----cCCCEEEE
Confidence 3568999999 699999999998754 788765 554321 11 11 1346666788888664 36899997
Q ss_pred ccCchhHHHHHHHHH-Hc-C-CcEEEeCCCCCHHHHHHHHHHh
Q 031341 113 FTDASTVYDNVKQAT-AF-G-MRSVVYVPHIQLETVSALSAFC 152 (161)
Q Consensus 113 fT~p~~~~~~~~~al-~~-g-~~vVigttg~~~e~~~~L~~~A 152 (161)
+++|....+.+.... .+ + -.+|+-++.....-.+.+.+..
T Consensus 115 avP~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l 157 (667)
T PLN02712 115 CTSIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL 157 (667)
T ss_pred cCCHHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence 777766666555432 21 1 2355544433333334444443
No 114
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=97.64 E-value=0.00023 Score=59.00 Aligned_cols=87 Identities=17% Similarity=0.315 Sum_probs=58.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee------CCHHHHHhcccccCCccE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM------SDLTMVLGSISQSKARAV 109 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~------~dl~~~l~~~~~~~~~DV 109 (161)
+||.|.|+||- |+.+++.+.+ .+.++++-+.... +...-.- ..+.++. .++.+.+. +.++|+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~~~~-----~g~~~v~~g~l~~~~l~~~l~----~~~i~~ 68 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHLYPI-----HQALTVHTGALDPQELREFLK----RHSIDI 68 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-ccccccc-----cCCceEEECCCCHHHHHHHHH----hcCCCE
Confidence 58999999998 9999999874 4788887666432 2211110 0112222 33444554 368999
Q ss_pred EEEccCchhH--HHH-HHHHHHcCCcEE
Q 031341 110 VIDFTDASTV--YDN-VKQATAFGMRSV 134 (161)
Q Consensus 110 VIDfT~p~~~--~~~-~~~al~~g~~vV 134 (161)
|||+|+|-+. -++ ...|.+.|+|.+
T Consensus 69 VIDAtHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 69 LVDATHPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999999765 244 478899999988
No 115
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.63 E-value=0.00052 Score=57.56 Aligned_cols=80 Identities=19% Similarity=0.096 Sum_probs=52.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
+||+|+| +|.||+.+++.+. ..+.++. +++++.. .+++++++ +.|+|| ++.
T Consensus 5 m~I~iiG-~G~~G~~lA~~l~-~~G~~V~-~~~r~~~-------------------~~~~~~~~------~advvi-~~v 55 (308)
T PRK14619 5 KTIAILG-AGAWGSTLAGLAS-ANGHRVR-VWSRRSG-------------------LSLAAVLA------DADVIV-SAV 55 (308)
T ss_pred CEEEEEC-ccHHHHHHHHHHH-HCCCEEE-EEeCCCC-------------------CCHHHHHh------cCCEEE-EEC
Confidence 7899999 5999999999987 5578865 6665321 36677764 789988 555
Q ss_pred chhHH-HHHHHH----HHcCCcEEEeCCCCCHHH
Q 031341 116 ASTVY-DNVKQA----TAFGMRSVVYVPHIQLET 144 (161)
Q Consensus 116 p~~~~-~~~~~a----l~~g~~vVigttg~~~e~ 144 (161)
|.... +.+... +..++-+|..++|++++.
T Consensus 56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~ 89 (308)
T PRK14619 56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPET 89 (308)
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCC
Confidence 55443 333332 233555666666676544
No 116
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.63 E-value=0.00048 Score=61.97 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=71.2
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeeeCCHHHHHhcccccCCccE
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAV 109 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~---i~v~~dl~~~l~~~~~~~~~DV 109 (161)
+.+.+|+++| +|.||+.+++.+. ..+++|+ |.|++.. +..++.......| +..+++++++.+.+ ..+|+
T Consensus 4 ~~~~~IG~IG-LG~MG~~mA~nL~-~~G~~V~-V~NRt~~--k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dv 75 (493)
T PLN02350 4 AALSRIGLAG-LAVMGQNLALNIA-EKGFPIS-VYNRTTS--KVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRS 75 (493)
T ss_pred CCCCCEEEEe-eHHHHHHHHHHHH-hCCCeEE-EECCCHH--HHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCE
Confidence 3457899999 7999999999998 5688866 7886532 2222221000112 23568899887532 25898
Q ss_pred EEEccCch--hHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 110 VIDFTDAS--TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 110 VIDfT~p~--~~~~~---~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
|| ...|+ .+.+. +...++.|.-+|-++| .++++..++.+.+++.++-|
T Consensus 76 Ii-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~Gi~f 128 (493)
T PLN02350 76 VI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEKGLLY 128 (493)
T ss_pred EE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHcCCeE
Confidence 88 44443 22333 3445556655554444 55667777777777766544
No 117
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.61 E-value=0.00013 Score=62.00 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=63.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCC--CeeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPL--EIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~-~~~~--~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
-+++|+| +|.+|+.+++.+....+++-+.+++++.. +..++... .... .+..++++++++. ++|+||-
T Consensus 128 ~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~ 198 (325)
T PRK08618 128 KTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFE--KAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT 198 (325)
T ss_pred cEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHH--HHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence 4799999 59999999998887789999999997531 22222210 0112 3455789999885 7999995
Q ss_pred ccCchhHHHHHHHHHHcCCcEE-EeC
Q 031341 113 FTDASTVYDNVKQATAFGMRSV-VYV 137 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vV-igt 137 (161)
+| |..+.... ..++.|+||. +|.
T Consensus 199 aT-~s~~p~i~-~~l~~G~hV~~iGs 222 (325)
T PRK08618 199 VT-NAKTPVFS-EKLKKGVHINAVGS 222 (325)
T ss_pred cc-CCCCcchH-HhcCCCcEEEecCC
Confidence 55 55554444 7889999986 554
No 118
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.61 E-value=0.00096 Score=56.15 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=60.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~--------g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~ 107 (161)
|||+|+|+ |.||..++..+. ..+.++. ++++... +.+...+.+...+.++.+++++++.+. ..+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~-~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALS-SKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHH-HCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence 58999996 999999999887 4567765 6665311 001110112111234667788888763 378
Q ss_pred cEEEEccCchhHHHHHHHHH----HcCCcEEEeCCCCCH
Q 031341 108 AVVIDFTDASTVYDNVKQAT----AFGMRSVVYVPHIQL 142 (161)
Q Consensus 108 DVVIDfT~p~~~~~~~~~al----~~g~~vVigttg~~~ 142 (161)
|++|-++.+....+.+.... ..+.++|+.+-|+..
T Consensus 73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99996666655555554433 345567776667643
No 119
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.61 E-value=0.00067 Score=58.87 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=62.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC-CC-----------cchhhhhcCCCCCCeeeeCCHH
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS-VG-----------EDIGMVCDMEQPLEIPVMSDLT 95 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~------~~eLvavvd~~~-~g-----------~~~~~~~g~~~~~~i~v~~dl~ 95 (161)
+++||+|+| +|.+|.+++..+.+.. +.++.--..++. .+ .+..-+.|+.-+.++..++|++
T Consensus 10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 468999999 5999999999987542 134332222221 11 1111122332234566789999
Q ss_pred HHHhcccccCCccEEEEccCchhHHHHHHHH-----HHcCCcEEEeCCCCCHHH
Q 031341 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQA-----TAFGMRSVVYVPHIQLET 144 (161)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~a-----l~~g~~vVigttg~~~e~ 144 (161)
++++ +.|+||-..+|....+.+... +..+..+|+.+.|++.++
T Consensus 89 eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 89 EAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence 8885 789988566666555555443 333456777777876544
No 120
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=97.57 E-value=0.00035 Score=60.50 Aligned_cols=97 Identities=22% Similarity=0.150 Sum_probs=60.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEecC--------------CCCcchhhh--------------hcC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDSH--------------SVGEDIGMV--------------CDM 82 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~----~~~eLvavvd~~--------------~~g~~~~~~--------------~g~ 82 (161)
++||+|.| .||+||.+.|.+.+. +++|+|++-|+. .-|+--.++ +-+
T Consensus 3 ~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 3 PIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred ceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 47999999 699999999998764 689999998831 012100000 000
Q ss_pred CCCCCeeee---CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEe
Q 031341 83 EQPLEIPVM---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVY 136 (161)
Q Consensus 83 ~~~~~i~v~---~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g-~~vVig 136 (161)
. ...+.++ .|++++-.. +.++|+|||+|---...+.+..-++.| +.||+-
T Consensus 82 n-g~~I~~~~~~~dP~~ipW~---~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiS 135 (361)
T PTZ00434 82 N-GHRIKCVKAQRNPADLPWG---KLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVIS 135 (361)
T ss_pred C-CEEEEEEEecCChhhCchh---hcCCCEEEeCceeeccHHHHhhhhhcCCCEEEEC
Confidence 0 1124443 466666442 358999999885555555555666666 555553
No 121
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.54 E-value=0.00081 Score=57.65 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=73.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC------CCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------SVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~------~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~ 107 (161)
|+||+|+|+ |..|..++..+. ..+.++.--..++ ... .+..-+-|+.-+.++..++|++++++ ++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence 579999995 999999999887 4444443222210 011 12111223323556778899999995 69
Q ss_pred cEEEEccCchhHH-HHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341 108 AVVIDFTDASTVY-DNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (161)
Q Consensus 108 DVVIDfT~p~~~~-~~~~---~al~~g~~vVigttg~~~e~~~~L~~~A~~~ 155 (161)
|+++ +..|.... +.+. ..+..+.++|+.+-|+.++..+.+.++.++.
T Consensus 73 d~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 73 DIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred CEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence 9998 66666554 3333 3567888999988898877777777766654
No 122
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.54 E-value=0.00029 Score=53.55 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=51.2
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCH---HHHHhcccccCCccEEEE
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL---TMVLGSISQSKARAVVID 112 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl---~~~l~~~~~~~~~DVVID 112 (161)
|.|.|++|.+|+.+++.+.+.. .++.+++.+.. +..+.. ...+.. +.|. .+++ .++|+||+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~---~~~~~~----~~~~~~~d~~d~~~~~~al------~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPS---KAEDSP----GVEIIQGDLFDPDSVKAAL------KGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG---GHHHCT----TEEEEESCTTCHHHHHHHH------TTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCch---hccccc----ccccceeeehhhhhhhhhh------hhcchhhh
Confidence 7899999999999999998554 99999998532 111111 111111 1333 4455 38999997
Q ss_pred ccCc----hh-HHHHHHHHHHcCCcEE
Q 031341 113 FTDA----ST-VYDNVKQATAFGMRSV 134 (161)
Q Consensus 113 fT~p----~~-~~~~~~~al~~g~~vV 134 (161)
+..| .. ....+..+.++|++-+
T Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 93 (183)
T PF13460_consen 67 AAGPPPKDVDAAKNIIEAAKKAGVKRV 93 (183)
T ss_dssp CCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred hhhhhcccccccccccccccccccccc
Confidence 6643 12 2334455667786544
No 123
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.53 E-value=0.0013 Score=54.69 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=66.4
Q ss_pred EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCchhH
Q 031341 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV 119 (161)
Q Consensus 40 ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~ 119 (161)
++| +|.||..+++.+. ..++++. ++|++. .....+. +.++...++++++++ +.|+||-+.++...
T Consensus 1 ~IG-lG~mG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLL-KAGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH 65 (288)
T ss_pred CCc-ccHhHHHHHHHHH-hCCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence 478 6999999999997 5577754 567543 1222222 345666788888875 68999955554333
Q ss_pred -HHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 120 -YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 120 -~~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
.+.+ ...+..|. +|+-+++.+++..+++.+.+++.++-
T Consensus 66 ~~~v~~g~~~l~~~~~~g~-~vid~st~~p~~~~~~~~~~~~~g~~ 110 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGS-LLIDCSTIDPDSARKLAELAAAHGAV 110 (288)
T ss_pred HHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 3332 22334444 45555568888888898888776543
No 124
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.53 E-value=0.0017 Score=58.12 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=69.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
|.+|+|+| .|.||+.+++.+. ..++++. ++|++.. ...++.......+ +..+++++++...+ .++|+|+-
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~-~~G~~V~-v~dr~~~--~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIA-SRGFKIS-VYNRTYE--KTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL 72 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHH-HCCCeEE-EEeCCHH--HHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence 46899999 6999999999997 5678754 7786431 1112211000113 34578999987531 25897775
Q ss_pred ccCch-hHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 113 FTDAS-TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 113 fT~p~-~~~~~---~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
+-+|. .+.+. +...++.|.-+|-++|+...+. .++.+..++.++-|
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt-~~r~~~l~~~Gi~f 122 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNT-ERRIKRCEEKGILY 122 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHH-HHHHHHHHHcCCeE
Confidence 64443 33333 3445667777777777654444 44445555555544
No 125
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=97.52 E-value=0.00095 Score=59.43 Aligned_cols=118 Identities=9% Similarity=0.080 Sum_probs=71.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hhc-CCC-CCCeeeeC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCD-MEQ-PLEIPVMS 92 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g---~~~~~----------------~~g-~~~-~~~i~v~~ 92 (161)
+.||+|.|+||.+|+..++.+.++|+ ++++++....... ..+.+ +-. +.. ..+..++.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence 47999999999999999999987755 9999998843210 00000 000 000 00223333
Q ss_pred ---CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341 93 ---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (161)
Q Consensus 93 ---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~ 156 (161)
++.++.. ..++|+|+..-.=-+...-...|+++|++|....-..=..-.+.|.+++++.+
T Consensus 137 G~egl~~la~----~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~ 199 (454)
T PLN02696 137 GEEGIVEVAR----HPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHG 199 (454)
T ss_pred CHHHHHHHHc----CCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcC
Confidence 4444444 36789998655544455666889999999988543211222345666776654
No 126
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.50 E-value=0.0018 Score=57.31 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=62.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
|||+|+|++|.||+.+++.+. ..+.++. +++++. ....+.+ ...++...++.++++. ++|+||.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~-~~G~~V~-v~~r~~--~~~~~~a---~~~gv~~~~~~~e~~~------~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLK-EKGFEVI-VTGRDP--KKGKEVA---KELGVEYANDNIDAAK------DADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHH-HCCCEEE-EEECCh--HHHHHHH---HHcCCeeccCHHHHhc------cCCEEEEecC
Confidence 589999867999999999987 4567765 455432 1111222 1345556678888774 7899997776
Q ss_pred chhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341 116 ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCD 153 (161)
Q Consensus 116 p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~L~~~A~ 153 (161)
++...+.+..... .+. +|+-.+.......+.+.+...
T Consensus 68 ~~~~~~vl~~l~~~l~~~~-iViDvsSvK~~~~~~l~~~~~ 107 (437)
T PRK08655 68 INVTEDVIKEVAPHVKEGS-LLMDVTSVKERPVEAMEEYAP 107 (437)
T ss_pred HHHHHHHHHHHHhhCCCCC-EEEEcccccHHHHHHHHHhcC
Confidence 6655555544433 333 444333333444556665543
No 127
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.50 E-value=0.00034 Score=59.01 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=82.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc--EEEEc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA--VVIDF 113 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D--VVIDf 113 (161)
+|.|+| -+.|...+...... |+++|+|+..... ++..+++ ..+|+|.|...|++-+ .+| +|+.=
T Consensus 6 sVvV~G--trFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVvVr 72 (361)
T COG4693 6 SVVVCG--TRFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVVVR 72 (361)
T ss_pred eEEEec--chHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEEEe
Confidence 899999 59999999988876 9999999998432 2334444 3679999999999875 566 33323
Q ss_pred cC--chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 114 TD--ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 114 T~--p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
+. -....+.++..+++|++|+.+-+ +-++++..|.++|++-+-
T Consensus 73 sai~Gg~Gs~larall~RGi~VlqEHP-l~p~di~~l~rlA~rqG~ 117 (361)
T COG4693 73 SAIVGGQGSALARALLARGIHVLQEHP-LHPRDIQDLLRLAERQGR 117 (361)
T ss_pred eeeecCCcHHHHHHHHHcccHHHHhCC-CCHHHHHHHHHHHHHhCc
Confidence 32 23446888999999999999887 667899999999998653
No 128
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=97.49 E-value=0.00058 Score=56.56 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=82.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
.||.+-|.+|+-|.-+.++.+ .-+..+|+.+.+...|. ..+|.|+|.+++|+.++ .++|+-+.|-+
T Consensus 39 TkVi~QGfTGKqgTFHs~q~~-eYgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyVP 104 (329)
T KOG1255|consen 39 TKVICQGFTGKQGTFHSQQAL-EYGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYVP 104 (329)
T ss_pred ceEEEecccCCccceeHHHHH-HhCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEeC
Confidence 799999999999999999877 67899999999765442 25688999999999885 88998777999
Q ss_pred chhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHH
Q 031341 116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALS 149 (161)
Q Consensus 116 p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~L~ 149 (161)
|.....-+..++++-+++++.-| |....+.-++.
T Consensus 105 pp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk 139 (329)
T KOG1255|consen 105 PPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVK 139 (329)
T ss_pred ChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHH
Confidence 99999999999999999998866 66544443333
No 129
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.44 E-value=0.00023 Score=61.21 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=59.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCC--------cEEEEEEecCC-------------CCcchhhhhcCCCCCCeeeeCCHH
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSHS-------------VGEDIGMVCDMEQPLEIPVMSDLT 95 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~--------~eLvavvd~~~-------------~g~~~~~~~g~~~~~~i~v~~dl~ 95 (161)
||+|+| +|.+|..++..+.. .+ .++.- ..+.. ...+...+.|+.-+.++.+++|++
T Consensus 1 kI~VIG-aG~wGtALA~~la~-ng~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAE-NARALPELFEESVRM-WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLV 77 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHH-cCCcccccCCceEEE-EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHH
Confidence 689999 59999999998874 33 44332 32210 001111112321123466789999
Q ss_pred HHHhcccccCCccEEEEccCchhHHHHH---HHHHHcCCcEEEeCCCCCHH
Q 031341 96 MVLGSISQSKARAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLE 143 (161)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~---~~al~~g~~vVigttg~~~e 143 (161)
+++. ++|++|-..++....+.+ ...++.+.++|+-+-|++.+
T Consensus 78 eal~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 78 EAAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 9885 789988444444443434 33456677888888788765
No 130
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.41 E-value=0.0038 Score=52.20 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=57.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
.||+|+| +|.||+.+++.+.+. +. .-+.++|+... ...... +.++ .+..+.++++. ++|+||.
T Consensus 7 ~~I~IIG-~G~mG~sla~~l~~~-g~~~~V~~~dr~~~--~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVii 72 (307)
T PRK07502 7 DRVALIG-IGLIGSSLARAIRRL-GLAGEIVGADRSAE--TRARAR----ELGLGDRVTTSAAEAVK------GADLVIL 72 (307)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhc-CCCcEEEEEECCHH--HHHHHH----hCCCCceecCCHHHHhc------CCCEEEE
Confidence 6899999 699999999998754 43 23446675421 111111 1222 34567777764 7999997
Q ss_pred ccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHH
Q 031341 113 FTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAF 151 (161)
Q Consensus 113 fT~p~~~~~~~~~---al~~g~~vVigttg~~~e~~~~L~~~ 151 (161)
++++....+.+.. +++.+. +|+-..+.+.+..+.+.+.
T Consensus 73 avp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~ 113 (307)
T PRK07502 73 CVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPH 113 (307)
T ss_pred CCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHh
Confidence 7766554444433 333444 4443444444555555444
No 131
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=97.39 E-value=0.00068 Score=58.09 Aligned_cols=96 Identities=24% Similarity=0.200 Sum_probs=62.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh-------hcCCCCC-Ceeee--
Q 031341 37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV-------CDMEQPL-EIPVM-- 91 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~-------------~~g~~~~~~-------~g~~~~~-~i~v~-- 91 (161)
||+|.| .||+||.+.|.+.+. +++++|++-|.. .-|+--.++ +-+. .. .+.++
T Consensus 1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~-g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVN-GKFVIVVASE 78 (327)
T ss_pred CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEEC-CeEEEEEEec
Confidence 799999 699999999998876 589999998831 012100000 0010 11 23333
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
.++++.... +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 79 ~dp~~~~w~---~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 79 RDPSDLPWK---ALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred CCcccCchh---hcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 255554331 2479999988888888888999999997766533
No 132
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.37 E-value=0.0026 Score=50.78 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=52.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCCCCCCe--ee-eCCHHHHHhcccccCCccEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEI--PV-MSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~-~~g~~~~~~i--~v-~~dl~~~l~~~~~~~~~DVV 110 (161)
|||+|+|++|.||+.+++.+.+ .+.++. ++++.... ....+ ........++ .+ ..+..+++. .+|+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~------~aDvV 72 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK-AGNKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK------RADVV 72 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh-CCCEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh------cCCEE
Confidence 5899997569999999999974 567776 44643210 11111 0000001121 12 235556664 68999
Q ss_pred EEccCchhHHHHHHHHHH--cCCcEEEeCCCCC
Q 031341 111 IDFTDASTVYDNVKQATA--FGMRSVVYVPHIQ 141 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~--~g~~vVigttg~~ 141 (161)
|-+..|....+.+..... .++-+|.-+-|++
T Consensus 73 ilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 73 ILAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred EEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 966666655555443321 3443444333544
No 133
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.36 E-value=0.0013 Score=53.07 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=65.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-CCCCeeee-----CCHHHHHhcccc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSISQ 103 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~-~~~~i~v~-----~dl~~~l~~~~~ 103 (161)
..||+|.| +|++|+.+++.|. ..+..+|++.|.+ . |-+..++.... ...++..+ .+-++++.
T Consensus 23 g~~vaIqG-fGnVG~~~a~~L~-~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---- 95 (217)
T cd05211 23 GLTVAVQG-LGNVGWGLAKKLA-EEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG---- 95 (217)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee----
Confidence 48999999 6999999999987 4589999999953 3 44443333211 01122222 13345554
Q ss_pred cCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341 104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSAL 148 (161)
Q Consensus 104 ~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~L 148 (161)
.++|++|.++..+.. +...+.+.+.++|+|.. .++++..+.|
T Consensus 96 -~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L 139 (217)
T cd05211 96 -LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL 139 (217)
T ss_pred -ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH
Confidence 489999988765533 22334467799999864 3556544444
No 134
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.00056 Score=58.42 Aligned_cols=103 Identities=15% Similarity=0.208 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc------CchhHHH
Q 031341 48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD 121 (161)
Q Consensus 48 Gr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~ 121 (161)
|+...-.+...+-+.+++++|+...+.+....++- ...++|+.++++++++. ..|+++.-. .|....+
T Consensus 15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~-~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~ 88 (339)
T COG3367 15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGG-DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWRE 88 (339)
T ss_pred chhhhhhhcccccceeeeEEeeeccccccHHHhCC-ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHH
Confidence 44333334445559999999977666444433333 26799999999999973 458766544 3456668
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 122 ~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
.+..|+++|++||.|---+ .++...+.++|++.++
T Consensus 89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~ 123 (339)
T COG3367 89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGV 123 (339)
T ss_pred HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCC
Confidence 9999999999999876545 6778899999999876
No 135
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.36 E-value=0.002 Score=54.78 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=79.2
Q ss_pred cceeEEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhc
Q 031341 21 AKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (161)
Q Consensus 21 ~~~~~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~ 100 (161)
+..-++++..+++. .|||-+| .|.||+.+++.|. ..++.+. |+|+... ..-++ +..|..+.+++.|+.+
T Consensus 22 ~~~~~~s~~~~~s~-~~iGFIG-LG~MG~~M~~nLi-k~G~kVt-V~dr~~~--k~~~f----~~~Ga~v~~sPaeVae- 90 (327)
T KOG0409|consen 22 ASETAMSSRITPSK-TRIGFIG-LGNMGSAMVSNLI-KAGYKVT-VYDRTKD--KCKEF----QEAGARVANSPAEVAE- 90 (327)
T ss_pred cccccccccCCccc-ceeeEEe-eccchHHHHHHHH-HcCCEEE-EEeCcHH--HHHHH----HHhchhhhCCHHHHHh-
Confidence 33347777777755 8999999 7999999999998 5678765 7886531 12233 2457788899999985
Q ss_pred ccccCCccEEEEc-cCchhHHHHHH------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341 101 ISQSKARAVVIDF-TDASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (161)
Q Consensus 101 ~~~~~~~DVVIDf-T~p~~~~~~~~------~al~~g~~vVigttg~~~e~~~~L~~~A~~~ 155 (161)
..|++|-. +.|..+.+.+. ..+..|.+..+-.+..+++...+|.+.++..
T Consensus 91 -----~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~ 147 (327)
T KOG0409|consen 91 -----DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK 147 (327)
T ss_pred -----hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence 78987742 34444444332 2333555553444447788888887776654
No 136
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.35 E-value=0.00086 Score=55.94 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=28.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
|||.|.|++|.+|+.+++.+. ..+.++.++..+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll-~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQAL-DEGYQVRCLVRN 33 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHH-HCCCeEEEEEcC
Confidence 589999999999999999988 458998888764
No 137
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.35 E-value=0.0015 Score=58.21 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=73.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC-----------CeeeeCCHHHHH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL-----------EIPVMSDLTMVL 98 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-----~~~g~~~~~~~g~~~~~-----------~i~v~~dl~~~l 98 (161)
..||+|.| .|++|+..++.+. ..+.+|+++.|+ ...|-|..++....... +.. +.+.++++
T Consensus 232 g~rVaIqG-fGnVG~~~A~~L~-~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~ 308 (445)
T PRK09414 232 GKRVVVSG-SGNVAIYAIEKAQ-QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPW 308 (445)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccc
Confidence 37999999 6999999999887 578999999994 24566655443221100 111 12445555
Q ss_pred hcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341 99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSAL 148 (161)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L 148 (161)
. .++||+|-++..+.. .+++....+++..+|+|-. .++++..+.|
T Consensus 309 ~-----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L 356 (445)
T PRK09414 309 S-----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF 356 (445)
T ss_pred c-----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH
Confidence 4 589999988876555 5778877788999999864 3466655555
No 138
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.31 E-value=0.0022 Score=53.08 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=56.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ee-eeCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-VMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~-i~-v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
+||+|+| +|.||..++..+.+ .+.++. ++|+... ...... ..+ +. ..++.+ .+. ++|+||.+
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~-~g~~V~-~~d~~~~--~~~~a~----~~g~~~~~~~~~~-~~~------~aDlVila 64 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRS-LGHTVY-GVSRRES--TCERAI----ERGLVDEASTDLS-LLK------DCDLVILA 64 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEECCHH--HHHHHH----HCCCcccccCCHh-Hhc------CCCEEEEc
Confidence 4899999 69999999999874 477754 5564321 111111 112 11 223443 443 79999977
Q ss_pred cCchhHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHH
Q 031341 114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSA 150 (161)
Q Consensus 114 T~p~~~~~~~~~al~~--g~~vVigttg~~~e~~~~L~~ 150 (161)
+++....+.+.....+ ...+|+-+++...+..+.+.+
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~ 103 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEK 103 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHH
Confidence 7766665555544332 223454444455555554443
No 139
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.30 E-value=0.002 Score=57.55 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=63.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~-~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
+|+++| +|.||+.+++.+. ..++++. ++|++. ....++... ....++..+++++++.+.+ ..+|+|+-..+
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~-~~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMA-DHGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK 72 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHH-hcCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence 489999 7999999999997 5578755 677643 122222210 0001245567887766421 36888775554
Q ss_pred c-hhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 116 A-STVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 116 p-~~~~~~~---~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
| ..+.+.+ ...++.|.-+|-++|....+..+...+ .++.++-|
T Consensus 73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~f 119 (467)
T TIGR00873 73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGILF 119 (467)
T ss_pred CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCEE
Confidence 4 2333333 334455655655555444444444443 44444443
No 140
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.27 E-value=0.00092 Score=49.76 Aligned_cols=110 Identities=17% Similarity=0.031 Sum_probs=59.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
..||+|+|+ |.||+.+++.+.... ..-+.+++++.. .....+..+. ..-...+.+.++++. ++|+||..
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~Dvvi~~ 88 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--LGIAIAYLDLEELLA------EADLIINT 88 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--cccceeecchhhccc------cCCEEEeC
Confidence 468999995 999999999998654 445556775421 1111111111 000112456666653 79999977
Q ss_pred cCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 114 TDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 114 T~p~~~----~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
+++..+ .......++.+.-++--.+ ...+. .|.+.+++.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~~-~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 89 TPVGMKPGDELPLPPSLLKPGGVVYDVVY-NPLET--PLLKEARALGA 133 (155)
T ss_pred cCCCCCCCCCCCCCHHHcCCCCEEEEcCc-CCCCC--HHHHHHHHCCC
Confidence 766553 1122344566665442222 11111 56666666554
No 141
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00086 Score=55.76 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=61.9
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEE
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVV 110 (161)
.+++||+++||.|+.|+.+++.++.+|-+|+.=+.++...|.....+... +....-+ .|...+-+ ....|.+
T Consensus 17 ~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk~--eiqy~~lst~D~~klee----~~avd~w 90 (340)
T KOG4354|consen 17 EKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTKL--EIQYADLSTVDAVKLEE----PHAVDHW 90 (340)
T ss_pred CCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcchh--heeecccchhhHHHhhc----CCceeee
Confidence 35699999999999999999999999999999888887778766544321 1111111 22222222 2345566
Q ss_pred EEccCchhHHH-HHH-HHHHcCCcEEEe
Q 031341 111 IDFTDASTVYD-NVK-QATAFGMRSVVY 136 (161)
Q Consensus 111 IDfT~p~~~~~-~~~-~al~~g~~vVig 136 (161)
+ +..|..+.+ .+. .-..+|+..++-
T Consensus 91 v-maLPn~vckpfv~~~~s~~gks~iid 117 (340)
T KOG4354|consen 91 V-MALPNQVCKPFVSLTESSDGKSRIID 117 (340)
T ss_pred e-eecchhhHHHHHHHHhhcCCceeeee
Confidence 6 788887753 332 223455655543
No 142
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.25 E-value=0.0043 Score=54.12 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=43.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cC--------C------CCCC-eeeeCCHHHHHh
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E------QPLE-IPVMSDLTMVLG 99 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~-g~--------~------~~~~-i~v~~dl~~~l~ 99 (161)
|||+|+| +|+||..++..+. ..|+++.+ +|++.. .+..+. |. . ...+ +..++++++++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La-~~G~~V~~-~d~~~~--~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLA-DLGHEVTG-VDIDQE--KVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHH-hcCCeEEE-EECCHH--HHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 5899999 6999999999987 56888664 564311 111110 00 0 0013 566778888774
Q ss_pred cccccCCccEEEEcc
Q 031341 100 SISQSKARAVVIDFT 114 (161)
Q Consensus 100 ~~~~~~~~DVVIDfT 114 (161)
++|++|.+.
T Consensus 76 ------~advvii~v 84 (411)
T TIGR03026 76 ------DADVIIICV 84 (411)
T ss_pred ------hCCEEEEEe
Confidence 799988554
No 143
>PRK08223 hypothetical protein; Validated
Probab=97.25 E-value=0.0043 Score=52.33 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=61.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~-- 91 (161)
.-||.|+|+ |..|..+++.+. ..|+.=..++|.+. .|++..+. ..+.....+..+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 368999995 999999999987 66777777888431 12211111 111111122222
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHHHcCCcEEEeC
Q 031341 92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~g~~vVigt 137 (161)
++.++++. +.|+|||.+.. +.-...-..|.++|+|+|.+.
T Consensus 105 ~l~~~n~~~ll~------~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~ 151 (287)
T PRK08223 105 GIGKENADAFLD------GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAA 151 (287)
T ss_pred ccCccCHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 34556664 79999999853 344556688999999999873
No 144
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.24 E-value=0.0024 Score=49.65 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=55.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---------------CCcchhhh----h-cCCCCCCeeee-----
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------------VGEDIGMV----C-DMEQPLEIPVM----- 91 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---------------~g~~~~~~----~-g~~~~~~i~v~----- 91 (161)
||+|+|+ |.+|..+++.+. ..++.=+.++|.+. .|++..+. + .+....++..+
T Consensus 1 ~VlViG~-GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID 78 (174)
T ss_pred CEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence 6999995 999999999987 55776566788431 11111110 0 01001122111
Q ss_pred -CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHc-CCcEEEeC
Q 031341 92 -SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAF-GMRSVVYV 137 (161)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~-g~~vVigt 137 (161)
.++++.+. ++|+|||++.. +.-......+.++ ++|+|.+.
T Consensus 79 ~~~~~~~l~------~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 79 ENNLEGLFG------DCDIVVEAFDNAETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred hhhHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 23344553 79999998744 4334456677777 99999863
No 145
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.24 E-value=0.0021 Score=54.82 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=57.3
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-C------CCcchhhhh-cCCCCCCeeeeCCHHHHHhccccc
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS 104 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-~------~g~~~~~~~-g~~~~~~i~v~~dl~~~l~~~~~~ 104 (161)
..|+||+|+|+ |.||..++..+.+.. .++....++ . .+.+...+- +..-+.++.+++|+++++.
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~----- 76 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN----- 76 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh-----
Confidence 34689999995 999999999887553 233222211 0 111111110 1100123556788888774
Q ss_pred CCccEEEEccCchhHHHHHHH---HHHcCCcEEEeCCCCCH
Q 031341 105 KARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQL 142 (161)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~---al~~g~~vVigttg~~~ 142 (161)
.+|+||-++++....+.++. .+..+.++|+-+-|++.
T Consensus 77 -~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 77 -CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred -cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 78999956555544444433 34445567666557754
No 146
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.24 E-value=0.0026 Score=53.14 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=56.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----hhcCCCC--------CCeeeeCCHHHHHhcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----VCDMEQP--------LEIPVMSDLTMVLGSI 101 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~----~~g~~~~--------~~i~v~~dl~~~l~~~ 101 (161)
+.||+|+|+ |.||..++..+. ..+++++. +|+.... ....+ ..+...+ ..+..++|+++++.
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~-~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 78 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFA-RKGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS-- 78 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHH-hCCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc--
Confidence 358999995 999999999987 56788664 5642210 01100 0110000 01345678887764
Q ss_pred cccCCccEEEEccCchh--HHHH---HHHHHHcCCcEEEeCCCCCHHH
Q 031341 102 SQSKARAVVIDFTDAST--VYDN---VKQATAFGMRSVVYVPHIQLET 144 (161)
Q Consensus 102 ~~~~~~DVVIDfT~p~~--~~~~---~~~al~~g~~vVigttg~~~e~ 144 (161)
++|+||.+..++. ..+. +...+..+..+++-|.|++.++
T Consensus 79 ----~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~ 122 (311)
T PRK06130 79 ----GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA 122 (311)
T ss_pred ----cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence 7899997776543 1222 2223333444445556776443
No 147
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=97.22 E-value=0.00079 Score=57.11 Aligned_cols=82 Identities=22% Similarity=0.191 Sum_probs=59.4
Q ss_pred EecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc------CchhHHHHHHHHHHcCCcEEEeCCCC
Q 031341 67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI 140 (161)
Q Consensus 67 vd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~~~~~al~~g~~vVigttg~ 140 (161)
+|+...|++++++++. ..++|++++++++ . .++|++|.-. .|+...+.+..|+++|++||.|---
T Consensus 1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~- 71 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHD- 71 (301)
T ss_dssp E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChh-
Confidence 5777889999999986 3899999999999 3 4899888532 4667779999999999999998643
Q ss_pred CHHHHHHHHHHhhhcCe
Q 031341 141 QLETVSALSAFCDKASM 157 (161)
Q Consensus 141 ~~e~~~~L~~~A~~~~V 157 (161)
-..+..+|.++|++.++
T Consensus 72 ~L~ddpel~~~A~~~g~ 88 (301)
T PF07755_consen 72 FLSDDPELAAAAKKNGV 88 (301)
T ss_dssp -HCCHHHHHCCHHCCT-
T ss_pred hhccCHHHHHHHHHcCC
Confidence 34566789999998765
No 148
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.21 E-value=0.0025 Score=54.25 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=58.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
.||+|+| +|+||+.+++.+. ..+++++...++.. ....... +.|+.++ +.++++. .+|+|+-..+
T Consensus 4 kkIgiIG-~G~mG~AiA~~L~-~sG~~Viv~~~~~~--~~~~~a~----~~Gv~~~-s~~ea~~------~ADiVvLaVp 68 (314)
T TIGR00465 4 KTVAIIG-YGSQGHAQALNLR-DSGLNVIVGLRKGG--ASWKKAT----EDGFKVG-TVEEAIP------QADLIMNLLP 68 (314)
T ss_pred CEEEEEe-EcHHHHHHHHHHH-HCCCeEEEEECcCh--hhHHHHH----HCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence 5799999 5999999999997 55677654454321 1111111 2355444 5777764 7999997777
Q ss_pred chhHHHHH----HHHHHcCCcEEEeCCCCCHHHH
Q 031341 116 ASTVYDNV----KQATAFGMRSVVYVPHIQLETV 145 (161)
Q Consensus 116 p~~~~~~~----~~al~~g~~vVigttg~~~e~~ 145 (161)
|+...+.. ...++.| .+|+=..|++.+..
T Consensus 69 p~~~~~~v~~ei~~~l~~g-~iVs~aaG~~i~~~ 101 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEG-KTLGFSHGFNIHFV 101 (314)
T ss_pred cHhHHHHHHHHHHhhCCCC-cEEEEeCCccHhhc
Confidence 77343322 2233345 36666678876654
No 149
>PLN02858 fructose-bisphosphate aldolase
Probab=97.20 E-value=0.0035 Score=62.61 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=66.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
+.||+++| +|+||..+++.+. ..++++. ++|++. .....+. ..+....++++++.. .+|+|+-+-
T Consensus 324 ~~~IGfIG-lG~MG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIG-LGAMGFGMASHLL-KSNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIMV 388 (1378)
T ss_pred CCeEEEEC-chHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEec
Confidence 57899999 6999999999997 5678865 667542 2222222 234555678888875 789988433
Q ss_pred C-chhHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031341 115 D-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (161)
Q Consensus 115 ~-p~~~~~~~------~~al~~g~~vVigttg~~~e~~~~L~~~A~~ 154 (161)
. |....+.+ ...+..|.-+|. .+..+++..++|.+.+++
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh
Confidence 3 44333333 122345554444 444678888888777766
No 150
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.20 E-value=0.0075 Score=49.65 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=46.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCee-eeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~--eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~~dl~~~l~~~~~~~~~DVVID 112 (161)
+||+|+| +|.||+.+++.+.+. ++ ++. ++|++.. ...... ..|+. .+.+.+++. .+|+||.
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~-g~~~~v~-~~d~~~~--~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vil 64 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEK-GLISKVY-GYDHNEL--HLKKAL----ELGLVDEIVSFEELK-------KCDVIFL 64 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhc-CCCCEEE-EEcCCHH--HHHHHH----HCCCCcccCCHHHHh-------cCCEEEE
Confidence 4899999 699999999998754 43 444 4665321 111111 22321 234666643 4899997
Q ss_pred ccCchhHHHHHHHH
Q 031341 113 FTDASTVYDNVKQA 126 (161)
Q Consensus 113 fT~p~~~~~~~~~a 126 (161)
+++|....+.+...
T Consensus 65 avp~~~~~~~~~~l 78 (275)
T PRK08507 65 AIPVDAIIEILPKL 78 (275)
T ss_pred eCcHHHHHHHHHHH
Confidence 77777666666544
No 151
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.16 E-value=0.0015 Score=54.27 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=49.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc-
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT- 114 (161)
|||.|+|++|.+|+.+.+.+. ..+.++++. ++.. .|+. -.+.+.+.+.+ .+||+||.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~-~~~~~v~~~-~r~~--~dl~------------d~~~~~~~~~~----~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALK-ERGYEVIAT-SRSD--LDLT------------DPEAVAKLLEA----FKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHT-TTSEEEEEE-STTC--S-TT------------SHHHHHHHHHH----H--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHh-hCCCEEEEe-Cchh--cCCC------------CHHHHHHHHHH----hCCCeEeccce
Confidence 799999999999999999887 478887776 4321 1111 11344555553 4799999875
Q ss_pred ---------CchhH--------HHHHHHHHHcCCcEE
Q 031341 115 ---------DASTV--------YDNVKQATAFGMRSV 134 (161)
Q Consensus 115 ---------~p~~~--------~~~~~~al~~g~~vV 134 (161)
.|+.. ...++.|.++|.++|
T Consensus 61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li 97 (286)
T PF04321_consen 61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLI 97 (286)
T ss_dssp ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE
T ss_pred eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEE
Confidence 23221 234578888999987
No 152
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=97.16 E-value=0.0031 Score=47.30 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=60.5
Q ss_pred EEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhh-------------------hcCCCCCCeeeeCCH
Q 031341 38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMV-------------------CDMEQPLEIPVMSDL 94 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g---~~~~~~-------------------~g~~~~~~i~v~~dl 94 (161)
|.|.|+||.+|+..++.+.++| .++++++..+.... +.+.++ +.. ...++.++...
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~-~~~~~~v~~G~ 79 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPS-KGPGIEVLSGP 79 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHH-TTSSSEEEESH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhh-cCCCCEEEeCh
Confidence 6899999999999999999887 79999999853210 000000 000 02245555443
Q ss_pred HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031341 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVi 135 (161)
+.+.+ +....++|+|+-...=.....-...|+++|+.+-.
T Consensus 80 ~~l~~-~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 80 EGLEE-LAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp HHHHH-HHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred HHHHH-HhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence 33221 11236899998666666667888889999998876
No 153
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=97.15 E-value=0.0044 Score=50.68 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=59.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~-- 91 (161)
.-||.|+|+ |.+|..+++.|. ..|+.=..++|.+. .|++..+. ..+.....+..+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 369999995 999999999997 55777777888431 11111110 011001122111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt 137 (161)
.++++.+. +.|+|||++. ++.-...-..|.++++|+|.|.
T Consensus 102 ~i~~~~~~~~~~------~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 102 KLDDAELAALIA------EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred cCCHHHHHHHhh------cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 12334453 7999999984 4444456688999999999764
No 154
>PRK06046 alanine dehydrogenase; Validated
Probab=97.14 E-value=0.00094 Score=56.75 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=61.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVI 111 (161)
.-+|+|+| +|.+|+.+++.+...++++.+.++++.... ....+... +..+ +.+++|+++++ . +|+|+
T Consensus 129 ~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~l------~-aDiVv 198 (326)
T PRK06046 129 SKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS--SVVGCDVTVAEDIEEAC------D-CDILV 198 (326)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH--hhcCceEEEeCCHHHHh------h-CCEEE
Confidence 46899999 599999999999988999999999975311 11111111 1123 45678999887 2 89999
Q ss_pred EccCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341 112 DFTDASTVYDNV-KQATAFGMRSV-VYV 137 (161)
Q Consensus 112 DfT~p~~~~~~~-~~al~~g~~vV-igt 137 (161)
-+|+.. . +.+ ...++.|.||. +|.
