Query 031343
Match_columns 161
No_of_seqs 107 out of 808
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.1E-44 2.4E-49 273.4 19.2 150 1-156 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 8.5E-37 1.8E-41 229.2 19.8 146 4-155 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1E-17 2.2E-22 121.0 17.4 138 5-153 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 3.3E-14 7.1E-19 102.6 19.0 107 4-123 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 1.5E-13 3.2E-18 100.7 16.9 135 7-153 2-142 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.5 2.2E-12 4.7E-17 94.3 15.6 113 6-127 1-114 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.5 9.7E-12 2.1E-16 89.9 17.7 113 4-126 2-115 (140)
8 cd08865 SRPBCC_10 Ligand-bindi 99.5 6.3E-12 1.4E-16 90.3 16.4 107 6-123 1-108 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.4 6.2E-12 1.3E-16 91.9 13.1 135 6-154 1-136 (138)
10 cd07822 SRPBCC_4 Ligand-bindin 99.4 3.8E-11 8.3E-16 86.4 16.6 110 6-124 2-112 (141)
11 cd08862 SRPBCC_Smu440-like Lig 99.4 7.5E-11 1.6E-15 85.2 16.4 107 5-124 2-108 (138)
12 cd07812 SRPBCC START/RHO_alpha 99.4 7.5E-11 1.6E-15 82.5 15.7 135 7-151 2-139 (141)
13 cd07825 SRPBCC_7 Ligand-bindin 99.3 1.6E-10 3.5E-15 84.5 14.4 139 6-153 2-143 (144)
14 cd07814 SRPBCC_CalC_Aha1-like 99.3 3E-10 6.6E-15 81.9 14.0 136 6-153 2-137 (139)
15 cd05018 CoxG Carbon monoxide d 99.2 2E-09 4.2E-14 78.1 15.6 112 5-126 2-115 (144)
16 cd07817 SRPBCC_8 Ligand-bindin 99.2 1.2E-09 2.7E-14 78.9 14.1 108 5-126 1-108 (139)
17 cd07818 SRPBCC_1 Ligand-bindin 99.2 2.8E-09 6E-14 78.5 16.0 113 4-126 2-119 (150)
18 cd07820 SRPBCC_3 Ligand-bindin 99.2 7.1E-10 1.5E-14 81.3 12.7 108 6-124 1-112 (137)
19 cd08860 TcmN_ARO-CYC_like N-te 99.2 3.6E-09 7.8E-14 79.2 16.5 114 5-128 2-117 (146)
20 PF03364 Polyketide_cyc: Polyk 99.1 5.4E-09 1.2E-13 75.2 15.0 106 12-129 1-109 (130)
21 cd07824 SRPBCC_6 Ligand-bindin 99.1 8.7E-09 1.9E-13 76.2 15.7 109 5-125 2-113 (146)
22 cd07823 SRPBCC_5 Ligand-bindin 99.1 1.2E-08 2.5E-13 75.5 14.8 140 6-152 1-143 (146)
23 PRK10724 hypothetical protein; 99.0 4.9E-08 1.1E-12 74.2 14.5 111 4-125 15-125 (158)
24 COG3427 Carbon monoxide dehydr 98.8 1.7E-07 3.7E-12 70.2 13.6 139 6-155 3-145 (146)
25 PF06240 COXG: Carbon monoxide 98.7 1.6E-06 3.6E-11 64.0 15.1 136 9-153 2-139 (140)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.6 2.6E-06 5.7E-11 63.9 12.8 130 3-157 10-139 (157)
27 cd08898 SRPBCC_CalC_Aha1-like_ 98.5 3E-06 6.4E-11 61.6 11.9 138 5-154 2-144 (145)
28 cd08900 SRPBCC_CalC_Aha1-like_ 98.5 2.2E-05 4.7E-10 57.7 16.0 137 6-154 2-142 (143)
29 cd07826 SRPBCC_CalC_Aha1-like_ 98.4 1.7E-05 3.6E-10 58.5 13.4 138 6-154 2-141 (142)
30 cd08893 SRPBCC_CalC_Aha1-like_ 98.4 1.8E-05 4E-10 56.7 13.1 133 5-153 1-134 (136)
31 cd08896 SRPBCC_CalC_Aha1-like_ 98.3 6.2E-05 1.3E-09 55.5 15.4 139 6-154 2-145 (146)
32 COG5637 Predicted integral mem 98.3 4.5E-06 9.8E-11 64.5 9.2 111 3-126 69-179 (217)
33 cd08895 SRPBCC_CalC_Aha1-like_ 98.3 0.00011 2.4E-09 54.2 16.4 136 5-154 1-145 (146)
34 cd08876 START_1 Uncharacterize 98.2 0.00029 6.3E-09 54.2 17.6 144 4-153 41-194 (195)
35 cd08894 SRPBCC_CalC_Aha1-like_ 98.2 9.2E-05 2E-09 54.2 13.7 135 6-154 2-138 (139)
36 cd08897 SRPBCC_CalC_Aha1-like_ 98.2 9.4E-05 2E-09 53.7 13.1 128 5-154 1-132 (133)
37 PF08327 AHSA1: Activator of H 98.0 0.00034 7.5E-09 49.3 12.2 122 13-153 1-123 (124)
38 cd08891 SRPBCC_CalC Ligand-bin 97.9 0.00067 1.5E-08 50.1 14.0 136 6-153 2-147 (149)
39 COG3832 Uncharacterized conser 97.8 0.0018 3.9E-08 48.4 14.2 140 3-154 7-148 (149)
40 COG2867 Oligoketide cyclase/li 97.7 0.00033 7.1E-09 52.5 8.5 112 5-126 3-114 (146)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.6 0.0021 4.5E-08 46.9 11.7 129 6-156 2-133 (136)
42 cd08892 SRPBCC_Aha1 Putative h 97.5 0.0067 1.4E-07 43.7 13.5 100 6-123 2-101 (126)
43 cd08873 START_STARD14_15-like 97.3 0.037 8E-07 44.8 15.9 146 4-156 77-235 (235)
44 PTZ00220 Activator of HSP-90 A 97.2 0.0052 1.1E-07 44.9 9.9 120 12-153 1-126 (132)
45 cd08874 START_STARD9-like C-te 96.6 0.24 5.2E-06 39.2 15.8 122 6-130 47-182 (205)
46 PF08982 DUF1857: Domain of un 96.3 0.26 5.6E-06 37.1 13.0 90 15-124 19-108 (149)
47 cd08868 START_STARD1_3_like Ch 96.1 0.46 9.9E-06 37.1 15.5 145 6-155 50-207 (208)
48 cd08905 START_STARD1-like Chol 96.1 0.47 1E-05 37.3 14.5 144 5-154 50-207 (209)
49 cd00177 START Lipid-binding ST 96.1 0.39 8.4E-06 35.9 16.8 143 4-151 39-190 (193)
50 cd08863 SRPBCC_DUF1857 DUF1857 96.0 0.45 9.7E-06 35.6 15.8 113 15-149 18-131 (141)
51 cd08913 START_STARD14-like Lip 95.7 0.9 2E-05 36.8 14.8 144 5-155 82-239 (240)
52 cd08914 START_STARD15-like Lip 95.3 1.2 2.6E-05 36.1 14.4 145 4-154 78-234 (236)
53 cd08903 START_STARD5-like Lipi 95.2 1.2 2.6E-05 35.0 15.9 144 6-154 48-206 (208)
54 PF10698 DUF2505: Protein of u 95.2 0.98 2.1E-05 33.9 14.0 135 6-152 1-154 (159)
55 cd08911 START_STARD7-like Lipi 95.0 1.4 3E-05 34.6 14.0 144 4-154 45-205 (207)
56 cd08906 START_STARD3-like Chol 94.9 1.4 3.1E-05 34.7 16.3 143 5-154 50-207 (209)
57 cd08871 START_STARD10-like Lip 94.8 1.5 3.3E-05 34.4 16.3 144 5-155 48-202 (222)
58 cd08877 START_2 Uncharacterize 94.8 1.5 3.3E-05 34.3 13.9 147 3-154 45-213 (215)
59 cd08870 START_STARD2_7-like Li 94.7 1.6 3.4E-05 34.2 16.0 145 4-154 50-207 (209)
60 smart00234 START in StAR and p 92.3 4 8.7E-05 31.2 17.0 147 4-155 45-202 (206)
61 cd08867 START_STARD4_5_6-like 89.1 8.9 0.00019 29.7 15.2 143 6-153 48-205 (206)
62 cd08869 START_RhoGAP C-termina 87.6 11 0.00025 29.1 15.6 118 5-127 45-171 (197)
63 COG4276 Uncharacterized conser 85.3 14 0.00029 27.7 14.9 138 4-153 2-146 (153)
64 cd08872 START_STARD11-like Cer 83.5 21 0.00046 28.6 14.1 143 5-156 53-227 (235)
65 PF01852 START: START domain; 77.6 28 0.00061 26.3 17.6 147 3-157 45-204 (206)
66 cd08910 START_STARD2-like Lipi 75.5 37 0.00079 26.5 14.8 141 4-154 49-205 (207)
67 cd08908 START_STARD12-like C-t 62.8 74 0.0016 25.1 12.2 116 4-127 52-178 (204)
68 PF11687 DUF3284: Domain of un 54.1 66 0.0014 22.9 6.3 102 7-125 2-104 (120)
69 PRK06628 lipid A biosynthesis 53.6 25 0.00054 28.8 4.5 44 116-160 238-281 (290)
70 KOG3177 Oligoketide cyclase/li 50.1 96 0.0021 24.9 7.0 105 10-125 74-182 (227)
71 PF11485 DUF3211: Protein of u 47.0 1.2E+02 0.0025 22.6 8.6 124 6-152 3-126 (136)
72 PRK06553 lipid A biosynthesis 45.5 36 0.00078 28.1 4.3 44 116-160 257-300 (308)
73 TIGR02208 lipid_A_msbB lipid A 42.3 45 0.00097 27.4 4.4 40 116-160 248-287 (305)
74 PF02087 Nitrophorin: Nitropho 42.2 1.5E+02 0.0032 23.0 6.7 24 67-90 49-72 (178)
75 KOG0301 Phospholipase A2-activ 39.1 1.5E+02 0.0032 27.9 7.3 78 4-90 147-231 (745)
76 cd00222 CollagenBindB Collagen 38.0 62 0.0013 25.3 4.3 72 12-91 3-74 (187)
77 PRK05645 lipid A biosynthesis 37.9 58 0.0013 26.6 4.4 40 116-160 238-277 (295)
78 KOG2445 Nuclear pore complex c 37.0 91 0.002 26.6 5.3 17 106-122 304-320 (361)
79 PRK08419 lipid A biosynthesis 33.9 83 0.0018 25.7 4.7 23 138-160 259-281 (298)
80 PRK08733 lipid A biosynthesis 32.7 78 0.0017 26.1 4.3 40 116-160 248-287 (306)
81 PRK06860 lipid A biosynthesis 32.7 77 0.0017 26.1 4.3 40 116-160 251-290 (309)
82 PRK08706 lipid A biosynthesis 31.9 74 0.0016 25.9 4.1 40 116-160 232-271 (289)
83 PRK08943 lipid A biosynthesis 30.7 88 0.0019 25.9 4.3 40 116-160 257-296 (314)
84 TIGR02207 lipid_A_htrB lipid A 30.6 88 0.0019 25.6 4.3 40 116-160 245-284 (303)
85 PF02021 UPF0102: Uncharacteri 30.5 1.6E+02 0.0036 19.9 5.0 66 83-157 14-79 (93)
86 PRK08734 lipid A biosynthesis 30.5 86 0.0019 25.8 4.3 40 116-160 239-278 (305)
87 PF00028 Cadherin: Cadherin do 29.8 1.4E+02 0.0031 19.2 4.6 12 97-108 65-76 (93)
88 PF02115 Rho_GDI: RHO protein 29.5 2.8E+02 0.0062 21.9 10.5 60 61-123 134-197 (200)
89 PF15650 Tox-REase-9: Restrict 28.8 48 0.001 22.8 2.0 29 51-87 25-53 (89)
90 PF03279 Lip_A_acyltrans: Bact 27.7 2.1E+02 0.0046 23.0 6.1 41 115-160 246-286 (295)
91 cd07984 LPLAT_LABLAT-like Lyso 26.7 1.3E+02 0.0028 22.3 4.3 22 139-160 163-184 (192)
92 PRK05646 lipid A biosynthesis 26.3 1.1E+02 0.0023 25.2 4.1 40 116-160 249-288 (310)
93 PF07474 G2F: G2F domain; Int 26.2 1.2E+02 0.0026 23.8 4.1 39 52-91 86-127 (192)
94 PRK14681 hypothetical protein; 25.7 2.6E+02 0.0057 21.2 5.8 69 82-158 60-128 (158)
95 PF03000 NPH3: NPH3 family; I 25.3 51 0.0011 27.0 2.0 17 143-159 220-236 (258)
96 PRK14680 hypothetical protein; 24.3 2.6E+02 0.0057 20.5 5.5 68 82-158 23-90 (134)
97 cd02853 MTHase_N_term Maltooli 24.3 2.1E+02 0.0045 18.6 4.6 60 31-99 12-71 (85)
98 PRK06946 lipid A biosynthesis 23.9 1.4E+02 0.003 24.4 4.3 22 139-160 254-275 (293)
99 PRK12497 hypothetical protein; 23.3 2.8E+02 0.006 19.7 5.4 68 82-158 23-90 (119)
100 PF13410 GST_C_2: Glutathione 22.7 1.7E+02 0.0037 17.7 3.7 23 135-157 4-26 (69)
101 PF11647 PMT_C: C-terminal reg 22.4 1.4E+02 0.0031 19.2 3.3 21 139-159 41-61 (66)
102 PRK14688 hypothetical protein; 22.2 2.8E+02 0.006 19.9 5.1 67 82-157 23-89 (121)
103 PRK08905 lipid A biosynthesis 21.6 1.4E+02 0.003 24.3 3.9 39 116-160 227-265 (289)
104 cd08904 START_STARD6-like Lipi 21.4 4E+02 0.0087 20.8 15.7 140 6-152 48-202 (204)
105 COG2122 Uncharacterized conser 21.1 1.4E+02 0.0031 24.3 3.7 28 132-159 31-58 (256)
106 PRK07920 lipid A biosynthesis 20.8 1.4E+02 0.0031 24.4 3.8 39 117-160 236-274 (298)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.1e-44 Score=273.44 Aligned_cols=150 Identities=33% Similarity=0.533 Sum_probs=139.6
Q ss_pred CccEEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccc-eEEEEEEecCCceeeEEEEEEEecCCc
Q 031343 1 MGVLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAG-SVKIMYFAEGNKHTYAKQRIDVLDKEK 79 (161)
Q Consensus 1 m~~~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~G-siR~~~~~~g~~~~~~kErl~~~D~~~ 79 (161)
|++++++.|+++++||+|+|++|+ +.++++||++|+.|+++++++|||++| |||.|+|.+|++.+++|||++.+|+++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence 999999999999999999999995 788999999999999999999999887 999999999999999999999999999
Q ss_pred cEEEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhC
Q 031343 80 FYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLAN 156 (161)
Q Consensus 80 ~~~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~ 156 (161)
|+++|++|||+++. .|.+|..++++.|.++|+|+++|+++|++.+++.++ |+.+ ++++..|+|+||+||++|
T Consensus 80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~-p~~~---~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPP-PEKY---LDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHH-HHHH---HHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCC-cHHH---HHHHHHHHHHHHHHHhcC
Confidence 99999999999886 899999999999998889999999999999998866 6555 677999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=8.5e-37 Score=229.17 Aligned_cols=146 Identities=36% Similarity=0.489 Sum_probs=129.6
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCccc-ccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEE
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHN-LFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~-llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (161)
++++.|++|+||||++|+++ +|+.+ +.+.|+| .|++|++++|+|++||||.|+|.+|++.++++|||+.+|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~-~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAF-VLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHHH-hcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 47899999999999999999 59985 4455666 799999999999999999999998877789999999999999999
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhh
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLA 155 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 155 (161)
+|++++|+.+.++|++|+++++|.|.++++|+++|+++|++.+++.++ |+.+ ++.+..+++++++|++.
