BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031343
MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA
EGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATE
FHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLYA

High Scoring Gene Products

Symbol, full name Information P value
MLP423
MLP-like protein 423 		protein from Arabidopsis thaliana 2.7e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031343
        (161 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2199932 - symbol:MLP423 "MLP-like protein 423"...   110  2.7e-06   1


>TAIR|locus:2199932 [details] [associations]
            symbol:MLP423 "MLP-like protein 423" species:3702
            "Arabidopsis thaliana" [GO:0006952 "defense response" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0016020 "membrane"
            evidence=IDA] [GO:0016556 "mRNA modification" evidence=RCA]
            InterPro:IPR000916 Pfam:PF00407 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006952 GO:GO:0016020 GO:GO:0009607
            Gene3D:3.30.530.20 InterPro:IPR023393 EMBL:AC002423
            HOGENOM:HOG000239987 InterPro:IPR024948 SMART:SM01037 EMBL:AJ306136
            EMBL:AY052277 EMBL:AY061912 EMBL:AY088360 IPI:IPI00542532
            RefSeq:NP_001185075.1 RefSeq:NP_173813.1 UniGene:At.25399
            UniGene:At.51746 UniGene:At.74164 ProteinModelPortal:Q93VR4
            SMR:Q93VR4 STRING:Q93VR4 PaxDb:Q93VR4 PRIDE:Q93VR4 ProMEX:Q93VR4
            EnsemblPlants:AT1G24020.1 EnsemblPlants:AT1G24020.2 GeneID:839014
            KEGG:ath:AT1G24020 TAIR:At1g24020 eggNOG:NOG277848
            InParanoid:Q93VR4 OMA:TYGEGSP PhylomeDB:Q93VR4
            ProtClustDB:CLSN2682365 Genevestigator:Q93VR4 GermOnline:AT1G24020
            InterPro:IPR024949 PRINTS:PR00634 Uniprot:Q93VR4
        Length = 155

 Score = 110 (43.8 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 38/142 (26%), Positives = 68/142 (47%)

Query:    15 APSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEA-GSVKIMYFAEGNKHT-YAKQRI 72
             +P+  F   + D  NLFP+ FP  +K++    GDG A GS++++ + EG+     + +RI
Sbjct:    15 SPAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYGEGSPLVKISAERI 74

Query:    73 DVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLE 132
             + +D E      ++   + ML+  ++    I      DGG+  K + EF  K   E    
Sbjct:    75 EAVDLENKSMSYSIIGGE-MLEYYKTFKGTITVIPK-DGGSLLKWSGEFE-KTAHEIDDP 131

Query:   133 EELKGSVELGTALFKAVEAHLL 154
               +K   +     FK ++ +LL
Sbjct:   132 HVIK---DFAVKNFKEIDEYLL 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       161   0.00074  107 3  11 22  0.39    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  130 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.63u 0.13s 15.76t   Elapsed:  00:00:01
  Total cpu time:  15.63u 0.13s 15.76t   Elapsed:  00:00:01
  Start:  Fri May 10 22:21:38 2013   End:  Fri May 10 22:21:39 2013

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