Query 031342
Match_columns 161
No_of_seqs 141 out of 1068
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 20:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031342.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031342hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlqa2 g.37.1.1 (A:35-62) GLI 35.6 5 0.00036 20.9 0.5 12 57-69 1-12 (28)
2 d1nekb1 a.1.2.1 (B:107-238) Su 19.4 25 0.0018 23.2 2.0 16 53-69 36-51 (132)
3 d1rk8c_ b.72.3.1 (C:) Pym (Wit 11.9 11 0.00081 20.3 -1.3 19 11-29 7-28 (33)
4 d2dmda3 g.37.1.1 (A:62-90) Zin 10.6 40 0.0029 17.4 0.8 12 117-128 1-12 (29)
5 d1bhia_ g.37.1.1 (A:) Transact 9.7 46 0.0034 18.4 0.8 12 116-127 3-14 (38)
6 d2c42a5 d.58.1.5 (A:669-785) P 9.3 32 0.0023 22.2 0.0 13 57-70 74-86 (117)
7 d1iqza_ d.58.1.4 (A:) Ferredox 8.6 32 0.0024 20.9 -0.2 15 57-72 8-22 (81)
8 d1fxda_ d.58.1.4 (A:) Ferredox 7.5 38 0.0028 19.3 -0.2 13 59-72 7-19 (58)
9 d2bs2b1 a.1.2.1 (B:107-239) Fu 7.3 35 0.0026 22.3 -0.5 11 56-67 98-108 (133)
10 d2dsxa1 g.41.5.1 (A:1-52) Rubr 7.1 1.2E+02 0.0086 17.4 2.0 15 51-66 30-44 (52)
No 1
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.57 E-value=5 Score=20.91 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=9.3
Q ss_pred CCCchhhhhhcCC
Q 031342 57 LWRCVQGCGACCK 69 (161)
Q Consensus 57 ~f~C~~~CG~CC~ 69 (161)
.|.|. .||.|=.
T Consensus 1 pf~c~-kcgkcyf 12 (28)
T d2dlqa2 1 PFECP-KCGKCYF 12 (28)
T ss_dssp SCBCT-TTCCBCS
T ss_pred CCccc-cchhhhh
Confidence 47895 9999864
No 2
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=19.36 E-value=25 Score=23.20 Aligned_cols=16 Identities=31% Similarity=1.041 Sum_probs=11.4
Q ss_pred cCCCCCCchhhhhhcCC
Q 031342 53 KMEPLWRCVQGCGACCK 69 (161)
Q Consensus 53 ~~~~~f~C~~~CG~CC~ 69 (161)
.......|. .||.|=.
T Consensus 36 ~~~~~~~CI-~CG~C~~ 51 (132)
T d1nekb1 36 KLDGLYECI-LCACCST 51 (132)
T ss_dssp TTTTTSCCC-CCCHHHH
T ss_pred HHHhhHHHh-Hhhhhhh
Confidence 344566997 9999854
No 3
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.93 E-value=11 Score=20.34 Aligned_cols=19 Identities=32% Similarity=0.677 Sum_probs=13.8
Q ss_pred chhhhhhhccch---hhhhhcC
Q 031342 11 NTVVLAAQQRPQ---RRAKKLK 29 (161)
Q Consensus 11 ~~~~~~~~~~~~---~~~~~~~ 29 (161)
+-..|+|.|||. +|+.+||
T Consensus 7 ~G~~i~atqRpDGtWRK~rrvk 28 (33)
T d1rk8c_ 7 EGKFIPATKRPDGTWRKARRVK 28 (33)
T ss_dssp TEEEECCEECTTSCEECCEECC
T ss_pred CCcEeccccCCCCccccceecc
Confidence 345789999997 5666665
No 4
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.63 E-value=40 Score=17.36 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=9.3
Q ss_pred CCCcccccCcch
Q 031342 117 ERPYFCRVEPAV 128 (161)
Q Consensus 117 ~RP~~CR~fPf~ 128 (161)
.||+.|.+-++.
