Query 031342
Match_columns 161
No_of_seqs 141 out of 1068
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 20:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhs_C SAGA-associated factor 32.4 20 0.0007 25.6 1.8 49 16-65 28-77 (99)
2 2hm3_A Nematocyst outer WALL a 10.9 69 0.0024 17.9 0.4 9 59-67 7-16 (31)
3 1s6w_A Hepcidin; two strand an 9.5 65 0.0022 17.6 -0.0 8 63-70 14-21 (26)
4 1m4f_A Hepcidin; strand-loop-s 9.2 61 0.0021 17.7 -0.2 8 63-70 18-25 (26)
5 2lg4_A Aurelin; antimicrobial 10.8 83 0.0028 18.9 0.0 12 56-67 29-40 (40)
6 1iqz_A Ferredoxin; iron-sulfer 7.1 88 0.003 19.6 -0.2 15 57-72 8-22 (81)
7 1dax_A Ferredoxin I; electron 6.8 94 0.0032 18.3 -0.2 12 58-70 9-20 (64)
8 1dwl_A Ferredoxin I; electron 6.4 1.2E+02 0.0041 17.1 0.2 14 58-72 7-20 (59)
9 1sj1_A Ferredoxin; thermostabi 6.3 1E+02 0.0035 18.0 -0.2 12 58-70 9-20 (66)
10 1g1p_A Conotoxin EVIA; three d 6.2 2.2E+02 0.0074 16.0 1.2 12 47-58 7-18 (33)
No 1
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=32.41 E-value=20 Score=25.63 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=32.8
Q ss_pred hhhccchhhhhhcCCCCcccCCCCCCccccccccccc-cCCCCCCchhhhh
Q 031342 16 AAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIE-KMEPLWRCVQGCG 65 (161)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~-~~~~~f~C~~~CG 65 (161)
.++.+-+.++-..+.|+.|.|.-...+..+..|.... .....|.|+ .||
T Consensus 28 v~~e~~~~k~l~~r~p~~k~y~~~~~~~lDIfG~~~~~~~s~~~~C~-nC~ 77 (99)
T 3mhs_C 28 VARETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCE-NCG 77 (99)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCCCCTTSCSCTTSCCCCCTTSCEEECT-TTC
T ss_pred HHHHHHHHHHHhccCCCCCCceecCCCCcccCCCcCcccCCCeEECC-CCC
Confidence 4444555566677778888877777777788887555 445666885 665
No 2
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=10.87 E-value=69 Score=17.85 Aligned_cols=9 Identities=56% Similarity=1.686 Sum_probs=5.6
Q ss_pred Cchhhh-hhc
Q 031342 59 RCVQGC-GAC 67 (161)
Q Consensus 59 ~C~~~C-G~C 67 (161)
.|+.+| |.|
T Consensus 7 tcpsgcsgdc 16 (31)
T 2hm3_A 7 TCPSGCSGDC 16 (31)
T ss_dssp CCCTTCCGGG
T ss_pred cCCCCcCccc
Confidence 466677 555
No 3
>1s6w_A Hepcidin; two strand antiparalell beta sheet, antibiotic; NMR {Synthetic} SCOP: j.3.1.8
Probab=9.48 E-value=65 Score=17.62 Aligned_cols=8 Identities=63% Similarity=2.182 Sum_probs=6.6
Q ss_pred hhhhcCCC
Q 031342 63 GCGACCKL 70 (161)
Q Consensus 63 ~CG~CC~~ 70 (161)
+||.||+.
T Consensus 14 gCG~CC~f 21 (26)
T 1s6w_A 14 GCGVCCRF 21 (26)
T ss_dssp SCEEECCC
T ss_pred eecCcccc
Confidence 59999985
No 4
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=9.22 E-value=61 Score=17.71 Aligned_cols=8 Identities=63% Similarity=1.713 Sum_probs=6.1
Q ss_pred hhhhcCCC
Q 031342 63 GCGACCKL 70 (161)
Q Consensus 63 ~CG~CC~~ 70 (161)
+||.||+.
