Query 031342
Match_columns 161
No_of_seqs 141 out of 1068
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 12:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03692 CxxCxxCC: Putative zi 99.6 7.4E-17 1.6E-21 112.6 2.7 67 59-128 1-72 (85)
2 COG0727 Predicted Fe-S-cluster 99.4 2E-14 4.2E-19 108.5 -0.1 77 54-133 7-95 (132)
3 PRK05170 hypothetical protein; 97.2 6.7E-05 1.5E-09 59.2 -0.2 47 59-121 23-69 (147)
4 COG2983 Uncharacterized conser 93.2 0.0098 2.1E-07 47.1 -2.3 20 101-120 54-73 (153)
5 PF11307 DUF3109: Protein of u 91.6 0.098 2.1E-06 42.8 1.6 78 55-132 15-132 (183)
6 PF12797 Fer4_2: 4Fe-4S bindin 26.1 22 0.00049 19.5 0.0 9 58-67 8-16 (22)
7 COG1143 NuoI Formate hydrogenl 24.7 57 0.0012 26.3 2.1 39 32-72 30-68 (172)
8 PF12837 Fer4_6: 4Fe-4S bindin 19.6 36 0.00078 18.6 -0.0 11 58-69 7-17 (24)
9 PRK08222 hydrogenase 4 subunit 17.5 78 0.0017 25.3 1.5 37 31-70 13-49 (181)
10 PF06446 Hepcidin: Hepcidin; 16.5 33 0.00072 22.9 -0.7 7 63-69 50-56 (57)
No 1
>PF03692 CxxCxxCC: Putative zinc- or iron-chelating domain; InterPro: IPR005358 This family of proteins contain 8 conserved cysteines that may form a zinc binding site. The function of these proteins is unknown.
Probab=99.64 E-value=7.4e-17 Score=112.64 Aligned_cols=67 Identities=34% Similarity=0.640 Sum_probs=50.5
Q ss_pred CchhhhhhcCCCCCCCCcCCHHHhhcChhhHHh-----hhhhcCCCCccccccCCCCCCcccCCCCcccccCcch
Q 031342 59 RCVQGCGACCKLDKGPDFATPEEIFDDPSDVEL-----YRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAV 128 (161)
Q Consensus 59 ~C~~~CG~CC~~~~~~i~lt~~ei~~l~~~l~~-----y~~l~~~dg~C~FLd~~~~~CsIYe~RP~~CR~fPf~ 128 (161)
+|. +||.||+.. .+.++..|+.++...+.. .......+++|+||+.++++|+||++||++||+||++
T Consensus 1 ~C~-~Cg~CC~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~C~fL~~~~~~C~Iy~~RP~~CR~~p~~ 72 (85)
T PF03692_consen 1 KCR-QCGACCRGY--RVPLTPEEIERIAEHLGIEEEFFLERYAREDGPCPFLDEDNGRCSIYEVRPLICRTYPFW 72 (85)
T ss_pred Ccc-cHhHHHcCC--CcCCCHHHHHHHHHHhcCchhhhHHHhhccCCCCcCcCCCCCccCCcCccCHhHeeCccc
Confidence 585 899999943 356799998776644321 1112236789999997667999999999999999988
No 2
>COG0727 Predicted Fe-S-cluster oxidoreductase [General function prediction only]
Probab=99.42 E-value=2e-14 Score=108.50 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=50.8
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCHHHhhcCh--------hhHHhhh----hhcCCCCccccccCCCCCCcccCCCCcc
Q 031342 54 MEPLWRCVQGCGACCKLDKGPDFATPEEIFDDP--------SDVELYR----SLIGPDGWCINYEKSTRKCSIYPERPYF 121 (161)
Q Consensus 54 ~~~~f~C~~~CG~CC~~~~~~i~lt~~ei~~l~--------~~l~~y~----~l~~~dg~C~FLd~~~~~CsIYe~RP~~ 121 (161)
+...+.| ..||+||....... ...++.++. ..+..+. .....+++|+||+.+++.|+||++||.+
T Consensus 7 ~~~~~~c-~~Cg~cC~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~fl~~~~~~C~Iy~~RP~~ 83 (132)
T COG0727 7 KFIFFCC-EGCGACCCAIEVSL--PEPGFDRGELKGYPADTEALPKYLRCKLLDVDINGRCVFLDGETKLCRIYEIRPLA 83 (132)
T ss_pred hhhhhhH-HHhhHHhcCCCCCc--chhhhhHHHhcCCCccceeecccceeeeecccCCCCCEEecCCCCceeecCcCchh
Confidence 3456789 59999999765322 222222221 0011121 2224556999999776789999999999
Q ss_pred cccCcchhhhhh
Q 031342 122 CRVEPAVFLSLY 133 (161)
Q Consensus 122 CR~fPf~~~~~~ 133 (161)
||+||++.....
