BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031343
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 126 bits (316), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + P R+FKAF+LD+ NL P++ PQA K +GDG G++K + F E
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G+++ Y K +ID +DKE + T+ E D + D LE I YE K AS GG+ K+ + +
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KG+ E K EE +K E + LFK +E +L +PD Y
Sbjct: 121 HTKGNVEIK-EEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + P R+FKAF+LD+ NL P++ PQA K GDG G++K + F E
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G+++ Y K +ID +DKE + T+ E D + D LE I YE K AS GG+ K+ + +
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KG+ E K EE +K E + LFK +E +L +PD Y
Sbjct: 121 HTKGNVEIK-EEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + +R+FKAFILD NLFP++ PQA SV +G+G G++K + F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G Y K R+D +D F +V E + D LE I EIK A+ DGG+ K + ++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KGD E K E++K S ELG L +AVE++LLA+ D Y
Sbjct: 121 HTKGDHEVKA-EQVKASKELGETLLRAVESYLLAHSDAY 158
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + +R+FKAFILD LFP++ PQA SV G+G G++K + F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G Y K R+D +D F +V E + D LE I EIK A+GDGG+ K + ++
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KGD E K E++K S E+G L +AVE++LLA+ D Y
Sbjct: 121 HTKGDHEVK-AEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + +R+FKAFILD NLFP++ PQA SV +G+G G++K + F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G Y K R+D +D F +V E + D LE I EIK A+ DGG+ K + ++
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KGD E K E++K S E+G L +AVE++LLA+ D Y
Sbjct: 121 HTKGDHEVK-AEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + +R+FKAFILD NLFP++ PQA SV +G+G G++K + F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G Y K R+D +D F +V E + D LE I EIK A+ DGG+ K + ++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KGD E K E++K S E+G L +AVE++LLA+ D Y
Sbjct: 121 HTKGDHEVKA-EQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + +R+FKAFILD NLFP++ PQA SV G+G G++K + F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G Y K R+D +D F +V E + D LE I EIK A+ DGG+ K + ++
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KGD E K E++K S E+G L +AVE++LLA+ D Y
Sbjct: 121 HTKGDHEVK-AEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + +R+FKAFILD NLFP++ PQA SV +G+G G++K + F E
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G Y K R+D +D F +V E + D LE I EIK A+ +GG+ K ++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KGD E K E++K S E+G L +AVE++LLA+ D Y
Sbjct: 121 HTKGDHEVKA-EQIKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + +R+FKAFILD NL P++ PQA SV +G+G G++K + F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G Y K R+D +D F +V E + D LE I EIK A+ DGG+ K + ++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KGD E K E++K S E+G L +AVE++LLA+ D Y
Sbjct: 121 HTKGDHEVKA-EQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV ++ + ++ + +RMFKAFILD L P++ PQA SV +G+G G++K + F E
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G Y K R+D +D F +V E + D LE I EIK A+ DGG K + ++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
H KG+ E K E++K S E+G L +AVE++LLA+ D Y
Sbjct: 121 HTKGNHEVKA-EQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
Query: 1 MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA 60
MGV ++ + ++ + ++FKAF+LD+ NL P++ PQA K +GDG G++K + F
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61 EGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATE 120
EG+ + Y K +I +DK ++ E D + + +E I YE K ++ GGT KT ++
Sbjct: 61 EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSK 120
Query: 121 FHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160
+H KGD E K EE +K E LFK +E +L +P Y
Sbjct: 121 YHTKGDVEIK-EEHVKAGKEKAAHLFKLIEGYLKDHPSEY 159
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Query: 1 MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA 60
M K+ + +AP R+FKA +L+ H + + P FKS +GDG G+V + F
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61 EGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATE 120
+G+ TY + D +D FYCK T+FE D + D +E +VYE+K EA G GG+ K
Sbjct: 67 DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVT 125
Query: 121 FHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLYA 161
+H K G + EEE+K + +K VE +L ANP+++A
Sbjct: 126 YHPK-PGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 1 MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA 60