T Consensus 18 ~CG~cC~~ 25 (26)
T 1m4f_A 18 KCGMCCKT 25 (26)
T ss_dssp SEEEECCC
T ss_pred CcCCeeCC
Confidence 78888863
No 5
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=10.83 E-value=83 Score=18.88 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=9.7
Q ss_pred CCCCchhhhhhc
Q 031342 56 PLWRCVQGCGAC 67 (161)
Q Consensus 56 ~~f~C~~~CG~C 67 (161)
.+..|.+.||.|
T Consensus 29 ~r~~C~kTCG~C 40 (40)
T 2lg4_A 29 LRANCKKTCGLC 40 (40)
Confidence 466898899987
No 6
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=7.11 E-value=88 Score=19.62 Aligned_cols=15 Identities=33% Similarity=0.800 Sum_probs=10.2
Q ss_pred CCCchhhhhhcCCCCC
Q 031342 57 LWRCVQGCGACCKLDK 72 (161)
Q Consensus 57 ~f~C~~~CG~CC~~~~ 72 (161)
.-.|. +||.|=..-+
T Consensus 8 ~~~Ci-gCg~C~~~CP 22 (81)
T 1iqz_A 8 KETCI-ACGACGAAAP 22 (81)
T ss_dssp TTTCC-CCSHHHHHCT
T ss_pred cccCc-ccChhhHhCc
Confidence 34795 9999865443
No 7
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=6.78 E-value=94 Score=18.27 Aligned_cols=12 Identities=25% Similarity=1.044 Sum_probs=8.3
Q ss_pred CCchhhhhhcCCC
Q 031342 58 WRCVQGCGACCKL 70 (161)
Q Consensus 58 f~C~~~CG~CC~~ 70 (161)
-.|. +||.|=..
T Consensus 9 ~~C~-~Cg~C~~~ 20 (64)
T 1dax_A 9 DECI-ACESCVEI 20 (64)
T ss_dssp TTCC-SCCHHHHH
T ss_pred ccCC-CchHHHHh
Confidence 3685 88888543
No 8
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=6.35 E-value=1.2e+02 Score=17.14 Aligned_cols=14 Identities=36% Similarity=0.999 Sum_probs=9.3
Q ss_pred CCchhhhhhcCCCCC
Q 031342 58 WRCVQGCGACCKLDK 72 (161)
Q Consensus 58 f~C~~~CG~CC~~~~ 72 (161)
-.|. +||.|=..-+
T Consensus 7 ~~C~-~C~~C~~~Cp 20 (59)
T 1dwl_A 7 EECI-GCESCVELCP 20 (59)
T ss_dssp CCCS-SCCGGGGTST
T ss_pred hhCc-ChhHHHHHCC
Confidence 3585 9999865433
No 9
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=6.34 E-value=1e+02 Score=17.95 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=8.1
Q ss_pred CCchhhhhhcCCC
Q 031342 58 WRCVQGCGACCKL 70 (161)
Q Consensus 58 f~C~~~CG~CC~~ 70 (161)
-.|. +||.|=..
T Consensus 9 ~~C~-~C~~C~~~ 20 (66)
T 1sj1_A 9 DTCI-GDAICASL 20 (66)
T ss_dssp TTCC-CCCHHHHH
T ss_pred ccCc-CchHHHHh
Confidence 3585 88888543
No 10
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=6.25 E-value=2.2e+02 Score=15.99 Aligned_cols=12 Identities=17% Similarity=-0.070 Sum_probs=7.6
Q ss_pred cccccccCCCCC
Q 031342 47 VGFGIEKMEPLW 58 (161)
Q Consensus 47 ~gf~~~~~~~~f 58 (161)
+||-+.++...-
T Consensus 7 ygfcslpilkng 18 (33)
T 1g1p_A 7 YGFCSLPILKNG 18 (33)
T ss_dssp TSBCCCSSSSCC
T ss_pred ccceechhhcCC
Confidence 788766665443
Done!