T Consensus 199 ~aTps~-~-P~~~~~~l~~g~hV~~iGs 224 (326)
T PRK06046 199 TTTPSR-K-PVVKAEWIKEGTHINAIGA 224 (326)
T ss_pred EecCCC-C-cEecHHHcCCCCEEEecCC
Confidence 766432 2 222 33468899976 553
No 155
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.14 E-value=0.0027 Score=54.22 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=59.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
.+|+|+| .|+||+.+++.+...-++++.+ +|+... ... +..+....++++++. .+|+|+-..+
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~~--------~~~~~~~~~l~ell~------~aDvIvl~lP 209 (332)
T PRK08605 147 LKVAVIG-TGRIGLAVAKIFAKGYGSDVVA-YDPFPN-AKA--------ATYVDYKDTIEEAVE------GADIVTLHMP 209 (332)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCEEEE-ECCCcc-HhH--------HhhccccCCHHHHHH------hCCEEEEeCC
Confidence 6899999 6999999999985455788764 564321 111 112233468999985 7999995543
Q ss_pred chhHHHHH-----HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341 116 ASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (161)
Q Consensus 116 p~~~~~~~-----~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~ 156 (161)
.....+++ ...++.|.-+|-...|.-.++ +.|.++.+...
T Consensus 210 ~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~ 254 (332)
T PRK08605 210 ATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDNGL 254 (332)
T ss_pred CCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCC
Confidence 22222222 344566665554444543333 34444444433
No 156
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.14 E-value=0.00073 Score=57.51 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=62.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
.-+++|+| +|.||+.+++.+.....++-+.++|+... +...+.....+.+ +.+++|.++++. ++|+|+-
T Consensus 128 ~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~~--~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVit 198 (325)
T TIGR02371 128 SSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTPS--TREKFALRASDYEVPVRAATDPREAVE------GCDILVT 198 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEE
Confidence 36899999 59999999999988888999999997532 1112211001233 556799999885 7999995
Q ss_pred ccCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341 113 FTDASTVYDNV-KQATAFGMRSV-VYV 137 (161)
Q Consensus 113 fT~p~~~~~~~-~~al~~g~~vV-igt 137 (161)
+| |... +.+ ...++.|.|+. +|.
T Consensus 199 aT-~s~~-P~~~~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 199 TT-PSRK-PVVKADWVSEGTHINAIGA 223 (325)
T ss_pred ec-CCCC-cEecHHHcCCCCEEEecCC
Confidence 55 3322 222 34568899976 664
No 157
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.13 E-value=0.004 Score=53.40 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=58.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------------Ccchh-----hhhcCCCCCCeeee-
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------------GEDIG-----MVCDMEQPLEIPVM- 91 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~------------------g~~~~-----~~~g~~~~~~i~v~- 91 (161)
-||.|+|+ |..|..+++.|. ..|+.-+.++|++.. |++.. .+..+.....+..+
T Consensus 25 ~~VlIiG~-GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 25 KHVLIVGA-GALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred CcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 58999995 999999999997 667866778886421 11100 00011001122111
Q ss_pred -----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341 92 -----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 -----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt 137 (161)
.++++++. ++|+|||.+..... .-.-..|.++|+|.|.|.
T Consensus 103 ~~~~~~~~~~~~~------~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 103 TDVTVEELEELVK------EVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred ccCCHHHHHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 23455553 79999999955444 334478889999999663
No 158
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.13 E-value=0.0049 Score=52.91 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=58.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
.+|+|+| +|.||+.+++.+. ..+++++...++.....+... ..|+... +++++.. .+|+|+...+
T Consensus 18 ktIgIIG-~GsmG~AlA~~L~-~sG~~Vvv~~r~~~~s~~~A~------~~G~~~~-s~~eaa~------~ADVVvLaVP 82 (330)
T PRK05479 18 KKVAIIG-YGSQGHAHALNLR-DSGVDVVVGLREGSKSWKKAE------ADGFEVL-TVAEAAK------WADVIMILLP 82 (330)
T ss_pred CEEEEEe-eHHHHHHHHHHHH-HCCCEEEEEECCchhhHHHHH------HCCCeeC-CHHHHHh------cCCEEEEcCC
Confidence 6899999 6999999999997 668887755443221111111 2344444 8888875 7999996666
Q ss_pred chhHHHHH-HHH---HHcCCcEEEeCCCCCHHHH
Q 031341 116 ASTVYDNV-KQA---TAFGMRSVVYVPHIQLETV 145 (161)
Q Consensus 116 p~~~~~~~-~~a---l~~g~~vVigttg~~~e~~ 145 (161)
|....+.+ ... ++.|. +|+-..|++....
T Consensus 83 d~~~~~V~~~~I~~~Lk~g~-iL~~a~G~~i~~~ 115 (330)
T PRK05479 83 DEVQAEVYEEEIEPNLKEGA-ALAFAHGFNIHFG 115 (330)
T ss_pred HHHHHHHHHHHHHhcCCCCC-EEEECCCCChhhc
Confidence 65554444 222 33344 4455667765543
No 159
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.12 E-value=0.006 Score=53.27 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=23.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
|||+|+| +|+||..++..+. . +++++ ++|+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA-~-G~~Vi-gvD~ 30 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIA-Q-NHEVV-ALDI 30 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-h-CCcEE-EEEC
Confidence 5899999 6999999996655 4 78855 6674
No 160
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.08 E-value=0.013 Score=50.42 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=57.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEEcc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
||+|+| +|.||..+++.+.+ .+.++. +++++.......... ..++ ...+++++++. ++|+||.++
T Consensus 2 ~I~iIG-~GliG~siA~~L~~-~G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~------~aDlVilav 68 (359)
T PRK06545 2 TVLIVG-LGLIGGSLALAIKA-AGPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAAA------EADLIVLAV 68 (359)
T ss_pred eEEEEE-eCHHHHHHHHHHHh-cCCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHhc------CCCEEEEeC
Confidence 699999 69999999999874 455544 344322111111111 1222 12456777764 799999777
Q ss_pred CchhHHHHHHHHHHc--C-CcEEEeCCCCCHHHHHHHHHH
Q 031341 115 DASTVYDNVKQATAF--G-MRSVVYVPHIQLETVSALSAF 151 (161)
Q Consensus 115 ~p~~~~~~~~~al~~--g-~~vVigttg~~~e~~~~L~~~ 151 (161)
+|....+.+...... . -.+|+-.++...+..+.+.++
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 776655555544431 1 234443444545555555554
No 161
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.05 E-value=0.0031 Score=52.99 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=29.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
|+||.|.|++|.+|+.+++.+.+..+.++.++..
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 5799999999999999999998766789887653
No 162
>PLN03139 formate dehydrogenase; Provisional
Probab=97.05 E-value=0.012 Score=51.64 Aligned_cols=106 Identities=16% Similarity=0.092 Sum_probs=61.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
.+|+|+| +|+||+.+++.+. .-|+++.+ +|+... +. +.. ...++..++++++++. ..|+|+...+
T Consensus 200 ktVGIVG-~G~IG~~vA~~L~-afG~~V~~-~d~~~~--~~-~~~---~~~g~~~~~~l~ell~------~sDvV~l~lP 264 (386)
T PLN03139 200 KTVGTVG-AGRIGRLLLQRLK-PFNCNLLY-HDRLKM--DP-ELE---KETGAKFEEDLDAMLP------KCDVVVINTP 264 (386)
T ss_pred CEEEEEe-ecHHHHHHHHHHH-HCCCEEEE-ECCCCc--ch-hhH---hhcCceecCCHHHHHh------hCCEEEEeCC
Confidence 6899999 6999999999987 56899864 675321 11 111 1335555679999985 6999885543
Q ss_pred c-hhHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 116 A-STVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 116 p-~~~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
- +... +.....++.|.-+|--.-|--. +.+.|.++.+...+
T Consensus 265 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~AL~sG~l 310 (386)
T PLN03139 265 LTEKTRGMFNKERIAKMKKGVLIVNNARGAIM-DTQAVADACSSGHI 310 (386)
T ss_pred CCHHHHHHhCHHHHhhCCCCeEEEECCCCchh-hHHHHHHHHHcCCc
Confidence 1 2222 2223444445443322223222 33456665555444
No 163
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.04 E-value=0.0041 Score=53.13 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=41.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.+|+|+| +|+||+.+++.+. .-++++.+ +|+.... .. . ......++++++. .+|+|+...
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~-~~G~~V~~-~d~~~~~-~~-~--------~~~~~~~l~ell~------~aDiVil~l 206 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYA-GFGATITA-YDAYPNK-DL-D--------FLTYKDSVKEAIK------DADIISLHV 206 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-EeCChhH-hh-h--------hhhccCCHHHHHh------cCCEEEEeC
Confidence 6899999 6999999999887 56898774 5643210 00 0 1123468999986 799998544
No 164
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.02 E-value=0.0036 Score=56.13 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=60.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc-chhhh-----------hcCC-CCCC-eeeeCCHHHHHhcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-DIGMV-----------CDME-QPLE-IPVMSDLTMVLGSI 101 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~-~~~~~-----------~g~~-~~~~-i~v~~dl~~~l~~~ 101 (161)
+||+|+| +|.||+.++..+. ..|+++. ++|+..... ...+. .+.. ...+ +.+.+|++++++
T Consensus 5 ~kIavIG-~G~MG~~iA~~la-~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~-- 79 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFL-LAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA-- 79 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHH-hCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence 5899999 5999999999987 5588765 777542111 11100 0000 0112 567789988875
Q ss_pred cccCCccEEEEccCchhH-HH----HHHHHHHcCCcEEEeCCCCCHHHH
Q 031341 102 SQSKARAVVIDFTDASTV-YD----NVKQATAFGMRSVVYVPHIQLETV 145 (161)
Q Consensus 102 ~~~~~~DVVIDfT~p~~~-~~----~~~~al~~g~~vVigttg~~~e~~ 145 (161)
++|+|+...+++.. .+ .+...+..+.-+.+-|.+++..++
T Consensus 80 ----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l 124 (495)
T PRK07531 80 ----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDL 124 (495)
T ss_pred ----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 79999977655532 22 233334445445555668876543
No 165
>PLN02858 fructose-bisphosphate aldolase
Probab=97.02 E-value=0.011 Score=59.17 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=69.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-||+++| .|.||..+++.|. ..++++. ++|++. .....+. ..|..+.+++.++.. .+|+|| .+.
T Consensus 5 ~~IGfIG-LG~MG~~mA~~L~-~~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi-~~l 68 (1378)
T PLN02858 5 GVVGFVG-LDSLSFELASSLL-RSGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALV-VVL 68 (1378)
T ss_pred CeEEEEc-hhHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEE-EEc
Confidence 5799999 7999999999998 5688865 778643 2222332 346677889999875 689888 444
Q ss_pred ch--hHHHHH---HHHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031341 116 AS--TVYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (161)
Q Consensus 116 p~--~~~~~~---~~al---~~g~~vVigttg~~~e~~~~L~~~A~~~~ 156 (161)
|+ .+.+.+ ...+ ..|. +++-.+..+++..++|.+..++.+
T Consensus 69 ~~~~~v~~V~~g~~g~~~~l~~g~-iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 69 SHPDQVDDVFFGDEGAAKGLQKGA-VILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCcC-EEEECCCCCHHHHHHHHHHHHhcC
Confidence 43 333332 1122 3343 555555577888888888877766
No 166
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.02 E-value=0.016 Score=47.13 Aligned_cols=107 Identities=11% Similarity=0.167 Sum_probs=73.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
||||+|+. .|.-|.+++.++... =.-+++++.+.+.. . ....+..++.|..+ .++|++|=+
T Consensus 1 ~mki~vlt-~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~---~-----------~~fie~P~~~Lp~~---~e~Di~va~ 62 (224)
T COG1810 1 MMKILVLT-DGEYGKRAVNNLACKGFKNQFVAVKEYPEE---L-----------PDFIEEPEDLLPKL---PEADIVVAY 62 (224)
T ss_pred CcEEEEEe-eccchHHHHHhHhhhccccceEEEEecccc---c-----------cchhhCHHHhcCCC---CCCCEEEEe
Confidence 79999999 799999999999843 12456766664210 0 11224566666531 478988877
Q ss_pred c-CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 114 T-~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
+ +|+......+.+.+.|+..|+--.+-+.--.++|++.+++.++.+
T Consensus 63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~ 109 (224)
T COG1810 63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEF 109 (224)
T ss_pred ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceee
Confidence 6 899999999988888866655332223345667888888777665
No 167
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.00 E-value=0.011 Score=50.66 Aligned_cols=129 Identities=15% Similarity=0.130 Sum_probs=70.6
Q ss_pred cccccccccccceeEEee---CCCCCC--CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC
Q 031341 11 RMHHISQNVKAKRFISCS---TNPPQS--NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP 85 (161)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~~~--~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~ 85 (161)
|++-..|.++.-.|-... .....+ -.++||+| +|++|+++++.+. -=+|++. .+++... ....+ .
T Consensus 117 ~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG-~GrIG~avA~r~~-~Fgm~v~-y~~~~~~-~~~~~------~ 186 (324)
T COG1052 117 RIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG-LGRIGQAVARRLK-GFGMKVL-YYDRSPN-PEAEK------E 186 (324)
T ss_pred chHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC-CCHHHHHHHHHHh-cCCCEEE-EECCCCC-hHHHh------h
Confidence 344455666666655442 112111 26899999 7999999999887 6678866 4443321 11111 1
Q ss_pred CCeeeeCCHHHHHhcccccCCccEEEEccCchhHHH---HHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCe
Q 031341 86 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYD---NVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASM 157 (161)
Q Consensus 86 ~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~---~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~V 157 (161)
.+.. |-+++++++ ..|+++...+...... +.+.....+..+++-.| |--.+ .+.|.++-++-.+
T Consensus 187 ~~~~-y~~l~ell~------~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD-e~ALi~AL~~g~i 255 (324)
T COG1052 187 LGAR-YVDLDELLA------ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD-EQALIDALKSGKI 255 (324)
T ss_pred cCce-eccHHHHHH------hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccC-HHHHHHHHHhCCc
Confidence 2233 345999996 7999986664332222 22344455554554444 32222 2345555554443
No 168
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=96.99 E-value=0.0048 Score=55.24 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.5
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEe
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID 68 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~----~~~eLvavvd 68 (161)
..+.||+|.| .||+||.++|.+.+. ++++|+|+.+
T Consensus 125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~ 163 (477)
T PRK08289 125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVV 163 (477)
T ss_pred CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence 3468999999 699999999998866 6899999975
No 169
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.98 E-value=0.0056 Score=53.27 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=55.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHH--HHhcccccCCccEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV 110 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~e---Lvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~--~l~~~~~~~~~DVV 110 (161)
+||+|+|+||-.|+.+++.+.+++++. +..+.+....|+.. .+.+ ....+ .++++ .+ .+.|++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v-~~~~~~~~~------~~vDiv 68 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTL-QDAFDIDAL------KALDII 68 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceE-EcCcccccc------cCCCEE
Confidence 489999999999999999998777776 34444433333321 1111 12222 23322 34 379999
Q ss_pred EEccCchhH-HHHHHHHHHcCCc-EEE
Q 031341 111 IDFTDASTV-YDNVKQATAFGMR-SVV 135 (161)
Q Consensus 111 IDfT~p~~~-~~~~~~al~~g~~-vVi 135 (161)
+ |+.+... .+....+.++|.+ +|+
T Consensus 69 f-fa~g~~~s~~~~p~~~~aG~~~~VI 94 (366)
T TIGR01745 69 I-TCQGGDYTNEIYPKLRESGWQGYWI 94 (366)
T ss_pred E-EcCCHHHHHHHHHHHHhCCCCeEEE
Confidence 9 7655554 6788899999965 443
No 170
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.98 E-value=0.0018 Score=51.44 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=64.8
Q ss_pred eeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchhh-----
Q 031341 23 RFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIGM----- 78 (161)
Q Consensus 23 ~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~~----- 78 (161)
|-|..|....|.+ -||.|+|+ |..|.++++.|. ..|+.=..++|.+.. |++-.+
T Consensus 6 Rqi~l~G~e~Q~~L~~s~VlIiG~-gglG~evak~La-~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~ 83 (197)
T cd01492 6 RQIRLWGLEAQKRLRSARILLIGL-KGLGAEIAKNLV-LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLER 83 (197)
T ss_pred HHHHHhCHHHHHHHHhCcEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHH
Confidence 4455566667754 69999995 999999999997 778887888885321 111000
Q ss_pred hhcCCCCCCeee-----eCCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341 79 VCDMEQPLEIPV-----MSDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 79 ~~g~~~~~~i~v-----~~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt 137 (161)
+..+.....+.. ..+.++.+. ++|+||+.+.+... ...-+.|.++++|+|.+.
T Consensus 84 L~~lNp~v~i~~~~~~~~~~~~~~~~------~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 84 LRALNPRVKVSVDTDDISEKPEEFFS------QFDVVVATELSRAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHCCCCEEEEEecCccccHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 011110111211 112234443 68999987754433 455578888999988654
No 171
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.97 E-value=0.003 Score=49.33 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=52.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchhh----hh--cCC-------CCCCeeeeCCHHHHH
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIGM----VC--DME-------QPLEIPVMSDLTMVL 98 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-----~~~~~----~~--g~~-------~~~~i~v~~dl~~~l 98 (161)
||+|+|+ |.||+.++..+.. .|+++. ++|.+... ..+.. +. |.. ....+.+++|++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~-~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFAR-AGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHH-TTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred CEEEEcC-CHHHHHHHHHHHh-CCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence 7999995 9999999998874 489865 67743110 00111 00 000 012356678888764
Q ss_pred hcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHHH
Q 031341 99 GSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETV 145 (161)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~g~~vVigttg~~~e~~ 145 (161)
++|+||++.+-+. .+..+...+.....+.+-|.+++..++
T Consensus 78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 6899998874332 233333333444454454556765553
No 172
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.97 E-value=0.0087 Score=44.42 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=25.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
||.|+|+ |.+|..+++.|. ..++.=..++|.
T Consensus 1 ~VliiG~-GglGs~ia~~L~-~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLA-RSGVGKITLIDF 31 (143)
T ss_pred CEEEECC-CHHHHHHHHHHH-HCCCCEEEEEcC
Confidence 6899995 999999999997 667765667874
No 173
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.97 E-value=0.0087 Score=49.98 Aligned_cols=101 Identities=12% Similarity=0.176 Sum_probs=58.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc-c--------hhhhhcCC---------CCCCeeeeCCHHHH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-D--------IGMVCDME---------QPLEIPVMSDLTMV 97 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~-~--------~~~~~g~~---------~~~~i~v~~dl~~~ 97 (161)
-||+|+|+ |.||+.++..+. ..|++++ ++|++.... . ...+.... ....+.+++|+++
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCA-RAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD- 81 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence 48999995 999999999887 5689855 677432110 0 00011000 0012346788854
Q ss_pred HhcccccCCccEEEEccCchh-----HHHHHHHHH-HcCCcEEEeCCCCCHHHHH
Q 031341 98 LGSISQSKARAVVIDFTDAST-----VYDNVKQAT-AFGMRSVVYVPHIQLETVS 146 (161)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al-~~g~~vVigttg~~~e~~~ 146 (161)
++ ++|+||+.-.-+. .+..+.... ..+..+++-|+++...++.
T Consensus 82 ~~------~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la 130 (286)
T PRK07819 82 FA------DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA 130 (286)
T ss_pred hC------CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 43 7899997753322 223334444 5566666666677665544
No 174
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.96 E-value=0.0048 Score=51.19 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=55.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--------hh---cCCC-------CCCeeeeCCHHH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--------VC---DMEQ-------PLEIPVMSDLTM 96 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~--------~~---g~~~-------~~~i~v~~dl~~ 96 (161)
.||+|+|+ |.||+.++..+. ..+.++. ++|++... ....+ +. .... ...+.+++|+++
T Consensus 4 ~kIaViGa-G~mG~~iA~~la-~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTA-FHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHH-hcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 58999995 999999999886 4577744 56643110 00000 00 0000 124557789988
Q ss_pred HHhcccccCCccEEEEccCchh-H----HHHHHHHHHcCCcEEEeCCCCCHHHH
Q 031341 97 VLGSISQSKARAVVIDFTDAST-V----YDNVKQATAFGMRSVVYVPHIQLETV 145 (161)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~-~----~~~~~~al~~g~~vVigttg~~~e~~ 145 (161)
++. ++|+||.+.+.+. . .+.+...+..+..+++-|+.++..++
T Consensus 81 a~~------~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~ 128 (287)
T PRK08293 81 AVK------DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQF 128 (287)
T ss_pred Hhc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHH
Confidence 874 7999996653221 2 22233333444434344556655443
No 175
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.96 E-value=0.0041 Score=49.89 Aligned_cols=95 Identities=20% Similarity=0.222 Sum_probs=57.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---------------CCcchhhhh-----cCCCCCCeeee---
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------------VGEDIGMVC-----DMEQPLEIPVM--- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---------------~g~~~~~~~-----g~~~~~~i~v~--- 91 (161)
..||+|+|+ |.+|..+++.+. ..|+.=..++|.+. .|+...+.+ .+.....+..+
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 368999995 999999999997 45776666788431 111101000 00001122111
Q ss_pred ---CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHc-CCcEEEeC
Q 031341 92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAF-GMRSVVYV 137 (161)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~-g~~vVigt 137 (161)
.++++.+. ++|+|||++. ++.-......+.++ ++|+|.++
T Consensus 106 i~~~~~~~~~~------~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 106 IDEDNIEELFK------DCDIVVEAFDNAETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred cCHHHHHHHHc------CCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 12334453 7999999974 44445566788888 99999763
No 176
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.95 E-value=0.01 Score=49.17 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=69.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCCCC-----------C-CeeeeCCH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQP-----------L-EIPVMSDL 94 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~-----~~~g~~~~~~---~g~~~~-----------~-~i~v~~dl 94 (161)
-.||+|.| +|++|+..++.+. ..+..++++.|+ ...|-|..++ ...... + +.. +-+.
T Consensus 38 g~~vaIqG-fGnVG~~~a~~L~-e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~ 114 (254)
T cd05313 38 GKRVAISG-SGNVAQYAAEKLL-ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEG 114 (254)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCC
Confidence 37999999 6999999999886 568999999994 2345554333 100000 0 122 2255
Q ss_pred HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341 95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSAL 148 (161)
Q Consensus 95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L 148 (161)
++++. .++||++=+..-... .+++....+++..+|+|-. .++++..+.|
T Consensus 115 ~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L 166 (254)
T cd05313 115 KKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVF 166 (254)
T ss_pred cchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHH
Confidence 66665 589999966654444 5777777778999999865 3555544444
No 177
>PLN02427 UDP-apiose/xylose synthase
Probab=96.95 E-value=0.0055 Score=52.38 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.4
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.+..++||.|.|++|.+|+.+++.|.+..+.+++++..
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 34456899999999999999999998766688887643
No 178
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.95 E-value=0.0049 Score=50.24 Aligned_cols=97 Identities=24% Similarity=0.289 Sum_probs=63.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEE--ecCCCCcchhhhhcCCCCCCeeee-CCHHHHHhcccccCCccE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI--DSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV 109 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavv--d~~~~g~~~~~~~g~~~~~~i~v~-~dl~~~l~~~~~~~~~DV 109 (161)
++.||+|+| +|++|..+.-.++++ .-+|.-..+ |+...|-.-. .++|++-+ ..++-++.. -.-.++|.
T Consensus 3 sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdglara------arlgv~tt~egv~~ll~~-p~~~di~l 74 (310)
T COG4569 3 SKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARA------ARLGVATTHEGVIGLLNM-PEFADIDL 74 (310)
T ss_pred CcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHH------HhcCCcchhhHHHHHHhC-CCCCCcce
Confidence 568999999 899999887666666 445554444 4433332111 13455443 334445432 01134559
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~g~~vVigtt 138 (161)
|+|.|+...+.+++.++.+.|++.+==|+
T Consensus 75 vfdatsa~~h~~~a~~~ae~gi~~idltp 103 (310)
T COG4569 75 VFDATSAGAHVKNAAALAEAGIRLIDLTP 103 (310)
T ss_pred EEeccccchhhcchHhHHhcCCceeecch
Confidence 99999999999999999999999884443
No 179
>PRK07574 formate dehydrogenase; Provisional
Probab=96.94 E-value=0.011 Score=51.76 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=62.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
.+|+|+| +|+||+.+++.+. .-++++. ++|+.....+.. ...++..+.++++++. .+|+|+...+
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~-~fG~~V~-~~dr~~~~~~~~------~~~g~~~~~~l~ell~------~aDvV~l~lP 257 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLK-PFDVKLH-YTDRHRLPEEVE------QELGLTYHVSFDSLVS------VCDVVTIHCP 257 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCCEEE-EECCCCCchhhH------hhcCceecCCHHHHhh------cCCEEEEcCC
Confidence 6899999 6999999999887 5688876 456532111111 1234555679999986 7999985543
Q ss_pred chhHH-----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 116 ASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 116 p~~~~-----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
-.... +.....++.|.-+|--..|--. +.+.|.++.+...+
T Consensus 258 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~AL~sG~i 303 (385)
T PRK07574 258 LHPETEHLFDADVLSRMKRGSYLVNTARGKIV-DRDAVVRALESGHL 303 (385)
T ss_pred CCHHHHHHhCHHHHhcCCCCcEEEECCCCchh-hHHHHHHHHHhCCc
Confidence 11111 2334455666544432223222 33456666555444
No 180
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.92 E-value=0.0078 Score=49.04 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=51.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCC-ccEEEEcc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKA-RAVVIDFT 114 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~-~DVVIDfT 114 (161)
+|.|.|++|.+|+.+++.|.+ .+.++.++..+..... ..+.. -..++.=.+++.+++.....-.. +|.++..+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~ 75 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVA 75 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeC
Confidence 589999999999999999874 5889887776432110 01110 01111111233444410000014 78887555
Q ss_pred Cc-----hhHHHHHHHHHHcCCcEEE
Q 031341 115 DA-----STVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 115 ~p-----~~~~~~~~~al~~g~~vVi 135 (161)
.+ ......+..|.++|+.-|+
T Consensus 76 ~~~~~~~~~~~~~i~aa~~~gv~~~V 101 (285)
T TIGR03649 76 PPIPDLAPPMIKFIDFARSKGVRRFV 101 (285)
T ss_pred CCCCChhHHHHHHHHHHHHcCCCEEE
Confidence 32 1234566788889975443
No 181
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=96.92 E-value=0.01 Score=51.93 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=63.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh-------------hcCCC-----CCCeeeeC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV-------------CDMEQ-----PLEIPVMS 92 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g---~~~~~~-------------~g~~~-----~~~i~v~~ 92 (161)
|-||+|.|+||.+|+..++.+.++++ ++++++..+.... +.+.++ ..+.. ..++.++.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 35899999999999999999887754 9999998843210 000000 00000 00234443
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
..+.+.+ ++...++|+|+-...=-....-...|+++|+.+-..+
T Consensus 81 G~~~l~~-l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN 124 (389)
T TIGR00243 81 GEEGICE-MAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALAN 124 (389)
T ss_pred CHHHHHH-HHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence 3333221 1223568999966666666777888999999988754
No 182
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.92 E-value=0.0062 Score=53.96 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=60.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
--+|+|+| +|.+|+.+++.+. .-+++ |-++|++.. + ..+.. ..|..+ .++++++. .+|++|++|
T Consensus 212 Gk~VlViG-~G~IG~~vA~~lr-~~Ga~-ViV~d~dp~-r-a~~A~----~~G~~v-~~l~eal~------~aDVVI~aT 275 (425)
T PRK05476 212 GKVVVVAG-YGDVGKGCAQRLR-GLGAR-VIVTEVDPI-C-ALQAA----MDGFRV-MTMEEAAE------LGDIFVTAT 275 (425)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-hCCCE-EEEEcCCch-h-hHHHH----hcCCEe-cCHHHHHh------CCCEEEECC
Confidence 35899999 5999999999887 45777 445664321 1 11110 123333 36788774 799999988
Q ss_pred CchhHH-HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031341 115 DASTVY-DNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152 (161)
Q Consensus 115 ~p~~~~-~~~~~al~~g~~vVigttg~~~e~~~~L~~~A 152 (161)
-..... ......++.|.-++...-.-.+-+.+.|.+.+
T Consensus 276 G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 276 GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELA 314 (425)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcC
Confidence 543333 34555666776555433212223345566654
No 183
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.90 E-value=0.0051 Score=52.81 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=57.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------------Ccchhh-----hhcCCCCCCeeee-
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------------GEDIGM-----VCDMEQPLEIPVM- 91 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~------------------g~~~~~-----~~g~~~~~~i~v~- 91 (161)
-||.|+|+ |.+|+.+++.|. ..|+.=+.++|.+.. |.+..+ +..+.....+..+
T Consensus 25 ~~VlVvG~-GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 25 KHVLIIGA-GALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred CcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 68999996 999999999997 557866778885310 101000 0001001112111
Q ss_pred -----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341 92 -----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 -----~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt 137 (161)
.++++++. +.|+|||++. ++.-...-..|.++++|+|.+.
T Consensus 103 ~~~~~~~~~~~~~------~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 103 QDVTAEELEELVT------GVDLIIDATDNFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred ccCCHHHHHHHHc------CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 12344553 7899999984 4444555588999999999754
No 184
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.88 E-value=0.0052 Score=51.84 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=48.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
..||+|+|+ |.||+.+++.+.. .+..-+.+++++.. +..+++. +++. ..++++.+.+. .+|+||.
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~~--ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVi~ 244 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTYE--RAEELAK---ELGGNAVPLDELLELLN------EADVVIS 244 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCHH--HHHHHHH---HcCCeEEeHHHHHHHHh------cCCEEEE
Confidence 478999995 9999999999875 55555667776431 1222221 2222 22345666664 6899998
Q ss_pred ccCchhHHHHHHHHH
Q 031341 113 FTDASTVYDNVKQAT 127 (161)
Q Consensus 113 fT~p~~~~~~~~~al 127 (161)
+|......+.....+
T Consensus 245 at~~~~~~~~~~~~~ 259 (311)
T cd05213 245 ATGAPHYAKIVERAM 259 (311)
T ss_pred CCCCCchHHHHHHHH
Confidence 875444334344333
No 185
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.88 E-value=0.012 Score=46.67 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=59.8
Q ss_pred eCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchh-----hhhcCC
Q 031341 28 STNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIG-----MVCDME 83 (161)
Q Consensus 28 ~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~-----~~~g~~ 83 (161)
|....|.+ -||.|+|+ |.+|..+++.+. ..|+.=+-++|.+.. |++.. .+..+.
T Consensus 11 ~g~~~q~kl~~~~VlviG~-GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLLNSHVLIIGA-GGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhcCCCEEEECC-CHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 55455543 58999995 999999999997 556654557774310 11100 011110
Q ss_pred CCCCeeee------CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341 84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt 137 (161)
....+..+ .++++.+. +.|+|||++. ++.-....+.|.++++|+|.+.
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~------~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLIN------NVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 01111111 12334453 7899999884 4444456678899999998653
No 186
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.87 E-value=0.002 Score=47.87 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=46.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
.-||.|+|+ |+|||.++..+... +++=+-+++|+.. ..++.+..+- ....+.-++++.+.+. ++|+||.+
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~-~~~~~~~~~~~~~~~~------~~DivI~a 82 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGG-VNIEAIPLEDLEEALQ------EADIVINA 82 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTG-CSEEEEEGGGHCHHHH------TESEEEE-
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCc-cccceeeHHHHHHHHh------hCCeEEEe
Confidence 358999995 99999999999855 7776667776531 1223322211 0112333577777775 79999966
Q ss_pred cC
Q 031341 114 TD 115 (161)
Q Consensus 114 T~ 115 (161)
|+
T Consensus 83 T~ 84 (135)
T PF01488_consen 83 TP 84 (135)
T ss_dssp SS
T ss_pred cC
Confidence 63
No 187
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.87 E-value=0.008 Score=49.60 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=57.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhh--cCCC-------CCCeeeeCCHHH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVC--DMEQ-------PLEIPVMSDLTM 96 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~---------~~~~~--g~~~-------~~~i~v~~dl~~ 96 (161)
+.||+|+|+ |.||..++..+... +.+++ ++|++....+ ...+. |... ..++.+++|+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 358999995 99999999998744 77766 4564321000 00111 1000 013455677765
Q ss_pred HHhcccccCCccEEEEccCchhH-----HHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031341 97 VLGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLETVS 146 (161)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~g~~vVigttg~~~e~~~ 146 (161)
+. ++|+||.+.+++.. .+.+...+..+..+++-|.+++.+++.
T Consensus 80 -~~------~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la 127 (282)
T PRK05808 80 -LK------DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELA 127 (282)
T ss_pred -hc------cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 43 79999977754333 233334444455554555577665543
No 188
>PLN00016 RNA-binding protein; Provisional
Probab=96.85 E-value=0.0073 Score=51.69 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=59.7
Q ss_pred CCCCCCeeEEEE----cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCCCCCCee-eeCCHHH---
Q 031341 30 NPPQSNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIP-VMSDLTM--- 96 (161)
Q Consensus 30 ~~~~~~ikV~Vi----Ga~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~-----~~~~g~~~~~~i~-v~~dl~~--- 96 (161)
.+...+.||.|+ |++|.+|+.+++.+.+ .+.++.++..+....... ..+..+. ..++. +..|+.+
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~ 124 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKS 124 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHh
Confidence 334456899999 9999999999999984 589998887643211100 0000010 12332 3345544
Q ss_pred HHhcccccCCccEEEEccCc--hhHHHHHHHHHHcCC-cEE
Q 031341 97 VLGSISQSKARAVVIDFTDA--STVYDNVKQATAFGM-RSV 134 (161)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p--~~~~~~~~~al~~g~-~vV 134 (161)
++. ..++|+||++... ......+..+.+.|+ ++|
T Consensus 125 ~~~----~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 125 KVA----GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred hhc----cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 443 2479999987633 334456677777887 455
No 189
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.84 E-value=0.01 Score=52.29 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=60.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
.--+|+|+| +|.+|+.+++.+. .-+++++ +++.+.. + ..+.. ..|..+ .++++++. ..|++|++
T Consensus 194 ~Gk~VvViG-~G~IG~~vA~~ak-~~Ga~Vi-V~d~dp~-r-~~~A~----~~G~~v-~~leeal~------~aDVVIta 257 (406)
T TIGR00936 194 AGKTVVVAG-YGWCGKGIAMRAR-GMGARVI-VTEVDPI-R-ALEAA----MDGFRV-MTMEEAAK------IGDIFITA 257 (406)
T ss_pred CcCEEEEEC-CCHHHHHHHHHHh-hCcCEEE-EEeCChh-h-HHHHH----hcCCEe-CCHHHHHh------cCCEEEEC
Confidence 335899999 6999999999876 5688854 5664321 1 11111 223333 35677764 78999998
Q ss_pred cCchhHH-HHHHHHHHcCCcEEEeCCCCCH-HHHHHHHHHhhh
Q 031341 114 TDASTVY-DNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCDK 154 (161)
Q Consensus 114 T~p~~~~-~~~~~al~~g~~vVigttg~~~-e~~~~L~~~A~~ 154 (161)
|-..... ......++.|.-++...- ++. =+.+.|.+++.+
T Consensus 258 TG~~~vI~~~~~~~mK~GailiN~G~-~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 258 TGNKDVIRGEHFENMKDGAIVANIGH-FDVEIDVKALEELAVE 299 (406)
T ss_pred CCCHHHHHHHHHhcCCCCcEEEEECC-CCceeCHHHHHHHHhh
Confidence 8544443 335556677665554322 221 234456555544
No 190
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.84 E-value=0.011 Score=48.34 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=57.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~-----~~g~~~~~~i~v~-- 91 (161)
.-||+|+|+ |..|..+++.|. ..|+.=..++|.+. .|++..+ +..+.....+..+
T Consensus 32 ~~~VliiG~-GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 369999996 999999999997 55776666777421 1111111 1111101122111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt 137 (161)
.+.++.+. ++|+|||++..... ...-..|.++++|+|.+.
T Consensus 110 ~i~~~~~~~~~~------~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 110 RLDDDELAALIA------GHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred cCCHHHHHHHHh------cCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence 12234443 79999999854444 445578899999999764
No 191
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.84 E-value=0.0077 Score=49.50 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=71.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCC-------------CeeeeCCHHH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-------------EIPVMSDLTM 96 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~-------------~i~v~~dl~~ 96 (161)
-.||+|-| .|++|+..++.+.+. +..++++.|+. ..|-+..++..+.... +...+++-++
T Consensus 32 g~~v~IqG-fG~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 109 (244)
T PF00208_consen 32 GKRVAIQG-FGNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE 109 (244)
T ss_dssp TCEEEEEE-SSHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence 37899999 699999999998754 99999998842 3455544443311011 1222222226
Q ss_pred HHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHH
Q 031341 97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSAL 148 (161)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L 148 (161)
++. .++|+++=+..+... .+++...++.|.++|++-. .++++..+.|
T Consensus 110 il~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L 159 (244)
T PF00208_consen 110 ILS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEIL 159 (244)
T ss_dssp GGT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHH
T ss_pred ccc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHH
Confidence 665 589999988877666 4677768899999999964 4666655433
No 192
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.83 E-value=0.0024 Score=53.90 Aligned_cols=90 Identities=16% Similarity=0.035 Sum_probs=58.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
.+++|+| +|.+|+.+++.+....+.+-+.+++++... ....+... ..++.+ +++.++++. ++|+||-+
T Consensus 126 ~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~---~~~~~~~~~~~~~av~------~aDiVita 195 (304)
T PRK07340 126 GDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR---ALGPTAEPLDGEAIPE------AVDLVVTA 195 (304)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH---hcCCeeEECCHHHHhh------cCCEEEEc
Confidence 5899999 599999999999876677778888875311 11111111 112233 578888885 79999966
Q ss_pred cCchhHHHHHHHHHHcCCcEE-EeC
Q 031341 114 TDASTVYDNVKQATAFGMRSV-VYV 137 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vV-igt 137 (161)
|+... +.+...++.|.|+. +|.
T Consensus 196 T~s~~--Pl~~~~~~~g~hi~~iGs 218 (304)
T PRK07340 196 TTSRT--PVYPEAARAGRLVVAVGA 218 (304)
T ss_pred cCCCC--ceeCccCCCCCEEEecCC
Confidence 64322 22222368888877 553
No 193
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.83 E-value=0.022 Score=49.38 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=42.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
.+.||+|+|++|.||+.+++.+.. .++++. ++|+.. .++.++++. ++|+||.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~-~~d~~~-------------------~~~~~~~~~------~aDlVila 149 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVR-ILEQDD-------------------WDRAEDILA------DAGMVIVS 149 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH-CCCeEE-EeCCCc-------------------chhHHHHHh------cCCEEEEe
Confidence 457999999679999999999874 567644 445421 024455553 68888855
Q ss_pred cCchhHHHHHHHH
Q 031341 114 TDASTVYDNVKQA 126 (161)
Q Consensus 114 T~p~~~~~~~~~a 126 (161)
+++....+.+...
T Consensus 150 vP~~~~~~~~~~l 162 (374)
T PRK11199 150 VPIHLTEEVIARL 162 (374)
T ss_pred CcHHHHHHHHHHH
Confidence 5555445555443
No 194
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.82 E-value=0.0085 Score=51.18 Aligned_cols=105 Identities=14% Similarity=0.054 Sum_probs=61.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-+|+|+| +|+||+.+++.+. .-|+++. ++|+... +... ...++. +.++++++. ..|+|+...+
T Consensus 151 ktvgIiG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~~--~~~~-----~~~~~~-~~~l~ell~------~aDiV~l~lP 213 (333)
T PRK13243 151 KTIGIIG-FGRIGQAVARRAK-GFGMRIL-YYSRTRK--PEAE-----KELGAE-YRPLEELLR------ESDFVSLHVP 213 (333)
T ss_pred CEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCC--hhhH-----HHcCCE-ecCHHHHHh------hCCEEEEeCC
Confidence 6999999 6999999999987 5578876 5675421 1111 022333 468999986 6999995553
Q ss_pred chh-HH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 116 AST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 116 p~~-~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
... .. +.....++.|.-+|--..|--. +.+.|.++.++..+-
T Consensus 214 ~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~v-d~~aL~~aL~~g~i~ 260 (333)
T PRK13243 214 LTKETYHMINEERLKLMKPTAILVNTARGKVV-DTKALVKALKEGWIA 260 (333)
T ss_pred CChHHhhccCHHHHhcCCCCeEEEECcCchhc-CHHHHHHHHHcCCeE
Confidence 222 11 2233445556544433334322 234565555555443
No 195
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.81 E-value=0.01 Score=50.20 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=57.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+|+|+| +|+||+.+++.+. .-|+++.+ +|+... + .+. ..+.++++++. .+|+|+...
T Consensus 123 ktvgIiG-~G~IG~~vA~~l~-afG~~V~~-~~r~~~--~----------~~~~~~~~~l~ell~------~aDiv~~~l 181 (303)
T PRK06436 123 KSLGILG-YGGIGRRVALLAK-AFGMNIYA-YTRSYV--N----------DGISSIYMEPEDIMK------KSDFVLISL 181 (303)
T ss_pred CEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCCCc--c----------cCcccccCCHHHHHh------hCCEEEECC
Confidence 6899999 7999999999765 55898874 454321 1 111 12568999986 699998444
Q ss_pred Cchh--HH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 115 DAST--VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 115 ~p~~--~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
|.. .. ......++.|.-+|--..|-- -+.+.|.++.++..+
T Consensus 182 -p~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~-vd~~aL~~aL~~g~i 228 (303)
T PRK06436 182 -PLTDETRGMINSKMLSLFRKGLAIINVARADV-VDKNDMLNFLRNHND 228 (303)
T ss_pred -CCCchhhcCcCHHHHhcCCCCeEEEECCCccc-cCHHHHHHHHHcCCc
Confidence 321 11 222344555544443223322 233445555555433
No 196
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.78 E-value=0.033 Score=48.51 Aligned_cols=70 Identities=20% Similarity=0.097 Sum_probs=49.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
..||+|+|.+|.||+.+++.+.+..+.++.+ +|+... ...++++.+. ++|+||-++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~-----------------~~~~~~~~v~------~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADP-----------------GSLDPATLLQ------RADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCcc-----------------ccCCHHHHhc------CCCEEEEeC
Confidence 4689999955999999999998655788664 664211 0135566664 789988777
Q ss_pred CchhHHHHHHHHHH
Q 031341 115 DASTVYDNVKQATA 128 (161)
Q Consensus 115 ~p~~~~~~~~~al~ 128 (161)
++....+.+.....