T Consensus 84 Cr~~P~~~~~~~ 95 (132)
T COG0727 84 CRTFPFVEERGT 95 (132)
T ss_pred heecceEEeccc
Confidence 999999887665
No 3
>PRK05170 hypothetical protein; Provisional
Probab=97.23 E-value=6.7e-05 Score=59.19 Aligned_cols=47 Identities=30% Similarity=0.584 Sum_probs=32.5
Q ss_pred CchhhhhhcCCCCCCCCcCCHHHhhcChhhHHhhhhhcCCCCccccccCCCCCCcccCCCCcc
Q 031342 59 RCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPYF 121 (161)
Q Consensus 59 ~C~~~CG~CC~~~~~~i~lt~~ei~~l~~~l~~y~~l~~~dg~C~FLd~~~~~CsIYe~RP~~ 121 (161)
-| .|||.||... +..+|- ..+.-.+..|.+||.++.+|++|+.|-..
T Consensus 23 LC-DgCG~CCl~K-----leDedt----------gei~~T~vaC~lLD~~T~~C~~Y~~R~~~ 69 (147)
T PRK05170 23 LC-DGCGKCCLHK-----LEDEDT----------GEIYYTNVACRLLDIKTCQCSDYENRFEF 69 (147)
T ss_pred Hh-hhhhHHhcee-----eeccCC----------CcEEEcceecccccCCCCCCCChhhhccc
Confidence 49 6999999853 222221 01122467999999888999999999653
No 4
>COG2983 Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.0098 Score=47.06 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.7
Q ss_pred ccccccCCCCCCcccCCCCc
Q 031342 101 WCINYEKSTRKCSIYPERPY 120 (161)
Q Consensus 101 ~C~FLd~~~~~CsIYe~RP~ 120 (161)
.|.+||.++.+|+.|+.|-.
T Consensus 54 aC~lLd~etcrC~~Y~~Rf~ 73 (153)
T COG2983 54 ACELLDPETCRCKDYENRFK 73 (153)
T ss_pred eeeecCccccccccHHhhhc
Confidence 79999988999999998854
No 5
>PF11307 DUF3109: Protein of unknown function (DUF3109); InterPro: IPR021458 This bacterial family of proteins has no known function.
Probab=91.63 E-value=0.098 Score=42.81 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=47.1
Q ss_pred CCCCCc-hhhh-hhcCCCCCCCCcCCHHHhhcChhhH---Hhhhh----------------hcC-------CCCcccccc
Q 031342 55 EPLWRC-VQGC-GACCKLDKGPDFATPEEIFDDPSDV---ELYRS----------------LIG-------PDGWCINYE 106 (161)
Q Consensus 55 ~~~f~C-~~~C-G~CC~~~~~~i~lt~~ei~~l~~~l---~~y~~----------------l~~-------~dg~C~FLd 106 (161)
...|.| +..| |+||-....--+|+.+|+..+.+.+ ..|++ ..+ ..+.|.|.-
T Consensus 15 ~~~F~CdL~~CkG~CCvEGd~GAPl~~~E~~~le~~~~~v~~~L~~~~~~~I~~qG~~~~d~~Gd~~T~~v~g~eCvf~~ 94 (183)
T PF11307_consen 15 EEKFVCDLSACKGACCVEGDAGAPLEEEEIAILEEIYPKVKPYLSPEGIAAIERQGVAYEDEDGDLVTPIVNGKECVFTC 94 (183)
T ss_pred hhcccCchhcCCCCCccCCCcCCCCCHHHHHHHHHHhHHHhhhcCHHHHHHHHHcCceEEecCCCEEeeeEcCCeeEEEE
Confidence 456777 2488 9999743333557888885544322 11210 001 234799985
Q ss_pred C-CCC--CCcccC---------CCCcccccCcchhhhh
Q 031342 107 K-STR--KCSIYP---------ERPYFCRVEPAVFLSL 132 (161)
Q Consensus 107 ~-~~~--~CsIYe---------~RP~~CR~fPf~~~~~ 132 (161)
- ++| .|.|-. .+|..|++||--....