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~-p~~~---~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPP-EEEI---KAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCC-HHHH---HhHHHHHHHHHHHHHhc
Confidence 999999998655799999999999998889999999999999988666 6665 57778888999988865
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.80 E-value=1e-17 Score=120.95 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=113.5
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (161)
.++.+++|++|+++||+++ .|+.+ +++|+|. ++++++++++.++|+++.+.+..|. .+++++..+|+.++.++|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALL-SDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHH-hCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEE
Confidence 4788999999999999999 59998 8999996 8899987765468999999987663 689999999998889999
Q ss_pred EEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHH
Q 031343 85 TVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHL 153 (161)
Q Consensus 85 ~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 153 (161)
++.+|+. ++.++..++++.|.++++|.++|+..|++.+. .+. +..-+...+.....++.|.++|
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTD-ELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC-cch-HHHHHHHHHHHHHHHHHHHHhh
Confidence 9998743 68889999999998877899999999999876 333 3333335666777788887775
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.66 E-value=3.3e-14 Score=102.56 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=88.5
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEE
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCK 83 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (161)
.+++.++.|++||++||+.+. |+.+ +++|.|. +.++++.+++ ++|..+.+....- ..+++++..+|+.++.+.
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLS-DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHT-TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEECCCHHHHHHHHh-Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEEE
Confidence 578999999999999999995 9999 8999996 8899977633 4566666764331 378999999998899999
Q ss_pred EEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEE
Q 031343 84 STVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHI 123 (161)
Q Consensus 84 y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~ 123 (161)
|++. . .++..+..+++++|.++ ||.++|+.+|++
T Consensus 75 ~~~~--~---~~~~~~~~~~~~~~~~~-gt~v~~~~~~~~ 108 (139)
T PF10604_consen 75 WRFV--P---SGFTNGTGRWRFEPVGD-GTRVTWTVEFEP 108 (139)
T ss_dssp EEEE--S---SSSCEEEEEEEEEEETT-TEEEEEEEEEEE
T ss_pred EEEE--e---cceeEEEEEEEEEEcCC-CEEEEEEEEEEE
Confidence 9996 2 26888899999999975 599999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=1.5e-13 Score=100.73 Aligned_cols=135 Identities=13% Similarity=0.017 Sum_probs=94.6
Q ss_pred EEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecC---C-ceeeEEEEEEEecCCccEE
Q 031343 7 DKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEG---N-KHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 7 ~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g---~-~~~~~kErl~~~D~~~~~~ 82 (161)
+.++.|++||++||+++ .|+.+ +|+|+|+ +++++++++.+ .+.........+ . -.+.+..++...|+.++.+
T Consensus 2 ~~~~~i~a~~~~Vw~~l-~D~~~-~~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i 77 (144)
T cd08866 2 VARVRVPAPPETVWAVL-TDYDN-LAEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPREL 77 (144)
T ss_pred eEEEEECCCHHHHHHHH-hChhh-HHhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceE
Confidence 57899999999999999 59999 8999997 88998887643 122111110000 0 0124556677777778899
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCC-CCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHHHHH
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGD-GGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVEAHL 153 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~-~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 153 (161)
.|++++| ++..|.+++++.|.++ ++|.++|.+.+++.... | ....+. ..+.+..+++.|.+.+
T Consensus 78 ~~~~~~g-----~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~-p--~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 78 DFEMVEG-----DFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFA-P--VFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred EEEEcCC-----chhceEEEEEEEECCCCCeEEEEEEEEEEeCCCC-C--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 3778999999999987 68999999999997632 2 223332 3445566666666543
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.50 E-value=2.2e-12 Score=94.27 Aligned_cols=113 Identities=24% Similarity=0.313 Sum_probs=84.8
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEe-cCCceeeEEEEEEEecCCccEEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA-EGNKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 84 (161)
++++++|++|+++||+++. |+.+ +|+|+|. .+++.+++++....++.+... .|.... .+....+|++.+.+.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHT--WTSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEE--EEEEEEEcCCCCEEEE
Confidence 3688999999999999995 9999 8999996 455545543322245555554 333222 2445568888899999
Q ss_pred EEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCC
Q 031343 85 TVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDG 127 (161)
Q Consensus 85 ~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~ 127 (161)
..+++.. .+..+.++++|+|.++++|.|+|..+|++....
T Consensus 75 ~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~ 114 (142)
T cd08861 75 RQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDS 114 (142)
T ss_pred EEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCCC
Confidence 9987654 588899999999998788999999999998643
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=9.7e-12 Score=89.94 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=82.3
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcC-CCccceEEEEEEecCCceeeEEEEEEEecCCccEE
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQG-DGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eG-dg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (161)
.+++.++.|++||++||+++ .|+.+ +|+|+|. +.+++++++ +++.+....+++..++-.....-+++ .++ .+.+
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i 76 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVL-ADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV 76 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHH-hChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence 46889999999999999999 59999 8999996 888988665 33333344455543321111122232 223 6789
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCC
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGD 126 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~ 126 (161)
+|+..+|. +...+..++++.|.++ +|.++|+.++++...
T Consensus 77 ~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~ 115 (140)
T cd07819 77 SWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTVP 115 (140)
T ss_pred EEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecCC
Confidence 99998774 4778889999999866 799999999998663
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=6.3e-12 Score=90.34 Aligned_cols=107 Identities=14% Similarity=0.033 Sum_probs=82.9
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCC-CccceEEEEEEecCCceeeEEEEEEEecCCccEEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGD-GEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGd-g~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (161)
++.++.|++|+|+||+++. |+.+ +++|.|. +.+++.+.+. .++|+...+....++..-.+++++..+|+ ++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA-DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHH-Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEE
Confidence 3578999999999999995 9999 8999997 6677766543 36799888876533322356889998885 578889
Q ss_pred EEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEE
Q 031343 85 TVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHI 123 (161)
Q Consensus 85 ~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~ 123 (161)
+..+|. + .+..++++.|.++ +|.++|+.+|..
T Consensus 77 ~~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 77 RGSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred EecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 876542 2 3578899999754 799999999987
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.42 E-value=6.2e-12 Score=91.91 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=96.4
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKST 85 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (161)
++.+++|++|++.+|+++. |..+ +|+|+|+ +.+++++++++ .+....+.+.-++.......++. +++ .+++++.
T Consensus 1 ~~~s~~i~ap~~~v~~~i~-D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~ 74 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVA-DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAE 74 (138)
T ss_pred CeEEEEcCCCHHHHHHHHH-HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEE
Confidence 3678999999999999995 9999 9999997 88999988765 34444455543321123344554 666 6678888
Q ss_pred EEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHHHHHh
Q 031343 86 VFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVEAHLL 154 (161)
Q Consensus 86 vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l~ 154 (161)
.++| +++.+.+++++.|.++|+|.|+|.++|++.+... .-..+. +.+....+++.+++-+.
T Consensus 75 ~~~g-----~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~---~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 75 LVDG-----PFKHLEGEWRFKPLGENACKVEFDLEFEFKSRLL---EALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred ecCC-----ChhhceeEEEEEECCCCCEEEEEEEEEEECCHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877 4778899999999988899999999999986421 111211 35555666666665543
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=3.8e-11 Score=86.44 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=82.4
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecC-CceeeEEEEEEEecCCccEEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEG-NKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g-~~~~~~kErl~~~D~~~~~~~y 84 (161)
++.++.|++|+++||+++. |+.+ +++|+|. +..++... .++|+...+.+..+ +......+++..+|+. +.+.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT-DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHh-cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 6789999999999999995 9998 8999985 55555321 45677777776533 2334678888989884 57889
Q ss_pred EEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEc
Q 031343 85 TVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIK 124 (161)
Q Consensus 85 ~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~ 124 (161)
+...++. ..-....++.|.|.++++|.++|...|...
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 76 RGGLPFP---GLLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred EecCCCC---cEeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 9876654 233566788999986778999999887653
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.38 E-value=7.5e-11 Score=85.17 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=80.6
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (161)
+++.++.|+||+++||+++. |+.+ +|+|+|+ +.++++..+..++|+...++...+. .+..++.++++.+ .+++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~i~~~~p~~-~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGLV---RSTFTVTELRPGH-SFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCCC---ceEEEEEEecCCC-EEEE
Confidence 57889999999999999995 9999 8999996 8889876543267877666654332 4677888888654 5777
Q ss_pred EEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEc
Q 031343 85 TVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIK 124 (161)
Q Consensus 85 ~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~ 124 (161)
+... +...+..++++.+.++++|.++|+.+|...
T Consensus 75 ~~~~------~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 75 TGPA------PGISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred EecC------CCEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 6532 123456788999986679999999988753
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=7.5e-11 Score=82.55 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=96.5
Q ss_pred EEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCC-CccceEEEEEEecCCceeeEEEEEEEecCCccEEEEE
Q 031343 7 DKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGD-GEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKST 85 (161)
Q Consensus 7 ~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGd-g~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (161)
+.++.|++|+++||+++. |+.+ +++|.|+ +.++++.++. ...|....+.+..+ .......++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEE
Confidence 568899999999999995 9998 8999997 7788876653 35666666665422 22356888888887 6788899
Q ss_pred EEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCC--CCchHhHhhHHHHHHHHHHHHHH
Q 031343 86 VFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGE--SKLEEELKGSVELGTALFKAVEA 151 (161)
Q Consensus 86 vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~k~ie~ 151 (161)
...++. + ..+..++++.+.++++|.++|+.++.+..... .. +...+...+.+..+++.+++
T Consensus 77 ~~~~~~---~-~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 77 VTGGGG---G-VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFA-LLLAGALKRELAALLRALKA 139 (141)
T ss_pred EecCCC---C-cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhh-HHHHHHHHhHHHHHHHHHHh
Confidence 987764 2 67888999999866589999999999977542 22 22222234444555555544
No 13
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=1.6e-10 Score=84.50 Aligned_cols=139 Identities=11% Similarity=0.027 Sum_probs=91.5
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCC--CccceEEEEEEec-CCceeeEEEEEEEecCCccEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGD--GEAGSVKIMYFAE-GNKHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGd--g~~GsiR~~~~~~-g~~~~~~kErl~~~D~~~~~~ 82 (161)
++.++.|+|||++||+++. |+.+ +|+|.|.... .....++ -++|+..++.... |.+. .+..++..+++.. .+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~~-~~~~~v~~~~p~~-~l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGPY-RITNHVVAFEENR-LI 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-Cccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCce-EEEEEEEEECCCC-EE
Confidence 6789999999999999995 9998 8999985332 2222333 3688888777653 3333 4566788888755 48
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHH
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHL 153 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 153 (161)
+|+..-.+. +......++++.|.++++|.++++..|...+..... ....+.........++.|++||
T Consensus 77 ~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~-~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKEL-LGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhc-cccCCCCHHHHHHHHHHHHHHh
Confidence 888531121 233355678889987788999999998866432111 1011112456677788888775
No 14
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.27 E-value=3e-10 Score=81.93 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=92.2
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKST 85 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (161)
++.+++|+||+++||+++. |+.+ +|+|.|. +..+......| |+.+.+....++....+..++..+|+. +.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence 6789999999999999995 9998 8999995 22222111222 676655443322234678899999966 678899
Q ss_pred EEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHH
Q 031343 86 VFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHL 153 (161)
Q Consensus 86 vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 153 (161)
...++. .+.-....+++|.|.+ ++|.++|+.++.+.... . .............++..|.+||
T Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 76 WAFSDE--TPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--E-QEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred ecccCC--CCCCceEEEEEEEECC-CCEEEEEEEEccChHhH--H-HHHHhCHhhHHHHHHHHHHHHh
Confidence 887653 1244567888899986 67999999999886421 2 2333334555566666666655
No 15
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.20 E-value=2e-09 Score=78.11 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=76.6
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCC--ceeeEEEEEEEecCCccEE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGN--KHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~--~~~~~kErl~~~D~~~~~~ 82 (161)
.++.++.+++|+++||+++ .|+.+ +++|+|+ +.+++.+++++ .. -.+++..+. ..-...-++..+|+. +.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 74 (144)
T cd05018 2 KISGEFRIPAPPEEVWAAL-NDPEV-LARCIPG-CESLEKIGPNE-YE--ATVKLKVGPVKGTFKGKVELSDLDPP-ESY 74 (144)
T ss_pred eeeeEEEecCCHHHHHHHh-cCHHH-HHhhccc-hhhccccCCCe-EE--EEEEEEEccEEEEEEEEEEEEecCCC-cEE
Confidence 4788999999999999999 59999 8999997 77787665432 11 112222121 111124455555554 566
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCC
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGD 126 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~ 126 (161)
.++....+. .....+..++++.|. +++|.++|+++|++.+.