T Consensus 60 Pv~~~~~~l~~l~~ 73 (370)
T PRK08818 60 PIRHTAALIEEYVA 73 (370)
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777776654
No 197
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.76 E-value=0.014 Score=47.19 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=52.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVID 112 (161)
|++++|+| +|+||..+++.+. ..+.|++-..++.... ....+. .+..+ -.+.+++.+ ..|||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~~------l~~~i~~~~~~dA~~------~aDVVv- 65 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAAA------LGPLITGGSNEDAAA------LADVVV- 65 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHHh------hccccccCChHHHHh------cCCEEE-
Confidence 68899999 6999999999987 6678887665543211 111111 12212 245566654 699999
Q ss_pred ccCchhHHHHHHHHHH--c-CCcEEE
Q 031341 113 FTDASTVYDNVKQATA--F-GMRSVV 135 (161)
Q Consensus 113 fT~p~~~~~~~~~al~--~-g~~vVi 135 (161)
.+.|-....-+...++ . ||-||-
T Consensus 66 LAVP~~a~~~v~~~l~~~~~~KIvID 91 (211)
T COG2085 66 LAVPFEAIPDVLAELRDALGGKIVID 91 (211)
T ss_pred EeccHHHHHhHHHHHHHHhCCeEEEe
Confidence 7777666544433333 3 565553
No 198
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.76 E-value=0.014 Score=50.02 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=65.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCCC-----CCCeeeeCCHHHHHhcccccC
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQ-----PLEIPVMSDLTMVLGSISQSK 105 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~---~~~~~g~~~-----~~~i~v~~dl~~~l~~~~~~~ 105 (161)
...+|.|.||+|.+|+.+++.|+ ..|.++.|-+++....+. +.++-+.++ ..++.-+++++++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------ 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence 45899999999999999999998 789999999986433222 222222211 123344577888885
Q ss_pred CccEEEEccCch-----------------hHHHHHHHHHHcC--CcEEE
Q 031341 106 ARAVVIDFTDAS-----------------TVYDNVKQATAFG--MRSVV 135 (161)
Q Consensus 106 ~~DVVIDfT~p~-----------------~~~~~~~~al~~g--~~vVi 135 (161)
++|.|+-.+.|- +....++.|.+.+ +++|.
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence 899998766541 2234567888888 77774
No 199
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.76 E-value=0.012 Score=48.73 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=55.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhh--cCCCC-------CCeeeeCCHHHH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVC--DMEQP-------LEIPVMSDLTMV 97 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~---------~~~~--g~~~~-------~~i~v~~dl~~~ 97 (161)
.||+|+|+ |.||..++..+. ..+++++ ++|++....+. ..+. |.... ..+...+++++
T Consensus 5 ~kI~vIGa-G~mG~~iA~~la-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 80 (292)
T PRK07530 5 KKVGVIGA-GQMGNGIAHVCA-LAGYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED- 80 (292)
T ss_pred CEEEEECC-cHHHHHHHHHHH-HCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence 58999995 999999999987 5678866 56753211100 0000 10000 12445677754
Q ss_pred HhcccccCCccEEEEccCch-hH----HHHHHHHHHcCCcEEEeCCCCCHHH
Q 031341 98 LGSISQSKARAVVIDFTDAS-TV----YDNVKQATAFGMRSVVYVPHIQLET 144 (161)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~-~~----~~~~~~al~~g~~vVigttg~~~e~ 144 (161)
+. ++|+||.+.+.+ .. ...+...++.+..+++-|.+++..+
T Consensus 81 ~~------~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~ 126 (292)
T PRK07530 81 LA------DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITR 126 (292)
T ss_pred hc------CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 43 799999655322 11 2333444455555555566776543
No 200
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.76 E-value=0.0095 Score=48.25 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=40.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
||.|+|++|.+|+.+++.+.+ .+.++.++..+. . ++.-.+++++++.. .++|+||++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~r~~------~---------d~~~~~~~~~~~~~----~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-EGRVVVALTSSQ------L---------DLTDPEALERLLRA----IRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeCCcc------c---------CCCCHHHHHHHHHh----CCCCEEEECCc
Confidence 689999999999999999985 588877654321 1 11112355666652 46799998763
No 201
>PRK08328 hypothetical protein; Provisional
Probab=96.74 E-value=0.02 Score=46.46 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=60.2
Q ss_pred eCCCCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc-hhhh-----hcC
Q 031341 28 STNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED-IGMV-----CDM 82 (161)
Q Consensus 28 ~~~~~~~---~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~-~~~~-----~g~ 82 (161)
|....|. .-||.|+|+ |..|+.+++.+. ..|+.=..++|.+. .|+. ..+. ..+
T Consensus 17 ~g~~~q~~L~~~~VlIiG~-GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~ 94 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGV-GGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF 94 (231)
T ss_pred cCHHHHHHHhCCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh
Confidence 4444454 369999995 999999999997 55676666778421 1211 0000 000
Q ss_pred CCCCCeee--e------CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341 83 EQPLEIPV--M------SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 83 ~~~~~i~v--~------~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt 137 (161)
..++.+ + .++++.+. +.|+|||++. ++.-...-..|.++|+|+|.|.
T Consensus 95 --np~v~v~~~~~~~~~~~~~~~l~------~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 95 --NSDIKIETFVGRLSEENIDEVLK------GVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGA 150 (231)
T ss_pred --CCCCEEEEEeccCCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 012222 1 23344553 7899999884 4433444467899999999764
No 202
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.026 Score=47.38 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=73.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCC--------cEEEEEEecC--CCCcc-----h-hhhhc-CCCCCCeeeeCCHHHH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSH--SVGED-----I-GMVCD-MEQPLEIPVMSDLTMV 97 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~--------~eLvavvd~~--~~g~~-----~-~~~~g-~~~~~~i~v~~dl~~~ 97 (161)
.++|+++|| |.+|+.+++++..... ++++++.|.. ...+| + .++.. +..+.+- .-+++++
T Consensus 3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~--alsLdaL 79 (364)
T KOG0455|consen 3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS--ALSLDAL 79 (364)
T ss_pred cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC--cccHHHH
Confidence 589999995 9999999999986555 5789998842 11111 1 11111 0001111 1236666
Q ss_pred HhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCC--HHHHHHHHHHhh
Q 031341 98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQ--LETVSALSAFCD 153 (161)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigtt-g~~--~e~~~~L~~~A~ 153 (161)
++.+...+.+-+++|.|......+...++++.|+.+..-.- .|+ .+..++|....+
T Consensus 80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~ 138 (364)
T KOG0455|consen 80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSK 138 (364)
T ss_pred HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCC
Confidence 55544456778999999988889999999999999765432 343 344445544433
No 203
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.73 E-value=0.0044 Score=51.36 Aligned_cols=102 Identities=12% Similarity=0.191 Sum_probs=57.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----h--hcCC----C-------CCCeeeeCCHHHH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----V--CDME----Q-------PLEIPVMSDLTMV 97 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~----~--~g~~----~-------~~~i~v~~dl~~~ 97 (161)
-||+|+|+ |.||+.++..+. ..++++. ++|++... ....+ . .+.. . ...+..+++++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFA-VSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHH-hCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 37999995 999999999887 5578766 56743210 00000 0 0000 0 0124567888887
Q ss_pred HhcccccCCccEEEEccCchhH-----HHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031341 98 LGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLETVS 146 (161)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~g~~vVigttg~~~e~~~ 146 (161)
+. ++|+||.+.+.+.. ...+...+..+.-+++-|+.++.++..
T Consensus 79 ~~------~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~ 126 (288)
T PRK09260 79 VA------DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIA 126 (288)
T ss_pred hc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence 74 79999965533221 122333344444444556667776543
No 204
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.72 E-value=0.0065 Score=50.44 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=25.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
-||+|+|+ |.||+.++..+. ..+++++ ++|++
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la-~~G~~V~-l~d~~ 35 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFA-RTGYDVT-IVDVS 35 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHH-hcCCeEE-EEeCC
Confidence 47999995 999999999887 5578755 56743
No 205
>PRK07411 hypothetical protein; Validated
Probab=96.72 E-value=0.014 Score=51.06 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=59.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----C-----------Ccchhhh-----hcCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----V-----------GEDIGMV-----CDMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~-----------g~~~~~~-----~g~~~~~~i~v~-- 91 (161)
.-||.|+|+ |..|..+++.|. ..|+.=..++|.+. . |+...+. ..+.....+..+
T Consensus 38 ~~~VlivG~-GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 369999995 999999999987 77887788888431 1 1111110 011101122212
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt 137 (161)
.+..+.+. +.|+|||++..... .-.-..|.+.++|.|.|.
T Consensus 116 ~~~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 160 (390)
T PRK07411 116 RLSSENALDILA------PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGS 160 (390)
T ss_pred ccCHHhHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 12234453 79999999865444 444478899999999764
No 206
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.71 E-value=0.033 Score=51.95 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=59.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCee--eeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g~~~~~~~g~~~~~~i~--v~~dl~~~l~~~~~~~~~DVVID 112 (161)
-||+|+| .|.||..+++.+.... ..+ +-++|++.. +..... +.++. ..+++++++. ++|+||.
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~-V~~~d~~~~--~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVil 69 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLARE-VVAVDRRAK--SLELAV----SLGVIDRGEEDLAEAVS------GADVIVL 69 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCCE-EEEEECChh--HHHHHH----HCCCCCcccCCHHHHhc------CCCEEEE
Confidence 5799999 6999999999987542 235 445675431 111111 22322 3456777764 7899997
Q ss_pred ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHHh
Q 031341 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC 152 (161)
Q Consensus 113 fT~p~~~~~~~~~al~--~g~~vVigttg~~~e~~~~L~~~A 152 (161)
+++|+...+.+..... ....+|+-..+......+.+.+..
T Consensus 70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 7766655555443332 223355544445544555565553
No 207
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=96.71 E-value=0.011 Score=48.71 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=27.7
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
|.|.|++|.+|+.+++.+.+ .|.++++++|+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHh-CCCceEEEecCC
Confidence 78999999999999999985 478888888864
No 208
>PLN02522 ATP citrate (pro-S)-lyase
Probab=96.70 E-value=0.01 Score=54.85 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=57.0
Q ss_pred CCCeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHH-HHHHHcCCcEEEe-CCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNV-KQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 85 ~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~-~~al~~g~~vVig-ttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
..++|||++++|+.++ ..++|+.|.|.+|..+.+-+ +.+.+.|++.++- |.|+.+.+..+|.++|++.++-.-|
T Consensus 60 ~~~iPVf~tv~eA~~~---~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIG 135 (608)
T PLN02522 60 EIAIPVHGSIEAACKA---HPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIG 135 (608)
T ss_pred eeCccccchHHHHHHh---CCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEEC
Confidence 4689999999999874 23789999999988887655 4555569876644 5588877788999999998776544
No 209
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.68 E-value=0.014 Score=51.60 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.++|||+|+| +|+||.-++..+.. +++++ ++|.
T Consensus 4 ~~~mkI~vIG-lGyvGlpmA~~la~--~~~V~-g~D~ 36 (425)
T PRK15182 4 IDEVKIAIIG-LGYVGLPLAVEFGK--SRQVV-GFDV 36 (425)
T ss_pred CCCCeEEEEC-cCcchHHHHHHHhc--CCEEE-EEeC
Confidence 3458999999 79999999998764 58866 5774
No 210
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.68 E-value=0.018 Score=49.66 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=57.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----C-----------Ccchhhhh-----cCCCCCCeeee---
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----V-----------GEDIGMVC-----DMEQPLEIPVM--- 91 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~-----------g~~~~~~~-----g~~~~~~i~v~--- 91 (161)
-||.|+|+ |..|..+++.|. ..|+.=..++|.+. . |++..+.+ .+.....+..+
T Consensus 29 ~~VlivG~-GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 29 AKVAVIGA-GGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred CeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 69999995 999999999987 77887788888431 1 11111100 11001122111
Q ss_pred ---CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341 92 ---SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY 136 (161)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig 136 (161)
++..+.+. ++|+|||++..... .-.-..|.++++|+|.|
T Consensus 107 i~~~~~~~~~~------~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 107 LTWSNALDELR------DADVILDGSDNFDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred cCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 12234553 79999999854333 34457889999999976
No 211
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.67 E-value=0.0099 Score=47.21 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=27.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
.+|+|+| .|+||+.+++.+. ..+.+++ ++|++
T Consensus 29 k~v~I~G-~G~vG~~~A~~L~-~~G~~Vv-v~D~~ 60 (200)
T cd01075 29 KTVAVQG-LGKVGYKLAEHLL-EEGAKLI-VADIN 60 (200)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEcCC
Confidence 6899999 5999999999987 5689998 77754
No 212
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.65 E-value=0.022 Score=46.76 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=52.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC---CCC--CeeeeCCHHHHHhcccccCCccEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---QPL--EIPVMSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~---~~~--~i~v~~dl~~~l~~~~~~~~~DVV 110 (161)
|||+|+|+ |.||..++..+.+ .+.++..+..+...-..+.+ .|.. .+. .+..+++.+++ . .+|+|
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~------~~d~v 70 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNE-NGLRLEDGEITVPVLAADDPAEL-G------PQDLV 70 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHH-cCCcccCCceeecccCCCChhHc-C------CCCEE
Confidence 58999995 9999999999874 46776654432211001100 0110 000 11224555544 3 79999
Q ss_pred EEccCchhHHHHHH---HHHHcCCcEEEeCCCCCH
Q 031341 111 IDFTDASTVYDNVK---QATAFGMRSVVYVPHIQL 142 (161)
Q Consensus 111 IDfT~p~~~~~~~~---~al~~g~~vVigttg~~~ 142 (161)
|-++.+....+.+. ..+..+..+|+-..|+..
T Consensus 71 ila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~ 105 (304)
T PRK06522 71 ILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH 105 (304)
T ss_pred EEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence 96765554444333 333344567665567753
No 213
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.63 E-value=0.0087 Score=50.35 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=55.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc-
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT- 114 (161)
|||.|.|++|..|+.+.+.+. ++.++++..... .++.-.+.+.+++.+ .+||+||.+.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA 59 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA 59 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence 579999999999999999876 888888765532 122223456777764 6899999754
Q ss_pred ---------Cch--------hHHHHHHHHHHcCCcEE
Q 031341 115 ---------DAS--------TVYDNVKQATAFGMRSV 134 (161)
Q Consensus 115 ---------~p~--------~~~~~~~~al~~g~~vV 134 (161)
.|+ +....++.|-+.|.++|
T Consensus 60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV 96 (281)
T COG1091 60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV 96 (281)
T ss_pred ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence 122 22345678888998887
No 214
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.61 E-value=0.0047 Score=52.26 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=55.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+|+|+| +|.||+.+++.+....+.+=+-+++++.. .....+.... ....+.+++++++++. ++|+|+-+|
T Consensus 126 ~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-~g~~~~~~~~~~~av~------~aDIVi~aT 197 (314)
T PRK06141 126 SRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-QGFDAEVVTDLEAAVR------QADIISCAT 197 (314)
T ss_pred ceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-cCCceEEeCCHHHHHh------cCCEEEEee
Confidence 5899999 59999999997776555666667786431 1122221110 0113566789998885 799998555
Q ss_pred CchhHHHHH-HHHHHcCCcEEE
Q 031341 115 DASTVYDNV-KQATAFGMRSVV 135 (161)
Q Consensus 115 ~p~~~~~~~-~~al~~g~~vVi 135 (161)
+.. .+.+ ...++.|.++.+
T Consensus 198 ~s~--~pvl~~~~l~~g~~i~~ 217 (314)
T PRK06141 198 LST--EPLVRGEWLKPGTHLDL 217 (314)
T ss_pred CCC--CCEecHHHcCCCCEEEe
Confidence 432 2222 245688887653
No 215
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.60 E-value=0.03 Score=48.34 Aligned_cols=91 Identities=22% Similarity=0.197 Sum_probs=56.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---CCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~---~dl~~~l~~~~~~~~~DVVID 112 (161)
=+|+|+|+ |..|...++.+. .-+.+++++-.+... .....-+|. +..+. .+.-+.+. ..+|++||
T Consensus 168 ~~V~I~G~-GGlGh~avQ~Ak-a~ga~Via~~~~~~K-~e~a~~lGA----d~~i~~~~~~~~~~~~-----~~~d~ii~ 235 (339)
T COG1064 168 KWVAVVGA-GGLGHMAVQYAK-AMGAEVIAITRSEEK-LELAKKLGA----DHVINSSDSDALEAVK-----EIADAIID 235 (339)
T ss_pred CEEEEECC-cHHHHHHHHHHH-HcCCeEEEEeCChHH-HHHHHHhCC----cEEEEcCCchhhHHhH-----hhCcEEEE
Confidence 37999996 999998888765 445998876654321 112222222 22222 12223332 23999999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341 113 FTDASTVYDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vVigtt 138 (161)
+..+.+..+.++.....|.-+++|-+
T Consensus 236 tv~~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 236 TVGPATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CCChhhHHHHHHHHhcCCEEEEECCC
Confidence 99855556666666677777778765
No 216
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=96.59 E-value=0.029 Score=42.59 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=69.5
Q ss_pred eEEEEcCCCH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 37 KVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 37 kV~ViGa~G~---mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
+|+|+|+|-+ -+-.+.+.|+ ..|+++..|- +...| .+++ |-++|.|+.++-. .+|+|.-|
T Consensus 18 ~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPVN-P~~~~---~eiL------G~k~y~sL~dIpe------~IDiVdvF 80 (140)
T COG1832 18 TIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPVN-PKLAG---EEIL------GEKVYPSLADIPE------PIDIVDVF 80 (140)
T ss_pred eEEEEecCCCCCccHHHHHHHHH-HCCCEEEeeC-cccch---HHhc------CchhhhcHHhCCC------CCcEEEEe
Confidence 6999998764 5556777776 7789988553 22222 3443 5578999999874 89998889
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVS 146 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~ 146 (161)
-.|+.+.+.++.+++.+..++=.-.|...++..
T Consensus 81 R~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea~ 113 (140)
T COG1832 81 RRSEAAPEVAREALEKGAKVVWLQLGIRNEEAA 113 (140)
T ss_pred cChhhhHHHHHHHHhhCCCeEEEecCcCCHHHH
Confidence 999999999999999999988766676444433
No 217
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=96.59 E-value=0.016 Score=51.18 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
.+||.|.|++|.+|+.+++.|.+ .+.+++++.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~ld 151 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIVID 151 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHH-CCCEEEEEe
Confidence 38999999999999999999985 578988654
No 218
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.57 E-value=0.017 Score=47.84 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=50.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
|||.|.|++|.+|+.+++.+.+. + ++++ +++... . + ..++.-...++++++. .++|+||.+..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-~----~-----~~Dl~d~~~~~~~~~~----~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-D----Y-----CGDFSNPEGVAETVRK----IRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-c----c-----cCCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence 58999999999999999998754 4 5554 443210 0 0 1122112244555542 36999998752
Q ss_pred ----------chh--------HHHHHHHHHHcCCcEEEeC
Q 031341 116 ----------AST--------VYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 116 ----------p~~--------~~~~~~~al~~g~~vVigt 137 (161)
|.. ....++.|.++|+++|.-.
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~S 103 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYS 103 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 111 1235567778888877433
No 219
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.56 E-value=0.0033 Score=54.22 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=30.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
+||+|.| .||+||.+.|.+.+.+++|+|++-|
T Consensus 3 ~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 3 ITVGING-FGPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred eEEEEEC-CChHHHHHHHHHHhcCCcEEEEecC
Confidence 7999999 6999999999988788999999987
No 220
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.56 E-value=0.0052 Score=47.66 Aligned_cols=63 Identities=24% Similarity=0.174 Sum_probs=40.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.+|+|+| +|++|+.+++.+. .=|+++. ++|+... +..... ..++ -+.++++++. ..|+|+...
T Consensus 37 ~tvgIiG-~G~IG~~vA~~l~-~fG~~V~-~~d~~~~--~~~~~~----~~~~-~~~~l~ell~------~aDiv~~~~ 99 (178)
T PF02826_consen 37 KTVGIIG-YGRIGRAVARRLK-AFGMRVI-GYDRSPK--PEEGAD----EFGV-EYVSLDELLA------QADIVSLHL 99 (178)
T ss_dssp SEEEEES-TSHHHHHHHHHHH-HTT-EEE-EEESSCH--HHHHHH----HTTE-EESSHHHHHH------H-SEEEE-S
T ss_pred CEEEEEE-EcCCcCeEeeeee-cCCceeE-EecccCC--hhhhcc----cccc-eeeehhhhcc------hhhhhhhhh
Confidence 7999999 6999999999987 6688866 4554321 111011 2233 3569999996 699988544
No 221
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.56 E-value=0.018 Score=47.75 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=55.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhh--cCC------CCCC-eeeeCCHHHH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVC--DME------QPLE-IPVMSDLTMV 97 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~---------~~~~~--g~~------~~~~-i~v~~dl~~~ 97 (161)
-||+|+| .|.||+.++..+. ..++++. ++|++....+ ...+. |.. ...+ +.+.++.+ +
T Consensus 5 ~~V~vIG-~G~mG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 80 (295)
T PLN02545 5 KKVGVVG-AGQMGSGIAQLAA-AAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE-E 80 (295)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH-H
Confidence 5799999 5999999999987 4578765 6674321100 00111 000 0011 23445654 4
Q ss_pred HhcccccCCccEEEEccC--chhHHHH---HHHHHHcCCcEEEeCCCCCHHHHHH
Q 031341 98 LGSISQSKARAVVIDFTD--ASTVYDN---VKQATAFGMRSVVYVPHIQLETVSA 147 (161)
Q Consensus 98 l~~~~~~~~~DVVIDfT~--p~~~~~~---~~~al~~g~~vVigttg~~~e~~~~ 147 (161)
++ ++|+||.+.. |+.-... +...++.+.-+++-|.+++..++.+
T Consensus 81 ~~------~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~ 129 (295)
T PLN02545 81 LR------DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS 129 (295)
T ss_pred hC------CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 43 7999997664 4332232 3333344443444566787666443
No 222
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.56 E-value=0.027 Score=48.78 Aligned_cols=93 Identities=22% Similarity=0.296 Sum_probs=57.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh----h-cCCCCCCeeee---
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV----C-DMEQPLEIPVM--- 91 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~----~-g~~~~~~i~v~--- 91 (161)
-||.|+|+ |..|+.+++.|. ..|+.=.-++|.+. .|++..+. + .+.....+..+
T Consensus 136 ~~VlvvG~-GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 136 ARVLLIGA-GGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred CcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 68999995 999999999987 66676566778531 12211111 0 01001112111
Q ss_pred ---CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEe
Q 031341 92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 136 (161)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVig 136 (161)
.++++.+. ++|+|||++. +..-...-..|.++++|+|.+
T Consensus 214 ~~~~~~~~~~~------~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 214 VTSDNVEALLQ------DVDVVVDGADNFPTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred CChHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 12334553 7999999985 444445557899999999966
No 223
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.56 E-value=0.022 Score=49.72 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=58.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~-- 91 (161)
..||.|+|+ |..|..+++.|. ..|+.=+.++|.+. .|+...+. ..+.....+..+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 369999995 999999999997 66777777888421 12111111 111101122111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031341 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVigt 137 (161)
.+.++.+. ++|+|||++. +..-...-..|.++++|+|.|.
T Consensus 120 ~i~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 120 RLDPSNAVELFS------QYDLILDGTDNFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred cCChhHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 12234453 7999999984 4444455588999999999764
No 224
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.53 E-value=0.0049 Score=52.40 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=59.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVI 111 (161)
.-+++|+| +|.+|+.+++.+....+++-+.+++++.. .+...+... ...+ +..++++++++. ++|+|+
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~--~~~g~~v~~~~~~~~av~------~aDiVv 199 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLS--SLLGIDVTAATDPRAAMS------GADIIV 199 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHH--hhcCceEEEeCCHHHHhc------cCCEEE
Confidence 35899999 59999999999986678888889987531 112222111 1123 344788999885 799999
Q ss_pred EccCchhHHHHH-HHHHHcCCcEE-Ee
Q 031341 112 DFTDASTVYDNV-KQATAFGMRSV-VY 136 (161)
Q Consensus 112 DfT~p~~~~~~~-~~al~~g~~vV-ig 136 (161)
-+|+. .. +.+ ...++.|.++. +|
T Consensus 200 taT~s-~~-p~i~~~~l~~g~~i~~vg 224 (326)
T TIGR02992 200 TTTPS-ET-PILHAEWLEPGQHVTAMG 224 (326)
T ss_pred EecCC-CC-cEecHHHcCCCcEEEeeC
Confidence 66633 22 222 34567888776 44
No 225
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.52 E-value=0.025 Score=49.15 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=61.6
Q ss_pred eCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----C-----------Ccchhh-----hhcCC
Q 031341 28 STNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----V-----------GEDIGM-----VCDME 83 (161)
Q Consensus 28 ~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~-----------g~~~~~-----~~g~~ 83 (161)
|....|.+ -||.|+|+ |.+|..+++.+. ..|+.=+.++|.+. . |++..+ +..+.
T Consensus 31 ~g~~~q~~l~~~~VliiG~-GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 31 FGIEQQERLHNARVLVIGA-GGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred hCHHHHHHhcCCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 44445543 69999995 999999999997 55665566788431 1 111111 00111
Q ss_pred CCCCeeee------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031341 84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigt 137 (161)
....+..+ .++++.+. ++|+|||++..... .-.-..|.++++|+|.+.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~ 163 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGT 163 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 01122121 23445554 79999999855444 444578999999999664
No 226
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.51 E-value=0.015 Score=45.42 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=49.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-+|+|+| +|..|+.++.+|. +.+++++-........++..+-. |..+ .+++|+.. ..|+|+-.+
T Consensus 5 k~IAViG-yGsQG~a~AlNLr-DSG~~V~Vglr~~s~s~~~A~~~------Gf~v-~~~~eAv~------~aDvV~~L~- 68 (165)
T PF07991_consen 5 KTIAVIG-YGSQGHAHALNLR-DSGVNVIVGLREGSASWEKAKAD------GFEV-MSVAEAVK------KADVVMLLL- 68 (165)
T ss_dssp SEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTCHHHHHHHHT------T-EC-CEHHHHHH------C-SEEEE-S-
T ss_pred CEEEEEC-CChHHHHHHHHHH-hCCCCEEEEecCCCcCHHHHHHC------CCee-ccHHHHHh------hCCEEEEeC-
Confidence 5799999 7999999999986 77898876665432123333333 3344 47888875 799988444
Q ss_pred chhH-----HHHHHHHHHcCCcEEE
Q 031341 116 ASTV-----YDNVKQATAFGMRSVV 135 (161)
Q Consensus 116 p~~~-----~~~~~~al~~g~~vVi 135 (161)
|+.. .+.+.-.++.|.-++.
T Consensus 69 PD~~q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 69 PDEVQPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp -HHHHHHHHHHHHHHHS-TT-EEEE
T ss_pred ChHHHHHHHHHHHHhhCCCCCEEEe
Confidence 5433 2455566777776654
No 227
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.51 E-value=0.011 Score=46.38 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=60.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhhhhcCC-CCCCeeeeCCHHHHHhcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGMVCDME-QPLEIPVMSDLTMVLGSI 101 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------~~g~------~~~~~~g~~-~~~~i~v~~dl~~~l~~~ 101 (161)
|||+|+| .|++|--++..+. ..|++++| +|.+ ..|. .+.+++... ......+++|.++++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred CEEEEEC-CCcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 7999999 7999999998876 77898775 5521 0111 112221100 0234567788888775
Q ss_pred cccCCccEEEEcc-Cch------------hHHHHHHHHHHcCCcEEEeCC---CCCHHHH-HHHHHHh
Q 031341 102 SQSKARAVVIDFT-DAS------------TVYDNVKQATAFGMRSVVYVP---HIQLETV-SALSAFC 152 (161)
Q Consensus 102 ~~~~~~DVVIDfT-~p~------------~~~~~~~~al~~g~~vVigtt---g~~~e~~-~~L~~~A 152 (161)
++|+++.+- +|. .+.+.+...++.+.-+|+.+| |.+++.. +.|++..
T Consensus 76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 689888543 231 234455566677788888876 5555443 3344433
No 228
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.50 E-value=0.0054 Score=52.16 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=56.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
-+++|+| +|.+|+.++..+....+++-+.+++++.. .+...+... +..++ ..++|+++++. ++|+||-
T Consensus 133 ~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~--~~~g~~v~~~~d~~~al~------~aDiVi~ 203 (330)
T PRK08291 133 SRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLR--AELGIPVTVARDVHEAVA------GADIIVT 203 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHh--hccCceEEEeCCHHHHHc------cCCEEEE
Confidence 5899999 59999999999886667888889987531 111211111 12233 44789999885 7899986
Q ss_pred ccCchhHHHHHH-HHHHcCCcEE
Q 031341 113 FTDASTVYDNVK-QATAFGMRSV 134 (161)
Q Consensus 113 fT~p~~~~~~~~-~al~~g~~vV 134 (161)
.|+. .. +.+. ..++.|.|+.
T Consensus 204 aT~s-~~-p~i~~~~l~~g~~v~ 224 (330)
T PRK08291 204 TTPS-EE-PILKAEWLHPGLHVT 224 (330)
T ss_pred eeCC-CC-cEecHHHcCCCceEE
Confidence 6532 22 2222 2367777765
No 229
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.48 E-value=0.0085 Score=47.83 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLv 64 (161)
|||+|+|++|+||+.+++.+. ..|+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~-~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILD-DNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHH-hCCCEEE
Confidence 589999999999999999885 6688753
No 230
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=96.47 E-value=0.019 Score=53.02 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
+++||.|.|++|.+|+.+++.+.+..+.+++++..
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 35899999999999999999998767899998754
No 231
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.47 E-value=0.015 Score=42.86 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=26.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.||+|+|+ |.+|..+++.|. ..|+.=.-++|.
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~-~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLA-RSGVGKITLVDD 34 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHH-HHTTSEEEEEES
T ss_pred CEEEEECc-CHHHHHHHHHHH-HhCCCceeecCC
Confidence 68999995 999999999998 557766668885
No 232
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.44 E-value=0.018 Score=48.56 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=64.2
Q ss_pred eeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchh-----h
Q 031341 23 RFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIG-----M 78 (161)
Q Consensus 23 ~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~----------------g~~~~-----~ 78 (161)
|-|+-|...++.+ -||.|+|+ |..|.++++.|. ..|+.=+.++|.+.. |++-. .
T Consensus 4 RQl~~~G~eaq~kL~~s~VLIvG~-gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~ 81 (286)
T cd01491 4 RQLYVLGHEAMKKLQKSNVLISGL-GGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQAR 81 (286)
T ss_pred cceeccCHHHHHHHhcCcEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHH
Confidence 4466666666654 68999995 999999999997 888988889995321 11100 0
Q ss_pred hhcCCCCCCeeeeC-CH-HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031341 79 VCDMEQPLEIPVMS-DL-TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 79 ~~g~~~~~~i~v~~-dl-~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt 138 (161)
+..+.....+.+++ .+ ++.+. +.|+||+...+... ...-+.|.++++++|.+-+
T Consensus 82 L~eLNp~V~V~~~~~~~~~~~l~------~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~ 138 (286)
T cd01491 82 LAELNPYVPVTVSTGPLTTDELL------KFQVVVLTDASLEDQLKINEFCHSPGIKFISADT 138 (286)
T ss_pred HHHHCCCCEEEEEeccCCHHHHh------cCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 11111011222222 11 33443 67888876644333 3455778888888876543
No 233
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.42 E-value=0.019 Score=46.21 Aligned_cols=101 Identities=22% Similarity=0.287 Sum_probs=58.4
Q ss_pred eCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhhh-----cCC
Q 031341 28 STNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMVC-----DME 83 (161)
Q Consensus 28 ~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~~-----g~~ 83 (161)
|....|.+ .||.|+|+ |..|..+++.|. ..|+.-..++|.+. .|++..+.+ .+.
T Consensus 11 ~g~~~q~~L~~~~VlivG~-GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 11 IGEEGQEKLKNARVLVVGA-GGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred cCHHHHHHHhCCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 44445543 69999995 999999999997 55777777887431 111100000 000
Q ss_pred CCCCeeee------CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEe
Q 031341 84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 136 (161)
Q Consensus 84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVig 136 (161)
....+..+ .++++.+. ++|+||+++. +..-...-+.|.++++|+|.+
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~------~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIA------GYDLVLDCTDNFATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHh------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00112111 22334443 6888888774 444344557788888888864
No 234
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.42 E-value=0.026 Score=47.91 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=41.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.+|+|+| +|+||+.+++.+. .=|+++.+ +++.....+ +.. . ..-..++++++. .+|+|+...
T Consensus 137 ~tvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~~~~~~~~-----~~~-~--~~~~~~l~e~l~------~aDvvv~~l 198 (312)
T PRK15469 137 FTIGILG-AGVLGSKVAQSLQ-TWGFPLRC-WSRSRKSWP-----GVQ-S--FAGREELSAFLS------QTRVLINLL 198 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCCCCCC-----Cce-e--ecccccHHHHHh------cCCEEEECC
Confidence 6899999 7999999999987 56898875 554321100 100 0 111358899986 799999443
No 235
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.41 E-value=0.025 Score=48.68 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=44.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-+|+|+| +|.||+.+++.+. .-|+++++..++ ....+... ..|..+ .++++++. .+|+|+ ...
T Consensus 17 KtVGIIG-~GsIG~amA~nL~-d~G~~ViV~~r~-~~s~~~A~------~~G~~v-~sl~Eaak------~ADVV~-llL 79 (335)
T PRK13403 17 KTVAVIG-YGSQGHAQAQNLR-DSGVEVVVGVRP-GKSFEVAK------ADGFEV-MSVSEAVR------TAQVVQ-MLL 79 (335)
T ss_pred CEEEEEe-EcHHHHHHHHHHH-HCcCEEEEEECc-chhhHHHH------HcCCEE-CCHHHHHh------cCCEEE-EeC
Confidence 5799999 7999999999986 678998765443 11111111 224443 48999885 799988 444
Q ss_pred ch
Q 031341 116 AS 117 (161)
Q Consensus 116 p~ 117 (161)
|+
T Consensus 80 Pd 81 (335)
T PRK13403 80 PD 81 (335)
T ss_pred CC
Confidence 43
No 236
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.40 E-value=0.03 Score=48.04 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=29.9
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
+..+||.|.|++|.+|+.+++.|.+ .+.++.++..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKA-EGHYIIASDW 53 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHh-CCCEEEEEEe
Confidence 3458999999999999999999985 5889887764
No 237
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.39 E-value=0.047 Score=49.00 Aligned_cols=108 Identities=10% Similarity=0.059 Sum_probs=62.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCC-------C------CcchhhhhcCCCCCCeeeeCCHHHHHhc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS-------V------GEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavvd~~~-------~------g~~~~~~~g~~~~~~i~v~~dl~~~l~~ 100 (161)
||||+|+| +|++|-.++-.+.+. .+++++++ |... . .....+++.........+++++++++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~- 77 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA- 77 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh-
Confidence 68999999 699999999988765 37888766 5210 0 111222221100112567788887774
Q ss_pred ccccCCccEEEEcc-Cchh-----------------HHHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHH
Q 031341 101 ISQSKARAVVIDFT-DAST-----------------VYDNVKQATAFGMRSVVYVP---HIQLETVSALSA 150 (161)
Q Consensus 101 ~~~~~~~DVVIDfT-~p~~-----------------~~~~~~~al~~g~~vVigtt---g~~~e~~~~L~~ 150 (161)
++|++|.+- +|.. +.+.+...++.|.-||+.+| |.+.+-.+.|.+
T Consensus 78 -----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 78 -----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred -----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 789887543 3431 11223344456777777776 445444444443
No 238
>PLN02206 UDP-glucuronate decarboxylase
Probab=96.37 E-value=0.028 Score=49.78 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=53.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCee-eeCC-HHHHHhcccccCCccEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIP-VMSD-LTMVLGSISQSKARAVVI 111 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g--~~~~~~~g~~~~~~i~-v~~d-l~~~l~~~~~~~~~DVVI 111 (161)
+||.|.|++|.+|+.+++.|.+ .+.+++++ |+...+ .+...... ..++. +..| .++.+. ++|+||
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l-d~~~~~~~~~~~~~~~---~~~~~~i~~D~~~~~l~------~~D~Vi 188 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV-DNFFTGRKENVMHHFS---NPNFELIRHDVVEPILL------EVDQIY 188 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHH-CcCEEEEE-eCCCccchhhhhhhcc---CCceEEEECCccChhhc------CCCEEE
Confidence 7999999999999999999985 58888865 432111 11111111 11221 1222 333442 689999
Q ss_pred EccC---ch---------------hHHHHHHHHHHcCCcEEEe
Q 031341 112 DFTD---AS---------------TVYDNVKQATAFGMRSVVY 136 (161)
Q Consensus 112 DfT~---p~---------------~~~~~~~~al~~g~~vVig 136 (161)
.+.. |. .....+.+|.++|+++|.-
T Consensus 189 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~ 231 (442)
T PLN02206 189 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 231 (442)
T ss_pred EeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 8763 11 1134456788889887743
No 239
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.37 E-value=0.09 Score=44.76 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=26.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH 70 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~ 70 (161)
++.||+|+|+ |.||..++..+. ..++ + +.++|..
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la-~~gl~~-i~LvDi~ 39 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIV-LKNLGD-VVLFDIV 39 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHH-hCCCCe-EEEEeCC
Confidence 3469999995 999999988776 5564 7 7789953
No 240
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.34 E-value=0.04 Score=46.37 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=56.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--C---------CCCeeeeCCHHHHHhcccc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--Q---------PLEIPVMSDLTMVLGSISQ 103 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~--~---------~~~i~v~~dl~~~l~~~~~ 103 (161)
|+||+|+| .|.||..++..+.+ .+.++.. +++...-..+.+ .|.. . ...+...++. +.+
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~-~G~~V~~-~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 71 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAA-AGADVTL-IGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AAL----- 71 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHh-cCCcEEE-EecHHHHHHHHh-cCceeecCCCcceecccceeEeccCh-hhc-----
Confidence 58999999 59999999999874 4788765 443211000000 0100 0 0012234455 333
Q ss_pred cCCccEEEEccCchhHHHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031341 104 SKARAVVIDFTDASTVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCD 153 (161)
Q Consensus 104 ~~~~DVVIDfT~p~~~~~~~~---~al~~g~~vVigttg~~~e~~~~L~~~A~ 153 (161)
.++|+||.++.+....+.+. ..+..+..++.-+.|+... +.|.+...
T Consensus 72 -~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~--~~l~~~~~ 121 (341)
T PRK08229 72 -ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA--DVLRAALP 121 (341)
T ss_pred -cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH--HHHHHhCC
Confidence 37999997765544444333 3334445455555677532 23444433
No 241
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.03 Score=47.86 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=26.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.-||+|+|+ |-||+.++..+. ..|+++. ++|+
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a-~aG~~V~-l~D~ 38 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARAL-AHGLDVV-AWDP 38 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeC
Confidence 357999995 999999999887 6699876 6775
No 242
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.31 E-value=0.032 Score=46.77 Aligned_cols=72 Identities=24% Similarity=0.215 Sum_probs=44.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchh--------hhh--cCCC-------CCCeeeeCCHHH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIG--------MVC--DMEQ-------PLEIPVMSDLTM 96 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~--------~~~--g~~~-------~~~i~v~~dl~~ 96 (161)
++||+|+| .|.||..++..+.. .|.++. ++|++... .... .+. |... ...+.+..|+++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~-~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~ 78 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFAR-AGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD 78 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHH-CCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence 35899999 59999999999874 578765 66753210 0000 011 1000 012456788888
Q ss_pred HHhcccccCCccEEEEccC
Q 031341 97 VLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~ 115 (161)
++. ++|+|+...+
T Consensus 79 a~~------~ad~Vi~avp 91 (308)
T PRK06129 79 AVA------DADYVQESAP 91 (308)
T ss_pred hhC------CCCEEEECCc
Confidence 874 7999995553
No 243
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.31 E-value=0.048 Score=45.53 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=55.7
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-E
Q 031341 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-V 109 (161)
Q Consensus 31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-V 109 (161)
++..+-++.|.|||+++|+++++.+. ..++.|+-+..+.. ++.++. .++++... ..++ .
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~~---kL~~la-----------~~l~~~~~-----v~v~vi 61 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLA-RRGYNLILVARRED---KLEALA-----------KELEDKTG-----VEVEVI 61 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcHH---HHHHHH-----------HHHHHhhC-----ceEEEE
Confidence 34456789999999999999999987 77899886666421 111111 12222211 1234 3
Q ss_pred EEEccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031341 110 VIDFTDASTVYDNVKQATAF--GMRSVVYVP 138 (161)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~--g~~vVigtt 138 (161)
-+|.|.|+..........+. .+.++|=..
T Consensus 62 ~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 62 PADLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred ECcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 56778887777666665665 577776544
No 244
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.30 E-value=0.047 Score=45.00 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=52.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~------~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV 109 (161)
|||+|+|+ |.||..++..+.+ .+.++..+..... .|.......+- ........++.+++. ..+|+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~------~~~d~ 71 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLE-AGRDVTFLVRPKRAKALRERGLVIRSDHGD-AVVPGPVITDPEELT------GPFDL 71 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHH-CCCceEEEecHHHHHHHHhCCeEEEeCCCe-EEecceeecCHHHcc------CCCCE
Confidence 58999995 9999999999874 4677654443110 01111000000 001112345666654 37899
Q ss_pred EEEccCchhHHHHHHH---HHHcCCcEEEeCCCCC
Q 031341 110 VIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQ 141 (161)
Q Consensus 110 VIDfT~p~~~~~~~~~---al~~g~~vVigttg~~ 141 (161)
+|.++.+....+.+.. .+..+..+|+-..|+.
T Consensus 72 vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 72 VILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 9967655444444433 3334555555445775
No 245
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.30 E-value=0.024 Score=51.31 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=59.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-+|+|+| +|+||+.+++.+. .-++++.+ +|+... .+.. .+.++...+++++++. .+|+|+-..+
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~lP 202 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAK-AFGMKVLA-YDPYIS-PERA------EQLGVELVDDLDELLA------RADFITVHTP 202 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHH------HhcCCEEcCCHHHHHh------hCCEEEEccC
Confidence 5899999 7999999999987 45888764 564311 1111 1235555578999986 7999985543
Q ss_pred chhHH-----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 116 ASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 116 p~~~~-----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
..... +.....++.|.-+|--..|--.+ .+.|.++-++..+
T Consensus 203 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd-e~aL~~aL~~g~i 248 (525)
T TIGR01327 203 LTPETRGLIGAEELAKMKKGVIIVNCARGGIID-EAALYEALEEGHV 248 (525)
T ss_pred CChhhccCcCHHHHhcCCCCeEEEEcCCCceeC-HHHHHHHHHcCCe
Confidence 22111 12233445554444322232222 2345555555444
No 246
>PLN02778 3,5-epimerase/4-reductase
Probab=96.29 E-value=0.048 Score=45.38 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLv 64 (161)
...+||.|.|++|.+|+.+++.+.+ .+.+++
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~ 37 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQE-QGIDFH 37 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence 3448999999999999999999874 467765
No 247
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.29 E-value=0.045 Score=46.70 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=57.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee-CCH
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM-SDL 94 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~-~dl 94 (161)
||.|+|+ |..|.++++.|. ..|+.=+-++|.+. .|+.-.+. ..+.....+..+ .++
T Consensus 1 kVlIVGa-GGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANI 78 (312)
T ss_pred CEEEECC-CHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 6999995 999999999997 67888888998431 12111111 011001112111 111
Q ss_pred ------HHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEe-CCCC
Q 031341 95 ------TMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVY-VPHI 140 (161)
Q Consensus 95 ------~~~l~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVig-ttg~ 140 (161)
++.+. +.|+||++..+.... ..-..|.++++|+|-+ +.|+
T Consensus 79 ~~~~~~~~f~~------~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~ 126 (312)
T cd01489 79 KDPDFNVEFFK------QFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGF 126 (312)
T ss_pred CCccchHHHHh------cCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcc
Confidence 23443 789999887554444 4447889999999853 4443
No 248
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.28 E-value=0.077 Score=44.09 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=66.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-----eCCHHHHHhcccccCCccE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-----MSDLTMVLGSISQSKARAV 109 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-----~~dl~~~l~~~~~~~~~DV 109 (161)
+++|.|+|. =.=++.+++.+...+...++..... .|.+..+.. ....+ ...+.+.+.+ .++|.