MGV + +++V+ ++F+ F++D + P+ P A+KSV +GDG G++KI+
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 61 EGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATE 120
+G T RID ++KE +V + D +L +ESI + + DGG+ CKT
Sbjct: 60 DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI 119
Query: 121 FHIKGDGESKLEEELKGSVELGTALFKAVEAHLLAN 156
FH KGD EE +K + E TALFKA+EA+L+AN
Sbjct: 120 FHTKGDAVVP-EENIKYANEQNTALFKALEAYLIAN 154
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 1 MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA 60
MG + +++V+ ++F +LD + P+ A+KSV +GDG AG+V+I+
Sbjct: 1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 61 EGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATE 120
EG+ T R D ++KE STV + D +L +ESI + + DGG+ KT
Sbjct: 60 EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAI 119
Query: 121 FHIKGDGESKLEEELKGSVELGTALFKAVEAHLLAN 156
FH KGD EE +K + TALFKA+EA+L+AN
Sbjct: 120 FHTKGDAVVP-EENIKFADAQNTALFKAIEAYLIAN 154
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 5/158 (3%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV F+ + +AVA +++FKA DS ++ P++ Q +SV +G+G G+VK + +
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G +Y +ID +D+ F ++ + + LE I +E K + DGG+ K +F
Sbjct: 60 GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKF 119
Query: 122 HIKGDGES-KLEEELKGSVELGTALFKAVEAHLLANPD 158
H KGD S + EE K GT LFKAVE ++LANP+
Sbjct: 120 HTKGDVLSDAVREEAKAR---GTGLFKAVEGYVLANPN 154
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV F+ + ++ VAP+ ++KA + D+ N+ P+ +FKSV +G+G G++K + F E
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLE 59
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
+ + +I+ +D+ +V + D E I ++ K A +GG+ K ++
Sbjct: 60 DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKY 119
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPD 158
KGD E ++ELK ALFKA+EA+LLA+PD
Sbjct: 120 ETKGDAEPN-QDELKTGKAKADALFKAIEAYLLAHPD 155
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 1 MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA 60
MGV F + ++ +AP++++KA + D+ + P+ + +SV +G+G G++K + F
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 61 EGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATE 120
EG + Y +I+ +D+ ++ + D +E I +E K +GG+ K +
Sbjct: 60 EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119
Query: 121 FHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPD 158
KGD + EEE K + G A FKA+E++L A+PD
Sbjct: 120 IETKGDAQPN-EEEGKAAKARGDAFFKAIESYLSAHPD 156
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV F+ + ++ +AP+R++KA + D+ + P+ +A +S+ +G+G G++K + E
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G + Y +I+ +D+ ++ + D +E I +E K +GG+ K +
Sbjct: 60 GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
Query: 122 HIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPD 158
KGD + EEE K + G A FKA+E +L A+P+
Sbjct: 120 ETKGDAQPN-EEEGKAAKARGDAFFKAIENYLSAHPE 155
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
G+ F+ + S+ VAP++++KA DS + P++ + +SV +G+G G++K +
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
++ ++D +D+ ++ + + + LE I YE K DGG+ K +F
Sbjct: 60 DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119
Query: 122 HIKGDGESKLEEELKGSVEL-GTALFKAVEAHLLANPD 158
H KGD L E ++ + G LFKA+E ++LA+PD
Sbjct: 120 HTKGD---VLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Query: 2 GVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE 61
GV F + S++VAP++++KA DS + ++ +S+ +G+G G++K + E
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGGVGTIKKITANE 59
Query: 62 GNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEF 121
G+K ++ Q++D +D+ ++ + + LE + +E K A GG+ K +F
Sbjct: 60 GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119
Query: 122 HIKGDGESKLEEELK-GSVELGTALFKAVEAHLLANPDLY 160
H KGD + L + ++ ++ G FKA+E ++LANP Y
Sbjct: 120 HTKGD--APLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Query: 1 MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA 60
MGV+ + + ++++ ++++ + D + ++P+ P+ + +GDG G++K + F
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 61 EGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLD-ILESIVYEIKFEASGDGGTNCKTAT 119
T KQ ID++D+E +V+E + D LE IV+E K + + G K+ T
Sbjct: 66 GDFGST--KQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTT 123
Query: 120 EFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPD 158
+++ KGD ++ L+ +E KAVE+ LLANPD
Sbjct: 124 KYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANPD 162
>pdb|1Z94|A Chain A, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr12.