T Consensus 75 ~~~~~~~~~--~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 75 TITGEGKGG--AGFVKGTARVTLEPD-GGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEEcCC--CceEEEEEEEEEEec-CCcEEEEEEEEEEEccC
Confidence 677653332 146789999999998 67899999999998764
No 16
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=1.2e-09 Score=78.87 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=78.5
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (161)
+++.++.|++|+++||+++. |+.+ +|+|.|. +++++++.|. +....+.+..|... ....++..+++.. .+.|
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~-D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~~-~~~~~v~~~~~~~-~i~~ 72 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWR-DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGLSV-EWDAEITEQVPNE-RIAW 72 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHh-Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCCcE-EEEEEEeccCCCC-EEEE
Confidence 36789999999999999995 9999 8999996 8899876542 23333333334333 3455566555544 5888
Q ss_pred EEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCC
Q 031343 85 TVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGD 126 (161)
Q Consensus 85 ~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~ 126 (161)
....|. + .+..++.|.|.++++|.+++++.|++...
T Consensus 73 ~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 73 RSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 876542 3 56688899997767899999999998753
No 17
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=2.8e-09 Score=78.53 Aligned_cols=113 Identities=16% Similarity=0.064 Sum_probs=81.6
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeE---E--EEcCCCccceEEEEEEecCCceeeEEEEEEEecCC
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSV---V--YEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKE 78 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~---e--~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~ 78 (161)
.+++.++.|++|+++||+++. |+.+ +|+|+|. ...+ + ..+++.++|+...++...+. .....++..+++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~-D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p- 75 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVN-DLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP- 75 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHh-Cccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-
Confidence 368899999999999999995 9999 8999995 3322 1 12234468888777654421 133556777765
Q ss_pred ccEEEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCC
Q 031343 79 KFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGD 126 (161)
Q Consensus 79 ~~~~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~ 126 (161)
++.+.|++..++++ + .....++++.|. ++||.++|+.+|+....
T Consensus 76 ~~~i~~~~~~~~~~--~-~~~~~~~~~~~~-~~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 76 NERIEYELRFIKPF--E-ATNDVEFTLEPV-GGGTKVTWGMSGELPFP 119 (150)
T ss_pred CcEEEEEEEecCCc--c-ccceEEEEEEEc-CCceEEEEEEEecCCch
Confidence 56788998865432 1 367799999998 56899999999987653
No 18
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=7.1e-10 Score=81.25 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=83.0
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCC-C--ccceEEEEEEecCC-ceeeEEEEEEEecCCccE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGD-G--EAGSVKIMYFAEGN-KHTYAKQRIDVLDKEKFY 81 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGd-g--~~GsiR~~~~~~g~-~~~~~kErl~~~D~~~~~ 81 (161)
++.++.|++|+++||+.+. |..+ +|+|+|+ +.++++++.+ | .+|+.-++.+..++ +..+ +-++..+++ ++.
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w-~~~it~~~p-~~~ 75 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRW-TTEITEVEP-PRR 75 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEE-EEEEEEEcC-CCe
Confidence 4678999999999999994 9999 8999997 7788887433 2 46888888776553 3445 555666665 445
Q ss_pred EEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEc
Q 031343 82 CKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIK 124 (161)
Q Consensus 82 ~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~ 124 (161)
++...+.| ++..+..+..+.|.++ ||.+++.++|+..
T Consensus 76 f~~~~~~G-----~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 76 FVDEQVSG-----PFRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEEEeccC-----CchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 87887765 4667788889999765 7999999999993
No 19
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.18 E-value=3.6e-09 Score=79.20 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=82.1
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCC-ccceEEEEEE-ecCCceeeEEEEEEEecCCccEE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDG-EAGSVKIMYF-AEGNKHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg-~~GsiR~~~~-~~g~~~~~~kErl~~~D~~~~~~ 82 (161)
..+++|+|++||+++|+++ .|..+ .|.|.|. +..+++++.++ +.|+.-++.. ..|....+..|+. +|...+++
T Consensus 2 ~~~~si~i~a~~~~v~~lv-aDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~--~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMT-NDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERT--LDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHH-Hhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEE--ecCCCcEE
Confidence 4678999999999999998 59999 9999996 88888876543 4553222233 2332234434432 78888888
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCC
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGE 128 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~ 128 (161)
.+.-. ... ++.....+.+|+|.++ ||.|++..+|+..++..
T Consensus 77 ~~~~~-~~~---p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~ 117 (146)
T cd08860 77 RARRV-ETG---PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGAP 117 (146)
T ss_pred EEEEe-cCC---CcceeeeeEEEEECCC-CEEEEEEEEEEECCCCc
Confidence 77411 112 6889999999999855 59999999999876553
No 20
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.13 E-value=5.4e-09 Score=75.22 Aligned_cols=106 Identities=22% Similarity=0.382 Sum_probs=76.5
Q ss_pred eccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecC-CceeeEEEEEEEecCCccEEEEEEEecC
Q 031343 12 AAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEG-NKHTYAKQRIDVLDKEKFYCKSTVFEED 90 (161)
Q Consensus 12 i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g-~~~~~~kErl~~~D~~~~~~~y~vieg~ 90 (161)
|++|+++||+++ .|..+ +|.|+|. ++++++++.++. +..-.+.+..+ .+..+ ..++....+.. +.+..++|
T Consensus 1 V~ap~~~V~~~i-~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~g- 72 (130)
T PF03364_consen 1 VNAPPEEVWSVI-TDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSW-TSRVTEDPPER--IRFEQISG- 72 (130)
T ss_dssp ESS-HHHHHHHH-TTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEE-EEEEEEECTTT--EEEESSET-
T ss_pred CCCCHHHHHHHH-HHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEE-EEEEEEEEeee--eeeeecCC-
Confidence 689999999999 59999 9999996 889999887653 33334555444 33444 55555333333 77777666
Q ss_pred CCCcCceeEEEEEEEEecCC--CCCeEEEEEEEEEcCCCCC
Q 031343 91 NMLDILESIVYEIKFEASGD--GGTNCKTATEFHIKGDGES 129 (161)
Q Consensus 91 ~l~~~~~~y~~ti~v~p~~~--~gs~v~W~~~y~~~~~~~~ 129 (161)
+++.+..+.+++|.++ |||.++++.+|+..+....
T Consensus 73 ----~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~ 109 (130)
T PF03364_consen 73 ----PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPL 109 (130)
T ss_dssp ----TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSS
T ss_pred ----CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHh
Confidence 5899999999999864 3788888888888665544
No 21
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=8.7e-09 Score=76.21 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=77.3
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEc--CCCccceEEEEEEecCCce-eeEEEEEEEecCCccE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQ--GDGEAGSVKIMYFAEGNKH-TYAKQRIDVLDKEKFY 81 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~e--Gdg~~GsiR~~~~~~g~~~-~~~kErl~~~D~~~~~ 81 (161)
.++.+..|++||++||+++. |+.+ +|+|+|. ++++++++ ++.++|+..++......+. ..+.-++..+|+ .+.
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~t-D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~ 77 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLV-DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSL 77 (146)
T ss_pred cceEEEEecCCHHHHHHHHh-Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcE
Confidence 35678899999999999995 9998 9999996 88998876 3346777755543322121 233445555544 567
Q ss_pred EEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcC
Q 031343 82 CKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKG 125 (161)
Q Consensus 82 ~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~ 125 (161)
+.++. +|+. . ...+++|.|.+ +||.|+++.+++..+
T Consensus 78 ~~~~~-~g~~-----~-~~~~~~~~~~~-~gt~vt~~~~~~~~~ 113 (146)
T cd07824 78 LEVRA-SGDL-----E-GVGRWTLAPDG-SGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEEE-EEee-----e-EEEEEEEEEcC-CCEEEEEEEEEEcCH
Confidence 78875 5653 1 25788899964 579999999999854
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.07 E-value=1.2e-08 Score=75.51 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=82.3
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCC-ceee-EEEEEEEecCCccEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGN-KHTY-AKQRIDVLDKEKFYCK 83 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~-~~~~-~kErl~~~D~~~~~~~ 83 (161)
++.++++++||+++|+++. |+.+ ++.|.|+ +++++.. |++.. .-.+++.-|. ...+ .+=++..+++..+.+.
T Consensus 1 ~~~~~~v~a~pe~vw~~l~-D~~~-~~~~~pg-~~~~~~~-~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 1 LENEFTVPAPPDRVWALLL-DIER-VAPCLPG-ASLTEVE-GDDEY--KGTVKVKLGPISASFKGTARLLEDDEAARRAV 74 (146)
T ss_pred CCceEEecCCHHHHHHHhc-CHHH-HHhcCCC-ceecccc-CCCeE--EEEEEEEEccEEEEEEEEEEEEeccCCCcEEE
Confidence 3578999999999999994 9998 8999997 8888754 33222 2223333221 1111 1114566665678887
Q ss_pred EEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHHHH
Q 031343 84 STVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVEAH 152 (161)
Q Consensus 84 y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~ 152 (161)
++.-..+.-...--....++++.| .+++|.++|+++++..+.........++. +.+.+..+++.|.+.
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 775421111001225677888888 45789999999998766432110222322 334445555555544
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.96 E-value=4.9e-08 Score=74.19 Aligned_cols=111 Identities=8% Similarity=0.139 Sum_probs=83.3
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEE
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCK 83 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (161)
..+..++.+++||+++|+++ .|..+ .|+|+|. .+.+++++-++. +.+..++++-++-......|.. +++. +++.
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv-~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~-~~I~ 88 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLV-NDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSN-QSIL 88 (158)
T ss_pred CeEEEEEEecCCHHHHHHHH-HHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCC-CEEE
Confidence 37888999999999999998 59998 9999996 777777765432 3344455543332234455555 3444 3799
Q ss_pred EEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcC
Q 031343 84 STVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKG 125 (161)
Q Consensus 84 y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~ 125 (161)
+++++| +++.+...++|+|.++++|.|++..+|+...
T Consensus 89 ~~~~~G-----pF~~l~g~W~f~p~~~~~t~V~~~l~fef~s 125 (158)
T PRK10724 89 MQLVDG-----PFKKLIGGWKFTPLSQEACRIEFHLDFEFTN 125 (158)
T ss_pred EEecCC-----ChhhccceEEEEECCCCCEEEEEEEEEEEch
Confidence 999987 4888999999999877789999999999755
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.84 E-value=1.7e-07 Score=70.22 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=96.0
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCC--ceeeEEEEEEEecCCccEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGN--KHTYAKQRIDVLDKEKFYCK 83 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~--~~~~~kErl~~~D~~~~~~~ 83 (161)
++-+..|++|++++|+.+. |+.. +...+|+ ++|++ .+||.- .-++.+.-|. ..-.-+=++..+|+..++++
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~-dpe~-~a~ciPG-~qs~e-~~g~e~---~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~ 75 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLN-DPEQ-VAACIPG-VQSVE-TNGDEY---TAKVKLKIGPLKGTFSGRVRFVNVDEPPRSIT 75 (146)
T ss_pred ccceEEecCCHHHHHHHhc-CHHH-HHhhcCC-cceee-ecCCeE---EEEEEEeecceeEEEEEEEEEccccCCCcEEE
Confidence 5678899999999999995 9998 7789997 99999 567632 2223332221 11122446666788899988
Q ss_pred EEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCC-CCCchHhHhh-HHHHHHHHHHHHHHHHhh
Q 031343 84 STVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDG-ESKLEEELKG-SVELGTALFKAVEAHLLA 155 (161)
Q Consensus 84 y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~-~~~~~~~~~~-~~~~~~~~~k~ie~~l~~ 155 (161)
...-.|. +. .+-..++.++++|.+++ |++.|.+.-+-.+.. ..- ++.++. +.+.+..+++.|.+.|-.