T Consensus 2 ~~~ilvlGG-T~Dar~la~~L~~~~~~~~~ss~t~--~g~~l~~~~-----~~~~~~G~l~~e~l~~~l~e----~~i~l 69 (257)
T COG2099 2 MMRILLLGG-TSDARALAKKLAAAPVDIILSSLTG--YGAKLAEQI-----GPVRVGGFLGAEGLAAFLRE----EGIDL 69 (257)
T ss_pred CceEEEEec-cHHHHHHHHHhhccCccEEEEEccc--ccccchhcc-----CCeeecCcCCHHHHHHHHHH----cCCCE
Confidence 688999996 5678999999998885544433321 122222111 11111 1234455653 79999
Q ss_pred EEEccCchhHH--HH-HHHHHHcCCcEE-EeCCCCC--------HHHHHHHHHHhhhc
Q 031341 110 VIDFTDASTVY--DN-VKQATAFGMRSV-VYVPHIQ--------LETVSALSAFCDKA 155 (161)
Q Consensus 110 VIDfT~p~~~~--~~-~~~al~~g~~vV-igttg~~--------~e~~~~L~~~A~~~ 155 (161)
+||+|+|-+.. +| ++.|-+.|+|.+ ..-|++. .++.+++.+++++.
T Consensus 70 lIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~ 127 (257)
T COG2099 70 LIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQL 127 (257)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhcc
Confidence 99999998773 44 478899999988 3334332 24555666666643
No 249
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.26 E-value=0.073 Score=44.66 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=58.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D 108 (161)
.++||+|+|+ |.||..++..+.+ .+.++..+..... .|.......+-.....+.++++.++ . ..+|
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~-~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~D 74 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLAR-AGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PPCD 74 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CCCC
Confidence 4479999995 9999999998874 5777775554321 1111110001000001234445443 2 3689
Q ss_pred EEEEccCchhHH---HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 109 VVIDFTDASTVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 109 VVIDfT~p~~~~---~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
+||-++...... +.+...+..+..+|.-.-|+..+ +.|.+..-+..|+
T Consensus 75 ~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~--e~l~~~~~~~~v~ 125 (313)
T PRK06249 75 WVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE--EQLREILPAEHLL 125 (313)
T ss_pred EEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH--HHHHHHCCCCcEE
Confidence 999665433333 33344444455555544577533 2344443333343
No 250
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.26 E-value=0.056 Score=47.49 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
++||+|+| .|.||..++..+. ..|+++. ++|+
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La-~~G~~V~-~~D~ 34 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFA-SRQKQVI-GVDI 34 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHH-hCCCEEE-EEeC
Confidence 57999999 6999999999987 4578866 5564
No 251
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.26 E-value=0.069 Score=44.81 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=57.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCCCCCCeeeeCCH-HHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eL-vavvd~~~~g~~~~~~~g~~~~~~i~v~~dl-~~~l~~~~~~~~~DVVID 112 (161)
+.+|+|+| .|.||+.+++.+. ..+... +-..|...........+|... ....+. .+.. ..+|+||-
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~-~~g~~v~i~g~d~~~~~~~~a~~lgv~d----~~~~~~~~~~~------~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALK-EAGLVVRIIGRDRSAATLKAALELGVID----ELTVAGLAEAA------AEADLVIV 70 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHH-HcCCeEEEEeecCcHHHHHHHhhcCccc----ccccchhhhhc------ccCCEEEE
Confidence 57999999 6999999999886 556654 333443221111111122210 011222 2222 36899995
Q ss_pred ccCchhHHHHHHHHHH-cCCc-EEEeCCCCCHHHHHHHHHHh
Q 031341 113 FTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC 152 (161)
Q Consensus 113 fT~p~~~~~~~~~al~-~g~~-vVigttg~~~e~~~~L~~~A 152 (161)
.++.....+.++.... .+.. +|+.++..-..-.+.+.+..
T Consensus 71 avPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 71 AVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred eccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 5555666676665553 2222 45555544445555565555
No 252
>PLN02477 glutamate dehydrogenase
Probab=96.25 E-value=0.043 Score=48.49 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=69.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------CC-CeeeeCCHHHHHhccc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSIS 102 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~------~~-~i~v~~dl~~~l~~~~ 102 (161)
-.||+|.| +|++|+.+++.+. ..+..++++.|.+ ..|-|..++..... .+ +... -+.++++.
T Consensus 206 g~~VaIqG-fGnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~--- 279 (410)
T PLN02477 206 GQTFVIQG-FGNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILV--- 279 (410)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCcccee---
Confidence 37999999 6999999999886 6799999999953 45666555432110 00 1111 24455665
Q ss_pred ccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~ 159 (161)
.++||++=++..... .+++. +-+..+|+|-. .++++..+.|. +.+|++
T Consensus 280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L~----~rGI~~ 330 (410)
T PLN02477 280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEILR----KKGVVV 330 (410)
T ss_pred --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHHH----HCCcEE
Confidence 489999966544433 34444 35889998864 35666555553 445554
No 253
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.24 E-value=0.031 Score=44.31 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=36.0
Q ss_pred eeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 23 RFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 23 ~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
|-|.-|....|.+ .||.|+|+ |.+|.++++.|. ..|+.=+.++|.+
T Consensus 4 Rqi~l~G~~~q~~L~~s~VlviG~-gglGsevak~L~-~~GVg~i~lvD~d 52 (198)
T cd01485 4 RQIRLWGDEAQNKLRSAKVLIIGA-GALGAEIAKNLV-LAGIDSITIVDHR 52 (198)
T ss_pred ceeeccCHHHHHHHhhCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 5555566666654 69999995 899999999997 7788877788843
No 254
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.21 E-value=0.037 Score=48.01 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=29.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
++||.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R~ 93 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVR-RGYNVVAVARE 93 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEec
Confidence 47999999999999999999974 58998887653
No 255
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=96.21 E-value=0.044 Score=48.79 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=54.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC----------------CCcchhhhh-----cCCCCCCeee
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS----------------VGEDIGMVC-----DMEQPLEIPV 90 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~-----eLvavvd~~~----------------~g~~~~~~~-----g~~~~~~i~v 90 (161)
||.|+|+ |..|.++++.+. ..|+ .-+-++|.+. .|+.-.+.+ .+.....+..
T Consensus 1 kVlvVGa-GGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a 78 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFA-LMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA 78 (435)
T ss_pred CEEEECC-CHHHHHHHHHHH-HcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence 6899995 999999999987 6777 5566888421 122111111 1110112211
Q ss_pred e-CCH---------HHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEe
Q 031341 91 M-SDL---------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 136 (161)
Q Consensus 91 ~-~dl---------~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVig 136 (161)
+ ..+ ++.+ ...|+||++.. +++-...-..|..+++|+|-+
T Consensus 79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~ 129 (435)
T cd01490 79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLES 129 (435)
T ss_pred EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 2 111 1222 36899998874 444455668999999999844
No 256
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=96.18 E-value=0.091 Score=40.10 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=53.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc-EEEEccC
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD 115 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D-VVIDfT~ 115 (161)
++.|+|+ |..|+.+++.+. ..++++++.+|..... .++. -.++|++.+.+++... . ...+ +++....
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~-~~g~~vvgfid~~~~~--~~~~-----i~g~pvlg~~~~l~~~-~--~~~~~~iiai~~ 68 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAE-DSGWEIVGFLDDNPAL--QGTS-----VDGLPVLGGDEDLLRY-P--PDEVDLVVAIGD 68 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHH-hCCCEEEEEEcCCccc--cCcc-----cCCccEECCHHHHhhh-c--ccccEEEEEcCC
Confidence 5889995 999999999986 5699999999954211 1111 2467887666654321 0 1234 4443334
Q ss_pred chhHHHHHHHHHHcCCcE
Q 031341 116 ASTVYDNVKQATAFGMRS 133 (161)
Q Consensus 116 p~~~~~~~~~al~~g~~v 133 (161)
+....+....+.+.+..+
T Consensus 69 ~~~~~~i~~~l~~~g~~~ 86 (201)
T TIGR03570 69 NKLRRRLFEKLKAKGYRF 86 (201)
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 454456666666776544
No 257
>PLN02494 adenosylhomocysteinase
Probab=96.17 E-value=0.031 Score=50.22 Aligned_cols=109 Identities=12% Similarity=0.093 Sum_probs=61.5
Q ss_pred EeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccC
Q 031341 26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK 105 (161)
Q Consensus 26 ~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~ 105 (161)
++.++....--+|+|+| +|.+|+.+++.+. .-+++++ +++++.. ...+.. ..|..+. ++++++.
T Consensus 245 ~r~t~i~LaGKtVvViG-yG~IGr~vA~~ak-a~Ga~VI-V~e~dp~--r~~eA~----~~G~~vv-~leEal~------ 308 (477)
T PLN02494 245 MRATDVMIAGKVAVICG-YGDVGKGCAAAMK-AAGARVI-VTEIDPI--CALQAL----MEGYQVL-TLEDVVS------ 308 (477)
T ss_pred HHhcCCccCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCch--hhHHHH----hcCCeec-cHHHHHh------
Confidence 33444433336899999 6999999999987 4488855 4654321 111110 1233332 6788775
Q ss_pred CccEEEEccCchh-HHHHHHHHHHcCCcEE-EeCCCCCHHHHHHHHHH
Q 031341 106 ARAVVIDFTDAST-VYDNVKQATAFGMRSV-VYVPHIQLETVSALSAF 151 (161)
Q Consensus 106 ~~DVVIDfT~p~~-~~~~~~~al~~g~~vV-igttg~~~e~~~~L~~~ 151 (161)
.+|++|..|.... ........++.|--++ +|-.+ +.-+.+.|.++
T Consensus 309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~-~eID~~aL~~~ 355 (477)
T PLN02494 309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD-NEIDMLGLETY 355 (477)
T ss_pred hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC-CccCHHHHhhc
Confidence 6899998664333 3344455566665444 33321 23334556665
No 258
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.15 E-value=0.17 Score=42.86 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
+..||+|+|+ |.||..++..+....-.+ +.++|.+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 4579999996 999999998877443256 7788853
No 259
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.15 E-value=0.072 Score=47.69 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=72.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---h-----------cCCC-CCCeeeeCCHH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---C-----------DMEQ-PLEIPVMSDLT 95 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~---~-----------g~~~-~~~i~v~~dl~ 95 (161)
.||+|-| +|++|+..++.+. ..|.+++++.|++ ..|-+..++ . +... ..+.... +-+
T Consensus 238 k~VaVqG-~GnVg~~aa~~L~-e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~~ 314 (454)
T PTZ00079 238 KTVVVSG-SGNVAQYAVEKLL-QLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PGK 314 (454)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CCc
Confidence 6999999 6999999999887 5799999999953 345544333 1 1100 0122222 234
Q ss_pred HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341 96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~ 159 (161)
+++. .++|+++=+.+.+.. .+++...++++..+|++-. ..+++..+.| ++++|+|
T Consensus 315 ~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L----~~~GI~~ 372 (454)
T PTZ00079 315 KPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF----KKNGVIF 372 (454)
T ss_pred Cccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH----HHCCcEE
Confidence 5554 479999966655444 5788888899999999864 3455544444 3445554
No 260
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.15 E-value=0.064 Score=43.87 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=55.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhhh-----cCCCCCCe-eeeCCH
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMVC-----DMEQPLEI-PVMSDL 94 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~~-----g~~~~~~i-~v~~dl 94 (161)
||.|+|+ |..|.++++.+. ..|+.=.-++|.+. .|+...+.+ .+....++ +...++
T Consensus 1 kVlvvG~-GGlG~eilk~La-~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLA-LMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 6899995 999999999997 56777777888421 121111110 11001112 111222
Q ss_pred -------HHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeC
Q 031341 95 -------TMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYV 137 (161)
Q Consensus 95 -------~~~l~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~g~~vVigt 137 (161)
++.+ .++|+||++...-... ..-..|.+.++|+|-+-
T Consensus 79 ~~~~~~~~~f~------~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g 123 (234)
T cd01484 79 GPEQDFNDTFF------EQFHIIVNALDNIIARRYVNGMLIFLIVPLIESG 123 (234)
T ss_pred ChhhhchHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 2233 3799999987544443 45578899999999553
No 261
>PRK14851 hypothetical protein; Provisional
Probab=96.14 E-value=0.049 Score=51.00 Aligned_cols=102 Identities=23% Similarity=0.207 Sum_probs=61.3
Q ss_pred eCCCCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhhhh-----cCC
Q 031341 28 STNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGMVC-----DME 83 (161)
Q Consensus 28 ~~~~~~~---~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~----------------~~g~~~~~~~-----g~~ 83 (161)
+....|. .-||+|+|+ |..|..++..+. ..|+.=.-++|.+ ..|++..+.+ .+.
T Consensus 33 ~g~e~Q~kL~~~~VlIvG~-GGlGs~va~~La-r~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in 110 (679)
T PRK14851 33 FTPGEQERLAEAKVAIPGM-GGVGGVHLITMV-RTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN 110 (679)
T ss_pred cCHHHHHHHhcCeEEEECc-CHHHHHHHHHHH-HhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC
Confidence 3444454 479999995 999999999987 5556555567732 1122211111 111
Q ss_pred CCCCeeee------CCHHHHHhcccccCCccEEEEccCchh--H-HHHHHHHHHcCCcEEEeC
Q 031341 84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTDAST--V-YDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~p~~--~-~~~~~~al~~g~~vVigt 137 (161)
...++..+ +++++.+. ++|+|||++.... . ......|.++++|+|.+.
T Consensus 111 P~~~I~~~~~~i~~~n~~~~l~------~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 111 PFLEITPFPAGINADNMDAFLD------GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred CCCeEEEEecCCChHHHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 11233222 23455664 7999999986422 2 344568999999999775
No 262
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.13 E-value=0.029 Score=45.94 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=27.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
++|.|.|++|.+|+.+++.+.+ .+.++.++..+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~-~g~~V~~~~r~ 33 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLE-QGEEVRVLVRP 33 (328)
T ss_pred CeEEEECCccchhHHHHHHHHH-CCCEEEEEEec
Confidence 4799999999999999999984 47887776653
No 263
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.12 E-value=0.047 Score=48.22 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=66.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-------CCCCeeeeCCHHHHHhcc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSI 101 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~-------~~~~i~v~~dl~~~l~~~ 101 (161)
+-.||+|-| +|+.|+..++.+.+. +.+|+++.|+. ..|-|...++... ...+....+. ++++.
T Consensus 206 ~G~rVaVQG-~GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~-- 280 (411)
T COG0334 206 EGARVAVQG-FGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE-- 280 (411)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc--
Confidence 458999999 799999999998755 99999999953 2444433332111 0112222222 66665
Q ss_pred cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeee
Q 031341 102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~ 159 (161)
.++|+++=+...+.. .+++..... + +|.|-. ..+++..+.|. +.+|+|
T Consensus 281 ---~~cDIl~PcA~~n~I~~~na~~l~a-k--~V~EgAN~P~t~eA~~i~~----erGIl~ 331 (411)
T COG0334 281 ---VDCDILIPCALENVITEDNADQLKA-K--IVVEGANGPTTPEADEILL----ERGILV 331 (411)
T ss_pred ---ccCcEEcccccccccchhhHHHhhh-c--EEEeccCCCCCHHHHHHHH----HCCCEE
Confidence 489998855554444 344443333 2 777754 34555544444 566665
No 264
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=96.11 E-value=0.0045 Score=53.37 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=77.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
|. |+|.| +|-..|..+=.+.+.+ +++-|+-.+... ....+ + ....++. ++.+++.+.. .+.|.|...
T Consensus 3 Pg-v~v~G-Tg~~arv~iP~l~e~~-f~v~A~w~Rt~~-ea~a~-a---a~~~v~~~t~~~deiLl~----~~vdlv~i~ 70 (367)
T KOG2742|consen 3 PG-VGVFG-TGIFARVLIPLLKEEG-FEVKAIWGRTKT-EAKAK-A---AEMNVRKYTSRLDEILLD----QDVDLVCIS 70 (367)
T ss_pred Cc-eeEec-cChhHhhhhhhhhhcc-chHhhhhchhhh-HHHHh-h---hccchhhccccchhhhcc----CCcceeEec
Confidence 45 99999 7999999977776555 998888877321 11111 1 1234444 5688888764 577766645
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~ 155 (161)
-+|..+.+...+++..|+|||+.++.-+.++.+.+.++++..
T Consensus 71 lpp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s~ 112 (367)
T KOG2742|consen 71 LPPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYSP 112 (367)
T ss_pred cCCccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhch
Confidence 577778899999999999999999876667777776665443
No 265
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=96.09 E-value=0.046 Score=47.33 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=74.9
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhhcCC------
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------ 83 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~---------------------~~~eLvavvd~--~~~g~~~~~~~g~~------ 83 (161)
..|+||+|+| -|+-.+.+++-+..- .+.|+++..|. .+.|+++.+..-..
T Consensus 3 ~~~vrv~iiG-~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~ 81 (362)
T COG1260 3 TTMVRVAIIG-VGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK 81 (362)
T ss_pred cceEEEEEEe-ccchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence 4689999999 599988888766533 25688888883 34566655543110
Q ss_pred -----CCCCeeee---------CCHHHHHhccc--------------ccCCccEEEEccC---chhHHHHHHHHHHcCCc
Q 031341 84 -----QPLEIPVM---------SDLTMVLGSIS--------------QSKARAVVIDFTD---ASTVYDNVKQATAFGMR 132 (161)
Q Consensus 84 -----~~~~i~v~---------~dl~~~l~~~~--------------~~~~~DVVIDfT~---p~~~~~~~~~al~~g~~ 132 (161)
-+.|+.+- ..+++.+.+++ +....|+++.|.+ .++..-++..+++.|++
T Consensus 82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a 161 (362)
T COG1260 82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA 161 (362)
T ss_pred eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence 01111110 11222222100 1223333444432 23446788999999999
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 133 SVVYVPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 133 vVigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
.|-.+|.+... ...+.+++++.++...|
T Consensus 162 fvN~~P~~iA~-dP~~~~~fee~g~pi~G 189 (362)
T COG1260 162 FVNAIPVFIAS-DPAWVELFEEKGLPIAG 189 (362)
T ss_pred eecccCccccC-CHHHHHHHHHcCCceec
Confidence 99988855332 35588999998887665
No 266
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.07 E-value=0.045 Score=49.41 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
-||+|+|+ |.||+.|+..+. ..|++++ ++|++
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la-~aG~~V~-l~D~~ 39 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAA-QAGHTVL-LYDAR 39 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence 47999995 999999999887 6689876 67754
No 267
>PRK05086 malate dehydrogenase; Provisional
Probab=96.06 E-value=0.087 Score=44.64 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=41.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCC-CCCeee----eCCHHHHHhcccccCCccE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPV----MSDLTMVLGSISQSKARAV 109 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~g~~~~~~~g~~~-~~~i~v----~~dl~~~l~~~~~~~~~DV 109 (161)
+||+|+|++|++|+.++..+.. .+....+.++|+.... .+....+.. +....+ .+++.+.+. ++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~alDl~~~~~~~~i~~~~~~d~~~~l~------~~Di 72 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGVAVDLSHIPTAVKIKGFSGEDPTPALE------GADV 72 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cceehhhhcCCCCceEEEeCCCCHHHHcC------CCCE
Confidence 6999999999999999988854 3444555566643221 111111111 111222 246556664 7999
Q ss_pred EEEcc
Q 031341 110 VIDFT 114 (161)
Q Consensus 110 VIDfT 114 (161)
||.+.
T Consensus 73 VIita 77 (312)
T PRK05086 73 VLISA 77 (312)
T ss_pred EEEcC
Confidence 98655
No 268
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.05 E-value=0.11 Score=44.30 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 30 ~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
|+..+|.||+|+|+.|++|+.++..+...+-..-+..+|.
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 5566789999999779999999998875555544557775
No 269
>PRK14852 hypothetical protein; Provisional
Probab=96.02 E-value=0.052 Score=52.64 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=64.1
Q ss_pred EEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhhh-----h
Q 031341 25 ISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGMV-----C 80 (161)
Q Consensus 25 ~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~----------------~~g~~~~~~-----~ 80 (161)
|.-+....|.+ -||+|+|+ |+.|..++..+. ..|+.=.-++|.+ ..|++..+. .
T Consensus 319 i~lig~e~Q~kL~~srVlVvGl-GGlGs~ia~~LA-raGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~ 396 (989)
T PRK14852 319 LGLVDYAGQRRLLRSRVAIAGL-GGVGGIHLMTLA-RTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERAL 396 (989)
T ss_pred HhhcCHHHHHHHhcCcEEEECC-cHHHHHHHHHHH-HcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHH
Confidence 33355555643 69999995 999999999997 5566555677732 112221111 1
Q ss_pred cCCCCCCeeee------CCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHHHcCCcEEEeCC
Q 031341 81 DMEQPLEIPVM------SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 81 g~~~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~g~~vVigtt 138 (161)
.++...++.++ +++++.+. ++|+|||.+.. +.-......|.++|+|+|.+..
T Consensus 397 ~INP~v~I~~~~~~I~~en~~~fl~------~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 397 SVNPFLDIRSFPEGVAAETIDAFLK------DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHCCCCeEEEEecCCCHHHHHHHhh------CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 11112233333 34555553 79999998753 2223455678999999997754
No 270
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.01 E-value=0.038 Score=47.15 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=44.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCC------cEEEEEEecCC-----CCcchhhhhcCC--CCCCeeeeCCHHHHHhc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAIDSHS-----VGEDIGMVCDME--QPLEIPVMSDLTMVLGS 100 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~------~eLvavvd~~~-----~g~~~~~~~g~~--~~~~i~v~~dl~~~l~~ 100 (161)
.|+||+|+||+|++|+.++..+...+- .+|+. +|+.. .|. ..++.... ...++.+..++.+.+.
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~-~~Dl~d~~~~~~~~~~~~~~~~~~l~- 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGV-VMELQDCAFPLLKSVVATTDPEEAFK- 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEcCCccccccce-eeehhhccccccCCceecCCHHHHhC-
Confidence 368999999889999999999886442 36764 56421 121 11221100 0113444567666664
Q ss_pred ccccCCccEEEEcc
Q 031341 101 ISQSKARAVVIDFT 114 (161)
Q Consensus 101 ~~~~~~~DVVIDfT 114 (161)
++|+||-..
T Consensus 78 -----~aDiVI~tA 86 (325)
T cd01336 78 -----DVDVAILVG 86 (325)
T ss_pred -----CCCEEEEeC
Confidence 899988544
No 271
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.99 E-value=0.054 Score=43.11 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
..||+|+|+ |.||+.++..+. ..|+.=+-++|.+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La-~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLA-RAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHH-HcCCCEEEEECCC
Confidence 368999996 999999999997 5677545578853
No 272
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.98 E-value=0.058 Score=47.66 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=52.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~--~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVI 111 (161)
-||+|+| .|+.|+.+++.+. ..|.++. +.|...... +..+.+ .+.|+.++ .+..+.+. ++|+||
T Consensus 15 ~~i~v~G-~G~sG~a~a~~L~-~~G~~V~-~~D~~~~~~~~~~~~~l---~~~gi~~~~~~~~~~~~~------~~dlVV 82 (458)
T PRK01710 15 KKVAVVG-IGVSNIPLIKFLV-KLGAKVT-AFDKKSEEELGEVSNEL---KELGVKLVLGENYLDKLD------GFDVIF 82 (458)
T ss_pred CeEEEEc-ccHHHHHHHHHHH-HCCCEEE-EECCCCCccchHHHHHH---HhCCCEEEeCCCChHHhc------cCCEEE
Confidence 4899999 6999999998876 6678754 577432111 111111 13455553 22234343 689888
Q ss_pred EccC-chhHHHHHHHHHHcCCcEEE
Q 031341 112 DFTD-ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 112 DfT~-p~~~~~~~~~al~~g~~vVi 135 (161)
.|+ -....+.+.+|.+.|++++.
T Consensus 83 -~Spgi~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 83 -KTPSMRIDSPELVKAKEEGAYITS 106 (458)
T ss_pred -ECCCCCCCchHHHHHHHcCCcEEe
Confidence 552 12234677888889988764
No 273
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.98 E-value=0.066 Score=45.82 Aligned_cols=63 Identities=24% Similarity=0.203 Sum_probs=44.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
..|||+| +|++|+.+++.+. .=||++. ++|+.. ..+... ..++.-..++++++. ..|+|+-.+
T Consensus 143 kTvGIiG-~G~IG~~va~~l~-afgm~v~-~~d~~~-~~~~~~------~~~~~~~~~Ld~lL~------~sDiv~lh~ 205 (324)
T COG0111 143 KTVGIIG-LGRIGRAVAKRLK-AFGMKVI-GYDPYS-PRERAG------VDGVVGVDSLDELLA------EADILTLHL 205 (324)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCCeEE-EECCCC-chhhhc------cccceecccHHHHHh------hCCEEEEcC
Confidence 5899999 6999999999886 5588877 456421 111111 223444578999996 699988655
No 274
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.95 E-value=0.018 Score=49.32 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=53.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhhcCCCCCCeeeeCCHHH-HHhcccccCCccE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV 109 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLv---avvd~-~~~g~~~~~~~g~~~~~~i~v~~dl~~-~l~~~~~~~~~DV 109 (161)
.++|+| ||||-.|+.+++.|. ..++.+- -+.+. ...|+.+ .+. ...+.+- ++++ .+ .++|+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Le-er~fpv~~l~l~~s~~~s~gk~i----~f~-g~~~~V~-~l~~~~f------~~vDi 68 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALE-QSDLEIEQISIVEIEPFGEEQGI----RFN-NKAVEQI-APEEVEW------ADFNY 68 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHH-hcCCchhheeecccccccCCCEE----EEC-CEEEEEE-ECCccCc------ccCCE
Confidence 378999 999999999999776 4555432 22222 2233322 111 1233332 3333 33 37999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEE
Q 031341 110 VIDFTDASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~g~~vVi 135 (161)
++ |+..+...+.+..+.++|..||-
T Consensus 69 a~-fag~~~s~~~ap~a~~aG~~VID 93 (322)
T PRK06901 69 VF-FAGKMAQAEHLAQAAEAGCIVID 93 (322)
T ss_pred EE-EcCHHHHHHHHHHHHHCCCEEEE
Confidence 98 76566667889999999999884
No 275
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=95.94 E-value=0.025 Score=47.45 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
|.||.|.|++|.+|+.+++.+.+ .+.+++.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~ 34 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK 34 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence 46899999999999999999984 46666666664
No 276
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.94 E-value=0.043 Score=49.55 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
-||+|+|+ |.||+.|+..+. ..|++++ ++|++
T Consensus 6 ~kV~VIGa-G~MG~gIA~~la-~aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGA-GAMGAGIAQVAA-SAGHQVL-LYDIR 37 (503)
T ss_pred cEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence 47999995 999999999887 6688876 67753
No 277
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.94 E-value=0.11 Score=44.78 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=62.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-+|+|+| .|++|+.+++.|.... +++..=-..........+ .+.. +.|+++.+. +.|++|-..+
T Consensus 163 K~vgilG-~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~-------~~~~-~~d~~~~~~------~sD~ivv~~p 226 (336)
T KOG0069|consen 163 KTVGILG-LGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYE-------YYAE-FVDIEELLA------NSDVIVVNCP 226 (336)
T ss_pred CEEEEec-CcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHH-------hccc-ccCHHHHHh------hCCEEEEecC
Confidence 4899999 5999999999998744 544432222211111111 1111 468899885 7998886553
Q ss_pred --chhH-HHHHHHHHHcCCcEEEeCCCC-CHHHHHHHHHHhhhcCeeecC
Q 031341 116 --ASTV-YDNVKQATAFGMRSVVYVPHI-QLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 116 --p~~~-~~~~~~al~~g~~vVigttg~-~~e~~~~L~~~A~~~~Vv~tg 161 (161)
+++. .-+-+.....+.-.|+-.++. .--+.+++.++.++-.+..+|
T Consensus 227 Lt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aG 276 (336)
T KOG0069|consen 227 LTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAG 276 (336)
T ss_pred CCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCccccc
Confidence 2222 234455556666666555521 111234577777776665554
No 278
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.94 E-value=0.061 Score=48.41 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=50.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
--+|+|+| +|++|+.+++.+. .-+++++ +++++.. ... +.. ..|+. +.++++++. .+|+||..+
T Consensus 254 GKtVgVIG-~G~IGr~vA~rL~-a~Ga~Vi-V~e~dp~-~a~-~A~----~~G~~-~~~leell~------~ADIVI~at 317 (476)
T PTZ00075 254 GKTVVVCG-YGDVGKGCAQALR-GFGARVV-VTEIDPI-CAL-QAA----MEGYQ-VVTLEDVVE------TADIFVTAT 317 (476)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCch-hHH-HHH----hcCce-eccHHHHHh------cCCEEEECC
Confidence 36899999 6999999999887 5678754 5654321 110 000 12333 247888875 799999876
Q ss_pred CchhH-HHHHHHHHHcCCcEE
Q 031341 115 DASTV-YDNVKQATAFGMRSV 134 (161)
Q Consensus 115 ~p~~~-~~~~~~al~~g~~vV 134 (161)
..... .......++.|.-++
T Consensus 318 Gt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 318 GNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred CcccccCHHHHhccCCCcEEE
Confidence 43222 233444445554433
No 279
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.93 E-value=0.12 Score=44.02 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=42.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+|||+| +|++|+.+++.+...=|++++ ++|+... ..... ..++. +.+++++++ .+|+|+-..
T Consensus 146 ktvGIiG-~G~IG~~va~~l~~~fgm~V~-~~~~~~~-~~~~~------~~~~~-~~~l~ell~------~sDvv~lh~ 208 (323)
T PRK15409 146 KTLGIVG-MGRIGMALAQRAHFGFNMPIL-YNARRHH-KEAEE------RFNAR-YCDLDTLLQ------ESDFVCIIL 208 (323)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhcCCCEEE-EECCCCc-hhhHH------hcCcE-ecCHHHHHH------hCCEEEEeC
Confidence 6899999 799999999987523478876 4554321 11111 22333 469999996 799988544
No 280
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.041 Score=50.39 Aligned_cols=89 Identities=13% Similarity=0.213 Sum_probs=60.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC--HHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d--l~~~l~~~~~~~~~DVVID 112 (161)
..|+.|+|| |.-|..+++.+...+.+.+||++|.+. . ..|.. =.|+||+.. +++++++ ...+-++.
T Consensus 116 ~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~--~----~~g~~-i~Gv~V~g~~~i~~~v~~----~~~~~iii 183 (588)
T COG1086 116 RIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP--D----LTGMK-IRGVPVLGRIEIERVVEE----LGIQLILI 183 (588)
T ss_pred CCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh--h----hcCCE-EeceeeechhHHHHHHHH----cCCceEEE
Confidence 489999996 999999999999999999999999542 1 11211 246788744 4455553 56774442
Q ss_pred cc---CchhHHHHHHHHHHcCCcEEE
Q 031341 113 FT---DASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 113 fT---~p~~~~~~~~~al~~g~~vVi 135 (161)
+- .++...+.++.+-+.|+.+=+
T Consensus 184 Aips~~~~~~~~i~~~l~~~~~~v~~ 209 (588)
T COG1086 184 AIPSASQEERRRILLRLARTGIAVRI 209 (588)
T ss_pred ecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 32 233344667788888866543
No 281
>PRK06091 membrane protein FdrA; Validated
Probab=95.90 E-value=0.044 Score=50.07 Aligned_cols=72 Identities=8% Similarity=0.115 Sum_probs=59.9
Q ss_pred CeeeeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeecC
Q 031341 87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161 (161)
Q Consensus 87 ~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (161)
..|.+.++.++...+ .++|+++.+.++..+.+.++.|++.|+++++-+.|+..+..++|.++|++.++..-|
T Consensus 101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmG 172 (555)
T PRK06091 101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLLVMG 172 (555)
T ss_pred CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 456778888887642 467988877777888899999999999999988899888889999999999887655
No 282
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=95.88 E-value=0.071 Score=43.54 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=23.5
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~ 69 (161)
|.|.|++|.+|+.+++.+.+. +. ++++ +++
T Consensus 1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence 579999999999999999855 55 5654 453
No 283
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.85 E-value=0.067 Score=46.90 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=65.5
Q ss_pred EEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhhh----cC---------C---CCCCeeeeCCHHHHHh
Q 031341 40 INGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMVC----DM---------E---QPLEIPVMSDLTMVLG 99 (161)
Q Consensus 40 ViGa~G~mGr~i~~~l~~~~-~~eLvavvd~~~~g---~~~~~~~----g~---------~---~~~~i~v~~dl~~~l~ 99 (161)
|.|+||.+|+..++.+.++| +++++++..+.... +.+.++- .+ . ...++.++...+.+.+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~ 80 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLIA 80 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHH
Confidence 57999999999999988764 59999999843210 0011100 00 0 0012333333332211
Q ss_pred cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031341 100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (161)
Q Consensus 100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~ 155 (161)
++....+|.|+-...-.+...-...++++|+.+-..+-.--.---+.+.+++++.
T Consensus 81 -l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~ 135 (383)
T PRK12464 81 -VATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANKETLVAAGHIVTDLAKQN 135 (383)
T ss_pred -HHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHc
Confidence 1223568999966666667788888999999988754211111223455555554
No 284
>PRK07877 hypothetical protein; Provisional
Probab=95.85 E-value=0.055 Score=51.02 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=61.5
Q ss_pred eCCCCCC---CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC---------------CCCcchhhh-----hcCC
Q 031341 28 STNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH---------------SVGEDIGMV-----CDME 83 (161)
Q Consensus 28 ~~~~~~~---~ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~---------------~~g~~~~~~-----~g~~ 83 (161)
.....|. .-||+|+|+ | .|..++..|. ..|+ -=.-++|.+ ..|++..+. ..+.
T Consensus 97 ig~~~Q~~L~~~~V~IvG~-G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in 173 (722)
T PRK07877 97 ITAEEQERLGRLRIGVVGL-S-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD 173 (722)
T ss_pred CCHHHHHHHhcCCEEEEEe-c-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC
Confidence 3444554 369999997 8 9999999887 4453 333466632 112221111 1111
Q ss_pred CCCCeeee------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031341 84 QPLEIPVM------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 84 ~~~~i~v~------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt 138 (161)
....+..+ +++++++. ++|+|||++..-.. ...-..|.++|+|+|+|+.
T Consensus 174 p~i~v~~~~~~i~~~n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 174 PYLPVEVFTDGLTEDNVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred CCCEEEEEeccCCHHHHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11233222 24666664 79999999954444 4455889999999999874
No 285
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=95.85 E-value=0.079 Score=43.97 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=53.3
Q ss_pred EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----CCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 39 ~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~----~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.|.|++|.+|+.+++.|++.....=|-+.|+.............. -..++.-.++++++++ ++|+||-..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~------g~d~V~H~A 74 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE------GVDVVFHTA 74 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc------CCceEEEeC
Confidence 378999999999999999776533344555322111101111100 0112222345666674 799999764
Q ss_pred Cc---h--------------hHHHHHHHHHHcCCcEEEeC
Q 031341 115 DA---S--------------TVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 115 ~p---~--------------~~~~~~~~al~~g~~vVigt 137 (161)
.| . +....+..|.++++.-++-|
T Consensus 75 a~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 75 APVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 22 1 22345678889998866554
No 286
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.83 E-value=0.088 Score=42.95 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=58.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhhh-----hcCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGMV-----CDMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~~~-----~g~~~~~~i~v~-- 91 (161)
..||.|+|+ |..|+.++++|. ..|+.=.-++|.+. .|++..+. ..+.....+..+
T Consensus 11 ~~~VlVvG~-GGvGs~va~~La-r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALA-RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 368999995 999999999997 55665555777421 11111110 011001112112
Q ss_pred ----CCHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEe
Q 031341 92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 136 (161)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVig 136 (161)
+++++.+. .++|+|||+. ++..-......|.++++|+|..
T Consensus 89 ~i~~~~~~~l~~-----~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 89 FLTPDNSEDLLG-----GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred ecCHhHHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 23445553 3699999987 4555567778999999999954
No 287
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.82 E-value=0.068 Score=48.45 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=59.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
.+|+|+| +|+||+.+++.+. .-|+++. ++|+... ..... ..++... ++++++. .+|+|+...+
T Consensus 141 ktvgIiG-~G~IG~~vA~~l~-~fG~~V~-~~d~~~~-~~~~~------~~g~~~~-~l~ell~------~aDiV~l~lP 203 (526)
T PRK13581 141 KTLGIIG-LGRIGSEVAKRAK-AFGMKVI-AYDPYIS-PERAA------QLGVELV-SLDELLA------RADFITLHTP 203 (526)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCCEEE-EECCCCC-hhHHH------hcCCEEE-cHHHHHh------hCCEEEEccC
Confidence 6899999 6999999999987 5588876 4564321 11111 2344444 8999986 6899885443
Q ss_pred ch-hHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 116 AS-TVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 116 p~-~~~----~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
.. ... ......++.|.-+|--..|--.+ .+.|.++-++..+
T Consensus 204 ~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd-e~aL~~aL~~g~i 249 (526)
T PRK13581 204 LTPETRGLIGAEELAKMKPGVRIINCARGGIID-EAALAEALKSGKV 249 (526)
T ss_pred CChHhhcCcCHHHHhcCCCCeEEEECCCCceeC-HHHHHHHHhcCCe
Confidence 22 111 23344455565444322332222 2345555544443
No 288
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.76 E-value=0.033 Score=46.99 Aligned_cols=92 Identities=7% Similarity=-0.028 Sum_probs=60.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCC--CeeeeCCHHHHHhcccccCCccEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPL--EIPVMSDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~-~~~~--~i~v~~dl~~~l~~~~~~~~~DVVI 111 (161)
.-+++|+| +|..|+.+++.+.....++=+-+++++.. +...+... .... .+.+.++.+++.. ++|+|+
T Consensus 117 a~~l~iiG-aG~QA~~~~~a~~~v~~i~~v~v~~r~~~--~a~~f~~~~~~~~~~~v~~~~~~~eav~------~aDIV~ 187 (301)
T PRK06407 117 VENFTIIG-SGFQAETQLEGMASVYNPKRIRVYSRNFD--HARAFAERFSKEFGVDIRPVDNAEAALR------DADTIT 187 (301)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEE
Confidence 36799999 59999999999998888888889986531 11121110 0112 3555789999985 799999
Q ss_pred EccCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341 112 DFTDASTVYDNV-KQATAFGMRSV-VYV 137 (161)
Q Consensus 112 DfT~p~~~~~~~-~~al~~g~~vV-igt 137 (161)
=+| |... +.+ ...++.|.||. +|.
T Consensus 188 taT-~s~~-P~~~~~~l~pg~hV~aiGs 213 (301)
T PRK06407 188 SIT-NSDT-PIFNRKYLGDEYHVNLAGS 213 (301)
T ss_pred Eec-CCCC-cEecHHHcCCCceEEecCC
Confidence 544 3322 222 23457788876 453
No 289
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.75 E-value=0.091 Score=44.38 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=28.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
++.||.|.|++|.+|+.+++.|.+. +.+++++..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d~ 47 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLDN 47 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4579999999999999999999855 788876654
No 290
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.75 E-value=0.043 Score=48.54 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=56.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
-||.|+|+ |.||..+++.+. ..++.-+-++.++. .++.+++. +.+ +.-++++.+.+. ++||||-.
T Consensus 179 ~~vlvIGA-Gem~~lva~~L~-~~g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l~------~~DvViss 245 (414)
T COG0373 179 KKVLVIGA-GEMGELVAKHLA-EKGVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEALA------EADVVISS 245 (414)
T ss_pred CeEEEEcc-cHHHHHHHHHHH-hCCCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhhh------hCCEEEEe
Confidence 57999996 999999999987 55666677887764 22333332 223 333456666664 79999976
Q ss_pred c-Cch--hHHHHHHHHHHcCCc
Q 031341 114 T-DAS--TVYDNVKQATAFGMR 132 (161)
Q Consensus 114 T-~p~--~~~~~~~~al~~g~~ 132 (161)
| .|+ ...+....+++...+
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 246 TSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred cCCCccccCHHHHHHHHhcccC
Confidence 6 233 335777888887777
No 291
>PLN02214 cinnamoyl-CoA reductase
Probab=95.74 E-value=0.12 Score=43.67 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
++.+|.|.|++|.+|+.+++.+. ..+.++++...+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~-~~G~~V~~~~r~ 43 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILL-ERGYTVKGTVRN 43 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHH-HCcCEEEEEeCC
Confidence 34689999999999999999987 458898877653
No 292
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.74 E-value=0.043 Score=46.90 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=57.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC---CCCCCeeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM---EQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~---~~~~~i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
++|.|.|+.|.+|+-.+.+|.+ .|.+++ |+|+-..|.... +... ....++.=..-+++++++ .++|+||.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~~-v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKIA-LLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHHH-hhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence 5799999999999999999984 889877 778533332211 1100 001111111235667774 79999999
Q ss_pred ccC----ch--------------hHHHHHHHHHHcCCcEE
Q 031341 113 FTD----AS--------------TVYDNVKQATAFGMRSV 134 (161)
Q Consensus 113 fT~----p~--------------~~~~~~~~al~~g~~vV 134 (161)
|+- ++ .....++.+.++|+.-+
T Consensus 74 FAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~ 113 (329)
T COG1087 74 FAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKF 113 (329)
T ss_pred CccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEE
Confidence 972 22 23455677888886544
No 293
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.73 E-value=0.015 Score=43.65 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=44.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV 110 (161)
+||+|+|++|..|+.++-.+...+-..=+..+|... .| .|+....... ...+.+..+..+.+ .++|+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~~~~~------~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPL-PSPVRITSGDYEAL------KDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGS-TEEEEEEESSGGGG------TTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhc-cccccccccccccc------ccccEE
Confidence 699999988999999999988665444355888541 11 2222222111 22344444444445 379999
Q ss_pred EEcc
Q 031341 111 IDFT 114 (161)
Q Consensus 111 IDfT 114 (161)
|-..