T Consensus 95 ~~e~G~~~CaiE~Ay~~G~~~~~KPISChLYPIRv~~~ 132 (183)
T PF11307_consen 95 YDENGICLCAIEKAYREGKIDFKKPISCHLYPIRVKKY 132 (183)
T ss_pred EccCCEEEEHHHHHHHcCCCCCCCCceEeecceEEEee
Confidence 3 333 788754 7999999999544433
No 6
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=26.14 E-value=22 Score=19.51 Aligned_cols=9 Identities=78% Similarity=1.981 Sum_probs=7.1
Q ss_pred CCchhhhhhc
Q 031342 58 WRCVQGCGAC 67 (161)
Q Consensus 58 f~C~~~CG~C 67 (161)
-.|. ||++|
T Consensus 8 ~rCi-GC~~C 16 (22)
T PF12797_consen 8 ERCI-GCGAC 16 (22)
T ss_pred cccc-CchhH
Confidence 4686 99888
No 7
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=24.67 E-value=57 Score=26.26 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=28.0
Q ss_pred CcccCCCCCCccccccccccccCCCCCCchhhhhhcCCCCC
Q 031342 32 NTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKLDK 72 (161)
Q Consensus 32 ~~~~~~~~~~~~~~~~gf~~~~~~~~f~C~~~CG~CC~~~~ 72 (161)
-..++=|...++.+ -+|.+........|. +|+.|=.-=+
T Consensus 30 ~vT~~YP~e~~~~~-~rfRG~~~l~~~~CI-gC~lCa~iCP 68 (172)
T COG1143 30 PVTIEYPEEKIPLS-PRFRGRHVLDRDKCI-GCGLCANICP 68 (172)
T ss_pred CchhhCccccCCCC-CCccceeeccccCCc-chhHHHhhCC
Confidence 34444466665555 789888888888998 9999976443
No 8
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=19.57 E-value=36 Score=18.64 Aligned_cols=11 Identities=45% Similarity=1.534 Sum_probs=7.7
Q ss_pred CCchhhhhhcCC
Q 031342 58 WRCVQGCGACCK 69 (161)
Q Consensus 58 f~C~~~CG~CC~ 69 (161)
-.|. +||.|=.
T Consensus 7 ~~C~-~Cg~C~~ 17 (24)
T PF12837_consen 7 DKCI-GCGDCVR 17 (24)
T ss_pred hhCc-ChhHHHH
Confidence 3685 9998843
No 9
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=17.46 E-value=78 Score=25.25 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=24.4
Q ss_pred CCcccCCCCCCccccccccccccCCCCCCchhhhhhcCCC
Q 031342 31 PNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKL 70 (161)
Q Consensus 31 ~~~~~~~~~~~~~~~~~gf~~~~~~~~f~C~~~CG~CC~~ 70 (161)
+.|..| |+.. ....-||.+......-.|. +||.|=..
T Consensus 13 ~~T~~y-P~~~-~~~p~~~rG~~~~d~~~Ci-~Cg~Cv~a 49 (181)
T PRK08222 13 TATVKY-PFAP-LEVSPGFRGKPDLMPSQCI-ACGACTCA 49 (181)
T ss_pred CccccC-CCcc-cCCCCCccCceEeChhhCc-chhHHHHh
Confidence 455555 5554 5567778776666666896 99988554
No 10
>PF06446 Hepcidin: Hepcidin; InterPro: IPR010500 Hepcidin is a antibacterial and anti-fungal protein expressed in the liver and is also a signalling molecule in iron metabolism. The hepcidin protein is cysteine-rich and forms a distorted beta-sheet with an unusual disulphide bond found at the turn of the hairpin [].; GO: 0006879 cellular iron ion homeostasis, 0005576 extracellular region; PDB: 1M4E_A 2KEF_A 1M4F_A 3H0T_C 1S6W_A.
Probab=16.52 E-value=33 Score=22.93 Aligned_cols=7 Identities=71% Similarity=2.399 Sum_probs=3.0
Q ss_pred hhhhcCC
Q 031342 63 GCGACCK 69 (161)
Q Consensus 63 ~CG~CC~ 69 (161)
+||.||+
T Consensus 50 gCG~CC~ 56 (57)
T PF06446_consen 50 GCGVCCR 56 (57)
T ss_dssp SEEEEE-
T ss_pred CCCcccC
Confidence 4455553
Done!