T Consensus 76 i~g~G~~-~~-g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlG-sr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 76 INGSGGG-AA-GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLG-SRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred EEeeccc-cc-ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8775433 33 78888999999998765 999999998776532 222 333433 556667888888877643
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.70 E-value=1.6e-06 Score=64.05 Aligned_cols=136 Identities=18% Similarity=0.199 Sum_probs=80.1
Q ss_pred EEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEEEEe
Q 031343 9 DGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFE 88 (161)
Q Consensus 9 ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vie 88 (161)
+.++++|++++|+.| .|... +.+.+|+ +++++.+. +.-.+.++ +.+++=...-..+=++..+|+.++.. .++-.
T Consensus 2 s~~v~a~~~~vw~~l-~D~~~-l~~ciPG-~~~~e~~~-~~~~~~~~-v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~g 75 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFL-SDPEN-LARCIPG-VESIEKVG-DEYKGKVK-VKVGPIKGTFDGEVRITEIDPPESYT-LEFEG 75 (140)
T ss_dssp EEEECS-HHHHHHHH-T-HHH-HHHHSTT-EEEEEEEC-TEEEEEEE-EESCCCEEEEEEEEEEEEEETTTEEE-EEEEE
T ss_pred cEEecCCHHHHHHHh-cCHHH-HHhhCCC-cEEeeecC-cEEEEEEE-EEeccEEEEEEEEEEEEEcCCCcceE-eeeec
Confidence 578999999999999 59998 7799998 99999765 42222222 22211101112344566677777653 33322
Q ss_pred cCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCC-CCCchHhHhh-HHHHHHHHHHHHHHHH
Q 031343 89 EDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDG-ESKLEEELKG-SVELGTALFKAVEAHL 153 (161)
Q Consensus 89 g~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~-~~~~~~~~~~-~~~~~~~~~k~ie~~l 153 (161)
.+.. .-.+..+.+++...++++|.+.|++++.-.+-. ... ...++. +...+..+++.|++.|
T Consensus 76 ~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g-~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 76 RGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLG-QRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhh-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2221 344666777777766666999999999987742 222 333333 4445556666666543
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.56 E-value=2.6e-06 Score=63.93 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=84.8
Q ss_pred cEEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEE
Q 031343 3 VLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 3 ~~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (161)
..+++.++.|++|+++||++|. |+.. ++.|.|.. .++-.+|...++.+.... .....-++..+|+. +.+
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p~-~~l 78 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALT-DPER-LARWFAPG-------TGDLRVGGRVEFVMDDEE-GPNATGTILACEPP-RLL 78 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHc-CHHH-HHhhcCCC-------CCCcccCceEEEEecCCC-CCccceEEEEEcCC-cEE
Confidence 4578999999999999999995 9988 89999842 123345555556654311 12346677777776 466
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCC
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANP 157 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p 157 (161)
.|+...++ .....+++|.+.+ +||.++.+.++.+.... ... ..++-..++..|.+|+-..+
T Consensus 79 ~~~~~~~~------~~~~~~~~l~~~~-~gT~v~~~~~~~~~~~~----~~~---~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 79 AFTWGEGG------GESEVRFELAPEG-DGTRLTLTHRLLDERFG----AGA---VGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEecCCC------CCceEEEEEEEcC-CCEEEEEEEeccCchhh----hhh---hcccHHHHHHHHHHHHcCCC
Confidence 67765333 1224577778764 67888888877654311 111 24555677777887776654
No 27
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.52 E-value=3e-06 Score=61.62 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=79.6
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (161)
+++.++.|+||+++||+++. |+.. +++|.|... .....|.+..|. +.+..+. .....=++..+++. +.+.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~-~~~W~~~~~--~~~~~~~~~~g~---~~~~~~~-~~~~~~~i~~~~p~-~~l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEH-FGQWFGVKL--GPFVVGEGATGE---ITYPGYE-HGVFPVTVVEVDPP-RRFSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-Chhh-hhhcccccC--CCcccCCcceeE---EecCCCC-ccceEEEEEEeCCC-cEEEE
Confidence 57899999999999999995 9888 899998632 121122222232 3333221 11334566666654 44557
Q ss_pred EEEecCC---CC-cCceeEEEEEEEEecCCCCCeEEEEEE-EEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHh
Q 031343 85 TVFEEDN---ML-DILESIVYEIKFEASGDGGTNCKTATE-FHIKGDGESKLEEELKGSVELGTALFKAVEAHLL 154 (161)
Q Consensus 85 ~vieg~~---l~-~~~~~y~~ti~v~p~~~~gs~v~W~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (161)
+...... .. ..-.....+++|.+.+ ++|.++++-. |...++.. . +.......++-..++..|++||-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~-~-~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAER-R-AEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHH-H-HHHHHhhhhhHHHHHHHHHHHhc
Confidence 6543220 00 0122355888899975 5799999876 32222111 0 11222345666788888888874
No 28
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.49 E-value=2.2e-05 Score=57.71 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=77.8
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCc-ceeeEEEEcCCCccceEEEEEEe-cCCceeeEEEEEEEecCCccEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQ-AFKSVVYEQGDGEAGSVKIMYFA-EGNKHTYAKQRIDVLDKEKFYCK 83 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~-~v~s~e~~eGdg~~GsiR~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 83 (161)
++.+..+++|+++||+++. |... +.+|... .--.+...+.|-.+|..-.+.+. .++......=++..+|+.++ +.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EE
Confidence 5677889999999999994 8887 6777753 11112222333334444334433 23322233446677776544 44
Q ss_pred EEE--EecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHh
Q 031343 84 STV--FEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLL 154 (161)
Q Consensus 84 y~v--ieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (161)
|+- -.++. +......++.+.|.+ ++|.++.+-.+-..++.. .......+-..++..|++||-
T Consensus 79 ~t~~~~~~~~---~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~-----~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGT---LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGDD-----DPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCc---cccceEEEEEEEECC-CCEEEEEEEEEecccccc-----hhhhHHHHHHHHHHHHHHHHh
Confidence 543 22322 222344788888874 678888887763322211 112234666778888888874
No 29
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.40 E-value=1.7e-05 Score=58.53 Aligned_cols=138 Identities=10% Similarity=0.007 Sum_probs=80.5
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEe-cCCceeeEEEEEEEecCCcc-EEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA-EGNKHTYAKQRIDVLDKEKF-YCK 83 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~-~g~~~~~~kErl~~~D~~~~-~~~ 83 (161)
++.+..+++|+++||+++ .|... +.+|....--.+...+.|-.+|..-++.+. +++....+.=++..+|+.++ .++
T Consensus 2 l~i~r~~~ap~e~Vw~a~-Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAH-TDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHh-CCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEE
Confidence 577889999999999999 48877 667765432222233444445554445543 22222233446677776543 344
Q ss_pred EEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHh
Q 031343 84 STVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLL 154 (161)
Q Consensus 84 y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (161)
+.. ++.. -.....++.+.+.+ ++|.++.+..|...... . ........++-...+..|++||.
T Consensus 80 ~~~-~~~~----~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~~--~-~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 80 EEF-EGLP----DGVALETVTFTELG-GRTRLTATSRYPSKEAR--D-GVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred eEe-cCCC----CCceEEEEEEEECC-CCEEEEEEEEeCCHHHH--H-HHHHhhHHHHHHHHHHHHHHHHh
Confidence 443 3322 12345688888874 68999887665321110 0 11222345677788999998885
No 30
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.39 E-value=1.8e-05 Score=56.70 Aligned_cols=133 Identities=12% Similarity=0.049 Sum_probs=78.2
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (161)
+++.++.|++||++||+++. |... ++.|.+... .+++-.+|..-++...... ...+.=++..++ .++.+.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~-~~~~~~~v~~~~-~~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDG-TVDVEGEVLESD-PPRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchh-hhheecccc-----cccCCcCCCeEEEEeCCCc-ccccceEEEEec-CCCeEEE
Confidence 36789999999999999994 9888 889987622 2334345554344443311 112344566676 4455666
Q ss_pred EEEecCCC-CcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHH
Q 031343 85 TVFEEDNM-LDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHL 153 (161)
Q Consensus 85 ~vieg~~l-~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 153 (161)
+...+... ..+-.....++.+.|.+ ++|.++.+.+-.+.+ +...+...+....+++.|.++|
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~-~~t~l~~~~~~~~~~------~~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVG-DVVKLTVTHDGFPPG------SPTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecC-CcEEEEEEecCCCCc------hhHHHhhhcCHHHHHHHHHHHh
Confidence 65433221 01233566778888864 467766665543322 1122223566677888888876
No 31
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.34 E-value=6.2e-05 Score=55.51 Aligned_cols=139 Identities=9% Similarity=0.005 Sum_probs=75.0
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcc-eeeEEEEcCCCccceEEEEEEe-cCCceeeEEEEEEEecCCcc-EE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQA-FKSVVYEQGDGEAGSVKIMYFA-EGNKHTYAKQRIDVLDKEKF-YC 82 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~-v~s~e~~eGdg~~GsiR~~~~~-~g~~~~~~kErl~~~D~~~~-~~ 82 (161)
+..++.|+||+++||+++. |... +.+|.+.. .. +...+.|-.+|..-++.+. +++..-.+.=++..+|+.++ .+
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~-~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPEL-LKQWFCPKPWT-TEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGERLVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHH-HhccCCCCCcc-ceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCCEEEE
Confidence 5678899999999999995 8877 66676521 11 1112223233333344442 22221223456777887654 33
Q ss_pred EEEEEecC-CCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhH-hhHHHHHHHHHHHHHHHHh
Q 031343 83 KSTVFEED-NMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEEL-KGSVELGTALFKAVEAHLL 154 (161)
Q Consensus 83 ~y~vieg~-~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l~ 154 (161)
++.+.++. +...+ .-..+++++|. ++||.++.+..+.... . . +... ....++-..++..|++||.
T Consensus 79 t~~~~~~~~~~~~~--~~~v~~~~~~~-~~gT~Ltl~~~~~~~~-~--~-~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKP--FMTAIITFEDE-GGGTRYTARARHWTEA-D--R-KQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCC--cEEEEEEEEec-CCcEEEEEEEEeCCHH-H--H-HHHHHcCHHHHHHHHHHHHHHHHh
Confidence 33332221 11111 14568888886 4678888765442110 0 0 1111 1124667788888988875
No 32
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.34 E-value=4.5e-06 Score=64.53 Aligned_cols=111 Identities=12% Similarity=0.109 Sum_probs=84.2
Q ss_pred cEEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEE
Q 031343 3 VLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 3 ~~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (161)
...++..|+|+.|++.||..++ |+.+ +|.||.+ +.|+++++..- |...++-+.|..++| +-+|. -|..+..+
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~-dLe~-lP~~Mkh-l~SVkVlddkr---SrW~~~ap~g~~v~W-ea~it-~d~~~e~I 140 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWR-DLEN-LPLWMKH-LDSVKVLDDKR---SRWKANAPLGLEVEW-EAEIT-KDIPGERI 140 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHH-hhhh-hhHHHHh-hceeeccCCCc---cceeEcCCCCceEEE-eehhh-ccCCCcEE
Confidence 3467889999999999999995 9999 9999986 99999886642 333333334455666 44455 57889999
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCC
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGD 126 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~ 126 (161)
.+.=++|--+.+ +..++|.+..+..|+|+.+.+|-+-++
T Consensus 141 ~W~Sl~Ga~v~N-----sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 141 QWESLPGARVEN-----SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred eeecCCCCcCCC-----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 999999954421 255888888777889999999987654
No 33
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.33 E-value=0.00011 Score=54.15 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=77.3
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccC-cceeeEEEEcCCCccceEEEE--EEec------CCceeeEEEEEEEe
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFP-QAFKSVVYEQGDGEAGSVKIM--YFAE------GNKHTYAKQRIDVL 75 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P-~~v~s~e~~eGdg~~GsiR~~--~~~~------g~~~~~~kErl~~~ 75 (161)
+++.++.|+||+++||+++. |... +.+|.+ ..+.. ...+.|-.+|-.-.+ ++.. .+......=++..+
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~-~~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDA-LAKWLPPDGMTG-TVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHH-HhhcCCCCCeEe-EEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 46778999999999999994 9887 677765 22222 112223223322223 2222 11112334467778
Q ss_pred cCCccEEEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHh
Q 031343 76 DKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLL 154 (161)
Q Consensus 76 D~~~~~~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (161)
++.+ .+.|+..-.+... + .....++.+++.+ ++|.++++...-+.. . . .+ ...++-..++..|++||-
T Consensus 78 ~p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~--~-~-~~---~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG--I-P-PE---DCELGWQESLANLAALVE 145 (146)
T ss_pred cCCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch--h-h-hh---HHHHHHHHHHHHHHHHhc
Confidence 7765 4446542122111 2 2346888888874 678888887643221 1 1 11 235666778888888874
No 34
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.24 E-value=0.00029 Score=54.22 Aligned_cols=144 Identities=9% Similarity=0.059 Sum_probs=86.5
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCc---eeeEEEEEEEecCCcc
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNK---HTYAKQRIDVLDKEKF 80 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~---~~~~kErl~~~D~~~~ 80 (161)
..+..+..++++|+++|+++ .|... .|+|.|. +.++++++-.+.--.+-.+.+....| -..+-.+-...+..+.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi-~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALL-RDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHH-hhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 56778888999999999998 59887 8999995 88998887654212233333322211 1122221112222133
Q ss_pred EEEEEEEecCC---CCc---CceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHHHHH
Q 031343 81 YCKSTVFEEDN---MLD---ILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVEAHL 153 (161)
Q Consensus 81 ~~~y~vieg~~---l~~---~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 153 (161)
.+...+..++. -.. ....+.+...++|.++++|.++....+++.+.. | .-.++. +...+..+++++++.+
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~i-P--~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSI-P--GWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCC-C--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333321 000 146677788899988888999999999987633 2 334443 3444557777776643
No 35
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.22 E-value=9.2e-05 Score=54.16 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=75.9
Q ss_pred EEEEEEeccCHHHHHHHHhhCccccccccc-CcceeeEEEEcCCCccceEEEEEE-ecCCceeeEEEEEEEecCCccEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELF-PQAFKSVVYEQGDGEAGSVKIMYF-AEGNKHTYAKQRIDVLDKEKFYCK 83 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~-P~~v~s~e~~eGdg~~GsiR~~~~-~~g~~~~~~kErl~~~D~~~~~~~ 83 (161)
++.++.|++|+++||+++. |... +.+|. |..+.... .+.|..+|..-.+.+ .+++..-...=++.++++.+ .+.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~-l~~W~~p~~~~~~~-~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEH-LAQWWGPEGFTNTT-HEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHH-HhhccCcCCCcceE-EEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence 5678899999999999994 8877 67776 43232222 223333444333433 22221112234677777654 455
Q ss_pred EEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHh
Q 031343 84 STVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLL 154 (161)
Q Consensus 84 y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (161)
|+.-.++ .. ...+++|.|.+ ++|.++.+..|...... . ........++...++..|++||.