pdb|1Z94|B Chain B, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr12.
pdb|1Z94|C Chain C, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr12.
pdb|1Z94|D Chain D, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr12.
pdb|1Z94|E Chain E, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr12.
pdb|1Z94|F Chain F, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr12
Length = 147
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 13 AVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVK--IMYFAEGNKHTYAKQ 70
+ P R+++AF LD L L P+ F V E G+ K + FA G KH + +
Sbjct: 12 SAPPERVYRAF-LDPLALAKWLPPEGFVCKVLEHDARVGGAYKXEFLAFASGQKHAFGGR 70
Query: 71 RIDVLDKEKF 80
++++ E+
Sbjct: 71 YLELVPGERI 80
>pdb|1H31|B Chain B, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|D Chain D, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|F Chain F, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|H Chain H, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H32|B Chain B, Reduced Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H33|B Chain B, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|2OZ1|B Chain B, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|D Chain D, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|F Chain F, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|H Chain H, The Soxax Complex Of Rhodovulum Sulfidophilum
Length = 138
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 DGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSV 42
DG AA P M + +++S N+FPE A+ V
Sbjct: 65 DGVAARYPEAMIRGILVNSKNVFPETVMPAYYRV 98
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 29.6 bits (65), Expect = 0.86, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1 MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQ 46
+GV F D S +AP + KA + HNL FP+ K +Y++
Sbjct: 189 IGVAGFRIDASKHMAPGDI-KAILDKLHNLNSNWFPEGSKPFIYQE 233
>pdb|1LBV|A Chain A, Crystal Structure Of Apo-Form (P21) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBV|B Chain B, Crystal Structure Of Apo-Form (P21) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBW|A Chain A, Crystal Structure Of Apo-Form (P32) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBW|B Chain B, Crystal Structure Of Apo-Form (P32) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBX|A Chain A, Crystal Structure Of A Ternary Complex Of Dual Activity
Fbpase/impase (af2372) From Archaeoglobus Fulgidus With
Calcium Ions And D-myo-inositol-1-phosphate
pdb|1LBX|B Chain B, Crystal Structure Of A Ternary Complex Of Dual Activity
Fbpase/impase (af2372) From Archaeoglobus Fulgidus With
Calcium Ions And D-myo-inositol-1-phosphate
pdb|1LBY|A Chain A, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Manganese Ions, Fructose-6-phosphate,
And Phosphate Ion
pdb|1LBY|B Chain B, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Manganese Ions, Fructose-6-phosphate,
And Phosphate Ion
pdb|1LBZ|A Chain A, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Calcium Ions And Fructose-1,6
Bisphosphate
pdb|1LBZ|B Chain B, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Calcium Ions And Fructose-1,6
Bisphosphate
Length = 252
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 38 AFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFEEDN-----M 92
AF VY G+ Y+A+ + +RI+V D E+ YC + ++ D
Sbjct: 112 AFFGYVYNLATGDE------YYADSSGAYRNGERIEVSDAEELYCNAIIYYPDRKFPFKR 165
Query: 93 LDILESIVYEIKFEASGDGGTNC 115
+ I S E+ F A DG +C
Sbjct: 166 MRIFGSAATELCFFA--DGSFDC 186
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 36 PQAFKSVVYEQ---GDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNM 92
PQ +K V GD E GS++ + G T + +R+++LD E+ + D+
Sbjct: 77 PQKYKPFVSRCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHR 136
Query: 93 LDILESIV 100
L SI+
Sbjct: 137 LKNYSSIL 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,019,432
Number of Sequences: 62578
Number of extensions: 211285
Number of successful extensions: 531
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 38
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)