T Consensus 74 vita 77 (141)
T PF00056_consen 74 VITA 77 (141)
T ss_dssp EETT
T ss_pred EEec
Confidence 8544
No 294
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.71 E-value=0.2 Score=40.43 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=52.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee----CCHHHHHhcccccCCccEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~----~dl~~~l~~~~~~~~~DVVI 111 (161)
+++.|+|+ |++|+.+++.|. ..+.+++.+-+.. ....++.. ...+..++ ++.+ +|.+.. =.++|++|
T Consensus 1 m~iiIiG~-G~vG~~va~~L~-~~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~-~L~~ag-i~~aD~vv 71 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELS-EEGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDED-VLEEAG-IDDADAVV 71 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHH-hCCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHH-HHHhcC-CCcCCEEE
Confidence 58999995 999999999987 6678877665532 12222111 01232222 2322 222100 14788888
Q ss_pred EccCchhHH-HHHHHHHH-cCCcEEEeCC
Q 031341 112 DFTDASTVY-DNVKQATA-FGMRSVVYVP 138 (161)
Q Consensus 112 DfT~p~~~~-~~~~~al~-~g~~vVigtt 138 (161)
=.|.-+... -....+++ .|+|-++.+.
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 555443333 23344444 7888887664
No 295
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.71 E-value=0.12 Score=45.02 Aligned_cols=87 Identities=20% Similarity=0.144 Sum_probs=50.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDf 113 (161)
+|.|+|+ |++|+.+++.+. ..|.++++ .|.... .....+.+ .+.|+.++ .+..+.+. ..+|+||--
T Consensus 7 ~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l---~~~g~~~~~~~~~~~~~~-----~~~d~vV~s 75 (447)
T PRK02472 7 KVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQEL---LEEGIKVICGSHPLELLD-----EDFDLMVKN 75 (447)
T ss_pred EEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHH---HhcCCEEEeCCCCHHHhc-----CcCCEEEEC
Confidence 6899995 889999988776 77888665 464321 11111111 13355443 33444443 248988733
Q ss_pred c-CchhHHHHHHHHHHcCCcEEE
Q 031341 114 T-DASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 114 T-~p~~~~~~~~~al~~g~~vVi 135 (161)
. .|.. .+.+..|.++|++++.
T Consensus 76 ~gi~~~-~~~~~~a~~~~i~v~~ 97 (447)
T PRK02472 76 PGIPYT-NPMVEKALEKGIPIIT 97 (447)
T ss_pred CCCCCC-CHHHHHHHHCCCcEEe
Confidence 2 1332 3567777888888763
No 296
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.68 E-value=0.061 Score=47.56 Aligned_cols=87 Identities=9% Similarity=0.122 Sum_probs=53.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
--+|+|+| +|.+|+.+++.+. .-|++++ ++|.+.. +.. .+ ...|..++ ++++++. .+|+||++|
T Consensus 202 GktVvViG-~G~IG~~va~~ak-~~Ga~Vi-V~d~d~~--R~~-~A---~~~G~~~~-~~~e~v~------~aDVVI~at 265 (413)
T cd00401 202 GKVAVVAG-YGDVGKGCAQSLR-GQGARVI-VTEVDPI--CAL-QA---AMEGYEVM-TMEEAVK------EGDIFVTTT 265 (413)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEECChh--hHH-HH---HhcCCEEc-cHHHHHc------CCCEEEECC
Confidence 35899999 5999999999776 6677755 4775321 111 11 12344332 4566664 689999998
Q ss_pred CchhHHH-HHHHHHHcCCcEE-EeC
Q 031341 115 DASTVYD-NVKQATAFGMRSV-VYV 137 (161)
Q Consensus 115 ~p~~~~~-~~~~al~~g~~vV-igt 137 (161)
....... -...+++.|.-++ +|.
T Consensus 266 G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 5444443 3355667776554 443
No 297
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.65 E-value=0.034 Score=46.74 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=47.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVVID 112 (161)
.-||+|+| .|++|+.+++.+... +.++. ++++... ...... +.+... ++++.+.+. +.|+||+
T Consensus 152 g~kvlViG-~G~iG~~~a~~L~~~-Ga~V~-v~~r~~~--~~~~~~----~~G~~~~~~~~l~~~l~------~aDiVI~ 216 (296)
T PRK08306 152 GSNVLVLG-FGRTGMTLARTLKAL-GANVT-VGARKSA--HLARIT----EMGLSPFHLSELAEEVG------KIDIIFN 216 (296)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHC-CCEEE-EEECCHH--HHHHHH----HcCCeeecHHHHHHHhC------CCCEEEE
Confidence 46999999 599999999998754 67655 4564321 111110 223222 245666664 6899997
Q ss_pred ccCchhHHHHHHHHHHcCCcE
Q 031341 113 FTDASTVYDNVKQATAFGMRS 133 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~v 133 (161)
.+++....+.....++.+--+
T Consensus 217 t~p~~~i~~~~l~~~~~g~vI 237 (296)
T PRK08306 217 TIPALVLTKEVLSKMPPEALI 237 (296)
T ss_pred CCChhhhhHHHHHcCCCCcEE
Confidence 654433333333334444333
No 298
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=95.63 E-value=0.096 Score=42.59 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvav 66 (161)
||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence 689999999999999999974 57787654
No 299
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=95.63 E-value=0.1 Score=46.56 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=27.4
Q ss_pred EEeeCCCCC---------CCeeEEEEcCCCHHHHHHHHHHHhc
Q 031341 25 ISCSTNPPQ---------SNIKVIINGAVKEIGRAAVIAVTKA 58 (161)
Q Consensus 25 ~~~~~~~~~---------~~ikV~ViGa~G~mGr~i~~~l~~~ 58 (161)
+||+++.-. .++||+|+|++|.+|..++-.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 81 VFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred EEEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhc
Confidence 788776433 4699999997799999999988744
No 300
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.63 E-value=0.11 Score=42.23 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 031341 37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~-~~eLvav 66 (161)
||.|.|++|.+|+.+++.+.+.. +.+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999999999999998664 4787754
No 301
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.63 E-value=0.13 Score=45.96 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=72.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcCC-----------CCC-CeeeeCCHH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-----------QPL-EIPVMSDLT 95 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~---~g~~-----------~~~-~i~v~~dl~ 95 (161)
.||+|-| +|++|+..++.+. ..|.+|+++.|+. ..|.+..++ .... ..+ +.... +-+
T Consensus 229 ~~vaIQG-fGnVG~~aA~~L~-e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~ 305 (445)
T PRK14030 229 KTVAISG-FGNVAWGAATKAT-ELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGK 305 (445)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCc
Confidence 6999999 6999999999886 5799999998842 345554431 1000 011 22222 345
Q ss_pred HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC-C-CCHHHHHHHHHHhhhcCeee
Q 031341 96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt-g-~~~e~~~~L~~~A~~~~Vv~ 159 (161)
+++. .++||++=+...+.. .+++....+++..+|+|-. + .+++..+.| ++.+|++
T Consensus 306 ~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL----~~rGI~~ 363 (445)
T PRK14030 306 KPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKF----IAAKQLF 363 (445)
T ss_pred ccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH----HHCCCEE
Confidence 5665 589999976655444 5788888899999999865 3 344444333 3445554
No 302
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.62 E-value=0.14 Score=43.44 Aligned_cols=57 Identities=18% Similarity=0.010 Sum_probs=40.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+|+|+| +|++|+.+++.+. .=|+++.+ +++.. .. + .. -+.++++++. ..|+|+...
T Consensus 149 ktvgIiG-~G~IG~~vA~~l~-~fgm~V~~-~~~~~--~~--~--------~~-~~~~l~ell~------~sDiv~l~l 205 (317)
T PRK06487 149 KTLGLLG-HGELGGAVARLAE-AFGMRVLI-GQLPG--RP--A--------RP-DRLPLDELLP------QVDALTLHC 205 (317)
T ss_pred CEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCC--Cc--c--------cc-cccCHHHHHH------hCCEEEECC
Confidence 5899999 7999999999886 45888775 45431 11 0 01 1348999996 689999555
No 303
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.61 E-value=0.14 Score=45.78 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=66.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhh--------------cCCCCCCeeeeCCHHH
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC--------------DMEQPLEIPVMSDLTM 96 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~--------------g~~~~~~i~v~~dl~~ 96 (161)
.||+|.| .|++|+..++.|. ..|.+++++.|++ ..|-+..++. +.....+... .+.++
T Consensus 229 ~rVaVQG-fGNVG~~aA~~L~-e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~-i~~d~ 305 (444)
T PRK14031 229 KVCLVSG-SGNVAQYTAEKVL-ELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY-VEGAR 305 (444)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE-cCCcc
Confidence 6999999 6999999999887 6799999999942 2344443221 0000112222 24455
Q ss_pred HHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC-C-CCHHHHHHH
Q 031341 97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSAL 148 (161)
Q Consensus 97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVigtt-g-~~~e~~~~L 148 (161)
.+. .++|+++=+...+.. .+++......|+.+|++-. + .+++..+.|
T Consensus 306 ~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L 355 (444)
T PRK14031 306 PWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVF 355 (444)
T ss_pred ccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHH
Confidence 654 478998855544433 5777777778888888754 2 344444433
No 304
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.60 E-value=0.046 Score=47.81 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=41.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.+|||+| +|+||+.+++.+. .=|+++.+ +|+..... . . . ..+.++++++. .+|+|+-.+
T Consensus 117 ktvGIIG-~G~IG~~vA~~l~-a~G~~V~~-~dp~~~~~--~-------~-~-~~~~~L~ell~------~sDiI~lh~ 175 (378)
T PRK15438 117 RTVGIVG-VGNVGRRLQARLE-ALGIKTLL-CDPPRADR--G-------D-E-GDFRSLDELVQ------EADILTFHT 175 (378)
T ss_pred CEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCccccc--c-------c-c-cccCCHHHHHh------hCCEEEEeC
Confidence 6899999 6999999999987 56899874 56432100 0 0 1 12568999986 689988544
No 305
>PRK06182 short chain dehydrogenase; Validated
Probab=95.58 E-value=0.23 Score=39.97 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=26.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-++.|.|++|++|+.+++.+. ..+.+++++..
T Consensus 4 k~vlItGasggiG~~la~~l~-~~G~~V~~~~r 35 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLA-AQGYTVYGAAR 35 (273)
T ss_pred CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence 479999999999999999987 46888876554
No 306
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.57 E-value=0.1 Score=43.26 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=26.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
|||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHH-CCCeEEEEe
Confidence 5899999999999999999974 588888753
No 307
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.56 E-value=0.12 Score=46.07 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=56.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHH---HHHhcccccCCccEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAVV 110 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~---~~l~~~~~~~~~DVV 110 (161)
-||.|+|+ |..|+.+++.+.+++ +++++|.+|.+..+ ..++|++.+.+ +.+.+ .++|-|
T Consensus 144 rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~-----------g~~VpvlG~~~dL~~~v~~----~~IdeV 207 (463)
T PRK10124 144 RMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPG-----------GVSNDWAGNLQQLVEDAKA----GKIHNV 207 (463)
T ss_pred CcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccc-----------cCCCCcCCCHHHHHHHHHh----CCCCEE
Confidence 57999995 999999999998776 68999999953210 12334455544 44443 678977
Q ss_pred EEccCchh----HHHHHHHHHHcCCcEEE
Q 031341 111 IDFTDAST----VYDNVKQATAFGMRSVV 135 (161)
Q Consensus 111 IDfT~p~~----~~~~~~~al~~g~~vVi 135 (161)
+ .+.|.. ..+.+..+.+.++++.+
T Consensus 208 i-IAip~~~~~~l~ell~~~~~~~v~V~i 235 (463)
T PRK10124 208 Y-IAMSMCDGARVKKLVRQLADTTCSVLL 235 (463)
T ss_pred E-EeCCCcchHHHHHHHHHHHHcCCeEEE
Confidence 7 444432 23556688888998764
No 308
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.55 E-value=0.12 Score=45.16 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=51.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch----hhhhcCCCCCCeee-eCC-HHHHHhcccccCCccE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----GMVCDMEQPLEIPV-MSD-LTMVLGSISQSKARAV 109 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~----~~~~g~~~~~~i~v-~~d-l~~~l~~~~~~~~~DV 109 (161)
-+|.|+|+ |++|..+++.+. ..|.++. ++|+... ... .++. +.++.+ +.+ .++.. .++|+
T Consensus 6 k~v~iiG~-g~~G~~~A~~l~-~~G~~V~-~~d~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~~d~ 71 (450)
T PRK14106 6 KKVLVVGA-GVSGLALAKFLK-KLGAKVI-LTDEKEE-DQLKEALEELG----ELGIELVLGEYPEEFL------EGVDL 71 (450)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeCCch-HHHHHHHHHHH----hcCCEEEeCCcchhHh------hcCCE
Confidence 57999995 889999999887 7788866 4564321 111 1211 234433 233 23333 36999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEE
Q 031341 110 VIDFTDASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~g~~vV 134 (161)
||-.+......+.+..|.++|++++
T Consensus 72 vv~~~g~~~~~~~~~~a~~~~i~~~ 96 (450)
T PRK14106 72 VVVSPGVPLDSPPVVQAHKKGIEVI 96 (450)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEE
Confidence 8866643334456666667777664
No 309
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=95.54 E-value=0.13 Score=45.16 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=59.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
-|+.|+| +|..|..+++.+.+++ +++++|.+|.+... ... -.++|+..+.+++.+ +.++.++|.|+-+
T Consensus 126 ~rvLIvG-ag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------i~g~pVlg~~~~l~~-~i~~~~id~ViIa 195 (445)
T TIGR03025 126 RRVLIVG-TGEAARELAAALSRNPDLGYRVVGFVDDRPSD--RVE------VAGLPVLGKLDDLVE-LVRAHRVDEVIIA 195 (445)
T ss_pred CcEEEEE-CCHHHHHHHHHHhhCccCCeEEEEEEeCCccc--ccc------cCCCcccCCHHHHHH-HHHhCCCCEEEEe
Confidence 5799999 5999999999998655 68999999853211 111 246777766554321 1113678977734
Q ss_pred cCchh----HHHHHHHHHHcCCcEEE
Q 031341 114 TDAST----VYDNVKQATAFGMRSVV 135 (161)
Q Consensus 114 T~p~~----~~~~~~~al~~g~~vVi 135 (161)
.|.. ..+.+..+.++|+.+.+
T Consensus 196 -~p~~~~~~~~~ll~~~~~~gv~V~~ 220 (445)
T TIGR03025 196 -LPLSEEARILELLLQLRDLGVDVRL 220 (445)
T ss_pred -cCcccHHHHHHHHHHHHhcCCEEEE
Confidence 3432 24567888899988764
No 310
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.53 E-value=0.09 Score=45.99 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=41.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.+|||+| .|+||+.+++.+. .-|+++. ++|+..... . +..-+.++++++. .+|+|+-..
T Consensus 117 ktvGIIG-~G~IG~~va~~l~-a~G~~V~-~~Dp~~~~~----------~-~~~~~~~l~ell~------~aDiV~lh~ 175 (381)
T PRK00257 117 RTYGVVG-AGHVGGRLVRVLR-GLGWKVL-VCDPPRQEA----------E-GDGDFVSLERILE------ECDVISLHT 175 (381)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EECCccccc----------c-cCccccCHHHHHh------hCCEEEEeC
Confidence 5899999 6999999999887 5689876 456532110 0 1112468999986 699988444
No 311
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=95.53 E-value=0.15 Score=44.86 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=59.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHH---HHhcccccCCccE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV 109 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~---~l~~~~~~~~~DV 109 (161)
.-||.|+| +|..|+.+++.+.+.+ +++++|.+|.+... .+. ..++|+..+.++ .+. +.++|.
T Consensus 128 ~~rvLIiG-ag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------~~gvpVlg~~~dl~~~i~----~~~vd~ 194 (451)
T TIGR03023 128 LRRVLIVG-AGELGRRLAERLARNPELGYRVVGFFDDRPDA--RTG------VRGVPVLGKLDDLEELIR----EGEVDE 194 (451)
T ss_pred CCcEEEEe-CCHHHHHHHHHHHhCccCCcEEEEEEeCCCcc--ccc------cCCCCccCCHHHHHHHHH----hcCCCE
Confidence 35799999 5999999999998754 68999999953211 111 246677655554 444 368998
Q ss_pred EEEccCc---hhHHHHHHHHHHcCCcEEE
Q 031341 110 VIDFTDA---STVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 110 VIDfT~p---~~~~~~~~~al~~g~~vVi 135 (161)
|+.+.+. +...+.+..+.+.|+.+.+
T Consensus 195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~v 223 (451)
T TIGR03023 195 VYIALPLAAEDRILELLDALEDLTVDVRL 223 (451)
T ss_pred EEEeeCcccHHHHHHHHHHHHhcCCEEEE
Confidence 7744432 2234567788888988765
No 312
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.52 E-value=0.07 Score=44.29 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=59.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhhh-----hcCCCCCCee-----
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGMV-----CDMEQPLEIP----- 89 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~----------------~~g~~~~~~-----~g~~~~~~i~----- 89 (161)
-+|.|+|+ |+.|+-.+++|. ..|+.=.-++|-+ ..|++..+. ..+.-...+.
T Consensus 31 ~~V~VvGi-GGVGSw~veALa-RsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 31 AHVCVVGI-GGVGSWAVEALA-RSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred CcEEEEec-CchhHHHHHHHH-HcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 47999996 999999999987 5566555577721 122221111 1111011222
Q ss_pred e-eCCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEE
Q 031341 90 V-MSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 90 v-~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~g~~vVi 135 (161)
+ .+++++.+. .++|-|||+.. -..-.+.+.+|.++++|+|+
T Consensus 109 ~t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs 151 (263)
T COG1179 109 ITEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS 151 (263)
T ss_pred hCHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence 1 155677776 58999999984 34446888999999999984
No 313
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=95.50 E-value=0.044 Score=47.82 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=49.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
.++|+|+| .|.||+-+++.+. ..|..|. ..|++.. .++. .++|...|+++.++.+ ..+|+|+-+|
T Consensus 52 tl~IaIIG-fGnmGqflAetli-~aGh~li-~hsRsdy-ssaa------~~yg~~~ft~lhdlce-----rhpDvvLlct 116 (480)
T KOG2380|consen 52 TLVIAIIG-FGNMGQFLAETLI-DAGHGLI-CHSRSDY-SSAA------EKYGSAKFTLLHDLCE-----RHPDVVLLCT 116 (480)
T ss_pred ceEEEEEe-cCcHHHHHHHHHH-hcCceeE-ecCcchh-HHHH------HHhcccccccHHHHHh-----cCCCEEEEEe
Confidence 48999999 6999999999987 5677655 3443221 1222 2566677888888766 4899999776
Q ss_pred CchhHHHH
Q 031341 115 DASTVYDN 122 (161)
Q Consensus 115 ~p~~~~~~ 122 (161)
........
T Consensus 117 silsieki 124 (480)
T KOG2380|consen 117 SILSIEKI 124 (480)
T ss_pred hhhhHHHH
Confidence 54444333
No 314
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.16 Score=40.93 Aligned_cols=31 Identities=39% Similarity=0.422 Sum_probs=26.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
-++.|.|++|.+|+.+++.+. ..+.+++++.
T Consensus 2 k~vlItGasggiG~~la~~l~-~~G~~V~~~~ 32 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFK-AAGYEVWATA 32 (274)
T ss_pred CEEEEecCCChHHHHHHHHHH-HCCCEEEEEe
Confidence 468999999999999999987 5588887654
No 315
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.44 E-value=0.067 Score=47.05 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=47.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
-+|+|+|+ |.||+.+++.+.. .++.-+-+++++. .+..+++. ..+ ...++++.+.+. .+|+||.+
T Consensus 181 ~~VlViGa-G~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l~------~aDvVi~a 247 (417)
T TIGR01035 181 KKALLIGA-GEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYLA------EADIVISS 247 (417)
T ss_pred CEEEEECC-hHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHHh------hCCEEEEC
Confidence 58999995 9999999999876 4644445666542 12122221 111 112345666664 79999988
Q ss_pred cC-chhH--HHHHHHHHH
Q 031341 114 TD-ASTV--YDNVKQATA 128 (161)
Q Consensus 114 T~-p~~~--~~~~~~al~ 128 (161)
|. |... .+.+..+..
T Consensus 248 T~s~~~ii~~e~l~~~~~ 265 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALR 265 (417)
T ss_pred CCCCCceEcHHHHHHHHh
Confidence 73 3332 355655544
No 316
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.43 E-value=0.04 Score=48.07 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=61.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCC-cchhhhhcCCCCC----CeeeeCCHHHHHhcccccCCccE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVG-EDIGMVCDMEQPL----EIPVMSDLTMVLGSISQSKARAV 109 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~g-~~~~~~~g~~~~~----~i~v~~dl~~~l~~~~~~~~~DV 109 (161)
-+++|+| +|.+++.+++.+.. .|+++=+-+.+++... ....+... ..+ ++.+.+|.++++. ++|+
T Consensus 156 ~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~--~~~~~~~~v~~~~s~~eav~------~ADI 226 (379)
T PRK06199 156 KVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVA--ETYPQITNVEVVDSIEEVVR------GSDI 226 (379)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH--HhcCCCceEEEeCCHHHHHc------CCCE
Confidence 5799999 59999999999887 4678888899975311 11111111 111 3666799999985 7999
Q ss_pred EEEccCchh----HHHHH-HHHHHcCCcEE-EeCCCCC
Q 031341 110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYVPHIQ 141 (161)
Q Consensus 110 VIDfT~p~~----~~~~~-~~al~~g~~vV-igttg~~ 141 (161)
|+=+|+... ..+.+ ...++.|.||. +|...++
T Consensus 227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~eld 264 (379)
T PRK06199 227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRID 264 (379)
T ss_pred EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccCC
Confidence 995453111 11333 33567888876 5554444
No 317
>PLN02650 dihydroflavonol-4-reductase
Probab=95.41 E-value=0.07 Score=44.88 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
...+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 345899999999999999999984 5889887665
No 318
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.36 E-value=0.07 Score=43.87 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=28.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.+|.|.|++|.+|+.+++.+. ..|.+++++..+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~-~~g~~V~~~~r~ 37 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLL-QRGYTVKATVRD 37 (322)
T ss_pred CEEEEECChHHHHHHHHHHHH-HCCCEEEEEEcC
Confidence 589999999999999999998 458898877653
No 319
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=95.34 E-value=0.036 Score=48.42 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=73.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhh---hcCCC----CCC-eeeeCC-----HHHHH
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMV---CDMEQ----PLE-IPVMSD-----LTMVL 98 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~---~~~~eLvavvd~~~~g~~~~~~---~g~~~----~~~-i~v~~d-----l~~~l 98 (161)
..-+.|.||+|..|+.+++.+.. .++..+. ++.++. +++.+. .+... +.. +.+.+. ++++.
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn~--~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema 81 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRNE--KKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMA 81 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEE-EecCCH--HHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHH
Confidence 46799999999999999999885 3555543 333321 111111 11110 011 233332 45544
Q ss_pred hcccccCCccEEEEccCchhH--HHHHHHHHHcCCcEE--EeCCCCCHHHHHHHHHHhhhcCeee
Q 031341 99 GSISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMVS 159 (161)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p~~~--~~~~~~al~~g~~vV--igttg~~~e~~~~L~~~A~~~~Vv~ 159 (161)
..+-|++.+.-|--. .+.+++|+++|.|-| +|.+.|-+-...+-.+.|++++|..
T Consensus 82 ------k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYI 140 (423)
T KOG2733|consen 82 ------KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYI 140 (423)
T ss_pred ------hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEE
Confidence 367799988888655 478899999999876 6666554444456678888888754
No 320
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.34 E-value=0.23 Score=43.65 Aligned_cols=60 Identities=20% Similarity=0.101 Sum_probs=41.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+|||+| +|++|+.+++.+. .=|+++.+ +|+... .. ..++....++++++. ..|+|+...
T Consensus 152 ktvGIiG-~G~IG~~vA~~~~-~fGm~V~~-~d~~~~-~~---------~~~~~~~~~l~ell~------~sDiVslh~ 211 (409)
T PRK11790 152 KTLGIVG-YGHIGTQLSVLAE-SLGMRVYF-YDIEDK-LP---------LGNARQVGSLEELLA------QSDVVSLHV 211 (409)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCCcc-cc---------cCCceecCCHHHHHh------hCCEEEEcC
Confidence 6899999 7999999999887 45888764 554211 00 112233468999996 699988544
No 321
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.32 E-value=0.084 Score=44.09 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=30.4
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.+.++.+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus 5 ~~~~~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~r 41 (338)
T PLN00198 5 TPTGKKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTVR 41 (338)
T ss_pred cCCCCCeEEEECCchHHHHHHHHHHHH-CCCEEEEEEC
Confidence 345567899999999999999999985 5788876654
No 322
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.27 E-value=0.033 Score=47.37 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=61.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
.-+++|+| +|..++.+++.+.....++=+-+++++... ....+.... ....+.+.++.+++.. ++|+|+=+
T Consensus 128 ~~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-~~~~v~~~~~~~~av~------~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-LGFAVNTTLDAAEVAH------AANLIVTT 199 (315)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-cCCcEEEECCHHHHhc------CCCEEEEe
Confidence 35799999 599999999999988888888899875321 111121110 0123445789999885 89999954
Q ss_pred cCchhHHHHH-HHHHHcCCcEE-EeC
Q 031341 114 TDASTVYDNV-KQATAFGMRSV-VYV 137 (161)
Q Consensus 114 T~p~~~~~~~-~~al~~g~~vV-igt 137 (161)
| +... +.+ ...++.|.|+. +|.
T Consensus 200 T-~s~~-P~~~~~~l~~G~hi~~iGs 223 (315)
T PRK06823 200 T-PSRE-PLLQAEDIQPGTHITAVGA 223 (315)
T ss_pred c-CCCC-ceeCHHHcCCCcEEEecCC
Confidence 4 3322 222 23567898876 553
No 323
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.26 E-value=0.17 Score=43.10 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
||.|+|+ |..|..+++.|. ..|+.=.-++|.
T Consensus 1 kVLIvGa-GGLGs~vA~~La-~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLL-GWGVRHITFVDS 31 (307)
T ss_pred CEEEECC-CHHHHHHHHHHH-HcCCCeEEEECC
Confidence 6999996 999999999997 667776777873
No 324
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.25 E-value=0.15 Score=40.99 Aligned_cols=31 Identities=39% Similarity=0.455 Sum_probs=26.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
|.|.|++|.+|+.+++.+.+ .+.++.++..+
T Consensus 1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~ 31 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRS 31 (292)
T ss_pred CEEEcccchhhHHHHHHHHH-cCCEEEEEeCC
Confidence 57999999999999999985 57998887764
No 325
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.24 E-value=0.13 Score=45.42 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=48.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
-||.|+|+ |..|..+++.+. ..+.+++ ++|... .. ....+.+ .+.|+.++..-...+. ..+|+||..
T Consensus 17 ~~v~viG~-G~~G~~~A~~L~-~~G~~V~-~~d~~~~~~~~~~~~~l---~~~gv~~~~~~~~~~~-----~~~D~Vv~s 85 (480)
T PRK01438 17 LRVVVAGL-GVSGFAAADALL-ELGARVT-VVDDGDDERHRALAAIL---EALGATVRLGPGPTLP-----EDTDLVVTS 85 (480)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeCCchhhhHHHHHHH---HHcCCEEEECCCcccc-----CCCCEEEEC
Confidence 47999995 999999988876 6788855 566321 11 1111111 2446666522111122 368988855
Q ss_pred cCchhHHHHHHHHHHcCCcE
Q 031341 114 TDASTVYDNVKQATAFGMRS 133 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~v 133 (161)
+--....+.+..+.++|+++
T Consensus 86 ~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 86 PGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred CCcCCCCHHHHHHHHCCCee
Confidence 42112234455566667665
No 326
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.22 E-value=0.044 Score=47.30 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=25.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~ 69 (161)
-+|.|+||+|.||+.+++.+....+. +|+ ++++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R 189 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR 189 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence 57999999999999999999755443 444 4454
No 327
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.20 E-value=0.33 Score=42.56 Aligned_cols=86 Identities=17% Similarity=0.136 Sum_probs=52.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeee-CC-HHHHHhcccccCCccEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SD-LTMVLGSISQSKARAVVI 111 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~-~d-l~~~l~~~~~~~~~DVVI 111 (161)
+-||.|+| .|+.|...++.+....+ .++. +.|.... ....+.+ .. ++.++ .. -.+.+. ++|+||
T Consensus 7 ~~~v~viG-~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~-~~~~~~l---~~-g~~~~~g~~~~~~~~------~~d~vV 73 (438)
T PRK04663 7 IKNVVVVG-LGITGLSVVKHLRKYQPQLTVK-VIDTRET-PPGQEQL---PE-DVELHSGGWNLEWLL------EADLVV 73 (438)
T ss_pred CceEEEEe-ccHHHHHHHHHHHhcCCCCeEE-EEeCCCC-chhHHHh---hc-CCEEEeCCCChHHhc------cCCEEE
Confidence 45799999 59999999999997765 7765 6774321 1111112 12 66553 21 223343 689877
Q ss_pred EccC--chhHHHHHHHHHHcCCcEEE
Q 031341 112 DFTD--ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 112 DfT~--p~~~~~~~~~al~~g~~vVi 135 (161)
.|+ |. ..+.+..|.++|+|++.
T Consensus 74 -~SpgI~~-~~p~~~~a~~~gi~i~~ 97 (438)
T PRK04663 74 -TNPGIAL-ATPEIQQVLAAGIPVVG 97 (438)
T ss_pred -ECCCCCC-CCHHHHHHHHCCCcEEE
Confidence 552 33 34566777788888763
No 328
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=95.17 E-value=0.09 Score=45.36 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=57.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC--HHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d--l~~~l~~~~~~~~~DVVID 112 (161)
..+|.|+|++|..|...++.+. +-++..+..+.+. ...+..+.+|.. .+.=|++ +.+.+.... ..++|+|+|
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk-~~~~~~v~t~~s~-e~~~l~k~lGAd---~vvdy~~~~~~e~~kk~~-~~~~DvVlD 231 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAK-HAGAIKVVTACSK-EKLELVKKLGAD---EVVDYKDENVVELIKKYT-GKGVDVVLD 231 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHH-hcCCcEEEEEccc-chHHHHHHcCCc---EeecCCCHHHHHHHHhhc-CCCccEEEE
Confidence 3689999999999999998765 5555444444432 234444444421 2222444 333333110 246999999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCC
Q 031341 113 FTDASTVYDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vVigtt 138 (161)
|-...............|...++++.
T Consensus 232 ~vg~~~~~~~~~~l~~~g~~~~i~~~ 257 (347)
T KOG1198|consen 232 CVGGSTLTKSLSCLLKGGGGAYIGLV 257 (347)
T ss_pred CCCCCccccchhhhccCCceEEEEec
Confidence 98665555555555566655566554
No 329
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=95.15 E-value=0.11 Score=43.12 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=28.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.+|.|.|++|.+|+.+++.+.+ .+.++++.+++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECC
Confidence 4799999999999999999885 58898887764
No 330
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.15 E-value=0.21 Score=41.74 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=56.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCcch-----------hh-----hhcCCCCCCeeee---
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGEDI-----------GM-----VCDMEQPLEIPVM--- 91 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-----~g~~~-----------~~-----~~g~~~~~~i~v~--- 91 (161)
.+|.|+|+ |..|..+++.|. ..|+.=+-++|.+. .++.. .+ +..+.....+..+
T Consensus 31 s~VlVvG~-GGVGs~vae~La-r~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~ 108 (268)
T PRK15116 31 AHICVVGI-GGVGSWAAEALA-RTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF 108 (268)
T ss_pred CCEEEECc-CHHHHHHHHHHH-HcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence 68999995 999999999998 44554455777321 11100 00 0011101112111
Q ss_pred ---CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEe
Q 031341 92 ---SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVY 136 (161)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~g~~vVig 136 (161)
++.++++. .++|+|||+... ..-......|.++++|+|..
T Consensus 109 i~~e~~~~ll~-----~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 109 ITPDNVAEYMS-----AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred cChhhHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 23445553 368999998744 55567778899999998843
No 331
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.14 E-value=0.24 Score=43.11 Aligned_cols=85 Identities=20% Similarity=0.172 Sum_probs=50.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCCCCCCeeeeCC-HHHHHhcccccCCccEEEE
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVID 112 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~---~~~g~~~~~~i~v~~d-l~~~l~~~~~~~~~DVVID 112 (161)
||.|+|. |+.|..+++.+. ..|.++. +.|.... .... .++. ...|+.++.. -.+.+. ++|+||
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~-~~G~~V~-~sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~~~~~~------~~d~vv- 67 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLH-KKGAEVT-VTDLKPN-EELEPSMGQLR--LNEGSVLHTGLHLEDLN------NADLVV- 67 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHH-HCCCEEE-EEeCCCC-ccchhHHHHHh--hccCcEEEecCchHHhc------cCCEEE-
Confidence 5899994 999998888776 7788855 6774321 1111 1110 0235655421 133342 689887
Q ss_pred ccC--chhHHHHHHHHHHcCCcEEE
Q 031341 113 FTD--ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 113 fT~--p~~~~~~~~~al~~g~~vVi 135 (161)
.|+ |.. .+.+.+|.++|++++.
T Consensus 68 ~sp~i~~~-~p~~~~a~~~~i~i~~ 91 (433)
T TIGR01087 68 KSPGIPPD-HPLVQAAAKRGIPVVG 91 (433)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEE
Confidence 552 433 3566777788888764
No 332
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.12 E-value=0.11 Score=44.41 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=26.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEec
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDS 69 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~------eLvavvd~ 69 (161)
.|+||+|+|++|.+|..++-.+...+=+ || ..+|.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el-~L~Di 42 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVL-HLLDI 42 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEE-EEEec
Confidence 4799999997799999999888755422 44 47775
No 333
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.11 E-value=0.046 Score=46.06 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=28.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
+||.|.|++|.+|+.+++.+.+ .+.+++++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence 6999999999999999999985 5889887655
No 334
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.09 E-value=0.26 Score=41.83 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=41.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+|+|+| +|++|+++++.+. .=|+++.+ +++... .. ... -+.++++++. ..|+|+...
T Consensus 148 ktvgIiG-~G~IG~~va~~l~-~fg~~V~~-~~~~~~-~~----------~~~-~~~~l~ell~------~sDiv~l~~ 205 (314)
T PRK06932 148 STLGVFG-KGCLGTEVGRLAQ-ALGMKVLY-AEHKGA-SV----------CRE-GYTPFEEVLK------QADIVTLHC 205 (314)
T ss_pred CEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCcc-cc----------ccc-ccCCHHHHHH------hCCEEEEcC
Confidence 6999999 7999999999886 55888875 454211 00 011 1468999996 699998555
No 335
>PRK12320 hypothetical protein; Provisional
Probab=95.08 E-value=0.14 Score=48.13 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=51.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~-~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|||.|.|++|.+|+.+++.+. ..+.++.++........+ ..++. ..++.- ..+.+++ .++|+||.+.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll-~~G~~Vi~ldr~~~~~~~~~ve~v----~~Dl~d-~~l~~al------~~~D~VIHLA 68 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLI-AAGHTVSGIAQHPHDALDPRVDYV----CASLRN-PVLQELA------GEADAVIHLA 68 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHH-hCCCEEEEEeCChhhcccCCceEE----EccCCC-HHHHHHh------cCCCEEEEcC
Confidence 589999999999999999987 457888876543211000 00000 011100 1133344 3689999887
Q ss_pred Cch----------hHHHHHHHHHHcCCcEEE
Q 031341 115 DAS----------TVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 115 ~p~----------~~~~~~~~al~~g~~vVi 135 (161)
.+. .....+..|.++|+.+|.
T Consensus 69 a~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~ 99 (699)
T PRK12320 69 PVDTSAPGGVGITGLAHVANAAARAGARLLF 99 (699)
T ss_pred ccCccchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence 422 122345677788887664
No 336
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=95.08 E-value=0.059 Score=45.13 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
|||.|.|++|.+|+.+++.+.+. +.+.+..++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence 58999999999999999999865 444333444
No 337
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.04 E-value=0.45 Score=33.24 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=55.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC-
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD- 115 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~- 115 (161)
+|+|+|+--.+-..+-+.+. .-|.++... .++. +.. + -...++..+. .+|+||-+|.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~-~~G~~~~~h-g~~~-~~~---------~----~~~~l~~~i~------~aD~VIv~t~~ 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILE-KYGGKLIHH-GRDG-GDE---------K----KASRLPSKIK------KADLVIVFTDY 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHH-HcCCEEEEE-ecCC-CCc---------c----chhHHHHhcC------CCCEEEEEeCC
Confidence 58999933388887776665 577887766 3221 110 0 0012455553 7899888884
Q ss_pred -chhH-HHHHHHHHHcCCcEEEeC-CCCCHHHHHHHHHH
Q 031341 116 -ASTV-YDNVKQATAFGMRSVVYV-PHIQLETVSALSAF 151 (161)
Q Consensus 116 -p~~~-~~~~~~al~~g~~vVigt-tg~~~e~~~~L~~~ 151 (161)
.+.. ...-..|.++++|++.-. ++++ .-.+.|.++
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~-~l~~~l~~~ 96 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS-SLERALERL 96 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEECCCCHH-HHHHHHHhh
Confidence 3333 445578889999999876 5654 233444443
No 338
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.03 E-value=0.16 Score=46.89 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=24.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEV 63 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eL 63 (161)
.|||.|.|++|.+|+.+++.+.. .+.++
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~-~g~~v 407 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEK-QGIAY 407 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHh-CCCeE
Confidence 48999999999999999998874 46776
No 339
>PLN02306 hydroxypyruvate reductase
Probab=95.02 E-value=0.4 Score=42.03 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=42.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh--hhhcC--C----CCCCeeeeCCHHHHHhcccccCCc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG--MVCDM--E----QPLEIPVMSDLTMVLGSISQSKAR 107 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~--~~~g~--~----~~~~i~v~~dl~~~l~~~~~~~~~ 107 (161)
-+|+|+| +|++|+.+++.+...=|+++. ++|+........ ...+. . .+.++..+.++++++. ..
T Consensus 166 ktvGIiG-~G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------~s 237 (386)
T PLN02306 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------EA 237 (386)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh------hC
Confidence 6899999 799999999987534488876 556432100000 00100 0 0011222468999996 69
Q ss_pred cEEEEcc
Q 031341 108 AVVIDFT 114 (161)
Q Consensus 108 DVVIDfT 114 (161)
|+|+...
T Consensus 238 DiV~lh~ 244 (386)
T PLN02306 238 DVISLHP 244 (386)
T ss_pred CEEEEeC
Confidence 9988544
No 340
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=95.02 E-value=0.031 Score=43.53 Aligned_cols=73 Identities=23% Similarity=0.195 Sum_probs=42.0
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~-~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
|.|+|++|.+|+.+++.+. ..+.+++.+..+.............. ...++.-..++++++.. .++|+||.+..
T Consensus 1 IlI~GatG~iG~~l~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLL-KKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHH-HcCCccccccccccccccccccceEEEEEeeccccccccccccc----cCceEEEEeec
Confidence 6899999999999999998 66777775555432111000000000 01111112345566653 46899999864
No 341
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.01 E-value=0.096 Score=46.06 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=47.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
.+|+|+|+ |.||+.+++.+. ..+++-+.+++++. .+..+++. ..+ +..+.++.+.+. .+|+||.+
T Consensus 183 ~~vlViGa-G~iG~~~a~~L~-~~G~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVI~a 249 (423)
T PRK00045 183 KKVLVIGA-GEMGELVAKHLA-EKGVRKITVANRTL--ERAEELAE---EFGGEAIPLDELPEALA------EADIVISS 249 (423)
T ss_pred CEEEEECc-hHHHHHHHHHHH-HCCCCeEEEEeCCH--HHHHHHHH---HcCCcEeeHHHHHHHhc------cCCEEEEC
Confidence 68999995 999999999887 45664455667542 12122221 122 222345555553 79999988
Q ss_pred cC-chhH--HHHHHHHH
Q 031341 114 TD-ASTV--YDNVKQAT 127 (161)
Q Consensus 114 T~-p~~~--~~~~~~al 127 (161)
|. |... .+.+..++
T Consensus 250 T~s~~~~i~~~~l~~~~ 266 (423)
T PRK00045 250 TGAPHPIIGKGMVERAL 266 (423)
T ss_pred CCCCCcEEcHHHHHHHH
Confidence 84 3332 34555544
No 342
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=95.00 E-value=0.24 Score=43.29 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=61.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh---------------hcCCCCCCeeee---C
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV---------------CDMEQPLEIPVM---S 92 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~-~eLvavvd~~~~g---~~~~~~---------------~g~~~~~~i~v~---~ 92 (161)
|.|+.|.|.||.+|...++.+.+.|+ +++++.....+.. +.+.++ +... ..++.++ .
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~-~~~~~v~~G~~ 79 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDL-LPGTEVLVGEE 79 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhh-ccCceEEecHH
Confidence 46899999999999999999998766 5899988742110 000000 0000 0022232 2
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~g~~vVigt 137 (161)
.+.++.+ ..++|+|+..-.-.....-..+++++|+.+-..+
T Consensus 80 ~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLAN 120 (385)
T COG0743 80 GLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALAN 120 (385)
T ss_pred HHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeecc
Confidence 2334443 3678988865555555666778899999988754
No 343
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.97 E-value=0.17 Score=40.51 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=25.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav 66 (161)
|++.|.|++|.+|+.+++.+. ..+.+++..
T Consensus 1 m~vlItGas~gIG~aia~~l~-~~G~~V~~~ 30 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELL-KKGARVVIS 30 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHH-HcCCEEEEE
Confidence 589999999999999999997 467886544
No 344
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=94.97 E-value=0.092 Score=42.69 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=37.4
Q ss_pred EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 40 ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|.|++|.+|+.+++.+.+ .+.+++.+.++.. .++.-..++++++.. .++|+||.+.
T Consensus 2 ItGa~GfiG~~l~~~L~~-~g~~v~~~~~~~~--------------~Dl~~~~~l~~~~~~----~~~d~Vih~A 57 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEA-LGFTNLVLRTHKE--------------LDLTRQADVEAFFAK----EKPTYVILAA 57 (306)
T ss_pred cccCCCcccHHHHHHHHh-CCCcEEEeecccc--------------CCCCCHHHHHHHHhc----cCCCEEEEee
Confidence 789999999999999975 4666664443211 122223456666653 4689999885
No 345
>PRK05865 hypothetical protein; Provisional
Probab=94.95 E-value=0.13 Score=49.50 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=27.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
|||.|.|++|.+|+.+++.+. ..+.+++++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll-~~G~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLL-SQGHEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCcCEEEEEEC
Confidence 589999999999999999987 46788887654
No 346
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.95 E-value=0.05 Score=45.63 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=40.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-e-eCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V-MSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v-~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
-+|+|+| +|+||+.+++.+... ++++. +++++. .+..... ..+.. + ++++++.+. +.|+||..