T Consensus 78 ~t~~~~~----~~--~~v~~~~~~~~-~gT~ltl~~~~~~~~~~--~-~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGP----PR--FRLTVTFEEQG-GKTRLTWRQVFPTAAER--C-EKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCC----Cc--EEEEEEEEECC-CCEEEEEEEEcCCHHHH--H-HHHHhCHHHHHHHHHHHHHHHHh
Confidence 7663331 12 45788888875 68988888654211000 0 00011234566788888888874
No 36
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.18 E-value=9.4e-05 Score=53.71 Aligned_cols=128 Identities=10% Similarity=0.130 Sum_probs=75.1
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcc--eeeEEEEcCCCccceEEEEEEe--cCCceeeEEEEEEEecCCcc
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQA--FKSVVYEQGDGEAGSVKIMYFA--EGNKHTYAKQRIDVLDKEKF 80 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~--v~s~e~~eGdg~~GsiR~~~~~--~g~~~~~~kErl~~~D~~~~ 80 (161)
+++.++.++||+++||+++. |... +.+|++.. +... ..+.|-.+|..-++.+. +|.....+.=++..+++. +
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~-~~~W~~~~~~~~~~-~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~ 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEH-ITKWNFASDDWHCP-SAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-K 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHH-HhhCCCCCCCcccc-eeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCC-C
Confidence 36788999999999999994 8776 78895431 1111 12234344544444432 222111234455666654 4
Q ss_pred EEEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHh
Q 031343 81 YCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLL 154 (161)
Q Consensus 81 ~~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (161)
.+.|+...+ ...++.+.|.+ +||.++.+ +.+.+.. . .+. ..++-..++..|++||-
T Consensus 77 ~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~--~-~~~---~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENEN--P-VEM---QRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCC--c-HHH---HHHHHHHHHHHHHHHhh
Confidence 566775321 24788999974 67887764 4433221 1 222 24666788888888874
No 37
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.97 E-value=0.00034 Score=49.27 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=69.4
Q ss_pred ccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEEEEecCCC
Q 031343 13 AVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNM 92 (161)
Q Consensus 13 ~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~l 92 (161)
+||+++||+++. +... +.+|.+......+... | |+++. ..++++.....=++..+++.++ +.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t-~~~~-~~~W~~~~~~~~~~~~--G--g~~~~--~~~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~~ 71 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEG-LAQWFTTSEAEMDFRP--G--GSFRF--MDPDGGEFGFDGTVLEVEPPER-IVFTWRMPDDP 71 (124)
T ss_dssp SSSHHHHHHHHH-SHHH-HHHHSEEEEEEEECST--T--EEEEE--EETTSEEEEEEEEEEEEETTTE-EEEEEEEETSS
T ss_pred CcCHHHHHHHHC-CHhH-HhhccCCCcceeeeec--C--CEEEE--EecCCCCceeeEEEEEEeCCEE-EEEEEEccCCC
Confidence 689999999995 8877 7788322222332211 2 34444 2233332223334777877666 66764333321
Q ss_pred CcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHHHHH
Q 031343 93 LDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVEAHL 153 (161)
Q Consensus 93 ~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 153 (161)
+-.....++.|.+ .+++|.++.+.+ ..+ . ...... ...+...++..|.+||
T Consensus 72 --~~~~~~v~~~~~~-~~~~T~l~~~~~--~~~----~-~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 --DGPESRVTFEFEE-EGGGTRLTLTHS--GFP----D-DDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp --SCEEEEEEEEEEE-ETTEEEEEEEEE--EEH----S-HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred --CCCceEEEEEEEE-cCCcEEEEEEEE--cCC----c-cHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334567888888 466788777762 222 1 222222 4567777888888876
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.95 E-value=0.00067 Score=50.11 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=72.9
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcce-------eeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCC
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAF-------KSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKE 78 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v-------~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~ 78 (161)
++.++.|+||+++||+++. | . +.+|.+..- ..+++--..| |..+ +...+|. ....=++.++|+.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~g~--~~~~g~v~~v~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGEDGT--ECEWGTVLAWEPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-EecCCCc--EeceEEEEEEcCC
Confidence 6789999999999999995 7 3 556654221 2333211122 3333 2222232 1223467777765
Q ss_pred ccEEEEEEE-ecCCCC-cCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCC-CCchHhHhhHHHHHHHHHHHHHHHH
Q 031343 79 KFYCKSTVF-EEDNML-DILESIVYEIKFEASGDGGTNCKTATEFHIKGDGE-SKLEEELKGSVELGTALFKAVEAHL 153 (161)
Q Consensus 79 ~~~~~y~vi-eg~~l~-~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~k~ie~~l 153 (161)
++ +.|+-. ..+... ... .-..++.++|.++++|.++.+-.+....... .. ........++-..++..|++||
T Consensus 73 ~~-l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~-~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 73 SR-LVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEA-AAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred CE-EEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhh-HHHHhcccCcHHHHHHHHHHHh
Confidence 54 445543 111110 011 2357888899754789998887775432210 11 1112122445566788888776
No 39
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0018 Score=48.41 Aligned_cols=140 Identities=15% Similarity=0.064 Sum_probs=76.5
Q ss_pred cEEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEE
Q 031343 3 VLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYC 82 (161)
Q Consensus 3 ~~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (161)
..+++.++.|++|+++||+++. |... +.+|+..-=...++.-|. |....+....| +.-...-++.++++..| +
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~T-dpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~g-~~~~~~~~~~~v~p~~r-I 79 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALT-DPEL-LARWFMPGGAEFDARTGG---GERVRFRGPDG-PVHSFEGEYLEVVPPER-I 79 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhc-CHHH-HHhhcCCCCCccceecCC---ceEEeeecCCC-CeeecceEEEEEcCCcE-E
Confidence 4678999999999999999995 8776 788876211112222221 22333444333 22344556666766554 3
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhH--HHHHHHHHHHHHHHHh
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGS--VELGTALFKAVEAHLL 154 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~k~ie~~l~ 154 (161)
.|+-.-.+.-. +...-..++++.+..+|+ +++..........+. ....+.. .+.-..++..++++|.
T Consensus 80 v~tw~~~~~~~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~-~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 80 VFTWDFDEDGE-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLED-EDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEeccCCCCC-cccCceEEEEEEEecCCC---cEEEEEEeeccccch-hHHHhCcchhhhHHHHHHHHHHhhc
Confidence 35444333211 334455778888865553 333334333332222 2222222 5667788888887764
No 40
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.70 E-value=0.00033 Score=52.49 Aligned_cols=112 Identities=11% Similarity=0.161 Sum_probs=84.0
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEE
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKS 84 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (161)
+++...-++.+|+++++++ .|-.. .|+.+|- -++..+.+.++ ...+-.++.+-.+--++..-|.. +++..+++.-
T Consensus 3 ~~~~s~lv~y~a~~mF~LV-~dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~ 77 (146)
T COG2867 3 QIERTALVPYSASQMFDLV-NDVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSIDM 77 (146)
T ss_pred eeEeeeeccCCHHHHHHHH-HHHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhhh
Confidence 5677788999999999998 48887 8999995 66666777764 23555555543331234455554 5666667777
Q ss_pred EEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCC
Q 031343 85 TVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGD 126 (161)
Q Consensus 85 ~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~ 126 (161)
++++| |++....++++.|-++++|.|...++|+..+-
T Consensus 78 ~l~~G-----PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 78 KLIDG-----PFKYLKGGWQFTPLSEDACKVEFFLDFEFKSR 114 (146)
T ss_pred hhhcC-----ChhhhcCceEEEECCCCceEEEEEEEeeehhH
Confidence 78877 68888999999998788999999999999774
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.60 E-value=0.0021 Score=46.86 Aligned_cols=129 Identities=16% Similarity=0.052 Sum_probs=74.4
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKST 85 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (161)
++.++.|+||+++||+++. |... +.+|.+. -.+.++..| |. -.+.+...++ .+.=++..+++. +.+.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~-l~~W~~~-~~~~~~~~G----g~-~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEI-TTKFWFT-GSSGRLEEG----KT-VTWDWEMYGA--SVPVNVLEIEPN-KRIVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHH-hcccccc-CCCccccCC----CE-EEEEEEccCC--ceEEEEEEEcCC-CEEEEE
Confidence 5678999999999999995 8877 6776443 224443333 33 3355543322 223356667554 556676
Q ss_pred EEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhH---hhHHHHHHHHHHHHHHHHhhC
Q 031343 86 VFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEEL---KGSVELGTALFKAVEAHLLAN 156 (161)
Q Consensus 86 vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~k~ie~~l~~~ 156 (161)
--.++ +. -..++++.+.++++|.++.+-...+.. . ++.. .....+-..++..|++||...
T Consensus 71 w~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~----~-~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 71 WGDPG----EP--TTVEWTFEELDDGRTFVTITESGFPGT----D-DEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred ecCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCCC----c-HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 53221 22 336888888754778887775533221 1 2111 112345567788888887643
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.54 E-value=0.0067 Score=43.68 Aligned_cols=100 Identities=14% Similarity=0.062 Sum_probs=58.5
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKST 85 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (161)
++.++.++||+++||+++. |... +.+|... ..+.+...| |..+ +.+|. +.=++..+++.. .+.|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~~-~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPGK-KIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCCC-EEEEE
Confidence 6778999999999999995 8776 6778753 334443333 3433 33332 334566677543 34444
Q ss_pred EEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEE
Q 031343 86 VFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHI 123 (161)
Q Consensus 86 vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~ 123 (161)
---.+. ... ..-..++.+.+. +++|.++.+-...+
T Consensus 67 w~~~~~-~~~-~~s~v~~~l~~~-~~gT~ltl~~~g~~ 101 (126)
T cd08892 67 WRFKSW-PEG-HYSTVTLTFTEK-DDETELKLTQTGVP 101 (126)
T ss_pred EEcCCC-CCC-CcEEEEEEEEEC-CCCEEEEEEEECCC
Confidence 321111 001 224578888886 56787776666443
No 43
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.26 E-value=0.037 Score=44.75 Aligned_cols=146 Identities=15% Similarity=0.075 Sum_probs=91.5
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCC-ccceEEEEEEec---CCceeeEEEEEEE--ecC
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDG-EAGSVKIMYFAE---GNKHTYAKQRIDV--LDK 77 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg-~~GsiR~~~~~~---g~~~~~~kErl~~--~D~ 77 (161)
..+..+..+++|++++|+++ .|... .++|.++ ..++++++--+ ..+ +-++.+.. -.+-..+..+-.. .+.
T Consensus 77 l~fk~e~~vd~s~~~v~dlL-~D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLL-SDPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred eEEEEEEEecCCHHHHHHHH-hCcch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCC
Confidence 45778888999999999999 59998 8999996 88999887422 222 23333321 1222333332222 233
Q ss_pred Cc-cEEEEEEEe--c----CCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHH
Q 031343 78 EK-FYCKSTVFE--E----DNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVE 150 (161)
Q Consensus 78 ~~-~~~~y~vie--g----~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie 150 (161)
.+ ..+..+-+. . .... ....+.+-..+.|.++++|.++.....+|.--.- - ..++.++-..+...++..+
T Consensus 153 ~~~~~I~~~SV~h~~~Pp~kgyV-R~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~-~-~~~~~~~~~~~~~~~~~~~ 229 (235)
T cd08873 153 GDPYKVAFRSVTLPRVPQTPGYS-RTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSY-V-TCNLAGLSALYCRTFHCCE 229 (235)
T ss_pred CCeEEEEEeeeecccCCCCCCeE-EEEEEeeeEEEEECCCCcEEEEEEEEcCCCccce-e-eecchhhhHHHHHHHHHHH
Confidence 22 233332222 1 0111 4678888999999988889998888888743211 1 2245556677788899999
Q ss_pred HHHhhC
Q 031343 151 AHLLAN 156 (161)
Q Consensus 151 ~~l~~~ 156 (161)
+||..|
T Consensus 230 ~~~~~~ 235 (235)
T cd08873 230 QFLVTN 235 (235)
T ss_pred HHhccC
Confidence 999764
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.23 E-value=0.0052 Score=44.91 Aligned_cols=120 Identities=21% Similarity=0.187 Sum_probs=65.0
Q ss_pred eccCHHHHHHHHhhCcccccccc-cCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCcc-EEEEEEEec
Q 031343 12 AAVAPSRMFKAFILDSHNLFPEL-FPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKF-YCKSTVFEE 89 (161)
Q Consensus 12 i~a~adkvW~~~~~d~~~llpk~-~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~-~~~y~vieg 89 (161)
++||+++||+++ .|... +.+| .+. ...+++..| |..+.+ .+. +.=++.++|+.+| .++++.-+.