T Consensus 1 erpfkcqlcsy~ 12 (29)
T d2dmda3 1 ERPFKCQICPYA 12 (29)
T ss_dssp CCCEECSSSSCE
T ss_pred CCcceeeecccc
Confidence 489999987753
No 5
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.70 E-value=46 Score=18.37 Aligned_cols=12 Identities=17% Similarity=0.811 Sum_probs=9.8
Q ss_pred CCCCcccccCcc
Q 031342 116 PERPYFCRVEPA 127 (161)
Q Consensus 116 e~RP~~CR~fPf 127 (161)
+.||+.|...+.
T Consensus 3 ddkPF~C~~pGC 14 (38)
T d1bhia_ 3 DDKPFLCTAPGC 14 (38)
T ss_dssp TCCCEECCCTTT
T ss_pred CCCceecCCCCc
Confidence 479999998773
No 6
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Probab=9.30 E-value=32 Score=22.16 Aligned_cols=13 Identities=38% Similarity=1.293 Sum_probs=9.5
Q ss_pred CCCchhhhhhcCCC
Q 031342 57 LWRCVQGCGACCKL 70 (161)
Q Consensus 57 ~f~C~~~CG~CC~~ 70 (161)
...|+ +||.|=..
T Consensus 74 ~~~C~-~CG~C~~~ 86 (117)
T d2c42a5 74 TLDCM-GCGNCADI 86 (117)
T ss_dssp TTTCC-CCCHHHHH
T ss_pred cccCC-ccCchhhh
Confidence 34697 99999543
No 7
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}
Probab=8.60 E-value=32 Score=20.94 Aligned_cols=15 Identities=33% Similarity=0.800 Sum_probs=11.2
Q ss_pred CCCchhhhhhcCCCCC
Q 031342 57 LWRCVQGCGACCKLDK 72 (161)
Q Consensus 57 ~f~C~~~CG~CC~~~~ 72 (161)
.-.|. +||.|=...+
T Consensus 8 ~~~Ci-gCg~C~~~cP 22 (81)
T d1iqza_ 8 KETCI-ACGACGAAAP 22 (81)
T ss_dssp TTTCC-CCSHHHHHCT
T ss_pred HHHCc-CcChHhHhCc
Confidence 45796 9999976554
No 8
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}
Probab=7.54 E-value=38 Score=19.25 Aligned_cols=13 Identities=31% Similarity=0.976 Sum_probs=9.8
Q ss_pred CchhhhhhcCCCCC
Q 031342 59 RCVQGCGACCKLDK 72 (161)
Q Consensus 59 ~C~~~CG~CC~~~~ 72 (161)
.|. +||.|=..-+
T Consensus 7 ~Ci-gCg~C~~~CP 19 (58)
T d1fxda_ 7 DCM-ACEACVEICP 19 (58)
T ss_dssp TCC-CCCHHHHHCT
T ss_pred cCc-ChhhHHHHcC
Confidence 686 9999877554
No 9
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=7.29 E-value=35 Score=22.28 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=8.9
Q ss_pred CCCCchhhhhhc
Q 031342 56 PLWRCVQGCGAC 67 (161)
Q Consensus 56 ~~f~C~~~CG~C 67 (161)
..+.|+ +||.|
T Consensus 98 ~~~~Ct-~Cg~C 108 (133)
T d2bs2b1 98 GVFGCM-TLLAC 108 (133)
T ss_dssp TGGGCC-CCCHH
T ss_pred cchhCh-hhCCC
Confidence 346897 99999
No 10
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=7.12 E-value=1.2e+02 Score=17.44 Aligned_cols=15 Identities=40% Similarity=0.959 Sum_probs=10.2
Q ss_pred cccCCCCCCchhhhhh
Q 031342 51 IEKMEPLWRCVQGCGA 66 (161)
Q Consensus 51 ~~~~~~~f~C~~~CG~ 66 (161)
=+.....|.|+ .||+
T Consensus 30 F~~LP~~w~CP-~C~a 44 (52)
T d2dsxa1 30 FEDLPDDWACP-VCGA 44 (52)
T ss_dssp GGGSCTTCBCT-TTCC
T ss_pred HHHCCCCCCCc-CCCC
Confidence 34445789996 8874
Done!