T Consensus 152 k~v~IiG-~G~iG~avA~~L~~~-G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDiVint 216 (287)
T TIGR02853 152 SNVMVLG-FGRTGMTIARTFSAL-GARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKVA------EIDIVINT 216 (287)
T ss_pred CEEEEEc-ChHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHhc------cCCEEEEC
Confidence 5899999 599999999999754 67765 566542 1111111 11221 1 345666664 68888854
Q ss_pred cCchh
Q 031341 114 TDAST 118 (161)
Q Consensus 114 T~p~~ 118 (161)
+ |..
T Consensus 217 ~-P~~ 220 (287)
T TIGR02853 217 I-PAL 220 (287)
T ss_pred C-ChH
Confidence 4 544
No 347
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.94 E-value=0.29 Score=41.42 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=41.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+|||+| +|++|+.+++.+. .=|+++.+ +|+.. ... ..++. +.++++++. ..|+|+...
T Consensus 146 ktvGIiG-~G~IG~~vA~~~~-~fgm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh~ 204 (311)
T PRK08410 146 KKWGIIG-LGTIGKRVAKIAQ-AFGAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIHA 204 (311)
T ss_pred CEEEEEC-CCHHHHHHHHHHh-hcCCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence 6899999 7999999999886 45788764 56531 110 11222 458999996 689988554
No 348
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.93 E-value=0.16 Score=47.36 Aligned_cols=98 Identities=13% Similarity=0.204 Sum_probs=59.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------C---Ccchhhhh-----cCCCCCC---
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------V---GEDIGMVC-----DMEQPLE--- 87 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~---g~~~~~~~-----g~~~~~~--- 87 (161)
..||.|+|| |..|..+++.|. .-|+.=..++|... . |+...+.+ .+.....
T Consensus 338 ~~kVLIvGa-GGLGs~VA~~La-~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~ 415 (664)
T TIGR01381 338 QLKVLLLGA-GTLGCNVARCLI-GWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATG 415 (664)
T ss_pred cCeEEEECC-cHHHHHHHHHHH-HcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEE
Confidence 479999996 999999999987 56776666788320 0 22211111 0000001
Q ss_pred ----ee-----eeC-----------CHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCC
Q 031341 88 ----IP-----VMS-----------DLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHI 140 (161)
Q Consensus 88 ----i~-----v~~-----------dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~g~~vVigttg~ 140 (161)
+| +.. ++++++. ..|+|+|++.. ++-+-.-..|.++++++|.+.-||
T Consensus 416 ~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGf 483 (664)
T TIGR01381 416 HRLTVPMPGHPIDEKDVPELEKDIARLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGF 483 (664)
T ss_pred eeeeeccccccCCchhhhhccccHHHHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 10 111 2345554 78999999954 443455578899999999775454
No 349
>PLN00203 glutamyl-tRNA reductase
Probab=94.92 E-value=0.088 Score=47.85 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=48.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeeCCHHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i--~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
.-||+|+|+ |.||+.+++.+.. .+++-+-+++++. .+...+........+ ..++++.+++. ++|+||-
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al~------~aDVVIs 335 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACAA------EADVVFT 335 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHHh------cCCEEEE
Confidence 468999995 9999999999875 5665455667543 222222210000112 22356666664 7999997
Q ss_pred cc---CchhHHHHHHHHH
Q 031341 113 FT---DASTVYDNVKQAT 127 (161)
Q Consensus 113 fT---~p~~~~~~~~~al 127 (161)
+| .|-...++++.+.
T Consensus 336 AT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 336 STSSETPLFLKEHVEALP 353 (519)
T ss_pred ccCCCCCeeCHHHHHHhh
Confidence 76 2333356666554
No 350
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.90 E-value=0.47 Score=41.97 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=45.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCC------cchhhhhcCCCCCC-eeeeCCHHHHHhcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVG------EDIGMVCDMEQPLE-IPVMSDLTMVLGSI 101 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------~~g------~~~~~~~g~~~~~~-i~v~~dl~~~l~~~ 101 (161)
|||.|+| +|+.|-.....+. .-|.+++++ |.. ..| .-+.+++-.....| ...++|+++++.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA-~~GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~-- 75 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLA-ELGHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK-- 75 (414)
T ss_pred CceEEEC-CchHHHHHHHHHH-HcCCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence 7999999 7999999888776 557887754 421 011 11333332111122 677889998885
Q ss_pred cccCCccEEEEcc
Q 031341 102 SQSKARAVVIDFT 114 (161)
Q Consensus 102 ~~~~~~DVVIDfT 114 (161)
..|+++.++
T Consensus 76 ----~adv~fIav 84 (414)
T COG1004 76 ----DADVVFIAV 84 (414)
T ss_pred ----cCCEEEEEc
Confidence 789988776
No 351
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.89 E-value=0.054 Score=47.79 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=43.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-||.|+| +|.||+.+++.+.. .+..-+-+++++. .+...+........+.-++++.+.+. .+|+||.+|.
T Consensus 182 kkvlviG-aG~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La~~~~~~~~~~~~~l~~~l~------~aDiVI~aT~ 251 (414)
T PRK13940 182 KNVLIIG-AGQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKITSAFRNASAHYLSELPQLIK------KADIIIAAVN 251 (414)
T ss_pred CEEEEEc-CcHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHHHhcCCeEecHHHHHHHhc------cCCEEEECcC
Confidence 5899999 59999999999974 5655556777653 12222221000011222456666664 7999997773
No 352
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.85 E-value=0.14 Score=43.63 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=26.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcE-----EEEEEec
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGME-----VAGAIDS 69 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e-----Lvavvd~ 69 (161)
+|.||+|+|++|++|..++-.+....=+. =+..+|.
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 36899999977999999998877433332 2457785
No 353
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=94.84 E-value=0.065 Score=45.53 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=49.5
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCCCeeee---CCHHHHHhcccccCC
Q 031341 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKA 106 (161)
Q Consensus 31 ~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~-~g~~~~~~~g~~~~~~i~v~---~dl~~~l~~~~~~~~ 106 (161)
..++..||+|.||.|++|+-+.-.+...|.+.-.+.+|... .|.. .++.-+.....+.=| +.+++++. +
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVa-aDlSHI~T~s~V~g~~g~~~L~~al~------~ 96 (345)
T KOG1494|consen 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVA-ADLSHINTNSSVVGFTGADGLENALK------G 96 (345)
T ss_pred cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCccc-ccccccCCCCceeccCChhHHHHHhc------C
Confidence 34567999999999999999998888889999999999422 2211 122212111112112 46777774 8
Q ss_pred ccEEEEc
Q 031341 107 RAVVIDF 113 (161)
Q Consensus 107 ~DVVIDf 113 (161)
.|+||.-
T Consensus 97 advVvIP 103 (345)
T KOG1494|consen 97 ADVVVIP 103 (345)
T ss_pred CCEEEec
Confidence 9977753
No 354
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.84 E-value=0.17 Score=41.88 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=27.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.+|.|.|++|.+|+.+++.+. ..+.++++...
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~-~~G~~V~~~~r 37 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLL-FRGYTINATVR 37 (325)
T ss_pred CEEEEECCchHHHHHHHHHHH-HCCCEEEEEEc
Confidence 589999999999999999997 45888876543
No 355
>PLN00106 malate dehydrogenase
Probab=94.83 E-value=0.23 Score=42.47 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=33.2
Q ss_pred EeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 26 ~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
-|-..-...+.||+|+|++|++|+.++-.+...+-..=.-.+|..
T Consensus 9 ~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~ 53 (323)
T PLN00106 9 ACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIA 53 (323)
T ss_pred ccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 355555566679999998899999999988855555445577743
No 356
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.83 E-value=0.36 Score=42.33 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=50.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeeeC--CHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~-~~i~v~~--dl~~~l~~~~~~~~~DVVID 112 (161)
=-|+|+|. |+.|..+++.+. ..|.++. +.|.........++. .. .|+.++. .-.+.+. ++|+||
T Consensus 7 ~~~~v~G~-G~sG~s~a~~L~-~~G~~v~-~~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~------~~d~vV- 73 (448)
T PRK03803 7 GLHIVVGL-GKTGLSVVRFLA-RQGIPFA-VMDSREQPPGLDTLA---REFPDVELRCGGFDCELLV------QASEII- 73 (448)
T ss_pred CeEEEEee-cHhHHHHHHHHH-hCCCeEE-EEeCCCCchhHHHHH---hhcCCcEEEeCCCChHHhc------CCCEEE-
Confidence 35899995 999999777665 6788754 677432111111121 11 3666642 1223343 689887
Q ss_pred ccC--chhHHHHHHHHHHcCCcEEE
Q 031341 113 FTD--ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 113 fT~--p~~~~~~~~~al~~g~~vVi 135 (161)
.|+ |.. .+.+..|.++|++++.
T Consensus 74 ~sp~i~~~-~p~~~~a~~~~i~i~~ 97 (448)
T PRK03803 74 ISPGLALD-TPALRAAAAMGIEVIG 97 (448)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEE
Confidence 553 332 4566777788888764
No 357
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.82 E-value=0.23 Score=38.89 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=26.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-+|.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~-~G~~V~~~~r 33 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLE-RGWQVTATVR 33 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHh-CCCEEEEEeC
Confidence 4699999999999999999984 5888776554
No 358
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=94.81 E-value=0.071 Score=45.48 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=49.1
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCcc---EEEEcc
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT 114 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~D---VVIDfT 114 (161)
.+|.|++.++||+.++.+. ..|+.++ .+.|+.. ++... -.++++. .++. +++|||
T Consensus 52 AVVTGaTDGIGKayA~eLA-krG~nvv-LIsRt~~--KL~~v-----------~kEI~~~-------~~vev~~i~~Dft 109 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELA-KRGFNVV-LISRTQE--KLEAV-----------AKEIEEK-------YKVEVRIIAIDFT 109 (312)
T ss_pred EEEECCCCcchHHHHHHHH-HcCCEEE-EEeCCHH--HHHHH-----------HHHHHHH-------hCcEEEEEEEecC
Confidence 5678999999999999998 5899955 6665431 11110 0122221 2222 578899
Q ss_pred CchhHHHHHHHHHHc-CCcEEEeCCC
Q 031341 115 DASTVYDNVKQATAF-GMRSVVYVPH 139 (161)
Q Consensus 115 ~p~~~~~~~~~al~~-g~~vVigttg 139 (161)
.++..++.++..++. .+-+++=..|
T Consensus 110 ~~~~~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 110 KGDEVYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred CCchhHHHHHHHhcCCceEEEEeccc
Confidence 888877776655543 3566654444
No 359
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.80 E-value=0.28 Score=39.80 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-+|.|.|++|.+|+.+++.+. ..|.+++.+..
T Consensus 5 k~vlItGasggiG~~la~~l~-~~G~~Vi~~~r 36 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQ-SDGWRVFATCR 36 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEEC
Confidence 369999999999999999987 56888776543
No 360
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.79 E-value=0.34 Score=38.19 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=26.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
||+.|.|++|++|+.+++.+. ..+.+++.+..
T Consensus 1 m~vlItGas~giG~~ia~~l~-~~g~~v~~~~r 32 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFR-NDGHKVTLVGA 32 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHH-HCCCEEEEEeC
Confidence 489999999999999999997 56788776543
No 361
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=94.77 E-value=0.25 Score=46.33 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
..-||+|+|+ |.||+.|+..+....|++++ ++|.
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~-l~d~ 336 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGIPVR-IKDI 336 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCCeEE-EEeC
Confidence 4468999995 99999999877656788865 6774
No 362
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=94.73 E-value=0.26 Score=45.43 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=28.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI 67 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvavv 67 (161)
.++||.|.|++|.+|+.+++.|.+. ++.+++++.
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 4579999999999999999999865 578887654
No 363
>PLN02240 UDP-glucose 4-epimerase
Probab=94.71 E-value=0.31 Score=40.62 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
.||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLL-AGYKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 5899999999999999999975 578887764
No 364
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=94.69 E-value=0.073 Score=46.37 Aligned_cols=96 Identities=23% Similarity=0.273 Sum_probs=62.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhhhh-cCCCCCCeeee--
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGMVC-DMEQPLEIPVM-- 91 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~----~~~~~-g~~~~~~i~v~-- 91 (161)
.-.|.|+|| |+.|.-.+..+. ..|+-=.|++|.+. .|+. +..++ .......+..|
T Consensus 66 ~s~VLVVGa-GGLGcPa~~YLa-aaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~ 143 (427)
T KOG2017|consen 66 NSSVLVVGA-GGLGCPAAQYLA-AAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNE 143 (427)
T ss_pred CccEEEEcc-CCCCCHHHHHHH-HcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechh
Confidence 368999996 999999998876 77888888888431 1111 11111 11111122222
Q ss_pred ----CCHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCC
Q 031341 92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVigtt 138 (161)
++..+++. ..|||.|+| ++.+-+=.-..|..-|+|+|+|..
T Consensus 144 ~L~~sNa~~Ii~------~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa 189 (427)
T KOG2017|consen 144 FLSSSNAFDIIK------QYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA 189 (427)
T ss_pred hccchhHHHHhh------ccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence 44556664 799999999 455555556789999999999864
No 365
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.66 E-value=0.17 Score=44.80 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=29.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
++..|.|+|++|+.|+.+++.+. ..++.+-+++..
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~ll-krgf~vra~VRd 112 (411)
T KOG1203|consen 78 KPTTVLVVGATGKVGRRIVKILL-KRGFSVRALVRD 112 (411)
T ss_pred CCCeEEEecCCCchhHHHHHHHH-HCCCeeeeeccC
Confidence 46899999999999999999987 556887777764
No 366
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.15 Score=44.14 Aligned_cols=93 Identities=16% Similarity=0.219 Sum_probs=60.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc--------hhhhhcCCCCCCe--ee
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED--------IGMVCDMEQPLEI--PV 90 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~--------~~~~~g~~~~~~i--~v 90 (161)
=|.|+|| |..|+-++.++. ..|++=.-++|.+. .|.+ ..+++.+- +.+. ..
T Consensus 76 yVVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~-eIdar~~l 152 (430)
T KOG2018|consen 76 YVVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWC-EIDARNML 152 (430)
T ss_pred EEEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccc-eecHHHhh
Confidence 3899996 999999999887 66888888888321 1111 11111110 1110 11
Q ss_pred --eCCHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeC
Q 031341 91 --MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 91 --~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~g~~vVigt 137 (161)
.++-++++. .+||-|+|+- +-+.-.+.+.+|-++|++|+.-|
T Consensus 153 ~~~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~ 197 (430)
T KOG2018|consen 153 WTSSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST 197 (430)
T ss_pred cCCCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc
Confidence 144556665 5899999987 45566799999999999998643
No 367
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.58 E-value=0.2 Score=42.56 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=59.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVIDf 113 (161)
=+|.|.|++|..|...++.+. .-+...++++.++.. .+...-+|.. -+.-|. |+.+.+.++.....+|+|+|.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk-~~G~~~v~~~~s~~k-~~~~~~lGAd---~vi~y~~~~~~~~v~~~t~g~gvDvv~D~ 218 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAK-ALGATVVAVVSSSEK-LELLKELGAD---HVINYREEDFVEQVRELTGGKGVDVVLDT 218 (326)
T ss_pred CEEEEecCCchHHHHHHHHHH-HcCCcEEEEecCHHH-HHHHHhcCCC---EEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence 469999999999999888765 555466666664321 1111112210 011122 244444332223469999999
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCC
Q 031341 114 TDASTVYDNVKQATAFGMRSVVYVPH 139 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vVigttg 139 (161)
...+...+.+......|.-+.+|.++
T Consensus 219 vG~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 219 VGGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCHHHHHHHHHHhccCCEEEEEecCC
Confidence 88888877666666667776777754
No 368
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.56 E-value=0.34 Score=42.71 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=50.4
Q ss_pred eeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDf 113 (161)
.||.|+|. |+.|.. +++.+. ..|.++. +.|.... ....++ .+.|+.++. ...+.+. ++|+|| .
T Consensus 8 ~~v~viG~-G~sG~s~~a~~L~-~~G~~V~-~~D~~~~-~~~~~l----~~~gi~~~~~~~~~~~~------~~d~vv-~ 72 (461)
T PRK00421 8 KRIHFVGI-GGIGMSGLAEVLL-NLGYKVS-GSDLKES-AVTQRL----LELGAIIFIGHDAENIK------DADVVV-Y 72 (461)
T ss_pred CEEEEEEE-chhhHHHHHHHHH-hCCCeEE-EECCCCC-hHHHHH----HHCCCEEeCCCCHHHCC------CCCEEE-E
Confidence 57999995 999999 577665 7788864 5774321 122222 134665542 2223342 689887 5
Q ss_pred cC--chhHHHHHHHHHHcCCcEEE
Q 031341 114 TD--ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 114 T~--p~~~~~~~~~al~~g~~vVi 135 (161)
|+ |. ..+.+..|.++|++++.
T Consensus 73 spgi~~-~~~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 73 SSAIPD-DNPELVAARELGIPVVR 95 (461)
T ss_pred CCCCCC-CCHHHHHHHHCCCcEEe
Confidence 52 33 23456667778888754
No 369
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.54 E-value=0.21 Score=44.40 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=51.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVI 111 (161)
++-||.|+| .|++|+.+++.+. ..+.+ |-+.|+... +..+++ .+.|+.++. +..+.+. ++|+||
T Consensus 14 ~~~~v~v~G-~G~sG~a~a~~L~-~~G~~-V~~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~~------~~d~vV 79 (473)
T PRK00141 14 LSGRVLVAG-AGVSGRGIAAMLS-ELGCD-VVVADDNET--ARHKLI---EVTGVADISTAEASDQLD------SFSLVV 79 (473)
T ss_pred cCCeEEEEc-cCHHHHHHHHHHH-HCCCE-EEEECCChH--HHHHHH---HhcCcEEEeCCCchhHhc------CCCEEE
Confidence 445899999 5999999999886 66675 456775321 112221 134666643 2233342 688887
Q ss_pred EccC--chhHHHHHHHHHHcCCcEE
Q 031341 112 DFTD--ASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 112 DfT~--p~~~~~~~~~al~~g~~vV 134 (161)
.|+ |... +.+.+|.++|++++
T Consensus 80 -~Spgi~~~~-p~~~~a~~~gi~v~ 102 (473)
T PRK00141 80 -TSPGWRPDS-PLLVDAQSQGLEVI 102 (473)
T ss_pred -eCCCCCCCC-HHHHHHHHCCCcee
Confidence 553 3332 45566677777754
No 370
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=94.52 E-value=0.37 Score=42.42 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=54.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC--HHHHHhcccccCCccEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV 110 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d--l~~~l~~~~~~~~~DVV 110 (161)
+-|+.|+| +|..|+.+++.+.+++ +++++|.+|.+... .+. .-.++|+..+ +.+.+. +.++|.|
T Consensus 125 ~rrvlIiG-ag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~--~~~-----~i~g~pVlg~~~l~~~i~----~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIG-AGQNAAILYRALQSNPQLGLRPLAVVDTDPAA--SGR-----LLTGLPVVGADDALRLYA----RTRYAYV 192 (456)
T ss_pred CceEEEEe-CCHHHHHHHHHHhhCccCCcEEEEEEeCCccc--ccc-----ccCCCcccChhHHHHHHH----hCCCCEE
Confidence 35799999 5999999999987654 68999999953211 110 0235666644 334443 2578866
Q ss_pred EEccCc----hhHHHHHHHHHHcCC-cEE
Q 031341 111 IDFTDA----STVYDNVKQATAFGM-RSV 134 (161)
Q Consensus 111 IDfT~p----~~~~~~~~~al~~g~-~vV 134 (161)
+ .+.| +...+.+..+.+.++ .+.
T Consensus 193 i-IAip~~~~~~~~~ll~~l~~~~v~~V~ 220 (456)
T TIGR03022 193 I-VAMPGTQAEDMARLVRKLGALHFRNVL 220 (456)
T ss_pred E-EecCCccHHHHHHHHHHHHhCCCeEEE
Confidence 6 3444 233456667777787 443
No 371
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=94.51 E-value=0.092 Score=44.00 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
+|.|.|++|.+|+.+++.+.. .+.+++++..+
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~ 33 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLE-KGYEVHGLIRR 33 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEecC
Confidence 789999999999999999984 58898876543
No 372
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=94.50 E-value=0.11 Score=43.43 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=28.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
..+|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~-~G~~V~~~~r~ 39 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLS-KGYEVHGIIRR 39 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHH-CCCEEEEEecc
Confidence 36899999999999999999984 58898877553
No 373
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.49 E-value=1.2 Score=37.60 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=25.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
+||+|+|+ |.||..++..+....-.+ +.++|.
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi 33 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDV 33 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 59999995 999999999887543336 667885
No 374
>PRK06988 putative formyltransferase; Provisional
Probab=94.47 E-value=0.11 Score=44.16 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=47.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCc----chhhhhcCCCCCCeeeeC--C-----HHHHHhcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGE----DIGMVCDMEQPLEIPVMS--D-----LTMVLGSI 101 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--~~g~----~~~~~~g~~~~~~i~v~~--d-----l~~~l~~~ 101 (161)
||||++.| ++.+|...++.|.+ .++++++|+-.. ..++ ++.+++ .+.++|++. + +.+.+.+
T Consensus 2 ~mkIvf~G-s~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~~- 75 (312)
T PRK06988 2 KPRAVVFA-YHNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVAA- 75 (312)
T ss_pred CcEEEEEe-CcHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHHh-
Confidence 58999999 79999999999985 579999998742 1111 233343 356777753 2 2223332
Q ss_pred cccCCccEEEEcc
Q 031341 102 SQSKARAVVIDFT 114 (161)
Q Consensus 102 ~~~~~~DVVIDfT 114 (161)
..+|++|-+.
T Consensus 76 ---~~~Dliv~~~ 85 (312)
T PRK06988 76 ---AAPDFIFSFY 85 (312)
T ss_pred ---cCCCEEEEeh
Confidence 5799877654
No 375
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.47 E-value=0.12 Score=43.46 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=27.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.||.|.|++|.+|+.+++.+. ..+.++++...
T Consensus 5 k~ilItGatG~IG~~l~~~L~-~~G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLL-ELGAEVYGYSL 36 (349)
T ss_pred CEEEEECCCChhHHHHHHHHH-HCCCEEEEEeC
Confidence 589999999999999999998 45788876543
No 376
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.45 E-value=0.3 Score=45.88 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=28.2
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
...-||+|+|+ |.||+.|+..+....|++++ ++|.
T Consensus 307 ~~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~-l~d~ 341 (708)
T PRK11154 307 RPVNKVGVLGG-GLMGGGIAYVTATKAGLPVR-IKDI 341 (708)
T ss_pred CcccEEEEECC-chhhHHHHHHHHHHcCCeEE-EEeC
Confidence 34468999995 99999999988767888866 5774
No 377
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.45 E-value=0.21 Score=42.24 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=26.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
||.|+|+ |..|.++++.|. ..|+.=.-++|.
T Consensus 1 kVlVVGa-GGlG~eilknLa-l~Gvg~I~IvD~ 31 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLA-LSGFRNIHVIDM 31 (291)
T ss_pred CEEEECC-CHHHHHHHHHHH-HcCCCeEEEECC
Confidence 6999995 999999999997 678887888884
No 378
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.44 E-value=0.13 Score=47.40 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.|.|.|++|++|+.+++.+. ..|++++++..+
T Consensus 82 vVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn 113 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELL-KLGFRVRAGVRS 113 (576)
T ss_pred EEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 59999999999999999987 458998877653
No 379
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.43 E-value=0.42 Score=37.94 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
|+|.|.|++|++|+.+++.+. ..|.+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~-~~G~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFI-QQGHKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHH-HCCCEEEEEE
Confidence 579999999999999999997 4588876543
No 380
>PLN02928 oxidoreductase family protein
Probab=94.42 E-value=0.14 Score=44.05 Aligned_cols=67 Identities=13% Similarity=0.037 Sum_probs=42.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--------CCCCCeeeeCCHHHHHhcccccCCc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--------EQPLEIPVMSDLTMVLGSISQSKAR 107 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~--------~~~~~i~v~~dl~~~l~~~~~~~~~ 107 (161)
-+|+|+| +|+||+.+++.+. .=|+++.+ +|+... .......+. .... . -+.++++++. .+
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~-afG~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~L~ell~------~a 227 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLR-PFGVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDEK-G-GHEDIYEFAG------EA 227 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCCC-hhhhhhhcccccccccccccc-C-cccCHHHHHh------hC
Confidence 6999999 7999999999987 56888875 464311 100000000 0001 1 3568999996 69
Q ss_pred cEEEEcc
Q 031341 108 AVVIDFT 114 (161)
Q Consensus 108 DVVIDfT 114 (161)
|+|+-..
T Consensus 228 DiVvl~l 234 (347)
T PLN02928 228 DIVVLCC 234 (347)
T ss_pred CEEEECC
Confidence 9999554
No 381
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.39 E-value=0.083 Score=42.36 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=29.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
+.||.|+|++|.+|+.+++.+.. .+.++.++.++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEecC
Confidence 57999999999999999999875 58898887753
No 382
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.36 E-value=0.37 Score=39.01 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=27.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
+|.|.|++|.+|+.+++.|.+. +.++.++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence 4999999999999999999855 8998877763
No 383
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.31 E-value=0.43 Score=40.41 Aligned_cols=111 Identities=18% Similarity=0.100 Sum_probs=59.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~------~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV 109 (161)
+||.|+|+ |-||..+.-.|.+.. ..+.-+...+. .|-.+.+..+. ..-.+...+..+.+ ..+|+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~--~~~~~~~~~~~~~~------~~~Dl 70 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGN--FTTPVVAATDAEAL------GPADL 70 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCc--cccccccccChhhc------CCCCE
Confidence 69999995 999999999998666 55555555321 12222221110 00011112222222 37999
Q ss_pred EEEccCch---hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCee
Q 031341 110 VIDFTDAS---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (161)
Q Consensus 110 VIDfT~p~---~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (161)
+|-++-.. ...+.+...+.....|++=--|+.-++ .|.+...+..|+
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~~il 120 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKETVL 120 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcceEE
Confidence 88777443 334444444444444554344665444 566666555443
No 384
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.30 E-value=0.51 Score=37.50 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=49.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-||.|+|+ |.+|...++.+.+ .+.+++ +++++. ...+.++.. ...+.. ...+++..- .++|+||-+|
T Consensus 11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~~-~~~l~~l~~---~~~i~~~~~~~~~~~l-----~~adlViaaT 78 (202)
T PRK06718 11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPEL-TENLVKLVE---EGKIRWKQKEFEPSDI-----VDAFLVIAAT 78 (202)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCCC-CHHHHHHHh---CCCEEEEecCCChhhc-----CCceEEEEcC
Confidence 48999995 9999999998885 557766 555432 222333321 112322 122332221 3789888777
Q ss_pred CchhHHHHHHHHHHcCCcEE
Q 031341 115 DASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vV 134 (161)
.-+.....+....+.++.+-
T Consensus 79 ~d~elN~~i~~~a~~~~lvn 98 (202)
T PRK06718 79 NDPRVNEQVKEDLPENALFN 98 (202)
T ss_pred CCHHHHHHHHHHHHhCCcEE
Confidence 55555444433336676544
No 385
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.27 E-value=0.4 Score=38.75 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=44.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc--h----hhhhcCCCCCC-eeeeCCHHHHHhcccc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED--I----GMVCDMEQPLE-IPVMSDLTMVLGSISQ 103 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~e--Lvavvd~~~---~g~~--~----~~~~g~~~~~~-i~v~~dl~~~l~~~~~ 103 (161)
.||.|+|+ |.+|+.+++.+.. .++. =+.++|++. ..+. + .++.. +.+ -....++.+.+.
T Consensus 26 ~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~~~~~l~~~l~---- 96 (226)
T cd05311 26 VKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEKTGGTLKEALK---- 96 (226)
T ss_pred CEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCcccCCHHHHHh----
Confidence 58999996 9999999999974 4776 567888751 1111 0 11211 110 012136767664
Q ss_pred cCCccEEEEccCchh
Q 031341 104 SKARAVVIDFTDAST 118 (161)
Q Consensus 104 ~~~~DVVIDfT~p~~ 118 (161)
++|++|..|++..
T Consensus 97 --~~dvlIgaT~~G~ 109 (226)
T cd05311 97 --GADVFIGVSRPGV 109 (226)
T ss_pred --cCCEEEeCCCCCC
Confidence 6999998886443
No 386
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.25 E-value=0.38 Score=45.25 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=26.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.-||+|+|+ |.||+.|+..+. ..|++++ ++|.
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~ 344 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSA-SKGVPVI-MKDI 344 (715)
T ss_pred cceEEEECC-chhHHHHHHHHH-hCCCeEE-EEeC
Confidence 358999995 999999999876 6688865 6774
No 387
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.25 E-value=0.14 Score=44.06 Aligned_cols=91 Identities=12% Similarity=0.028 Sum_probs=61.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCC--eeeeCCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~~~~~~~g~~~~~~--i~v~~dl~~~l~~~~~~~~~DVVID 112 (161)
-.++|+| +|.+++..++.+...-+++=+-+++++.. .++....+. ...+ +...+|.++++. ++|+|+=
T Consensus 131 ~~laiIG-aG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~--~~~~~~v~a~~s~~~av~------~aDiIvt 201 (330)
T COG2423 131 STLAIIG-AGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLR--KRGGEAVGAADSAEEAVE------GADIVVT 201 (330)
T ss_pred cEEEEEC-CcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHH--hhcCccceeccCHHHHhh------cCCEEEE
Confidence 4689999 59999999999999888888888986532 112221111 1223 445688899885 7999994
Q ss_pred ccCchhHHHHHHHHHHcCCcEE-Ee
Q 031341 113 FTDASTVYDNVKQATAFGMRSV-VY 136 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vV-ig 136 (161)
+| |....-.....++.|.|+. +|
T Consensus 202 ~T-~s~~Pil~~~~l~~G~hI~aiG 225 (330)
T COG2423 202 AT-PSTEPVLKAEWLKPGTHINAIG 225 (330)
T ss_pred ec-CCCCCeecHhhcCCCcEEEecC
Confidence 44 4444333356678999976 44
No 388
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.25 E-value=0.56 Score=40.88 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=50.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-||.|+| .|++|..+++.+. ..+.++. ++|............+ + ....+.+... .++|++|-...
T Consensus 4 ~~i~iiG-lG~~G~slA~~l~-~~G~~V~-g~D~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~dlvV~s~g 68 (418)
T PRK00683 4 QRVVVLG-LGVTGKSIARFLA-QKGVYVI-GVDKSLEALQSCPYIH---E---RYLENAEEFP------EQVDLVVRSPG 68 (418)
T ss_pred CeEEEEE-ECHHHHHHHHHHH-HCCCEEE-EEeCCccccchhHHHh---h---hhcCCcHHHh------cCCCEEEECCC
Confidence 3799999 5999999888876 5667744 5774321110000000 0 0112333333 26898884443
Q ss_pred chhHHHHHHHHHHcCCcEEE
Q 031341 116 ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 116 p~~~~~~~~~al~~g~~vVi 135 (161)
.....+.+..|+++|+++|.
T Consensus 69 i~~~~~~l~~A~~~g~~vv~ 88 (418)
T PRK00683 69 IKKEHPWVQAAIASHIPVVT 88 (418)
T ss_pred CCCCcHHHHHHHHCCCcEEE
Confidence 34557888999999998665
No 389
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.23 E-value=0.24 Score=42.34 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=54.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeeeC---CHHHHHhcccccCCccEEEE
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~-~~~g~~~~~~i~v~~---dl~~~l~~~~~~~~~DVVID 112 (161)
+|+|+|+ |-+|-..+..+. .-+..-+-++|....-.+.. ++.+. .+.+.. +..+...++.+...+|++||
T Consensus 171 ~V~V~Ga-GpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 171 TVVVVGA-GPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVIE 244 (350)
T ss_pred EEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence 7999995 999998866554 55665566667532111111 11111 111111 11111111111236999999
Q ss_pred ccC-chhHHHHHHHHHHcCCcEEEeCCCCC
Q 031341 113 FTD-ASTVYDNVKQATAFGMRSVVYVPHIQ 141 (161)
Q Consensus 113 fT~-p~~~~~~~~~al~~g~~vVigttg~~ 141 (161)
+|- +.+...-+..+...|.-+++|+++-.
T Consensus 245 ~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 245 AVGSPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 995 44444555666666677778887543
No 390
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.28 Score=39.73 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=26.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.+|.|.|++|.+|+.+++.+. ..|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~-~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAAL-AAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHH-hCcCEEEEEeC
Confidence 469999999999999999987 45899776543
No 391
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=94.18 E-value=0.4 Score=39.56 Aligned_cols=85 Identities=22% Similarity=0.319 Sum_probs=55.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----e---CCHHHHHhcccccCCc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKAR 107 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v----~---~dl~~~l~~~~~~~~~ 107 (161)
|.+|.|+|+ =.=||.+++.|.+. +..+..-+... .|. .. ..++++ + +++.+.+. +.++
T Consensus 2 ~~~IlvlgG-T~egr~la~~L~~~-g~~v~~Svat~-~g~--~~------~~~~~v~~G~l~~~~~l~~~l~----~~~i 66 (248)
T PRK08057 2 MPRILLLGG-TSEARALARALAAA-GVDIVLSLAGR-TGG--PA------DLPGPVRVGGFGGAEGLAAYLR----EEGI 66 (248)
T ss_pred CceEEEEec-hHHHHHHHHHHHhC-CCeEEEEEccC-CCC--cc------cCCceEEECCCCCHHHHHHHHH----HCCC
Confidence 578999995 56699999988744 67665444322 222 11 122222 1 34455554 4799
Q ss_pred cEEEEccCchhHH--HHH-HHHHHcCCcEE
Q 031341 108 AVVIDFTDASTVY--DNV-KQATAFGMRSV 134 (161)
Q Consensus 108 DVVIDfT~p~~~~--~~~-~~al~~g~~vV 134 (161)
++|||+|+|-+.. +++ ..|.+.|+|.+
T Consensus 67 ~~VIDATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 67 DLVIDATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 9999999997662 444 78899999988
No 392
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.17 E-value=0.11 Score=43.66 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=24.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
||+|+|+ |.+|+.++..+....-..=+.++|+
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 8999995 9999999999875543322457775
No 393
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.16 E-value=0.73 Score=40.38 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=49.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-||.|+|. |++|..+++.+. ..+.+++ +.|....-....++-.. ..|+.++. ...+.+. .++|+|| .|
T Consensus 6 ~~~~v~G~-g~~G~~~a~~l~-~~g~~v~-~~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~-----~~~d~vv-~s 74 (445)
T PRK04308 6 KKILVAGL-GGTGISMIAYLR-KNGAEVA-AYDAELKPERVAQIGKM--FDGLVFYTGRLKDALD-----NGFDILA-LS 74 (445)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHH-----hCCCEEE-EC
Confidence 47999995 999999988775 6678866 45642211111111100 13555532 2122222 3689888 55
Q ss_pred C--chhHHHHHHHHHHcCCcEEE
Q 031341 115 D--ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 115 ~--p~~~~~~~~~al~~g~~vVi 135 (161)
+ |. ..+.+..|.++|++++.
T Consensus 75 pgi~~-~~p~~~~a~~~~i~v~~ 96 (445)
T PRK04308 75 PGISE-RQPDIEAFKQNGGRVLG 96 (445)
T ss_pred CCCCC-CCHHHHHHHHcCCcEEE
Confidence 2 32 23566777778888654
No 394
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=94.14 E-value=0.14 Score=40.07 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=25.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA 66 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~-~~~eLvav 66 (161)
++|.|.|++|++|+.+++.+.+. ++..++..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~ 32 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHAT 32 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 48999999999999999999865 45665543
No 395
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.57 Score=37.65 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=27.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.+|.|.|++|++|+.+++.+.+..+.+++.+..
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 479999999999999999998776788876543
No 396
>PRK05442 malate dehydrogenase; Provisional
Probab=94.12 E-value=0.19 Score=43.02 Aligned_cols=73 Identities=12% Similarity=0.257 Sum_probs=41.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcE-----EEEEEecCC-----CCc--chhhhh-cCCCCCCeeeeCCHHHHHhc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGME-----VAGAIDSHS-----VGE--DIGMVC-DMEQPLEIPVMSDLTMVLGS 100 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~e-----Lvavvd~~~-----~g~--~~~~~~-g~~~~~~i~v~~dl~~~l~~ 100 (161)
.|.||+|+|++|.+|..++-.+....=+. =...+|... .|. |+...+ .. ..++.++.+..+.+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~--~~~~~i~~~~y~~~-- 78 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL--LAGVVITDDPNVAF-- 78 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh--cCCcEEecChHHHh--
Confidence 46899999977999999988776433222 344777421 221 222221 11 11345554554555
Q ss_pred ccccCCccEEEEcc
Q 031341 101 ISQSKARAVVIDFT 114 (161)
Q Consensus 101 ~~~~~~~DVVIDfT 114 (161)
.++|+||...
T Consensus 79 ----~daDiVVita 88 (326)
T PRK05442 79 ----KDADVALLVG 88 (326)
T ss_pred ----CCCCEEEEeC
Confidence 3899888543
No 397
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=94.12 E-value=0.33 Score=34.87 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=46.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|||.|+| +|.=-.+++..+.+++..+=+.++-- +.|.. .+ ...+++ .+|.+++.+ .+++.++|.|| ..
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~aPG-N~G~~--~~-----~~~~~~~~~d~~~l~~-~a~~~~idlvv-vG 69 (100)
T PF02844_consen 1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVAPG-NPGTA--EL-----GKNVPIDITDPEELAD-FAKENKIDLVV-VG 69 (100)
T ss_dssp EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEEE---TTGG--GT-----SEEE-S-TT-HHHHHH-HHHHTTESEEE-ES
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEeCC-CHHHH--hh-----ceecCCCCCCHHHHHH-HHHHcCCCEEE-EC
Confidence 7999999 79555555677777777765555442 22211 00 011221 355665532 33457888777 44
Q ss_pred CchhHH-HHHHHHHHcCCcE
Q 031341 115 DASTVY-DNVKQATAFGMRS 133 (161)
Q Consensus 115 ~p~~~~-~~~~~al~~g~~v 133 (161)
+-.... -.+....++|+++
T Consensus 70 PE~pL~~Gl~D~l~~~gi~v 89 (100)
T PF02844_consen 70 PEAPLVAGLADALRAAGIPV 89 (100)
T ss_dssp SHHHHHTTHHHHHHHTT-CE
T ss_pred ChHHHHHHHHHHHHHCCCcE
Confidence 333332 3556666788885
No 398
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=94.08 E-value=0.33 Score=42.14 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=64.5
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhc----CCcEE-EE--EEecCCCC--cchhh-----------hhcCCCCCCeeeeC
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEV-AG--AIDSHSVG--EDIGM-----------VCDMEQPLEIPVMS 92 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~----~~~eL-va--vvd~~~~g--~~~~~-----------~~g~~~~~~i~v~~ 92 (161)
.+++||.|+| +|+=|+.+++.+.+. +-++. |. +.+-...| +.+.+ +-|+.-+.++...+
T Consensus 19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 3469999999 799999999987643 21111 11 11111122 12222 22333345677789
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHH----HHHHHHHHcCCcEEEeCCCCC
Q 031341 93 DLTMVLGSISQSKARAVVIDFTDASTVY----DNVKQATAFGMRSVVYVPHIQ 141 (161)
Q Consensus 93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~----~~~~~al~~g~~vVigttg~~ 141 (161)
|+.++.. ++|++| |..|+... +.+...++.+.+.|+=+-|++
T Consensus 98 dl~ea~~------dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 98 DLVEAAK------DADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred hHHHHhc------cCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 9999875 799999 88887653 566778888888887666654
No 399
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.06 E-value=0.64 Score=41.32 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=47.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-||+|+| .|+-|+..++.+. . +.+++ +.|...... ..+.... .... ......+.+. ++|.|| .|+
T Consensus 7 ~~v~v~G-~G~sG~a~~~~L~-~-g~~v~-v~D~~~~~~--~~~~~~~-~~~~-~~~~~~~~~~------~~d~vV-~SP 71 (454)
T PRK01368 7 QKIGVFG-LGKTGISVYEELQ-N-KYDVI-VYDDLKANR--DIFEELY-SKNA-IAALSDSRWQ------NLDKIV-LSP 71 (454)
T ss_pred CEEEEEe-ecHHHHHHHHHHh-C-CCEEE-EECCCCCch--HHHHhhh-cCce-eccCChhHhh------CCCEEE-ECC
Confidence 4899999 6999999999987 4 88754 677322111 1111100 0011 1111223343 689877 552
Q ss_pred --chhHHHHHHHHHHcCCcEEE
Q 031341 116 --ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 116 --p~~~~~~~~~al~~g~~vVi 135 (161)
|. ..+.+..+.++|++++.
T Consensus 72 gI~~-~~p~~~~a~~~gi~v~~ 92 (454)
T PRK01368 72 GIPL-THEIVKIAKNFNIPITS 92 (454)
T ss_pred CCCC-CCHHHHHHHHCCCceec
Confidence 33 33566777788888753
No 400
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.04 E-value=0.32 Score=41.31 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=43.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV 110 (161)
.||+|+|+ |++|..++-.+...+-..=..++|... .| .|+...........+..+.|+++ + .++|+|
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~------~~adiv 75 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T------ANSKVV 75 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h------CCCCEE
Confidence 59999996 999999999887665555466888532 12 12222221111113444478887 4 389998
Q ss_pred EEcc
Q 031341 111 IDFT 114 (161)
Q Consensus 111 IDfT 114 (161)
|.+.