T Consensus 1 f~ap~e~Vw~A~-Tdp~~-l~~w~~~~-~~~~d~~~G----G~f~~~---~~~----~~G~~~ev~pp~rlv~tw~~~~~ 66 (132)
T PTZ00220 1 FYVPPEVLYNAF-LDAYT-LTRLSLGS-PAEMDAKVG----GKFSLF---NGS----VEGEFTELEKPKKIVQKWRFRDW 66 (132)
T ss_pred CCCCHHHHHHHH-cCHHH-HHHHhcCC-CccccCCcC----CEEEEe---cCc----eEEEEEEEcCCCEEEEEEecCCC
Confidence 479999999999 48776 6777 432 222332222 333332 232 3336666776654 334444221
Q ss_pred CCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCC-CC--CCchHhHhhHHHHHHH-HHHHHHHHH
Q 031343 90 DNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGD-GE--SKLEEELKGSVELGTA-LFKAVEAHL 153 (161)
Q Consensus 90 ~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~-~~--~~~~~~~~~~~~~~~~-~~k~ie~~l 153 (161)
+. ..+ -..|+.+.|.++++|.++.+..-.+..+ .. .. .+.. .++-.. ++..|++||
T Consensus 67 ~~--~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~-~~~~---~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 67 EE--DVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGC-LERC---RNGWTQNFLDRFEKIL 126 (132)
T ss_pred CC--CCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCCCch-hhHH---HhChHHHHHHHHHHHh
Confidence 11 122 2488889997667888888877333221 11 11 1122 345455 588888776
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.64 E-value=0.24 Score=39.16 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=75.0
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEe-c--C--CceeeEEEEEEEecCCcc
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA-E--G--NKHTYAKQRIDVLDKEKF 80 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~-~--g--~~~~~~kErl~~~D~~~~ 80 (161)
+..+.++++|++++|+++ .|... .++|.++ ++++++++--+.--.|-++.+. + . .+-..+.-+-...+....
T Consensus 47 ~~ge~~v~as~~~v~~ll-~D~~~-r~~Wd~~-~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 47 FLGAGVIKAPLATVWKAV-KDPRT-RFLYDTM-IKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEEcCCHHHHHHHH-hCcch-hhhhHHh-hhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 456778999999999999 59998 8999994 9999988753311133333332 1 2 222333333322233333
Q ss_pred EEEEEEEecCCCC------cCceeEEEEEEEEec---CCCCCeEEEEEEEEEcCCCCCC
Q 031343 81 YCKSTVFEEDNML------DILESIVYEIKFEAS---GDGGTNCKTATEFHIKGDGESK 130 (161)
Q Consensus 81 ~~~y~vieg~~l~------~~~~~y~~ti~v~p~---~~~gs~v~W~~~y~~~~~~~~~ 130 (161)
.+.-+-+.-+.++ -....+.+-..++|. +++.|.++..+..+|.+++.|.
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 3332222221110 135567777888997 6778999999999998666554
No 46
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.28 E-value=0.26 Score=37.14 Aligned_cols=90 Identities=9% Similarity=0.150 Sum_probs=49.4
Q ss_pred CHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEEEEecCCCCc
Q 031343 15 APSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLD 94 (161)
Q Consensus 15 ~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~l~~ 94 (161)
..++||+-|.....+ -...+| .+.+|++++-. ...-.|.++|++ ..++|++...-+ .++.|....
T Consensus 19 Tr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg~----~~v~E~v~~~~~--~~V~f~~~~------ 83 (149)
T PF08982_consen 19 TREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFGG----ATVRERVTLYPP--ERVDFAQHD------ 83 (149)
T ss_dssp -HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEETT----EEEEEEEEEETT--TEEEESSSB------
T ss_pred CHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEECC----cEEEEEEEEeCC--cEEEEEcCC------
Confidence 346899988632222 234567 48999998665 345679999933 389999986433 355561111
Q ss_pred CceeEEEEEEEEecCCCCCeEEEEEEEEEc
Q 031343 95 ILESIVYEIKFEASGDGGTNCKTATEFHIK 124 (161)
Q Consensus 95 ~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~ 124 (161)
=++ .++.+... +.| .+-.++.|+-.
T Consensus 84 -Gs~--lt~~I~e~-~~g-~L~ltf~ye~~ 108 (149)
T PF08982_consen 84 -GSS--LTNIISEP-EPG-DLFLTFTYEWR 108 (149)
T ss_dssp -EEE--EEEEEEEE-ETT-EEEEEEEEEEE
T ss_pred -CCE--EEEEEecC-CCC-cEEEEEEEEec
Confidence 122 33334322 222 67777788764
No 47
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.15 E-value=0.46 Score=37.07 Aligned_cols=145 Identities=11% Similarity=0.064 Sum_probs=80.4
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcC-CCccceEEEEEEecC-Cc---eeeEEEEEEEecCCcc
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQG-DGEAGSVKIMYFAEG-NK---HTYAKQRIDVLDKEKF 80 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eG-dg~~GsiR~~~~~~g-~~---~~~~kErl~~~D~~~~ 80 (161)
+..+..+++||++++..+..|.+. .++|.+. +..+++++. |+..--+..+..... .+ -..+--|--..++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 566788999999999755457777 8999996 777776655 321111222221121 11 1222222222333333
Q ss_pred EEEEEEEecCCCC--c---CceeEEEEEEEEecCC--CCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHHHH
Q 031343 81 YCKSTVFEEDNML--D---ILESIVYEIKFEASGD--GGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVEAH 152 (161)
Q Consensus 81 ~~~y~vieg~~l~--~---~~~~y~~ti~v~p~~~--~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~ 152 (161)
.+...-++=+..+ . ....+.+.+.++|.++ ++|.++|.+..+|.|.- |. - .+.. +......+++.|.++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~-~-lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQ-Y-LVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cc-e-eeehhhHHHHHHHHHHHHHH
Confidence 3333223311110 1 2344556677888654 57999999999998743 22 1 2222 356667788888877
Q ss_pred Hhh
Q 031343 153 LLA 155 (161)
Q Consensus 153 l~~ 155 (161)
+..
T Consensus 205 ~~~ 207 (208)
T cd08868 205 IAT 207 (208)
T ss_pred Hhh
Confidence 753
No 48
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.14 E-value=0.47 Score=37.29 Aligned_cols=144 Identities=12% Similarity=0.032 Sum_probs=81.0
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCC-ccceEEEEEEe-cCC---ceeeEEEEEEEecCCc
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDG-EAGSVKIMYFA-EGN---KHTYAKQRIDVLDKEK 79 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg-~~GsiR~~~~~-~g~---~~~~~kErl~~~D~~~ 79 (161)
-+..+..+++|++++++.+..|... .++|.+. +.++++++--+ ..=-++.+... ++. +-..+.-|...-+..+
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 3567888999999999555447676 8999996 78877765532 11112222211 111 1123333333333333
Q ss_pred cEE-EEEEEecCCCC--c---CceeEEEEEEEEecCC--CCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHH
Q 031343 80 FYC-KSTVFEEDNML--D---ILESIVYEIKFEASGD--GGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVE 150 (161)
Q Consensus 80 ~~~-~y~vieg~~l~--~---~~~~y~~ti~v~p~~~--~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie 150 (161)
..+ ..++ +-+.++ . ....+.+-+.++|.++ +.|.++|.+..+|.|.- |. -.+.. +.+.....++.|.
T Consensus 128 ~~~~~~s~-~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i-P~--~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 128 CVLAGMAT-HFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL-PK--SIINQVLSQTQVDFANHLR 203 (209)
T ss_pred EEEEEEee-cCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC-CH--HHHHHHhHHhHHHHHHHHH
Confidence 222 2221 222111 0 2445556677888765 78999999999998864 32 22322 3566667777777
Q ss_pred HHHh
Q 031343 151 AHLL 154 (161)
Q Consensus 151 ~~l~ 154 (161)
+++.
T Consensus 204 ~~~~ 207 (209)
T cd08905 204 QRMA 207 (209)
T ss_pred HHHh
Confidence 6664
No 49
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.11 E-value=0.39 Score=35.88 Aligned_cols=143 Identities=12% Similarity=0.049 Sum_probs=79.2
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCce---eeEEEEEEEecCCcc
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKH---TYAKQRIDVLDKEKF 80 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~---~~~kErl~~~D~~~~ 80 (161)
..+..+.+++++++++|+++. |... .++|.|. +.++++++-.+..-.+....+....+. ..+--+-...++.+.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~-d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLM-DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHh-CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 346678889999999999995 8766 7899985 888888876432234444444322211 122222222233222
Q ss_pred -EEEEEEEecCCCC---cCc--eeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHH
Q 031343 81 -YCKSTVFEEDNML---DIL--ESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEA 151 (161)
Q Consensus 81 -~~~y~vieg~~l~---~~~--~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~ 151 (161)
.+...=++.+..+ ..+ ..+.+-+.++|.++++|.+++.+..++.+.. |. .-.-..+.+....+.|.+..
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i-P~-~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI-PK-SLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc-cH-HHHHhhhhhccHHHHHHHHH
Confidence 2222222221011 112 2224556778887789999999999998743 32 22222234444555555543
No 50
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.99 E-value=0.45 Score=35.61 Aligned_cols=113 Identities=10% Similarity=0.131 Sum_probs=65.2
Q ss_pred CHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEEEEe-cCCCC
Q 031343 15 APSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFE-EDNML 93 (161)
Q Consensus 15 ~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vie-g~~l~ 93 (161)
..+++|.-+.....+ -....|+ +.+|++++.++. -..|.++|+.. .++|++.. ....++.|.+-. |+.
T Consensus 18 Tr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt~--~~~~~v~f~~~~~g~~-- 86 (141)
T cd08863 18 TRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESGT-VLERELTFGPA----KIRETVTL--EPPSRVHFLQADAGGT-- 86 (141)
T ss_pred CHHHHHhHHHhhhCC-chhcccc-cceEEEEecCCC-EEEEEEEECCc----eEEEEEEe--cCCcEEEEEecCCCCe--
Confidence 457999988633332 2234664 899999987642 45699999875 68999985 334556677665 322
Q ss_pred cCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHH
Q 031343 94 DILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAV 149 (161)
Q Consensus 94 ~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~i 149 (161)
.++.+... ..| ..-.++.|+.......+ ++ .++..+....+++.-
T Consensus 87 -------l~~~iee~-~~g-~L~lrf~ye~~~p~~~~-~e-~~~~~~~~~~a~~~a 131 (141)
T cd08863 87 -------LTNTIEEP-EDG-ALYLRFVYETTLPEVAE-EE-AKAYQEIVKQAYKEA 131 (141)
T ss_pred -------EEEEeccC-CCC-cEEEEEEEEecCCCcCc-hH-HHHHHHHHHHHHHHH
Confidence 23333322 223 46777888774433222 22 233445555555443
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=95.69 E-value=0.9 Score=36.82 Aligned_cols=144 Identities=11% Similarity=-0.014 Sum_probs=78.7
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCC-ccceEEEEEEecC-Cc---eeeEEEEEEEecCCc
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDG-EAGSVKIMYFAEG-NK---HTYAKQRIDVLDKEK 79 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg-~~GsiR~~~~~~g-~~---~~~~kErl~~~D~~~ 79 (161)
.+..+..+++|++++++++ .|... .++|.++ +.++++++--+ .- .+.+++-.+- ++ -..+..+-..-+.++
T Consensus 82 ~fK~e~~vd~s~e~v~~lL-~D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLL-SDLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEEEEEcCCHHHHHHHH-hChhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 4567788999999999999 59998 8999996 88888876532 22 2454443221 11 122222211122222
Q ss_pred c---EEEEEEEecCCCC--c---CceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchH-hHhhHHHHHHHHHHHHH
Q 031343 80 F---YCKSTVFEEDNML--D---ILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEE-ELKGSVELGTALFKAVE 150 (161)
Q Consensus 80 ~---~~~y~vieg~~l~--~---~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~k~ie 150 (161)
. .+......=+-++ . ....+.+-..+.|.+++.|.+++...-+| +..|. -- +.-.........+.+-.
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G~LP~-~~~N~~~~~~p~~~~~~~~~ 234 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--GVLPY-ISTDIAGLSSEFYSTFSACS 234 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--ccccH-HHhhhhhhccchhHHHHHHH
Confidence 2 1222222211111 0 34556677888898778899887665555 33332 11 11112223345555556
Q ss_pred HHHhh
Q 031343 151 AHLLA 155 (161)
Q Consensus 151 ~~l~~ 155 (161)
+||.+
T Consensus 235 ~~~~~ 239 (240)
T cd08913 235 QFLLD 239 (240)
T ss_pred HHhhc
Confidence 66654
No 52
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.34 E-value=1.2 Score=36.05 Aligned_cols=145 Identities=10% Similarity=-0.050 Sum_probs=82.4
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEec---CCceeeEEEEEE--EecCC
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE---GNKHTYAKQRID--VLDKE 78 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~---g~~~~~~kErl~--~~D~~ 78 (161)
..+..+..+++|++++++++ .|... .++|.++ ..++++++--+.---|..+.-.+ -.+-..+..+-. ..++.