T Consensus 76 vita 79 (312)
T cd05293 76 IVTA 79 (312)
T ss_pred EECC
Confidence 8643
No 401
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=94.03 E-value=0.22 Score=43.77 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGM 61 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~ 61 (161)
.++||+|+|++|++|..++-.+....=+
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~ 70 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVF 70 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccc
Confidence 4799999998899999999988754443
No 402
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.02 E-value=0.28 Score=42.08 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=53.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-+|+|+| +|.-|+.++..+. +.+++++-.........+.++ +.|..++ +++++.. .+|+|...+
T Consensus 19 K~iaIIG-YGsQG~ahalNLR-DSGlnViiGlr~g~~s~~kA~------~dGf~V~-~v~ea~k------~ADvim~L~- 82 (338)
T COG0059 19 KKVAIIG-YGSQGHAQALNLR-DSGLNVIIGLRKGSSSWKKAK------EDGFKVY-TVEEAAK------RADVVMILL- 82 (338)
T ss_pred CeEEEEe-cChHHHHHHhhhh-hcCCcEEEEecCCchhHHHHH------hcCCEee-cHHHHhh------cCCEEEEeC-
Confidence 4899999 7999999999875 889997766653221122222 3455554 7888875 799998666
Q ss_pred chhH-----HHHHHHHHHcCCcE
Q 031341 116 ASTV-----YDNVKQATAFGMRS 133 (161)
Q Consensus 116 p~~~-----~~~~~~al~~g~~v 133 (161)
|+.. ...+.-.++.|..+
T Consensus 83 PDe~q~~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 83 PDEQQKEVYEKEIAPNLKEGAAL 105 (338)
T ss_pred chhhHHHHHHHHhhhhhcCCceE
Confidence 4322 23455556666543
No 403
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.02 E-value=0.12 Score=40.29 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=50.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
-++.|+| +|+.|+.+++.+. .-+.++ -|++.++. +.+... ..|+.+. ++++++. .+|++|-.|-
T Consensus 24 k~vvV~G-YG~vG~g~A~~lr-~~Ga~V-~V~e~DPi-~alqA~-----~dGf~v~-~~~~a~~------~adi~vtaTG 87 (162)
T PF00670_consen 24 KRVVVIG-YGKVGKGIARALR-GLGARV-TVTEIDPI-RALQAA-----MDGFEVM-TLEEALR------DADIFVTATG 87 (162)
T ss_dssp SEEEEE---SHHHHHHHHHHH-HTT-EE-EEE-SSHH-HHHHHH-----HTT-EEE--HHHHTT------T-SEEEE-SS
T ss_pred CEEEEeC-CCcccHHHHHHHh-hCCCEE-EEEECChH-HHHHhh-----hcCcEec-CHHHHHh------hCCEEEECCC
Confidence 4799999 8999999999987 446664 46664321 111111 1244443 7888875 7999997775
Q ss_pred chhH--HHHHHHHHHcCCcEEEeCCC-CCHH-HHHHHHHH
Q 031341 116 ASTV--YDNVKQATAFGMRSVVYVPH-IQLE-TVSALSAF 151 (161)
Q Consensus 116 p~~~--~~~~~~al~~g~~vVigttg-~~~e-~~~~L~~~ 151 (161)
+... .++.. .++.|.- +...| ++.| +.+.|.+.
T Consensus 88 ~~~vi~~e~~~-~mkdgai--l~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 88 NKDVITGEHFR-QMKDGAI--LANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SSSSB-HHHHH-HS-TTEE--EEESSSSTTSBTHHHHHTC
T ss_pred CccccCHHHHH-HhcCCeE--EeccCcCceeEeecccccc
Confidence 5443 34444 3555544 44433 3322 34455554
No 404
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.02 E-value=0.55 Score=39.34 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=49.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEEcc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
+|.|.|+ |.+|...++.+. .-+.+-+.++++.....+...-+|.. .+.-+ .++++.... ...+|+++|++
T Consensus 172 ~VlV~G~-G~vG~~aiqlak-~~G~~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~---~g~~D~vid~~ 243 (343)
T PRK09880 172 RVFVSGV-GPIGCLIVAAVK-TLGAAEIVCADVSPRSLSLAREMGAD---KLVNPQNDDLDHYKAE---KGYFDVSFEVS 243 (343)
T ss_pred EEEEECC-CHHHHHHHHHHH-HcCCcEEEEEeCCHHHHHHHHHcCCc---EEecCCcccHHHHhcc---CCCCCEEEECC
Confidence 7999995 999999987665 56775333444322111222212211 11111 234444321 12489999998
Q ss_pred CchhHHHHHHHHHHcC-CcEEEeCC
Q 031341 115 DASTVYDNVKQATAFG-MRSVVYVP 138 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g-~~vVigtt 138 (161)
......+.+..+++.| +-+.+|.+
T Consensus 244 G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 244 GHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CCHHHHHHHHHHhhcCCEEEEEccC
Confidence 6544444454555554 54456653
No 405
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.99 E-value=0.4 Score=39.10 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=47.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (161)
+|.|+|+ |.+|...++.+. .-+.+.+.++++.....+..+-+|.. .+.-+.+..+.+.++.....+|+++|++-.
T Consensus 123 ~VlV~G~-G~vG~~~~~~ak-~~G~~~Vi~~~~~~~r~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 123 RVLVVGA-GMLGLTAAAAAA-AAGAARVVAADPSPDRRELALSFGAT---ALAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred EEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCHHHHHHHHHcCCc---EecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 7999996 999999888665 56876333445322111111112211 011112222222111112368999999854
Q ss_pred hhHHHHHHHHH-HcCCcEEEeC
Q 031341 117 STVYDNVKQAT-AFGMRSVVYV 137 (161)
Q Consensus 117 ~~~~~~~~~al-~~g~~vVigt 137 (161)
....+.+..++ ..|.-+++|.
T Consensus 198 ~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 198 TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred hHHHHHHHHHhcCCCEEEEecc
Confidence 44444444444 4445555664
No 406
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.99 E-value=0.34 Score=43.32 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=50.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVIDf 113 (161)
-||.|+| .|+.|...++.+. ..+.++.+ .|.... ....+ .+.|+.++. ...+.+. .+|+||..
T Consensus 13 ~~v~V~G-~G~sG~aa~~~L~-~~G~~v~~-~D~~~~--~~~~l----~~~g~~~~~~~~~~~~l~------~~D~VV~S 77 (488)
T PRK03369 13 APVLVAG-AGVTGRAVLAALT-RFGARPTV-CDDDPD--ALRPH----AERGVATVSTSDAVQQIA------DYALVVTS 77 (488)
T ss_pred CeEEEEc-CCHHHHHHHHHHH-HCCCEEEE-EcCCHH--HHHHH----HhCCCEEEcCcchHhHhh------cCCEEEEC
Confidence 4799999 5999999998665 77888765 774321 11111 133554432 2333443 68988854
Q ss_pred c-CchhHHHHHHHHHHcCCcEE
Q 031341 114 T-DASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 114 T-~p~~~~~~~~~al~~g~~vV 134 (161)
. .|.. .+.+.+|.++|++++
T Consensus 78 pGi~~~-~p~~~~a~~~gi~v~ 98 (488)
T PRK03369 78 PGFRPT-APVLAAAAAAGVPIW 98 (488)
T ss_pred CCCCCC-CHHHHHHHHCCCcEe
Confidence 4 2433 355666677777654
No 407
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.99 E-value=0.094 Score=41.72 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=30.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
++|.|.|+||..|+.+++.|... +.++++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~ 34 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNP 34 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeCH
Confidence 47999999999999999999866 99999888853
No 408
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=93.97 E-value=0.75 Score=41.20 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=53.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
-|+.|+| +|..|+.+++.+..++ +++++|.+|.+..+ .. -.|+|+..+.+++.. ..++...|++|-.
T Consensus 147 rrvLIIG-aG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~---~~------i~gvPVlg~~d~l~~-~~~~~~v~vIIAi 215 (476)
T PRK15204 147 KKTIILG-SGQNARGAYSALQSEEMMGFDVIAFFDTDASD---AE------INMLPVIKDTEIIWD-LNRTGDVHYILAY 215 (476)
T ss_pred CeEEEEE-CCHHHHHHHHHHHhCccCCcEEEEEEcCCccc---cc------cCCCcccCCHHHHHH-HHHhCCCcEEEEe
Confidence 5799999 5999999999998655 78999999954321 11 246777766553311 0012356664422
Q ss_pred cCch--hHHHHHHHHHHcCCc
Q 031341 114 TDAS--TVYDNVKQATAFGMR 132 (161)
Q Consensus 114 T~p~--~~~~~~~~al~~g~~ 132 (161)
..++ ...+.+..+.+.|+.
T Consensus 216 p~~~~~~r~~il~~l~~~gv~ 236 (476)
T PRK15204 216 EYTELEKTHFWLRELSKHHCR 236 (476)
T ss_pred CcCcHHHHHHHHHHHhhcCCe
Confidence 2122 223566777777874
No 409
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.95 E-value=0.078 Score=41.69 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=26.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFA-AEGARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence 479999999999999999997 55888665544
No 410
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.71 Score=37.08 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=25.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav 66 (161)
.++.|.|++|.+|+.+++.+. ..+.+++.+
T Consensus 6 ~~ilVtGasggiG~~la~~l~-~~G~~v~~~ 35 (273)
T PRK07825 6 KVVAITGGARGIGLATARALA-ALGARVAIG 35 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHH-HCCCEEEEE
Confidence 479999999999999999997 457886544
No 411
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.37 Score=38.37 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=25.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
-++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~-~~G~~V~~~~ 32 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFA-AEGWRVGAYD 32 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHH-HCCCeEEEEe
Confidence 469999999999999999997 4578876543
No 412
>PLN02686 cinnamoyl-CoA reductase
Probab=93.91 E-value=0.099 Score=44.76 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=30.8
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
...+.+|.|.|++|.+|+.+++.+. ..|.++++++++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~-~~G~~V~~~~r~ 86 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLL-RHGYSVRIAVDT 86 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 3445789999999999999999997 568998877663
No 413
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.68 Score=36.32 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=26.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
+|-++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~-~~G~~V~~~~ 37 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFA-KAGWDLALVA 37 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEe
Confidence 35579999999999999999997 4677766543
No 414
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.86 E-value=0.16 Score=45.79 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=43.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-----~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DV 109 (161)
--+|+|+| +|..|+..+..+. ..+++++...... ..+.+... +.|.++ .++++++. .+|+
T Consensus 36 gKtIaIIG-yGSqG~AqAlNLr-dSGvnVvvglr~~~id~~~~s~~kA~------~dGF~v-~~~~Ea~~------~ADv 100 (487)
T PRK05225 36 GKKIVIVG-CGAQGLNQGLNMR-DSGLDISYALRKEAIAEKRASWRKAT------ENGFKV-GTYEELIP------QADL 100 (487)
T ss_pred CCEEEEEc-cCHHHHHHhCCCc-cccceeEEeccccccccccchHHHHH------hcCCcc-CCHHHHHH------hCCE
Confidence 37999999 6999998877654 6788877444321 11222211 124444 57888885 7999
Q ss_pred EEEccCchh
Q 031341 110 VIDFTDAST 118 (161)
Q Consensus 110 VIDfT~p~~ 118 (161)
|+-.+ |+.
T Consensus 101 VviLl-PDt 108 (487)
T PRK05225 101 VINLT-PDK 108 (487)
T ss_pred EEEcC-ChH
Confidence 99444 544
No 415
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.84 E-value=0.4 Score=40.13 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~-~~eLvav 66 (161)
.+|.|.|++|.+|+.+++.+.+.. ..+++.+
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~ 36 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIY 36 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999999999999998763 4676644
No 416
>PRK07578 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.21 Score=38.26 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=24.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
+++.|.|++|.+|+.+++.+.+. .+++.+.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~ 30 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAG 30 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence 37999999999999999999865 6666544
No 417
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.81 E-value=0.58 Score=41.12 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=49.2
Q ss_pred eEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCH-HHHHhcccccCCccEEEEcc
Q 031341 37 KVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 37 kV~ViGa~G~mGr~-i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl-~~~l~~~~~~~~~DVVIDfT 114 (161)
++-++|. |+.|.. +++.+. ..|.++. +.|..... ....+ .+.++.++... .+.+ .++|+|| .|
T Consensus 1 ~~~~iGi-ggsGm~~la~~L~-~~G~~v~-~~D~~~~~-~~~~l----~~~gi~~~~g~~~~~~------~~~d~vV-~s 65 (448)
T TIGR01082 1 KIHFVGI-GGIGMSGIAEILL-NRGYQVS-GSDIAENA-TTKRL----EALGIPIYIGHSAENL------DDADVVV-VS 65 (448)
T ss_pred CEEEEEE-CHHHHHHHHHHHH-HCCCeEE-EECCCcch-HHHHH----HHCcCEEeCCCCHHHC------CCCCEEE-EC
Confidence 4788995 999998 777665 7788865 67743211 11122 13466665322 2333 2689887 55
Q ss_pred C--chhHHHHHHHHHHcCCcEEE
Q 031341 115 D--ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 115 ~--p~~~~~~~~~al~~g~~vVi 135 (161)
+ |. ..+.+..|.++|++++.
T Consensus 66 pgi~~-~~p~~~~a~~~~i~v~~ 87 (448)
T TIGR01082 66 AAIKD-DNPEIVEAKERGIPVIR 87 (448)
T ss_pred CCCCC-CCHHHHHHHHcCCceEe
Confidence 2 33 23556667778887653
No 418
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.81 E-value=0.62 Score=41.00 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=24.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.||.|+| .|+.|...++.+. ..|.+ |.++|.
T Consensus 10 ~~i~viG-~G~~G~~~a~~l~-~~G~~-v~~~D~ 40 (460)
T PRK01390 10 KTVAVFG-LGGSGLATARALV-AGGAE-VIAWDD 40 (460)
T ss_pred CEEEEEe-ecHhHHHHHHHHH-HCCCE-EEEECC
Confidence 4899999 5999999887775 66787 456774
No 419
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.80 E-value=0.2 Score=44.18 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=49.7
Q ss_pred eeEEEEcCCCHHHHHHHH--HHH---hcCCcEEEEEEecCCC-----CcchhhhhcC-CCCCCeeeeCCHHHHHhccccc
Q 031341 36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHSV-----GEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQS 104 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~--~l~---~~~~~eLvavvd~~~~-----g~~~~~~~g~-~~~~~i~v~~dl~~~l~~~~~~ 104 (161)
+||+|+|+ |.||...+- .+. ..++.+++ ++|++.. ..+....... .....+..++|+++++.
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~----- 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD----- 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc-----
Confidence 58999995 999997543 344 35556644 6775321 1111111111 01234566889999885
Q ss_pred CCccEEEEccCchhHH---HHHHHHHHcCCc
Q 031341 105 KARAVVIDFTDASTVY---DNVKQATAFGMR 132 (161)
Q Consensus 105 ~~~DVVIDfT~p~~~~---~~~~~al~~g~~ 132 (161)
++|+||....+.... ..-+..+++|+-
T Consensus 74 -~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~ 103 (423)
T cd05297 74 -GADFVINTIQVGGHEYTETDFEIPEKYGYY 103 (423)
T ss_pred -CCCEEEEeeEecCccchhhhhhhHHHcCee
Confidence 899999554332221 222355666654
No 420
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.76 E-value=0.62 Score=40.81 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=47.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Cc-chhhhhcCCCCCCeeeeCC--HH-----HHHhcccccCCc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GE-DIGMVCDMEQPLEIPVMSD--LT-----MVLGSISQSKAR 107 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~-~~~~~~g~~~~~~i~v~~d--l~-----~~l~~~~~~~~~ 107 (161)
||.|+| .|+.|...++.+. ..|.++. +.|.... .. +..+.+ .+.|+.++.. .+ ..+ .++
T Consensus 2 ~v~viG-~G~sG~s~a~~l~-~~G~~V~-~~D~~~~~~~~~~~~~l---~~~gi~~~~g~~~~~~~~~~~~------~~~ 69 (459)
T PRK02705 2 IAHVIG-LGRSGIAAARLLK-AQGWEVV-VSDRNDSPELLERQQEL---EQEGITVKLGKPLELESFQPWL------DQP 69 (459)
T ss_pred eEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCCchhhHHHHHHH---HHcCCEEEECCccchhhhhHHh------hcC
Confidence 799999 5999999877765 6688754 6774321 11 111111 1335554321 11 234 268
Q ss_pred cEEEEccC--chhHHHHHHHHHHcCCcEE
Q 031341 108 AVVIDFTD--ASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 108 DVVIDfT~--p~~~~~~~~~al~~g~~vV 134 (161)
|.|| .|+ |.. .+.+.+|.+.|++++
T Consensus 70 d~vv-~s~gi~~~-~~~~~~a~~~~i~v~ 96 (459)
T PRK02705 70 DLVV-VSPGIPWD-HPTLVELRERGIEVI 96 (459)
T ss_pred CEEE-ECCCCCCC-CHHHHHHHHcCCcEE
Confidence 9877 442 222 345666667777765
No 421
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.74 E-value=1.8 Score=35.31 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=40.7
Q ss_pred EEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341 38 VIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~--~~eLvavvd~~~---~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV 110 (161)
|+|+|+.|.||..++..+...+ ...=+..+|... .+ .++.+.........+..++|+++.+. ++|+|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~------~aDiV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK------DADVV 74 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC------CCCEE
Confidence 6899977999999999887555 323355778532 11 12222221100124555677777764 78887
Q ss_pred EE
Q 031341 111 ID 112 (161)
Q Consensus 111 ID 112 (161)
|.
T Consensus 75 v~ 76 (263)
T cd00650 75 II 76 (263)
T ss_pred EE
Confidence 75
No 422
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.71 E-value=0.36 Score=41.17 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=41.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcE-----EEEEEecCC-----CC--cchhhhhcCCCCCCeeeeCCHHHHHhcccc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGME-----VAGAIDSHS-----VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQ 103 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~e-----Lvavvd~~~-----~g--~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~ 103 (161)
+||+|+||+|++|+.++..+...+-+. -+..+|... .| .|+.+.+... ..+..+..+..+.+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~-~~~~~i~~~~~~~~~---- 75 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL-LKGVVITTDPEEAFK---- 75 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccc-cCCcEEecChHHHhC----
Confidence 589999988999999999887544332 144667432 11 1222211000 112344455556664
Q ss_pred cCCccEEEEcc
Q 031341 104 SKARAVVIDFT 114 (161)
Q Consensus 104 ~~~~DVVIDfT 114 (161)
++|+||-..
T Consensus 76 --~aDiVVitA 84 (323)
T cd00704 76 --DVDVAILVG 84 (323)
T ss_pred --CCCEEEEeC
Confidence 899888544
No 423
>PRK06153 hypothetical protein; Provisional
Probab=93.71 E-value=0.34 Score=42.68 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=26.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.||+|+|+ |+.|+.++..|.+..--+|+ ++|.
T Consensus 177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD~ 208 (393)
T PRK06153 177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFDG 208 (393)
T ss_pred CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EECC
Confidence 59999995 99999999999977655554 6773
No 424
>COG2403 Predicted GTPase [General function prediction only]
Probab=93.69 E-value=0.36 Score=42.59 Aligned_cols=96 Identities=21% Similarity=0.282 Sum_probs=64.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchh--hhhcCCCCCCeeeeCC-----HHHHHhccccc
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIG--MVCDMEQPLEIPVMSD-----LTMVLGSISQS 104 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g--~~~~--~~~g~~~~~~i~v~~d-----l~~~l~~~~~~ 104 (161)
.+.||.+.|+.|+==-..=..+...|.++++++..-...| .+.. ++.|...+.|+|++.+ +++++.+
T Consensus 5 a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire---- 80 (449)
T COG2403 5 ARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIRE---- 80 (449)
T ss_pred CceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHHH----
Confidence 3578999998665433333445578889998887733221 1111 2344334678888643 6666764
Q ss_pred CCcc-EEEEcc--CchhHHHHHHHHHHcCCcE
Q 031341 105 KARA-VVIDFT--DASTVYDNVKQATAFGMRS 133 (161)
Q Consensus 105 ~~~D-VVIDfT--~p~~~~~~~~~al~~g~~v 133 (161)
.+.| +|+|.| +|+.....+...+..|...
T Consensus 81 ~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f 112 (449)
T COG2403 81 KDVDIVVLAYSDVSYEHVFRIASRVLSAGADF 112 (449)
T ss_pred cCCCeEEEEcccCCHHHHHHHHHHHHhCCcee
Confidence 7899 999999 6777888888888887654
No 425
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=93.65 E-value=0.6 Score=43.97 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=27.1
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 33 ~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
...-||+|+|+ |-||+.|+..+. ..|++++ ++|.
T Consensus 311 ~~i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~ 344 (714)
T TIGR02437 311 KDVKQAAVLGA-GIMGGGIAYQSA-SKGTPIV-MKDI 344 (714)
T ss_pred cccceEEEECC-chHHHHHHHHHH-hCCCeEE-EEeC
Confidence 34468999995 999999999887 5689866 6774
No 426
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=93.64 E-value=0.22 Score=43.99 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=74.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eee---CCHH-HHHhcccccCCccEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVM---SDLT-MVLGSISQSKARAVV 110 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i-~v~---~dl~-~~l~~~~~~~~~DVV 110 (161)
-+|.+.| +|++.+-.+..+.+..+.++.-+.+....++ .+.. ...+ +|. .+.+ .+...+ .+-|++
T Consensus 3 ~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~---~~~~---~~~~~av~ldv~~~~~~L~~~v---~~~D~v 72 (445)
T KOG0172|consen 3 KGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAE---ALVK---GINIKAVSLDVADEELALRKEV---KPLDLV 72 (445)
T ss_pred cceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHH---HHhc---CCCccceEEEccchHHHHHhhh---ccccee
Confidence 4799999 6999999999999999999986666322222 2211 1111 111 2222 121111 478898
Q ss_pred EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeeec
Q 031341 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (161)
+-.++-..+.-.++.|+.++.++|. +.+...+.++|.+.+..+++...
T Consensus 73 iSLlP~t~h~lVaK~~i~~~~~~vt--sSyv~pe~~~L~~~~v~AG~ti~ 120 (445)
T KOG0172|consen 73 ISLLPYTFHPLVAKGCIITKEDSVT--SSYVDPELEELEKAAVPAGSTIM 120 (445)
T ss_pred eeeccchhhHHHHHHHHHhhccccc--ccccCHHHHhhhhhccCCCceEe
Confidence 8555445555677899999999764 33666778999999998877654
No 427
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.62 E-value=0.11 Score=45.82 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=27.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvav 66 (161)
+.||.|.|++|.+|+.+++.+.+ .|.+++++
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~-~G~~V~~~ 77 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSK-RGYEVAIV 77 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCeEEEE
Confidence 47899999999999999999984 57887765
No 428
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.61 E-value=1.7 Score=36.93 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=27.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
..||+|+|+ |++|..++-.+...+-..=..++|.
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 369999997 9999999998886655534558885
No 429
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.60 E-value=0.33 Score=40.23 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=50.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (161)
+|.|+|+ |.+|...++.+. .-+.+.+.++|... .+. +.++ .. .+++ .++... ..+|++||++-.
T Consensus 147 ~vlV~G~-G~vG~~a~q~ak-~~G~~~v~~~~~~~--~rl-~~a~---~~--~~i~-~~~~~~-----~g~Dvvid~~G~ 210 (308)
T TIGR01202 147 PDLIVGH-GTLGRLLARLTK-AAGGSPPAVWETNP--RRR-DGAT---GY--EVLD-PEKDPR-----RDYRAIYDASGD 210 (308)
T ss_pred cEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCH--HHH-Hhhh---hc--cccC-hhhccC-----CCCCEEEECCCC
Confidence 6999995 999999887655 66888776776432 111 1111 11 1122 121111 468999999865
Q ss_pred hhH-HHHHHHHHHcCCcEEEeCC
Q 031341 117 STV-YDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 117 ~~~-~~~~~~al~~g~~vVigtt 138 (161)
... ...+......|.-+++|..
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEeec
Confidence 444 4445555556666667753
No 430
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.60 E-value=0.45 Score=40.46 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=26.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
|||+|+|++|++|..++-.+...+-..=+..+|..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 69999997799999999888755544435577743
No 431
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.60 E-value=0.34 Score=44.60 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=55.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCH--HHHHhcccccCCccEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVI 111 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl--~~~l~~~~~~~~~DVVI 111 (161)
.-+|.|+| +|++|+.+++.+. ..+.+++ ++|++. ..+.... +.|.++ +.|. .+.+.+ +.-.++|++|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~~L~~-agi~~A~~vv 469 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLM-ANKMRIT-VLERDI--SAVNLMR----KYGYKVYYGDATQLELLRA-AGAEKAEAIV 469 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hCCCeEEEeeCCCHHHHHh-cCCccCCEEE
Confidence 36899999 6999999999886 5677765 666432 1222221 234443 3221 222221 0014678877
Q ss_pred EccCc-hhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHH
Q 031341 112 DFTDA-STVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAF 151 (161)
Q Consensus 112 DfT~p-~~~~~~~~~al~~g--~~vVigttg~~~e~~~~L~~~ 151 (161)
-.+.- +.....+..+.+.. .+++. .+ -++++.++|.++
T Consensus 470 ~~~~d~~~n~~i~~~~r~~~p~~~Iia-Ra-~~~~~~~~L~~~ 510 (601)
T PRK03659 470 ITCNEPEDTMKIVELCQQHFPHLHILA-RA-RGRVEAHELLQA 510 (601)
T ss_pred EEeCCHHHHHHHHHHHHHHCCCCeEEE-Ee-CCHHHHHHHHhC
Confidence 44432 22334444444443 34433 22 455666666654
No 432
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.16 Score=40.76 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=26.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-+|.|.|++|.+|+.+++.+. ..+.+++++..
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~-~~g~~V~~~~r 36 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLA-RAGYRVFGTSR 36 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHH-HCCCEEEEEeC
Confidence 369999999999999999987 45888776554
No 433
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=93.53 E-value=0.85 Score=35.81 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=26.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.+.|.|++|.+|+.+++.+.+ .+.+++...+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~ 35 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCG 35 (246)
T ss_pred EEEEECCCChHHHHHHHHHHH-cCCEEEEEcC
Confidence 479999999999999999974 5788876554
No 434
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=93.52 E-value=0.41 Score=39.51 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=52.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------eCCHHHHHhcccccCCcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA 108 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-------~~dl~~~l~~~~~~~~~D 108 (161)
|||.|.|+ =.=|+.+++.|.+... -++.++-. .|....... ....++ .+++.+.+. +.+++
T Consensus 1 m~ILvlgG-TtE~r~la~~L~~~g~-v~~sv~t~--~g~~~~~~~----~~~~~v~~G~lg~~~~l~~~l~----~~~i~ 68 (249)
T PF02571_consen 1 MKILVLGG-TTEGRKLAERLAEAGY-VIVSVATS--YGGELLKPE----LPGLEVRVGRLGDEEGLAEFLR----ENGID 68 (249)
T ss_pred CEEEEEec-hHHHHHHHHHHHhcCC-EEEEEEhh--hhHhhhccc----cCCceEEECCCCCHHHHHHHHH----hCCCc
Confidence 68999995 5668999998875554 22223321 122111000 011111 133444554 47999
Q ss_pred EEEEccCchhH--HHHH-HHHHHcCCcEE
Q 031341 109 VVIDFTDASTV--YDNV-KQATAFGMRSV 134 (161)
Q Consensus 109 VVIDfT~p~~~--~~~~-~~al~~g~~vV 134 (161)
+|||+|||-+. .+++ ..|.+.|+|.+
T Consensus 69 ~vIDATHPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 69 AVIDATHPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred EEEECCCchHHHHHHHHHHHHhhcCcceE
Confidence 99999999766 2444 78899999988
No 435
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.51 E-value=0.17 Score=42.21 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
-||.|+|+ |.+|+.++..+.. .++.=+.+++++
T Consensus 128 k~vlIlGa-GGaaraia~aL~~-~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGA-GGAGAAVAHALLT-LGVERLTIFDVD 160 (284)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 58999995 9999999999874 566446688865
No 436
>PRK06953 short chain dehydrogenase; Provisional
Probab=93.51 E-value=0.58 Score=36.47 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=26.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
-++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~-~~G~~v~~~~ 32 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYR-ADGWRVIATA 32 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHH-hCCCEEEEEE
Confidence 478999999999999999987 5689977654
No 437
>PRK08017 oxidoreductase; Provisional
Probab=93.48 E-value=1.9 Score=34.00 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=25.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
+|.|.|++|.+|+.+++.+. ..|.+++.+..
T Consensus 4 ~vlVtGasg~IG~~la~~l~-~~g~~v~~~~r 34 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELK-RRGYRVLAACR 34 (256)
T ss_pred EEEEECCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence 59999999999999999997 45788765543
No 438
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.47 E-value=0.33 Score=40.43 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=50.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC---CHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~---dl~~~l~~~~~~~~~DVVID 112 (161)
=+|.|.|++|.+|..+++.+. ..|.++++..++......+.+.+|.. .+.-++ ++.+.+.+.. ...+|+++|
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~-~~gvd~v~d 227 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDEKVDLLKNKLGFD---DAFNYKEEPDLDAALKRYF-PNGIDIYFD 227 (338)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHhcCCc---eeEEcCCcccHHHHHHHhC-CCCcEEEEE
Confidence 379999999999999887654 67888776655321101111112221 111111 3433332211 136899999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeC
Q 031341 113 FTDASTVYDNVKQATAFGMRSVVYV 137 (161)
Q Consensus 113 fT~p~~~~~~~~~al~~g~~vVigt 137 (161)
++......+.+......|.-+.+|.
T Consensus 228 ~~g~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 228 NVGGKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred CCCHHHHHHHHHHhccCcEEEEecc
Confidence 8765433333333334444444553
No 439
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.47 E-value=1.2 Score=36.52 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=25.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
-++.|.|++|.+|+.+++.+. ..|.+++.+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~ 40 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLH-ARGAKLALVD 40 (296)
T ss_pred CEEEEECCCchHHHHHHHHHH-HCCCEEEEEe
Confidence 469999999999999999987 5678866443
No 440
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.47 E-value=0.19 Score=42.33 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=52.3
Q ss_pred eEE-EEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCeeee---CCHHHHHhcccccCCccEEE
Q 031341 37 KVI-INGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 37 kV~-ViGa~G~mGr~i~~~l~~~~~~eLvav-vd~~~~g~~~~~~~g~~~~~~i~v~---~dl~~~l~~~~~~~~~DVVI 111 (161)
|++ |.|++|-.|++.+..|..+|.++|.-. .+....|++...-..+++..-.|-. -+++++-.. .=.++|+++
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~--~F~ecDIvf 82 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTAD--SFNECDIVF 82 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChh--hcccccEEE
Confidence 455 999999999999999999999998755 3323356554332222210000100 012221100 003577766
Q ss_pred EccCc-hhHHHHHHHHHHcCCcEEE
Q 031341 112 DFTDA-STVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 112 DfT~p-~~~~~~~~~al~~g~~vVi 135 (161)
++.- +-.-+.-+.+.++|.-+|.
T Consensus 83 -sgldad~ageiek~f~eag~iiVs 106 (361)
T KOG4777|consen 83 -SGLDADIAGEIEKLFAEAGTIIVS 106 (361)
T ss_pred -ecCCchhhhhhhHHHHhcCeEEEe
Confidence 4432 3333555667777776664
No 441
>PRK07023 short chain dehydrogenase; Provisional
Probab=93.44 E-value=0.14 Score=40.40 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=28.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
|+++.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~~r 33 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGVAR 33 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHh-CCCEEEEEec
Confidence 57899999999999999999974 6889876543
No 442
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=93.41 E-value=0.28 Score=42.11 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=47.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccCc
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~p 116 (161)
-|.|.+|+|-.|+...+ |.+..++++||++..... ..+ +.+. -.+|++||.-.+
T Consensus 153 tvvVSaAaGaVGsvvgQ-iAKlkG~rVVGiaGg~eK----~~~--------------l~~~-------lGfD~~idyk~~ 206 (340)
T COG2130 153 TVVVSAAAGAVGSVVGQ-IAKLKGCRVVGIAGGAEK----CDF--------------LTEE-------LGFDAGIDYKAE 206 (340)
T ss_pred EEEEEecccccchHHHH-HHHhhCCeEEEecCCHHH----HHH--------------HHHh-------cCCceeeecCcc
Confidence 48899999999997665 566999999998874310 011 1111 256666666544
Q ss_pred hhHHHHHHHHHHcCCcEEEeCCCC
Q 031341 117 STVYDNVKQATAFGMRSVVYVPHI 140 (161)
Q Consensus 117 ~~~~~~~~~al~~g~~vVigttg~ 140 (161)
...+.+..+.-.|+.+..+..|-
T Consensus 207 -d~~~~L~~a~P~GIDvyfeNVGg 229 (340)
T COG2130 207 -DFAQALKEACPKGIDVYFENVGG 229 (340)
T ss_pred -cHHHHHHHHCCCCeEEEEEcCCc
Confidence 44455555555666666666543
No 443
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.39 E-value=0.44 Score=45.06 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 32 ~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
+...-||+|+|+ |.||+.|+..+. ..|++++ ++|.
T Consensus 332 ~~~i~~v~ViGa-G~MG~gIA~~~a-~~G~~V~-l~d~ 366 (737)
T TIGR02441 332 QRPVKTLAVLGA-GLMGAGIAQVSV-DKGLKTV-LKDA 366 (737)
T ss_pred CCcccEEEEECC-CHhHHHHHHHHH-hCCCcEE-EecC
Confidence 334468999996 999999999887 5589876 6774
No 444
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=93.36 E-value=0.24 Score=41.83 Aligned_cols=70 Identities=17% Similarity=0.350 Sum_probs=46.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CC--c-----chhhhhcCCCCCCeeeeC--C-----HHHHHh
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG--E-----DIGMVCDMEQPLEIPVMS--D-----LTMVLG 99 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~--~g--~-----~~~~~~g~~~~~~i~v~~--d-----l~~~l~ 99 (161)
|||+++| ++.++...++.|.+. ++++++|+-... .+ . ++.+++ .+.++|++. + +.+.+.
T Consensus 1 mkIvf~G-~~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a---~~~~Ip~~~~~~~~~~~~~~~l~ 75 (309)
T PRK00005 1 MRIVFMG-TPEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLA---LEHGIPVLQPEKLRDPEFLAELA 75 (309)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHH---HHcCCCEECcCCCCCHHHHHHHH
Confidence 6999999 799999999999854 899999996321 11 1 234444 356777753 2 122333
Q ss_pred cccccCCccEEEEcc
Q 031341 100 SISQSKARAVVIDFT 114 (161)
Q Consensus 100 ~~~~~~~~DVVIDfT 114 (161)
+ .++|++|-++
T Consensus 76 ~----~~~Dliv~~~ 86 (309)
T PRK00005 76 A----LNADVIVVVA 86 (309)
T ss_pred h----cCcCEEEEeh
Confidence 2 5899877554
No 445
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=93.36 E-value=0.65 Score=45.50 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=63.8
Q ss_pred ccceeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEecC----------------CCCcc
Q 031341 20 KAKRFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSH----------------SVGED 75 (161)
Q Consensus 20 ~~~~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~-----eLvavvd~~----------------~~g~~ 75 (161)
+-.|-|..|....|.+ .||.|+|+ |..|.++++.+. ..|+ --.-++|.+ ..|+.
T Consensus 401 RYdrqi~l~G~~~Q~kL~~~kVlvvGa-GGlG~e~lknLa-l~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~ 478 (1008)
T TIGR01408 401 RYDAQIAVFGDTFQQKLQNLNIFLVGC-GAIGCEMLKNFA-LMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKP 478 (1008)
T ss_pred hhHHHHHHcCHHHHHHHhhCcEEEECC-ChHHHHHHHHHH-HhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcH
Confidence 3345566677666654 69999995 999999999987 6666 334467732 11222
Q ss_pred hhhhh-----cCCCCCCeeee-CCH---------HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031341 76 IGMVC-----DMEQPLEIPVM-SDL---------TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY 136 (161)
Q Consensus 76 ~~~~~-----g~~~~~~i~v~-~dl---------~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g~~vVig 136 (161)
-.+.+ .+.....+..+ ..+ ++.+ ...|+||++...-.. .-.-..|..+++|+|-+
T Consensus 479 Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~------~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~ 549 (1008)
T TIGR01408 479 KSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFY------EKLDVVINALDNVEARRYVDSRCLAFLKPLLES 549 (1008)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHh------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 11111 11111122111 111 1223 278999998755444 44448999999999954
No 446
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=93.34 E-value=0.99 Score=40.10 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=32.9
Q ss_pred EeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 26 SCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 26 ~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
..|...+|.. -+|.|+|+ |..|.++++.|. .+|+.=.-++|.
T Consensus 8 rLwG~~gQ~~L~~s~VlliG~-gglGsEilKNLv-L~GIg~~tIvD~ 52 (425)
T cd01493 8 RLWGEHGQAALESAHVCLLNA-TATGTEILKNLV-LPGIGSFTIVDG 52 (425)
T ss_pred HHhHHHHHHHHhhCeEEEEcC-cHHHHHHHHHHH-HcCCCeEEEECC
Confidence 3355555543 59999995 999999999997 889977778884
No 447
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=93.30 E-value=1.2 Score=36.19 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc-CchhHHH
Q 031341 44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD 121 (161)
Q Consensus 44 ~G~mGr~i~~~l~~~~~~e-Lvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~ 121 (161)
.|.-|.+++..+.+.++++ .+.+++-+. ...++ .++.++.+..+ .+.|++|..+ +|+...+
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~i---~~~Dl~I~y~lHPDl~~~ 67 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPKI---PEADLLIAYGLHPDLTYE 67 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence 5899999999999888887 344444221 11111 24455554432 5899999877 8999999
Q ss_pred HHHHHHHcCCcEEEeCCCCCH--HHHHHHHHHhhhcC
Q 031341 122 NVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKAS 156 (161)
Q Consensus 122 ~~~~al~~g~~vVigttg~~~--e~~~~L~~~A~~~~ 156 (161)
.++.+.++|+..|+.-. ++. ...+.|++.+++.+
T Consensus 68 l~~~~~e~g~kavIvp~-~~~~~g~~~~lk~~~e~~g 103 (217)
T PF02593_consen 68 LPEIAKEAGVKAVIVPS-ESPKPGLRRQLKKQLEEFG 103 (217)
T ss_pred HHHHHHHcCCCEEEEec-CCCccchHHHHHHHHHhcC
Confidence 99999999988886433 222 33445666666644
No 448
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=93.26 E-value=1.1 Score=38.83 Aligned_cols=90 Identities=12% Similarity=0.175 Sum_probs=48.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-eee-eCCHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPV-MSDLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~-i~v-~~dl~~~l~~~~~~~~~DVVIDf 113 (161)
|||+|+| .|.-+..+++.+.+++ ..+..+.++...|. .... +.. +.+ +.|.+.+++ +++..++|+++-.
T Consensus 1 ~kiliiG-~G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~d~~~l~~-~~~~~~id~vi~~ 71 (423)
T TIGR00877 1 MKVLVIG-NGGREHALAWKLAQSP-LVKYVYVAPGNAGT--ARLA----KNKNVAISITDIEALVE-FAKKKKIDLAVIG 71 (423)
T ss_pred CEEEEEC-CChHHHHHHHHHHhCC-CccEEEEECCCHHH--hhhc----ccccccCCCCCHHHHHH-HHHHhCCCEEEEC
Confidence 6999999 5888999999998753 33333334322221 1000 111 111 256665432 2334678887733
Q ss_pred cCchhHHHHHHHHHHcCCcEE
Q 031341 114 TDASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 114 T~p~~~~~~~~~al~~g~~vV 134 (161)
..-......+..+.+.|++++
T Consensus 72 ~e~~l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 72 PEAPLVLGLVDALEEAGIPVF 92 (423)
T ss_pred CchHHHHHHHHHHHHCCCeEE
Confidence 221112345556667888753
No 449
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.23 E-value=2.6 Score=36.10 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=25.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
+||+|+|+ |++|+.++-.+....=..=..++|..
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcc
Confidence 58999997 99999999988544333134578853
No 450
>PRK06196 oxidoreductase; Provisional
Probab=93.23 E-value=0.59 Score=38.75 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=26.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-+|.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 27 k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R 58 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALA-QAGAHVIVPAR 58 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeC
Confidence 479999999999999999987 46888876544
No 451
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.20 E-value=0.77 Score=42.51 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=55.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---CCHHHHHhcccccCCccEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~---~dl~~~l~~~~~~~~~DVV 110 (161)
.-+|.|+| +|++|+.+++.+. ..+.+++ ++|.+. ..+.... +.|.++ + ++.+ ++.+ +.-.++|++
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~-agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLL-SSGVKMT-VLDHDP--DHIETLR----KFGMKVFYGDATRMD-LLES-AGAAKAEVL 468 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence 36899999 6999999999886 5577765 557432 1222211 234444 3 2332 2221 001367877
Q ss_pred EEccC-chhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHH
Q 031341 111 IDFTD-ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAF 151 (161)
Q Consensus 111 IDfT~-p~~~~~~~~~al~~g--~~vVigttg~~~e~~~~L~~~ 151 (161)
|-.+. ++.....+..+.++. .+++.=+ -+.+..++|.++
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~ 510 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIARA--RDVDHYIRLRQA 510 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC
Confidence 74553 333344445555443 3444322 445666666655
No 452
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=93.16 E-value=0.61 Score=45.68 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=64.7
Q ss_pred eeEEeeCCCCCCC---eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchh-----h
Q 031341 23 RFISCSTNPPQSN---IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIG-----M 78 (161)
Q Consensus 23 ~~~~~~~~~~~~~---ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~----------------~g~~~~-----~ 78 (161)
|-|+.|-..+|.+ -||.|+|+ |+.|.++++.|. ..|+.=+.++|... .|++-. .
T Consensus 9 RQi~l~G~eaq~kL~~s~VLIiG~-gGLG~EiaKnL~-laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~ 86 (1008)
T TIGR01408 9 RQLYVLGDEAMQKMAKSNVLISGM-GGLGLEIAKNLV-LAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKK 86 (1008)
T ss_pred hHHHhcCHHHHHHHhhCcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHH
Confidence 4455666666654 58999995 999999999997 78888888898431 111100 0
Q ss_pred hhcCCCCCCeeee-CCH-HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcC--CcEEEeC
Q 031341 79 VCDMEQPLEIPVM-SDL-TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFG--MRSVVYV 137 (161)
Q Consensus 79 ~~g~~~~~~i~v~-~dl-~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~g--~~vVigt 137 (161)
+..+.....+.++ .++ ++.+ .+.|+||+.+.+... ...-..|.++| +++|.+.
T Consensus 87 L~eLNp~V~V~~~~~~l~~e~l------~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~ 144 (1008)
T TIGR01408 87 LAELNPYVHVSSSSVPFNEEFL------DKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISAD 144 (1008)
T ss_pred HHHHCCCceEEEecccCCHHHH------cCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 0011101122222 223 3344 378999987654444 45557888888 7777653
No 453
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.14 E-value=0.22 Score=38.73 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=25.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
.++.|+|++|.+|+.+++.+.. .+.++..+ ++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~-~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAR-EGARVVLV-GR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE-cC
Confidence 6899999899999999999875 56776644 44
No 454
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=0.23 Score=43.11 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=67.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeee--eCCHHHHHhcccccCCccEE
Q 031341 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 34 ~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v--~~dl~~~l~~~~~~~~~DVV 110 (161)
...-+.|.||+|..|+.+++.+. +.+... +...++... ..++..+|.. ....|. -..++++. ...+||
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~-~~g~~~-aLAgRs~~kl~~l~~~LG~~-~~~~p~~~p~~~~~~~------~~~~VV 75 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLA-REGLTA-ALAGRSSAKLDALRASLGPE-AAVFPLGVPAALEAMA------SRTQVV 75 (382)
T ss_pred cceeEEEEccccchhHHHHHHHH-HcCCch-hhccCCHHHHHHHHHhcCcc-ccccCCCCHHHHHHHH------hcceEE
Confidence 34678999999999999999987 556655 233332100 1122333332 111122 12344444 378999
Q ss_pred EEccCchhH--HHHHHHHHHcCCcEEEeCCC-CC-HHHHHHH-HHHhhhcCee
Q 031341 111 IDFTDASTV--YDNVKQATAFGMRSVVYVPH-IQ-LETVSAL-SAFCDKASMV 158 (161)
Q Consensus 111 IDfT~p~~~--~~~~~~al~~g~~vVigttg-~~-~e~~~~L-~~~A~~~~Vv 158 (161)
+.+.-|-.. .+.+..|+.+|.+-.= -|| .. -|+...+ .+-|++.++.
T Consensus 76 lncvGPyt~~g~plv~aC~~~GTdY~D-iTGEi~~fe~~i~~yh~~A~~~Ga~ 127 (382)
T COG3268 76 LNCVGPYTRYGEPLVAACAAAGTDYAD-ITGEIMFFENSIDLYHAQAADAGAR 127 (382)
T ss_pred EeccccccccccHHHHHHHHhCCCeee-ccccHHHHHHHHHHHHHHHHhcCCE
Confidence 988888766 4899999999999652 233 11 1333333 5556666543
No 455
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.11 E-value=0.41 Score=39.67 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=50.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVID 112 (161)
=+|.|.|++|.+|...++.+. .-+. +++++.++......+.+.+|.. .+..+ .++.+.+.++. ...+|+++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~~-~~gvd~vid 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQLLKSELGFD---AAINYKTDNVAERLRELC-PEGVDVYFD 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHhcCCc---EEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence 479999999999999887655 6687 7776655321101111112221 11111 23433332211 136999999
Q ss_pred ccCchhHHHHHHHHHH-cCCcEEEe
Q 031341 113 FTDASTVYDNVKQATA-FGMRSVVY 136 (161)
Q Consensus 113 fT~p~~~~~~~~~al~-~g~~vVig 136 (161)
++..... +.+..+++ .|.-+.+|
T Consensus 231 ~~g~~~~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 231 NVGGEIS-DTVISQMNENSHIILCG 254 (345)
T ss_pred CCCcHHH-HHHHHHhccCCEEEEEe
Confidence 8754443 44444444 44444455
No 456
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=93.07 E-value=1.4 Score=38.25 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=48.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|||+|+| +|.-...+++.+.++++...+.+ ++...|.. ... + .+.+ +.|.+++++ ++++.++|+++-.+
T Consensus 1 ~kvliiG-~G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~~---~~~---~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~ 70 (420)
T PRK00885 1 MKVLVIG-SGGREHALAWKLAQSPLVEKVYV-APGNAGTA---LLA---E-NVVIDVTDIEALVA-FAKEEGIDLTVVGP 70 (420)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEE-eCCCHHHH---hhc---c-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 6999999 58666678888877777654444 43222210 000 1 1111 256666532 23346799887322
Q ss_pred CchhHHHHHHHHHHcCCcEE
Q 031341 115 DASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vV 134 (161)
-.......+..+.+.|++++
T Consensus 71 e~~l~~~~~~~l~~~gi~~~ 90 (420)
T PRK00885 71 EAPLVAGIVDAFRAAGLPIF 90 (420)
T ss_pred chHHHHHHHHHHHHCCCcEE
Confidence 21222344556667888854
No 457
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.06 E-value=1.2 Score=33.90 Aligned_cols=80 Identities=18% Similarity=0.073 Sum_probs=45.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~-v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-||.|+|+ |++|...++.+. ..+.+++ +++++. ..++.++. .+. ....+++..- .+.|+||-+|
T Consensus 14 ~~vlVvGG-G~va~rka~~Ll-~~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~dl-----~~a~lViaaT 78 (157)
T PRK06719 14 KVVVIIGG-GKIAYRKASGLK-DTGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDDI-----KDAHLIYAAT 78 (157)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhcC-----CCceEEEECC
Confidence 48999995 999999999887 4677877 445432 12222211 111 1233333322 3789888677
Q ss_pred CchhHHHHHHHHHHcC
Q 031341 115 DASTVYDNVKQATAFG 130 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g 130 (161)
.-+.....+..+.+.+
T Consensus 79 ~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 79 NQHAVNMMVKQAAHDF 94 (157)
T ss_pred CCHHHHHHHHHHHHHC
Confidence 5555544443333334
No 458
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.03 E-value=0.82 Score=36.16 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=26.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~-~~g~~V~~~~r 43 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFA-EAGARVHVCDV 43 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHH-HCCCEEEEEeC
Confidence 689999999999999999997 56788665443
No 459
>PRK07589 ornithine cyclodeaminase; Validated
Probab=93.02 E-value=0.29 Score=42.28 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=60.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+++|+| +|..++.+++.+.....++=+-+++++... ....+.... ...++.+.++.++++. ++|+|+=+|
T Consensus 130 ~~l~iiG-aG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-~~~~v~~~~~~~~av~------~ADIIvtaT 201 (346)
T PRK07589 130 RTMALIG-NGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-PGLRIVACRSVAEAVE------GADIITTVT 201 (346)
T ss_pred cEEEEEC-CcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-cCCcEEEeCCHHHHHh------cCCEEEEec
Confidence 5799999 599999999999887788888888865321 111111110 0134556799999985 799999555
Q ss_pred CchhHHHHH-HHHHHcCCcEE-EeC
Q 031341 115 DASTVYDNV-KQATAFGMRSV-VYV 137 (161)
Q Consensus 115 ~p~~~~~~~-~~al~~g~~vV-igt 137 (161)
+.....+.+ ...++.|.||. +|.
T Consensus 202 ~S~~~~Pvl~~~~lkpG~hV~aIGs 226 (346)
T PRK07589 202 ADKTNATILTDDMVEPGMHINAVGG 226 (346)
T ss_pred CCCCCCceecHHHcCCCcEEEecCC
Confidence 322211222 24568899876 453
No 460
>PRK09186 flagellin modification protein A; Provisional
Probab=92.99 E-value=0.83 Score=36.03 Aligned_cols=31 Identities=35% Similarity=0.311 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
-+|.|.|++|++|+.+++.+. ..+.+++...
T Consensus 5 k~vlItGas~giG~~~a~~l~-~~g~~v~~~~ 35 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAIL-EAGGIVIAAD 35 (256)
T ss_pred CEEEEECCCchHHHHHHHHHH-HCCCEEEEEe
Confidence 469999999999999999997 5688877664
No 461
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.96 E-value=2 Score=34.10 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=26.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 8 k~~lItGas~gIG~~~a~~l~-~~G~~v~~~~~ 39 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFL-REGAKVAVLYN 39 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeC
Confidence 479999999999999999997 45788775443
No 462
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.96 E-value=1.1 Score=35.67 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=26.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
-+|.|+|++|.+|+.+++.+. ..+.+++.+.
T Consensus 8 ~~vlItGasggIG~~~a~~l~-~~G~~v~~~~ 38 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLA-AEGATVVVGD 38 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH-HcCCEEEEEe
Confidence 479999999999999999998 4578876553
No 463
>PRK12742 oxidoreductase; Provisional
Probab=92.95 E-value=0.75 Score=35.86 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=26.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-+|.|.|++|.+|+.+++.+. ..+.+++....
T Consensus 7 k~vlItGasggIG~~~a~~l~-~~G~~v~~~~~ 38 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFV-TDGANVRFTYA 38 (237)
T ss_pred CEEEEECCCChHHHHHHHHHH-HCCCEEEEecC
Confidence 479999999999999999987 56788775543
No 464
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=92.80 E-value=0.21 Score=42.21 Aligned_cols=94 Identities=9% Similarity=-0.004 Sum_probs=51.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g-~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-+++|+| +|..++.+++.+...-.++=+-++++.... ....+.+... ...+...+|.++++. ++|+|+=+|
T Consensus 129 ~~l~viG-aG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~------~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIG-AGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVR------GADIIVTAT 200 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHT------TSSEEEE--
T ss_pred ceEEEEC-CCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhcc------cCCEEEEcc
Confidence 4799999 599999999999886668889999975311 1111111110 234556789999985 799999555
Q ss_pred CchhHHHHH-HHHHHcCCcEE-EeC
Q 031341 115 DASTVYDNV-KQATAFGMRSV-VYV 137 (161)
Q Consensus 115 ~p~~~~~~~-~~al~~g~~vV-igt 137 (161)
+.....+.+ ...++.|.|+. +|.
T Consensus 201 ~s~~~~P~~~~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 201 PSTTPAPVFDAEWLKPGTHINAIGS 225 (313)
T ss_dssp --SSEEESB-GGGS-TT-EEEE-S-
T ss_pred CCCCCCccccHHHcCCCcEEEEecC
Confidence 322200111 23567888876 443
No 465
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.79 E-value=0.99 Score=40.45 Aligned_cols=87 Identities=23% Similarity=0.185 Sum_probs=49.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCC--HHHHHhcccccCCccEEEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID 112 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~d--l~~~l~~~~~~~~~DVVID 112 (161)
+.||+|+| .|+.|+..++.+. ..+.++. +.|....-...... .. ...++.+... ..+-+ ..+|+||
T Consensus 7 ~~kv~V~G-LG~sG~a~a~~L~-~~G~~v~-v~D~~~~~~~~~~~-~~-~~~~i~~~~g~~~~~~~------~~~d~vV- 74 (448)
T COG0771 7 GKKVLVLG-LGKSGLAAARFLL-KLGAEVT-VSDDRPAPEGLAAQ-PL-LLEGIEVELGSHDDEDL------AEFDLVV- 74 (448)
T ss_pred CCEEEEEe-cccccHHHHHHHH-HCCCeEE-EEcCCCCccchhhh-hh-hccCceeecCccchhcc------ccCCEEE-
Confidence 57999999 7999999999887 5566654 66632211111111 00 0234443311 11222 3789888
Q ss_pred ccC--chhHHHHHHHHHHcCCcEE
Q 031341 113 FTD--ASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 113 fT~--p~~~~~~~~~al~~g~~vV 134 (161)
.|+ |.. .+.+..|.+.|++++
T Consensus 75 ~SPGi~~~-~p~v~~A~~~gi~i~ 97 (448)
T COG0771 75 KSPGIPPT-HPLVEAAKAAGIEII 97 (448)
T ss_pred ECCCCCCC-CHHHHHHHHcCCcEE
Confidence 662 222 236677777777765
No 466
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.78 E-value=0.5 Score=39.89 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=25.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd~ 69 (161)
+||+|+|++|..|..++..+...+-. +|+. +|+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~l-vd~ 34 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINL-ISR 34 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EEC
Confidence 68999998899999999998866543 4554 453
No 467
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.77 E-value=0.75 Score=32.29 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=50.7
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-eCC---HHHHHhcccccCCccEEEEc
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD---LTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v-~~d---l~~~l~~~~~~~~~DVVIDf 113 (161)
|.|+| .|++|+.+++.+.+ .+.+++ ++|.+. ....++. +.++.+ +.| .+.+ .+. .-.++|.+|-.
T Consensus 1 vvI~G-~g~~~~~i~~~L~~-~~~~vv-vid~d~--~~~~~~~----~~~~~~i~gd~~~~~~l-~~a-~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKE-GGIDVV-VIDRDP--ERVEELR----EEGVEVIYGDATDPEVL-ERA-GIEKADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEE-EEESSH--HHHHHHH----HTTSEEEES-TTSHHHH-HHT-TGGCESEEEEE
T ss_pred eEEEc-CCHHHHHHHHHHHh-CCCEEE-EEECCc--HHHHHHH----hcccccccccchhhhHH-hhc-CccccCEEEEc
Confidence 67999 69999999999987 665665 555332 1111111 122322 322 2222 110 01367877755
Q ss_pred cCchhH-HHHHHHHHH-cC-CcEEEeCCCCCHHHHHHHHHH
Q 031341 114 TDASTV-YDNVKQATA-FG-MRSVVYVPHIQLETVSALSAF 151 (161)
Q Consensus 114 T~p~~~-~~~~~~al~-~g-~~vVigttg~~~e~~~~L~~~ 151 (161)
|.-+.. ...+..+.+ ++ .+++.-. .+++..+.|.++
T Consensus 70 ~~~d~~n~~~~~~~r~~~~~~~ii~~~--~~~~~~~~l~~~ 108 (116)
T PF02254_consen 70 TDDDEENLLIALLARELNPDIRIIARV--NDPENAELLRQA 108 (116)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSEEEEEE--SSHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHC
Confidence 543333 344455544 33 4554422 455665666553
No 468
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.73 E-value=0.96 Score=39.49 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=64.3
Q ss_pred ccccccccee----EEeeCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 031341 15 ISQNVKAKRF----ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV 90 (161)
Q Consensus 15 ~~~~~~~~~~----~~~~~~~~~~~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v 90 (161)
-++.+|+-+| ..||+=.+- -++|+| +|++|+++++.+. .=++.+++.-+... .+.++ ..|+..
T Consensus 125 A~~s~k~g~wnr~~~~G~el~GK---TLgvlG-~GrIGseVA~r~k-~~gm~vI~~dpi~~--~~~~~------a~gvq~ 191 (406)
T KOG0068|consen 125 ASASMKEGKWNRVKYLGWELRGK---TLGVLG-LGRIGSEVAVRAK-AMGMHVIGYDPITP--MALAE------AFGVQL 191 (406)
T ss_pred hheeeecCceeecceeeeEEecc---EEEEee-cccchHHHHHHHH-hcCceEEeecCCCc--hHHHH------hcccee
Confidence 3444555444 345554433 389999 8999999999876 66777665444221 12222 334443
Q ss_pred eCCHHHHHhcccccCCccEEEEcc--CchhH---HHHHHHHHHcCCcEEEeCC
Q 031341 91 MSDLTMVLGSISQSKARAVVIDFT--DASTV---YDNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 91 ~~dl~~~l~~~~~~~~~DVVIDfT--~p~~~---~~~~~~al~~g~~vVigtt 138 (161)
.+++|++. .+|-+---+ +|++. .+...+.++.|+.+|--.-
T Consensus 192 -vsl~Eil~------~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aR 237 (406)
T KOG0068|consen 192 -VSLEEILP------KADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVAR 237 (406)
T ss_pred -eeHHHHHh------hcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecC
Confidence 48999985 789766444 34332 3566788899999875443
No 469
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.72 E-value=0.66 Score=34.16 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=56.0
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------CcchhhhhcCCCCCCeee-eCCHHHHHhcccccCCccEE
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------GEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~------g~~~~~~~g~~~~~~i~v-~~dl~~~l~~~~~~~~~DVV 110 (161)
|+|+|+ |.||..++-.+.+ .+.++.-+..+... |..+....+-. ....+. ..+..+.. ..+|+|
T Consensus 1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~D~v 71 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSRSPRLEAIKEQGLTITGPDGDE-TVQPPIVISAPSADA------GPYDLV 71 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHH-TTCEEEEEESHHHHHHHHHHCEEEEETTEEE-EEEEEEEESSHGHHH------STESEE
T ss_pred CEEECc-CHHHHHHHHHHHH-CCCceEEEEccccHHhhhheeEEEEecccce-ecccccccCcchhcc------CCCcEE
Confidence 689995 9999999999976 88887766654310 10000000000 001111 12221222 489999
Q ss_pred EEccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031341 111 IDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (161)
Q Consensus 111 IDfT~p~~~~~~~~~---al~~g~~vVigttg~~~e~~~~L~~~A~~~~V 157 (161)
|-++-.....+.+.. .+..+.++|+---|+..+ +.|.+.-.+..|
T Consensus 72 iv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~--~~l~~~~~~~~v 119 (151)
T PF02558_consen 72 IVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNE--EVLAEYFPRPRV 119 (151)
T ss_dssp EE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHH--HHHHCHSTGSGE
T ss_pred EEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcH--HHHHHHcCCCcE
Confidence 977754444444433 333333566666677644 345555433333
No 470
>PRK08278 short chain dehydrogenase; Provisional
Probab=92.69 E-value=1.4 Score=35.58 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=26.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r 38 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAA-RDGANIVIAAK 38 (273)
T ss_pred CEEEEECCCchHHHHHHHHHH-HCCCEEEEEec
Confidence 368999999999999999997 45788776644
No 471
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=92.68 E-value=0.98 Score=38.69 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=65.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~-~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
-.|.|..|+.|.+..++-.|. .....+++++-+..+ .+..+-+|. -..+.-|++++++-. ...-|+|||+
T Consensus 137 ~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N--~~Fve~lg~--Yd~V~~Yd~i~~l~~-----~~~~v~VDfa 207 (314)
T PF11017_consen 137 AQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARN--VAFVESLGC--YDEVLTYDDIDSLDA-----PQPVVIVDFA 207 (314)
T ss_pred cEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcc--hhhhhccCC--ceEEeehhhhhhccC-----CCCEEEEECC
Confidence 468999999999999999998 789999999998543 222233333 234566888888754 3677999999
Q ss_pred CchhHHHHHHHHHHc--CCcEEEeCCCCC
Q 031341 115 DASTVYDNVKQATAF--GMRSVVYVPHIQ 141 (161)
Q Consensus 115 ~p~~~~~~~~~al~~--g~~vVigttg~~ 141 (161)
-...+...+..-+.. ...+.+|-|.++
T Consensus 208 G~~~~~~~Lh~~l~d~l~~~~~VG~th~~ 236 (314)
T PF11017_consen 208 GNGEVLAALHEHLGDNLVYSCLVGATHWD 236 (314)
T ss_pred CCHHHHHHHHHHHhhhhhEEEEEEccCcc
Confidence 665554433322222 245668877553
No 472
>PLN02740 Alcohol dehydrogenase-like
Probab=92.66 E-value=0.68 Score=39.55 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=50.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeee-eC----CHHHHHhcccccCCccEE
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS----DLTMVLGSISQSKARAVV 110 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~e-Lvavvd~~~~g~~~~~~~g~~~~~~i~v-~~----dl~~~l~~~~~~~~~DVV 110 (161)
+|.|+|+ |.+|...++.+. .-+.+ ++++ ++.....+...-+|. +..+ +. ++.+.+.++.. ..+|++
T Consensus 201 ~VlV~G~-G~vG~~a~q~ak-~~G~~~Vi~~-~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~v~~~~~-~g~dvv 272 (381)
T PLN02740 201 SVAIFGL-GAVGLAVAEGAR-ARGASKIIGV-DINPEKFEKGKEMGI----TDFINPKDSDKPVHERIREMTG-GGVDYS 272 (381)
T ss_pred EEEEECC-CHHHHHHHHHHH-HCCCCcEEEE-cCChHHHHHHHHcCC----cEEEecccccchHHHHHHHHhC-CCCCEE
Confidence 7999995 999999888765 56774 5544 432111111111221 1111 11 13332222111 269999
Q ss_pred EEccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031341 111 IDFTDASTVYDNVKQATAF--GMRSVVYVP 138 (161)
Q Consensus 111 IDfT~p~~~~~~~~~al~~--g~~vVigtt 138 (161)
+|++-.......+..++.. |.-+++|.+
T Consensus 273 id~~G~~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 273 FECAGNVEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred EECCCChHHHHHHHHhhhcCCCEEEEEccC
Confidence 9999754455555455544 666777764
No 473
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=92.66 E-value=0.74 Score=40.63 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=53.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHH---HHhcccccCCccEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAVV 110 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~--~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~---~l~~~~~~~~~DVV 110 (161)
-|+.|+| +|.-|..+.+.+.++ .+++++|.++.+.... . -.|+|+..+.++ .+. +.++|-|
T Consensus 125 rrvLIIG-ag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~---~------i~gvpVlG~~~dl~~~v~----~~~Id~V 190 (442)
T TIGR03013 125 RRILVLG-TGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA---Y------VPSEHVIENGDGLVEYVL----RHRIDEI 190 (442)
T ss_pred CcEEEEE-CCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc---c------cCCCcccCCHHHHHHHHH----hCCCCEE
Confidence 4799999 599999995544333 4689999996321111 1 235677665544 444 3678987
Q ss_pred EEccCchhH----HHHHHHHHHcCCcEEE
Q 031341 111 IDFTDASTV----YDNVKQATAFGMRSVV 135 (161)
Q Consensus 111 IDfT~p~~~----~~~~~~al~~g~~vVi 135 (161)
+ .+.|... .+.+..+.+.|+++.+
T Consensus 191 i-IAlp~~~~~~~~~~l~~~~~~gv~V~i 218 (442)
T TIGR03013 191 V-IALDERRGSLPVDELLECKLSGIEVVD 218 (442)
T ss_pred E-EECchhhcchHHHHHHHHHhCCCEEEE
Confidence 7 4545433 2346677788888764
No 474
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.60 E-value=0.55 Score=39.52 Aligned_cols=87 Identities=8% Similarity=0.052 Sum_probs=46.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEccC
Q 031341 37 KVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~-~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT~ 115 (161)
+|.|.|+ |.+|...+..+.. ..+.++++ +++.....+....+ +... .+++..+. ..+|++||++-
T Consensus 166 ~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~-~~~~~~k~~~a~~~------~~~~--~~~~~~~~----~g~d~viD~~G 231 (341)
T cd08237 166 VIGVWGD-GNLGYITALLLKQIYPESKLVV-FGKHQEKLDLFSFA------DETY--LIDDIPED----LAVDHAFECVG 231 (341)
T ss_pred EEEEECC-CHHHHHHHHHHHHhcCCCcEEE-EeCcHhHHHHHhhc------Ccee--ehhhhhhc----cCCcEEEECCC
Confidence 6999995 9999998887765 34456554 44322111111111 1111 11222221 35899999995
Q ss_pred c---hhHHHHHHHHHHc-CCcEEEeC
Q 031341 116 A---STVYDNVKQATAF-GMRSVVYV 137 (161)
Q Consensus 116 p---~~~~~~~~~al~~-g~~vVigt 137 (161)
. ....+.+..+++. |.-+++|.
T Consensus 232 ~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 232 GRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CCccHHHHHHHHHhCcCCcEEEEEee
Confidence 2 2334444444444 55555664
No 475
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.51 E-value=1.1 Score=42.52 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=49.0
Q ss_pred eeEEEEcCCCHHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i-~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVIDf 113 (161)
-+|.|+| .|+.|... ++.+ ...|.++. +.|.... ....++ .+.|+.++. ...+.+ ..+|+|| .
T Consensus 5 ~~i~viG-~G~sG~salA~~L-~~~G~~V~-~sD~~~~-~~~~~L----~~~gi~~~~g~~~~~~------~~~d~vV-~ 69 (809)
T PRK14573 5 LFYHFIG-IGGIGMSALAHIL-LDRGYSVS-GSDLSEG-KTVEKL----KAKGARFFLGHQEEHV------PEDAVVV-Y 69 (809)
T ss_pred ceEEEEE-ecHHhHHHHHHHH-HHCCCeEE-EECCCCC-hHHHHH----HHCCCEEeCCCCHHHc------CCCCEEE-E
Confidence 3699999 59999998 5554 58899865 5774321 122222 134666642 222334 2689888 5
Q ss_pred cC--chhHHHHHHHHHHcCCcEE
Q 031341 114 TD--ASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 114 T~--p~~~~~~~~~al~~g~~vV 134 (161)
|+ |.. .+.+..|.+.|++++
T Consensus 70 SpgI~~~-~p~~~~a~~~gi~v~ 91 (809)
T PRK14573 70 SSSISKD-NVEYLSAKSRGNRLV 91 (809)
T ss_pred CCCcCCC-CHHHHHHHHCCCcEE
Confidence 52 332 344556667777765
No 476
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=92.50 E-value=0.74 Score=36.82 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=26.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
++.|.|+++.+|+.+++.+. ..+.+++.+.++
T Consensus 10 ~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~~ 41 (260)
T PRK08416 10 TLVISGGTRGIGKAIVYEFA-QSGVNIAFTYNS 41 (260)
T ss_pred EEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence 68899999999999999998 568887765443
No 477
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.48 E-value=1.5 Score=38.20 Aligned_cols=84 Identities=21% Similarity=0.137 Sum_probs=51.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeC--CHHHHHhcccccCCccEEEEc
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~--dl~~~l~~~~~~~~~DVVIDf 113 (161)
-||.|+| .|+.|+..++.+. ..|.++. +.|.... ....+.+ +.++.++. +....+ ...|++| .
T Consensus 7 ~~i~v~G-~G~sG~s~~~~l~-~~G~~v~-~~D~~~~-~~~~~~l----~~g~~~~~~~~~~~~~------~~~d~vv-~ 71 (438)
T PRK03806 7 KKVVIIG-LGLTGLSCVDFFL-ARGVTPR-VIDTRIT-PPGLDKL----PENVERHTGSLNDEWL------LAADLIV-A 71 (438)
T ss_pred CEEEEEe-eCHHHHHHHHHHH-HCCCeEE-EEcCCCC-chhHHHH----hcCCEEEeCCCCHHHh------cCCCEEE-E
Confidence 4799999 5999999998654 6788765 4774321 1111111 12555532 122333 2678877 5
Q ss_pred cC--chhHHHHHHHHHHcCCcEEE
Q 031341 114 TD--ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 114 T~--p~~~~~~~~~al~~g~~vVi 135 (161)
++ |.. .+.+..|.++|++++.
T Consensus 72 spgi~~~-~~~~~~a~~~g~~v~~ 94 (438)
T PRK03806 72 SPGIALA-HPSLSAAADAGIEIVG 94 (438)
T ss_pred CCCCCCC-CHHHHHHHHCCCeEEE
Confidence 53 333 5778888899998654
No 478
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=92.47 E-value=0.81 Score=39.55 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS 71 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~ 71 (161)
.-||.|+|+ |.||+.+++.+.+ .+..=+-++.++.
T Consensus 174 ~k~vLvIGa-Gem~~l~a~~L~~-~g~~~i~v~nRt~ 208 (338)
T PRK00676 174 KASLLFIGY-SEINRKVAYYLQR-QGYSRITFCSRQQ 208 (338)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 359999995 9999999999985 4555455666653
No 479
>PRK07577 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.27 Score=38.27 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=26.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.+|.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 4 k~vlItG~s~~iG~~ia~~l~-~~G~~v~~~~r 35 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLA-NLGHQVIGIAR 35 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeC
Confidence 368999999999999999987 56788876654
No 480
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.59 Score=36.71 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=26.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-++.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~-~G~~v~~~~r 37 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAR-EGARVVVADR 37 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHH-CCCeEEEecC
Confidence 3799999999999999999985 5788776654
No 481
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.42 E-value=0.81 Score=40.61 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=66.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhh-hhcCCCCCCeeeeCCHHHHHhc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGM-VCDMEQPLEIPVMSDLTMVLGS 100 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~-------~~g~------~~~~-~~g~~~~~~i~v~~dl~~~l~~ 100 (161)
..+|+|+| .|++|--++-+.. ..|++++|+ |.+ ..|+ +..+ +...-+......++|.+++-
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA-~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~-- 83 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFA-SAGFKVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK-- 83 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHH-HcCCceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc--
Confidence 38999999 8999999988775 778998864 421 1121 1111 00000123356677777763
Q ss_pred ccccCCccEEEEcc-Cc------------hhHHHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHH
Q 031341 101 ISQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSALSA 150 (161)
Q Consensus 101 ~~~~~~~DVVIDfT-~p------------~~~~~~~~~al~~g~~vVigtt---g~~~e~~~~L~~ 150 (161)
.+|++|.+- +| ..+.+.+...|+.|--||++.| |-+++...-|.+
T Consensus 84 -----~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 84 -----ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred -----cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 689888553 22 1344566788999999999976 556555554444
No 482
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.39 E-value=1.7 Score=38.69 Aligned_cols=85 Identities=21% Similarity=0.116 Sum_probs=49.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Cc-chhhhhcCCCCCCeeeeC-CHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GE-DIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~-g~-~~~~~~g~~~~~~i~v~~-dl~~~l~~~~~~~~~DVVID 112 (161)
-||+|+| .|+-|+..++.+. ..+.+++ +.|.... .. ...++. +.+..++. ..++.+. ++|+||
T Consensus 9 ~~v~v~G-~G~sG~~~~~~l~-~~g~~v~-~~d~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~d~vV- 74 (468)
T PRK04690 9 RRVALWG-WGREGRAAYRALR-AHLPAQA-LTLFCNAVEAREVGALA----DAALLVETEASAQRLA------AFDVVV- 74 (468)
T ss_pred CEEEEEc-cchhhHHHHHHHH-HcCCEEE-EEcCCCcccchHHHHHh----hcCEEEeCCCChHHcc------CCCEEE-
Confidence 3799999 5999999999876 6778755 4663211 11 111211 22222222 2233443 689888
Q ss_pred ccC--chhHHHHHHHHHHcCCcEEE
Q 031341 113 FTD--ASTVYDNVKQATAFGMRSVV 135 (161)
Q Consensus 113 fT~--p~~~~~~~~~al~~g~~vVi 135 (161)
.|+ |. ..+.+.+|.+.|++++.
T Consensus 75 ~SpgI~~-~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 75 KSPGISP-YRPEALAAAARGTPFIG 98 (468)
T ss_pred ECCCCCC-CCHHHHHHHHcCCcEEE
Confidence 553 33 34566777778888655
No 483
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=92.38 E-value=1.3 Score=33.40 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=59.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc--
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-- 114 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT-- 114 (161)
+|+++.=+|.+|..++..+. ..++-+..++..-+ +.++ ++.++++.+..++...+++-+-
T Consensus 3 ~valisQSG~~~~~~~~~~~-~~g~g~s~~vs~Gn-------------~~dv----~~~d~l~~~~~D~~t~~I~ly~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQ-DRGIGFSYVVSVGN-------------EADV----DFADLLEYLAEDPDTRVIVLYLEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHH-HTT-EESEEEE-TT--------------SSS-----HHHHHHHHCT-SS--EEEEEES-
T ss_pred CEEEEECCHHHHHHHHHHHH-HcCCCeeEEEEeCc-------------cccC----CHHHHHHHHhcCCCCCEEEEEccC
Confidence 57888889999999999876 55787776666311 1111 3444444333355666666443
Q ss_pred --CchhHHHHHHHHHHcCCcEEEeCCCCCH--------------HHHHHHHHHhhhcCeee
Q 031341 115 --DASTVYDNVKQATAFGMRSVVYVPHIQL--------------ETVSALSAFCDKASMVS 159 (161)
Q Consensus 115 --~p~~~~~~~~~al~~g~~vVigttg~~~--------------e~~~~L~~~A~~~~Vv~ 159 (161)
.|....+.++.+..+ ||||+=++|-++ -..+...++.++.+|+.
T Consensus 65 ~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~ 124 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVR 124 (138)
T ss_dssp -S-HHHHHHHHHHHCCC-S-EEEEE---------------------HHHHHHHHHHCTEEE
T ss_pred CCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceE
Confidence 577777888877777 999976655322 23456777888888775
No 484
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.36 E-value=0.81 Score=38.47 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=49.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~--~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVI 111 (161)
=+|.|.|+ |.+|...++.+. ..+.+++++..+. ....+..+-+|.. ...+ .++++... ...+|++|
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak-~~G~~vi~~~~~~~~~~~~~~~~~~Ga~----~v~~~~~~~~~~~~----~~~~d~vi 243 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLR-LRGFEVYVLNRRDPPDPKADIVEELGAT----YVNSSKTPVAEVKL----VGEFDLII 243 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCE----EecCCccchhhhhh----cCCCCEEE
Confidence 37999995 999999887655 5678876654321 1111111212211 1111 12222111 14689999
Q ss_pred EccCchhHH-HHHHHHHHcCCcEEEeCC
Q 031341 112 DFTDASTVY-DNVKQATAFGMRSVVYVP 138 (161)
Q Consensus 112 DfT~p~~~~-~~~~~al~~g~~vVigtt 138 (161)
|++...... ..+......|.-+.+|.+
T Consensus 244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 244 EATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 999644343 444444455555567764
No 485
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=92.36 E-value=0.36 Score=40.88 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=41.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
|+|.|+||-+|+.+...+. ..|.++..+..+.... .... ...+...+.+++... -.+|+||..+
T Consensus 1 IliTGgTGlIG~~L~~~L~-~~gh~v~iltR~~~~~---~~~~----~~~v~~~~~~~~~~~-----~~~DavINLA 64 (297)
T COG1090 1 ILITGGTGLIGRALTARLR-KGGHQVTILTRRPPKA---SQNL----HPNVTLWEGLADALT-----LGIDAVINLA 64 (297)
T ss_pred CeEeccccchhHHHHHHHH-hCCCeEEEEEcCCcch---hhhc----Cccccccchhhhccc-----CCCCEEEECC
Confidence 5789999999999999875 7789999888754311 1111 111222244455443 2699999876
No 486
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.25 E-value=1.9 Score=34.26 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=25.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavv 67 (161)
-++.|.|++|.+|+.+++.+. ..+.+++.+.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~-~~G~~vv~~~ 38 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFA-REGAAVALAD 38 (260)
T ss_pred CEEEEECCCchHHHHHHHHHH-HCCCEEEEEe
Confidence 368999999999999999998 5678876543
No 487
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=92.25 E-value=1.6 Score=38.92 Aligned_cols=32 Identities=9% Similarity=0.280 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
..|||+| .|-||+.++-.+. +.++. |+|++++
T Consensus 4 ~~iGviG-LaVMG~NLaLNi~-~~G~~-VavyNRt 35 (473)
T COG0362 4 ADIGVIG-LAVMGSNLALNIA-DHGYT-VAVYNRT 35 (473)
T ss_pred cceeeEe-hhhhhHHHHHHHH-hcCce-EEEEeCC
Confidence 5699999 8999999999986 77887 4577764
No 488
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.23 E-value=0.66 Score=39.08 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=26.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
|||+|+|+ |.+|..++..+....-..-+.++|+.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 58999995 99999999988755434556688854
No 489
>PRK06523 short chain dehydrogenase; Provisional
Probab=92.21 E-value=2.3 Score=33.72 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
-+|.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 10 k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~r 41 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLL-EAGARVVTTAR 41 (260)
T ss_pred CEEEEECCCCchhHHHHHHHH-HCCCEEEEEeC
Confidence 579999999999999999997 45888776544
No 490
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.19 E-value=0.31 Score=40.34 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=24.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~ 70 (161)
-+|.|+|+ |++|+.++..+.. .++.=+-+++++
T Consensus 124 k~vlVlGa-Gg~a~ai~~aL~~-~g~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGA-GGAARAVILPLLD-LGVAEITIVNRT 156 (278)
T ss_pred CEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEEeCC
Confidence 58999995 9999999999984 454335566654
No 491
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=92.16 E-value=0.93 Score=36.39 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=26.4
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 38 V~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
+.|.|++|.+|+.+++.+. ..+.+++...++
T Consensus 4 ~lITGas~gIG~~~a~~l~-~~G~~V~~~~~~ 34 (267)
T TIGR02685 4 AVVTGAAKRIGSSIAVALH-QEGYRVVLHYHR 34 (267)
T ss_pred EEEeCCCCcHHHHHHHHHH-hCCCeEEEEcCC
Confidence 7899999999999999997 578888866543
No 492
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.13 E-value=0.48 Score=40.07 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=51.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhhcCCCCCCeeeeC---CHHHHHhcccccCCccEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVI 111 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~-~~~~~g~~~~~~i~v~~---dl~~~l~~~~~~~~~DVVI 111 (161)
=+|.|.|++|.+|...++.+. ..+.+++++..+... .+ +...+|.. .+.-+. ++.+.+.++. ...+|+++
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk-~~G~~Vi~~~~~~~k-~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~-~~gvD~v~ 233 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAK-LHGCYVVGSAGSSQK-VDLLKNKLGFD---EAFNYKEEPDLDAALKRYF-PEGIDIYF 233 (348)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEcCCHHH-HHHHHHhcCCC---EEEECCCcccHHHHHHHHC-CCCcEEEE
Confidence 369999998999999887654 678887765543211 11 11112221 111121 4444332211 13689999
Q ss_pred EccCchhHHHHHHHHHH-cCCcEEEeC
Q 031341 112 DFTDASTVYDNVKQATA-FGMRSVVYV 137 (161)
Q Consensus 112 DfT~p~~~~~~~~~al~-~g~~vVigt 137 (161)
|++... ..+....+++ .|.-+++|.
T Consensus 234 d~vG~~-~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 234 DNVGGD-MLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred ECCCHH-HHHHHHHHhccCCEEEEECc
Confidence 988654 3444444444 445444554
No 493
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.10 E-value=1.7 Score=34.26 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
.+.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 4 ~vlItG~sg~iG~~la~~L~-~~g~~vi~~~r 34 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALA-AAGFDLAINDR 34 (256)
T ss_pred EEEEeCCCchHHHHHHHHHH-HCCCEEEEEec
Confidence 58899999999999999998 45788876543
No 494
>PRK12743 oxidoreductase; Provisional
Probab=92.07 E-value=1.3 Score=35.30 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=27.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
+|.|.|++|.+|+.+++.+.+ .+.+++.+.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~ 35 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQ-QGFDIGITWHS 35 (256)
T ss_pred EEEEECCCchHHHHHHHHHHH-CCCEEEEEeCC
Confidence 689999999999999999985 68888766554
No 495
>PRK06483 dihydromonapterin reductase; Provisional
Probab=92.02 E-value=3.8 Score=31.97 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=26.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031341 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (161)
Q Consensus 37 kV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd 68 (161)
++.|.|++|.+|+.+++.+. ..+.+++.+..
T Consensus 4 ~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r 34 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLL-AQGQPVIVSYR 34 (236)
T ss_pred eEEEECCCChHHHHHHHHHH-HCCCeEEEEeC
Confidence 68999999999999999987 56888876543
No 496
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.00 E-value=0.95 Score=38.14 Aligned_cols=97 Identities=19% Similarity=0.200 Sum_probs=49.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeee--CCHHHHHhcccccCCccEEEE
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID 112 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~e-Lvavvd~~~~g~~~~~~~g~~~~~~i~v~--~dl~~~l~~~~~~~~~DVVID 112 (161)
=+|.|.|+ |.+|...++.+. ..+.+ +++ ++++..-.+..+-.|.. .+.-+ .+..+.+.+......+|+++|
T Consensus 178 ~~VlV~G~-g~vG~~a~~~ak-~~G~~~Vi~-~~~~~~~~~~~~~~Ga~---~~i~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 178 DSVAVIGC-GGVGDAAIAGAA-LAGASKIIA-VDIDDRKLEWAREFGAT---HTVNSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCCeEEE-EcCCHHHHHHHHHcCCc---eEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 47999995 999999888665 56776 554 44321111111112210 01111 122222221111236899999
Q ss_pred ccCchhHHHHHHHHHH-cCCcEEEeCC
Q 031341 113 FTDASTVYDNVKQATA-FGMRSVVYVP 138 (161)
Q Consensus 113 fT~p~~~~~~~~~al~-~g~~vVigtt 138 (161)
++.-....+.+..+++ .|.-+++|.+
T Consensus 252 ~~g~~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 252 AVGRPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CCCCHHHHHHHHHHhccCCEEEEECCC
Confidence 9863334444444444 5665567754
No 497
>PRK08264 short chain dehydrogenase; Validated
Probab=91.99 E-value=0.33 Score=37.96 Aligned_cols=32 Identities=38% Similarity=0.475 Sum_probs=25.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEe
Q 031341 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAID 68 (161)
Q Consensus 36 ikV~ViGa~G~mGr~i~~~l~~~~~~-eLvavvd 68 (161)
-+|.|.|++|.+|+.+++.+.+ .+. +++.+..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~-~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLA-RGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCcccEEEEec
Confidence 3699999999999999999974 577 6554443
No 498
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.96 E-value=0.33 Score=37.69 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~ 69 (161)
+.+|.|.|++|.+|+.+++.+. ..+.+++.+.++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~-~~g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLA-RAGADVVVHYRS 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCC
Confidence 3589999999999999999987 567887665554
No 499
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=91.93 E-value=3 Score=36.96 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=52.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeeCCHHHHHhcccccCCccEEEEcc
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~~~~g~~~~~~~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVVIDfT 114 (161)
++||.|+| +|.=...++..+.++ +.++..+..+...|. ..+. ..+-..-..|++++++ ++++.++|.||-..
T Consensus 2 ~~kVLvlG-~G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a---~~~~~~~~~d~e~l~~-~~~~~~id~Vi~~~ 73 (435)
T PRK06395 2 TMKVMLVG-SGGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS---KKYLFYDEKDYDLIED-FALKNNVDIVFVGP 73 (435)
T ss_pred ceEEEEEC-CcHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc---cceeecCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 58999999 588788888878766 477777754322121 0010 0000111257766543 34457899887332
Q ss_pred CchhHHHHHHHHHHcCCcEE
Q 031341 115 DASTVYDNVKQATAFGMRSV 134 (161)
Q Consensus 115 ~p~~~~~~~~~al~~g~~vV 134 (161)
-+......+....+.|++++
T Consensus 74 d~~l~~~~~~~l~~~Gi~v~ 93 (435)
T PRK06395 74 DPVLATPLVNNLLKRGIKVA 93 (435)
T ss_pred ChHHHHHHHHHHHHCCCcEE
Confidence 22223344556678898854
No 500
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=91.92 E-value=1.7 Score=38.22 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=50.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhh-hcCCCCCCeeeeCCHHHHHhcccccCCccEE
Q 031341 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (161)
Q Consensus 35 ~ikV~ViGa~G~mGr~i~~~l~~~~~~eLvavvd~---~~~g~~~~~~-~g~~~~~~i~v~~dl~~~l~~~~~~~~~DVV 110 (161)
|-||+|+| .|.++..+++.+.++ |++++++... ...+....+. .-+......+-|.|.+.+++ ++++.++|+|
T Consensus 2 ~kkili~g-~g~~~~~~~~aa~~l-G~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~I 78 (449)
T TIGR00514 2 LDKILIAN-RGEIALRILRACKEL-GIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIIS-AAEITGADAI 78 (449)
T ss_pred cceEEEeC-CCHHHHHHHHHHHHc-CCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHH-HHHHhCCCEE
Confidence 34999999 599999999998754 8998877542 1111111110 00000001123555555543 2334689998
Q ss_pred EEccCc-hhHHHHHHHHHHcCCcEE
Q 031341 111 IDFTDA-STVYDNVKQATAFGMRSV 134 (161)
Q Consensus 111 IDfT~p-~~~~~~~~~al~~g~~vV 134 (161)
+-.... ......+..+.+.|++++
T Consensus 79 ~pg~g~~se~~~~a~~~e~~Gi~~~ 103 (449)
T TIGR00514 79 HPGYGFLSENANFAEQCERSGFTFI 103 (449)
T ss_pred EeCCCccccCHHHHHHHHHCCCcEE
Confidence 732100 111223455566777753
Done!