T Consensus 78 l~fk~e~~vdvs~~~l~~LL-~D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLL-SDFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHH-hChhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 45778889999999999999 59998 8999996 88888876532111266654222 111122222211 12122
Q ss_pred c-cEEE-EEEEecC-CCCc---Ccee-EEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHH
Q 031343 79 K-FYCK-STVFEED-NMLD---ILES-IVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEA 151 (161)
Q Consensus 79 ~-~~~~-y~vieg~-~l~~---~~~~-y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~ 151 (161)
+ ..+. .++-.-- +... ...+ +.+- .+.|.++++|.++....-+| +..|.-..++.++...+...++.-.+
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP--g~lp~~~~n~~~~~~~~~~~~~~~~~ 231 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA--SILPYFAGNLGGWSKSIEETAASCIQ 231 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC--ccchheEEecchhhhHHHHHHHHHHH
Confidence 2 2222 2332200 0000 3455 3444 78898888999999998888 33322122454445555555666666
Q ss_pred HHh
Q 031343 152 HLL 154 (161)
Q Consensus 152 ~l~ 154 (161)
||.
T Consensus 232 ~~~ 234 (236)
T cd08914 232 FLE 234 (236)
T ss_pred HHh
Confidence 664
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.16 E-value=1.2 Score=34.96 Aligned_cols=144 Identities=5% Similarity=-0.032 Sum_probs=78.3
Q ss_pred EEEEEEeccCHHHHHHHHhhCccc-ccccccCcceeeEEEEcC-CCccceEEEEEEec--C---CceeeEEEE-EEEecC
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHN-LFPELFPQAFKSVVYEQG-DGEAGSVKIMYFAE--G---NKHTYAKQR-IDVLDK 77 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~-llpk~~P~~v~s~e~~eG-dg~~GsiR~~~~~~--g---~~~~~~kEr-l~~~D~ 77 (161)
+..+..++++++++++.+ .|..+ .-++|.+. +.++++++- |+...-++ +..+. + .+-..+--| ....++
T Consensus 48 ~k~e~~i~~s~~~~~~~l-~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~-~~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCL-KPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCR-TVTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHH-Hhccchhhhhhhhc-cccEEEEEEecCCEEEEE-EecchhcCCCcCCCceEEEEEEEecCC
Confidence 567888999999999998 47654 23799985 888888766 32222122 22221 1 111222222 222334
Q ss_pred CccEEEEEEEecCCCC--cC-cee----EEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHH
Q 031343 78 EKFYCKSTVFEEDNML--DI-LES----IVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVE 150 (161)
Q Consensus 78 ~~~~~~y~vieg~~l~--~~-~~~----y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie 150 (161)
..-.+.+...+-+.++ .+ +.- +..-++..|.++++|.++|.+..+|.+.- |. .-.-++..+....+++.|.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i-P~-~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL-PQ-TVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc-CH-HHHHHHhhHHHHHHHHHHH
Confidence 3334444333332211 01 111 23344445545678999999999997643 33 2222223466667777777
Q ss_pred HHHh
Q 031343 151 AHLL 154 (161)
Q Consensus 151 ~~l~ 154 (161)
+++.
T Consensus 203 ~~~~ 206 (208)
T cd08903 203 KAVK 206 (208)
T ss_pred HHHh
Confidence 7764
No 54
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.15 E-value=0.98 Score=33.90 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=73.0
Q ss_pred EEEEEEeccCHHHHHHHHhhCccc---ccccccC--cceeeEEEEcCCCccceEEEE-EEec-CCc--------e-eeE-
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHN---LFPELFP--QAFKSVVYEQGDGEAGSVKIM-YFAE-GNK--------H-TYA- 68 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~---llpk~~P--~~v~s~e~~eGdg~~GsiR~~-~~~~-g~~--------~-~~~- 68 (161)
++.++++++|+|+||++|. |..- .+...-. ..+.+.+ .+|+| -+++.. .+.. ..| - -.+
T Consensus 1 f~~~~~~~~~~~~v~~~~~-d~~y~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFT-DEDYWEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred CeEEEEcCCCHHHHHHHHc-CHHHHHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 4678899999999999995 6542 1211111 1244444 34444 112111 1221 111 0 111
Q ss_pred -EEEEEEecCCccEEEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEE-cCCCCCCchHhHhhHHHHHHHHH
Q 031343 69 -KQRIDVLDKEKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHI-KGDGESKLEEELKGSVELGTALF 146 (161)
Q Consensus 69 -kErl~~~D~~~~~~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~ 146 (161)
.|+....++..++.+|++--.+. --+.++++.+.|. +++|.+.++.+... ++-....+|.. +.+.+...+
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~~-~~gt~~~~~g~v~v~VPlvGgkiE~~---v~~~~~~~~ 148 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRPD-GGGTRLTVEGEVKVKVPLVGGKIEKA---VAENLRKLL 148 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEecC-CCCEEEEEEEEEEEEEccccHHHHHH---HHHHHHHHH
Confidence 23333346778888887643332 3478899999995 56899999999977 44332221222 344444544
Q ss_pred HHHHHH
Q 031343 147 KAVEAH 152 (161)
Q Consensus 147 k~ie~~ 152 (161)
..-.++
T Consensus 149 ~~e~~~ 154 (159)
T PF10698_consen 149 EAEQEF 154 (159)
T ss_pred HHHHHH
Confidence 444443
No 55
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=94.96 E-value=1.4 Score=34.56 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=81.9
Q ss_pred EEEEEEEEe-ccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccce-EEEEEEecCCce---eeEEEEEEEecCC
Q 031343 4 LRFDKDGSA-AVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGS-VKIMYFAEGNKH---TYAKQRIDVLDKE 78 (161)
Q Consensus 4 ~~~~~ev~i-~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~Gs-iR~~~~~~g~~~---~~~kErl~~~D~~ 78 (161)
..+..+.++ ++|++.+.+++ .|... .++|.+. +.+.++++-+...|+ |-.+.+..--|+ .++-.|-...|++
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 121 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQ-LDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEE 121 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCC
Confidence 345666666 99999999998 48876 8999996 677788775432222 222222211111 3555555556666
Q ss_pred ccEE--EEEEEec------CCCCcCceeEEEEEEEEecC---CCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHH
Q 031343 79 KFYC--KSTVFEE------DNMLDILESIVYEIKFEASG---DGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALF 146 (161)
Q Consensus 79 ~~~~--~y~vieg------~~l~~~~~~y~~ti~v~p~~---~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~ 146 (161)
+..+ ...-++- .... .+.+|.+.+.+.|.+ ++||.+.++..-+|.+ +.| .-.++. +....-.++
T Consensus 122 ~~~~~i~~~sv~hp~~P~~~g~V-Rv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG-~IP--~~lvN~~~~~~~~~~l 197 (207)
T cd08911 122 NKLIVIVSKAVQHPSYPESPKKV-RVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV-NIP--SYITSWVAMSGMPDFL 197 (207)
T ss_pred CCEEEEEEecCCCCCCCCCCCCE-EEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC-ccC--HHHHHHHHHhhccHHH
Confidence 5432 1111221 1111 577888999999873 4577776544433333 333 222222 455666777
Q ss_pred HHHHHHHh
Q 031343 147 KAVEAHLL 154 (161)
Q Consensus 147 k~ie~~l~ 154 (161)
+.|...++
T Consensus 198 ~~l~~a~~ 205 (207)
T cd08911 198 ERLRNAAL 205 (207)
T ss_pred HHHHHHHh
Confidence 77776654
No 56
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=94.94 E-value=1.4 Score=34.65 Aligned_cols=143 Identities=8% Similarity=-0.030 Sum_probs=77.9
Q ss_pred EEEEEEEeccCHHHHH-HHHhhCcccccccccCcceeeEEEEcCCCccceE-EEEEEec-CCc---eeeEEEEEEEecCC
Q 031343 5 RFDKDGSAAVAPSRMF-KAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSV-KIMYFAE-GNK---HTYAKQRIDVLDKE 78 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW-~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~Gsi-R~~~~~~-g~~---~~~~kErl~~~D~~ 78 (161)
.+..+..+++|++++| +++ .|... .++|.+. +.++++++--+.-=.| +.++... +++ -..+.-|--.-+..
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll-~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVI-LQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 4677888999999998 566 59888 8999996 8888887553211111 2222221 112 13333333333333
Q ss_pred c-cEEEEEEEecCCCCcCceeEE-EE-----EEEEe--cCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHH
Q 031343 79 K-FYCKSTVFEEDNMLDILESIV-YE-----IKFEA--SGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAV 149 (161)
Q Consensus 79 ~-~~~~y~vieg~~l~~~~~~y~-~t-----i~v~p--~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~i 149 (161)
+ -.+..++.- +.++ +.+.|. ++ .-+.| .++++|.++|.+..+|.|.- |. --.-..+.+.....++.|
T Consensus 127 ~~i~~~~sv~~-~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l-P~-~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 127 RYVSAGISTTH-SHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL-PR-YLIHQSLAATMFEFASHL 202 (209)
T ss_pred cEEEEEEEEec-CCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC-CH-HHHHHHHHHHHHHHHHHH
Confidence 3 223333322 2211 222221 22 33344 45678999999999999843 32 211222455556667766
Q ss_pred HHHHh
Q 031343 150 EAHLL 154 (161)
Q Consensus 150 e~~l~ 154 (161)
.+++.
T Consensus 203 R~~~~ 207 (209)
T cd08906 203 RQRIR 207 (209)
T ss_pred HHHHh
Confidence 66653
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=94.82 E-value=1.5 Score=34.44 Aligned_cols=144 Identities=9% Similarity=0.035 Sum_probs=77.4
Q ss_pred EEEEEEEe-ccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecC---CceeeEEEEEEEecCCcc
Q 031343 5 RFDKDGSA-AVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEG---NKHTYAKQRIDVLDKEKF 80 (161)
Q Consensus 5 ~~~~ev~i-~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g---~~~~~~kErl~~~D~~~~ 80 (161)
.+..+..+ ++|++.+++++ .|... .++|.|. +..+++++--+.--.|.+..+..- .+-..+--|...-++...
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l-~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~ 124 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVL-HDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEY 124 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHH-HChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEE
Confidence 34556666 69999999998 48765 7899996 556666554221123333333211 111233333332333222
Q ss_pred EE-EEEEEecCCC--Cc---CceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHHHHH
Q 031343 81 YC-KSTVFEEDNM--LD---ILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVEAHL 153 (161)
Q Consensus 81 ~~-~y~vieg~~l--~~---~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 153 (161)
.+ ..++ .-+.. .. ....+.+-+.++|.++++|.++|.+..++.+.. | .-.++. +......+++.|.+.+
T Consensus 125 vi~~~sv-~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~I-P--~~lvN~~~~~~~~~~l~~l~k~~ 200 (222)
T cd08871 125 IIFNHSV-KHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSL-P--KWVVNKATTKLAPKVMKKLHKAA 200 (222)
T ss_pred EEEeccc-cCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCc-C--HHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 2222 11111 01 223455667788987788999999998888753 3 222222 3344456666666555
Q ss_pred hh
Q 031343 154 LA 155 (161)
Q Consensus 154 ~~ 155 (161)
..
T Consensus 201 ~~ 202 (222)
T cd08871 201 LK 202 (222)
T ss_pred HH
Confidence 44
No 58
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.78 E-value=1.5 Score=34.25 Aligned_cols=147 Identities=11% Similarity=0.048 Sum_probs=82.1
Q ss_pred cEEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEe---cCCceeeEE--EEEEEecC
Q 031343 3 VLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFA---EGNKHTYAK--QRIDVLDK 77 (161)
Q Consensus 3 ~~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~---~g~~~~~~k--Erl~~~D~ 77 (161)
...+..+-.+++|++.+.+++. |.. +.++|.|.. ...+.++..+.--.+-.+.+. +-+.-..+- -.++.+|+
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~-d~~-~~~~W~p~~-~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~ 121 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLN-EVE-LYKTWVPFC-IRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEE 121 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEe-hhh-hHhhhcccc-eeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeecc
Confidence 3467778889999999999984 875 599999974 444445443221222222221 111101111 12233333
Q ss_pred CccE-EEEEEEecCC---------CCc------CceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHH
Q 031343 78 EKFY-CKSTVFEEDN---------MLD------ILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVE 140 (161)
Q Consensus 78 ~~~~-~~y~vieg~~---------l~~------~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~ 140 (161)
.+.. +.-.-+..+. ++. ....+.+-+.++|-+++.|.++..+..+|.+...|. - .+.. +++
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~-~-liN~~~k~ 199 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK-S-LLNFVARK 199 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH-H-HHHHHHHH
Confidence 3321 1112121100 110 246677778889988889999999998888764443 2 2322 456
Q ss_pred HHHHHHHHHHHHHh
Q 031343 141 LGTALFKAVEAHLL 154 (161)
Q Consensus 141 ~~~~~~k~ie~~l~ 154 (161)
....+++.|.+-+.
T Consensus 200 ~~~~~~~~l~k~~~ 213 (215)
T cd08877 200 FAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHh
Confidence 66677777776543
No 59
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=94.73 E-value=1.6 Score=34.16 Aligned_cols=145 Identities=12% Similarity=0.095 Sum_probs=83.0
Q ss_pred EEEEEEEEe-ccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccce-EEEEEE--e-cCCceeeEEEEEEEec-C
Q 031343 4 LRFDKDGSA-AVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGS-VKIMYF--A-EGNKHTYAKQRIDVLD-K 77 (161)
Q Consensus 4 ~~~~~ev~i-~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~Gs-iR~~~~--~-~g~~~~~~kErl~~~D-~ 77 (161)
..+..+.++ ++|++.+++++ .|... .++|.+. +...++++-++..|+ |-.+.+ + +-.+-.++-.|-.-.| +
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 126 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFY-WDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDD 126 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHH-cChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCC
Confidence 346667778 67999999998 58776 8999996 666666655432122 112221 1 1111134443433334 3
Q ss_pred CccEEEEEEEecCCCC----cCceeEEEEEEEEec--CCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHH
Q 031343 78 EKFYCKSTVFEEDNML----DILESIVYEIKFEAS--GDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVE 150 (161)
Q Consensus 78 ~~~~~~y~vieg~~l~----~~~~~y~~ti~v~p~--~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie 150 (161)
....+....+.-+..+ -.+..|.+.+.+.|. ++++|.+..+.--.|.+ ..| .-.++. +..++..+++.|.
T Consensus 127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G-~IP--~wlvN~~~~~~~~~~l~~l~ 203 (209)
T cd08870 127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDG-GIP--RELAKLAVKRGMPGFLKKLE 203 (209)
T ss_pred CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCC-CCC--HHHHHHHHHhhhHHHHHHHH
Confidence 3333333222221111 157889999999998 56778888877777644 333 223332 4556667788877
Q ss_pred HHHh
Q 031343 151 AHLL 154 (161)
Q Consensus 151 ~~l~ 154 (161)
+.+.
T Consensus 204 ~a~~ 207 (209)
T cd08870 204 NALR 207 (209)
T ss_pred HHHh
Confidence 7664
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=92.32 E-value=4 Score=31.17 Aligned_cols=147 Identities=10% Similarity=-0.054 Sum_probs=82.5
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecC-Cce---eeEEEEEEEe-cCC
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEG-NKH---TYAKQRIDVL-DKE 78 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g-~~~---~~~kErl~~~-D~~ 78 (161)
..+..+..++++++++...+..|... .++|.+. +..+++++--..-..|.++....- ++. .++--|--.. .+.
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 45667788999999866543357776 8999996 777777654211134555443211 121 2222222222 233
Q ss_pred ccEEEEEEEecCCCC--c---CceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHHHHH
Q 031343 79 KFYCKSTVFEEDNML--D---ILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAVEAH 152 (161)
Q Consensus 79 ~~~~~y~vieg~~l~--~---~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~ 152 (161)
...+...-++.+..+ . ....+.+-+.++|.+++.|.++|....++.+.. |. - .++. +......+++.+-++
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i-P~-~-lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL-PH-W-LVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc-cc-e-eehhhhhhhHHHHHHHHHHH
Confidence 334444333322110 0 234567778889987778999999999998753 32 1 2222 345556666666666
Q ss_pred Hhh
Q 031343 153 LLA 155 (161)
Q Consensus 153 l~~ 155 (161)
|..
T Consensus 200 ~~~ 202 (206)
T smart00234 200 LQK 202 (206)
T ss_pred HHH
Confidence 543
No 61
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=89.13 E-value=8.9 Score=29.69 Aligned_cols=143 Identities=5% Similarity=-0.069 Sum_probs=75.7
Q ss_pred EEEEEEeccCHHHHHHHHhhC--cccccccccCcceeeEEEEcCCCccceEEEEEEec--CC---ceeeE-EEEEEEecC
Q 031343 6 FDKDGSAAVAPSRMFKAFILD--SHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE--GN---KHTYA-KQRIDVLDK 77 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d--~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~--g~---~~~~~-kErl~~~D~ 77 (161)
+..+..++++++++.+.+. | ... .++|-+. +..+++++.-+..=.|.+..++. .+ +-..+ .+....+++
T Consensus 48 ~k~~~~i~~~~~~v~~~l~-d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~ 124 (206)
T cd08867 48 YRAEGIVDALPEKVIDVII-PPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED 124 (206)
T ss_pred EEEEEEEcCCHHHHHHHHH-hcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence 6778889999999999984 7 454 6899986 88888887633111122222211 11 11121 111122333
Q ss_pred CccEEEEEEEecCCCC--cC---ceeEEEEEEEEecC--CCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHH
Q 031343 78 EKFYCKSTVFEEDNML--DI---LESIVYEIKFEASG--DGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVE 150 (161)
Q Consensus 78 ~~~~~~y~vieg~~l~--~~---~~~y~~ti~v~p~~--~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie 150 (161)
....+...-++=+..+ .+ ...+.+-+-+.|.+ +++|.++|.+..+|.|.. |. --.-..+.+.....++.|.
T Consensus 125 ~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i-P~-~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 125 NQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI-PQ-SLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred CeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC-cH-HHHHhhhhhhHHHHHHHHH
Confidence 3222332223212111 01 12222333456643 357999999999998754 22 2122234556667777777
Q ss_pred HHH
Q 031343 151 AHL 153 (161)
Q Consensus 151 ~~l 153 (161)
+|+
T Consensus 203 ~~~ 205 (206)
T cd08867 203 KGV 205 (206)
T ss_pred Hhc
Confidence 665
No 62
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=87.59 E-value=11 Score=29.09 Aligned_cols=118 Identities=12% Similarity=0.057 Sum_probs=68.5
Q ss_pred EEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEec---CCceeeEEEEEEEecCCc--
Q 031343 5 RFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAE---GNKHTYAKQRIDVLDKEK-- 79 (161)
Q Consensus 5 ~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~---g~~~~~~kErl~~~D~~~-- 79 (161)
-+..+..++++++++++.+. |. -++|.+. +.++++++--+.-=.|-+..+.. -.+-..+--|.-..|..+
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~-d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRIL-RE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHH-HH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 35778899999999999874 53 4799996 77777765422111122222221 112234444444433333
Q ss_pred cEEEEEEEec--CCCCc--CceeEEEEEEEEecCCCCCeEEEEEEEEEcCCC
Q 031343 80 FYCKSTVFEE--DNMLD--ILESIVYEIKFEASGDGGTNCKTATEFHIKGDG 127 (161)
Q Consensus 80 ~~~~y~vieg--~~l~~--~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~ 127 (161)
..+...-++- ..... ....+.+-+-++|.++++|.+++.+..+|.|..
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence 3333322321 11001 234556777889987789999999999998754
No 63
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=85.30 E-value=14 Score=27.74 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=82.3
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCC-ccceEEEEEEe-cCCc--eeeEEEEEEE--ecC
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDG-EAGSVKIMYFA-EGNK--HTYAKQRIDV--LDK 77 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg-~~GsiR~~~~~-~g~~--~~~~kErl~~--~D~ 77 (161)
+++.....|++|.+-||+-.. ..++ |..+-|... +-+-+|+- +.|+-..+.+. -|.| .+| +-|+++ +|+
T Consensus 2 ~tF~~~~~i~aP~E~VWafhs-rpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW-~Arhte~~~d~ 76 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHS-RPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTW-VARHTESGFDN 76 (153)
T ss_pred cceEEeeEecCCHHHHhhhhc-CccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceE-EEEeeecccCC
Confidence 567888899999999999974 6666 667788633 33334532 44554443322 2222 234 556665 544
Q ss_pred CccEEEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchH-hHhhHHHHHHHHHHHHHHHH
Q 031343 78 EKFYCKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEE-ELKGSVELGTALFKAVEAHL 153 (161)
Q Consensus 78 ~~~~~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~k~ie~~l 153 (161)
- +.++=..|.|+. +--...-+-+|.+. +|++++.=++.|++..+... +- ..+..+-....||+.-+.-+
T Consensus 77 ~-~~FtDv~i~gPf---p~~~WrHtH~F~~e-gg~TvliD~Vsye~p~g~~~--~~~g~~l~q~~l~~mFr~Rhs~l 146 (153)
T COG4276 77 G-SRFTDVCITGPF---PALNWRHTHNFVDE-GGGTVLIDSVSYELPAGTLT--GMFGYRLTQLILDLMFRSRHSTL 146 (153)
T ss_pred c-ceeeeeeecCCc---cceeeEEEeeeecC-CCcEEEEeeEEeeccCccee--chhhhhhHHHHHHHHHHHHHHHH
Confidence 3 344455666654 22247888899987 46899999999998665211 11 12223444567776655433
No 64
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=83.53 E-value=21 Score=28.59 Aligned_cols=143 Identities=6% Similarity=-0.004 Sum_probs=78.6
Q ss_pred EEEEEEEec-cCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccce-EEEEEEe---cCCceeeEE-EEEEEecCC
Q 031343 5 RFDKDGSAA-VAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGS-VKIMYFA---EGNKHTYAK-QRIDVLDKE 78 (161)
Q Consensus 5 ~~~~ev~i~-a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~Gs-iR~~~~~---~g~~~~~~k-Erl~~~D~~ 78 (161)
.+..+..++ ++++.+.+.| .|... .++|... +.+.++++--+ .++ |-+..+. +-.+-..+- -++...|+.
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l-~D~~~-r~~Wd~~-~~~~~vie~l~-~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~ 128 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYF-FDPDV-RMDWETT-LENFHVVETLS-QDTLIFHQTHKRVWPAAQRDALFVSHIRKIPAL 128 (235)
T ss_pred eEEEEEEECCCCHHHHHHHH-hChhh-HHHHHhh-hheeEEEEecC-CCCEEEEEEccCCCCCCCcEEEEEEEEEecCcc
Confidence 467777787 9999999998 49887 8899985 77777765422 112 2222211 111111221 122223332
Q ss_pred c--------cEEEEEEEecCCCCcCceeEEEEE-----------------EEEecCCCCCeEEEEEEEEEcCCCCCCchH
Q 031343 79 K--------FYCKSTVFEEDNMLDILESIVYEI-----------------KFEASGDGGTNCKTATEFHIKGDGESKLEE 133 (161)
Q Consensus 79 ~--------~~~~y~vieg~~l~~~~~~y~~ti-----------------~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~ 133 (161)
. -.+..++.-.. .+..-...++.. .++| ++++|.+++.+..+|.|.. |. -
T Consensus 129 ~~~~~~~~~vii~~Sv~h~~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~i-P~-w- 203 (235)
T cd08872 129 EEPNAHDTWIVCNFSVDHDS-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWA-PA-S- 203 (235)
T ss_pred ccccCCCeEEEEEecccCcc-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCc-cH-H-
Confidence 1 22444443222 111112223332 1234 3567888888888887744 32 2
Q ss_pred hHhh-HHHHHHHHHHHHHHHHhhC
Q 031343 134 ELKG-SVELGTALFKAVEAHLLAN 156 (161)
Q Consensus 134 ~~~~-~~~~~~~~~k~ie~~l~~~ 156 (161)
.++. ++..+-+++|.+.+|++.+
T Consensus 204 vvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 204 VLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHh
Confidence 3332 5667789999999999875
No 65
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=77.63 E-value=28 Score=26.30 Aligned_cols=147 Identities=11% Similarity=0.076 Sum_probs=88.6
Q ss_pred cEEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCC--ce---eeEEEEEEE-ec
Q 031343 3 VLRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGN--KH---TYAKQRIDV-LD 76 (161)
Q Consensus 3 ~~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~--~~---~~~kErl~~-~D 76 (161)
...+..+..++++++++...+. +... .|-+. +.++++++--..-..|..+.+..-. |. ..+--|... ..
T Consensus 45 ~~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~ 119 (206)
T PF01852_consen 45 IKMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDE 119 (206)
T ss_dssp CEEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECT
T ss_pred ceEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEec
Confidence 3456778889999998888885 4333 89986 7788887662112456655544322 32 222222222 24
Q ss_pred CCccEEEEEEEecCCCC----c--CceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHHHH
Q 031343 77 KEKFYCKSTVFEEDNML----D--ILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFKAV 149 (161)
Q Consensus 77 ~~~~~~~y~vieg~~l~----~--~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k~i 149 (161)
+....+..+=++.+... . ....+.+.+.++|.+++.|.+++...-++.+.. | .-..+. +......+++.+
T Consensus 120 ~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i-P--~~~~n~~~~~~~~~~~~~~ 196 (206)
T PF01852_consen 120 DGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI-P--SWLVNMVVKSQPPNFLKNL 196 (206)
T ss_dssp TSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS-H--HHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC-h--HHHHHHHHHHhHHHHHHHH
Confidence 44455555333333211 1 234666778899998877999999888887743 2 233333 455566778888
Q ss_pred HHHHhhCC
Q 031343 150 EAHLLANP 157 (161)
Q Consensus 150 e~~l~~~p 157 (161)
-++|..++
T Consensus 197 ~~~~~~~~ 204 (206)
T PF01852_consen 197 RKALKKQK 204 (206)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHhc
Confidence 87877765
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=75.46 E-value=37 Score=26.51 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=77.8
Q ss_pred EEEEEEEEec-cCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecC---CceeeE--EEEEEEecC
Q 031343 4 LRFDKDGSAA-VAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEG---NKHTYA--KQRIDVLDK 77 (161)
Q Consensus 4 ~~~~~ev~i~-a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g---~~~~~~--kErl~~~D~ 77 (161)
..+..+..++ ++++.+.+++ .|... .++|.+... ++.-...++. .|-.+.+..- .+-.++ +.+ ..+|.
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~~~-~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~-~~~~~ 122 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVY-MDLEY-RKQWDQYVK-ELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQR-RDLDV 122 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHHHHH-hheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEe-ccccC
Confidence 3466677887 7999999998 59887 889999644 3321222221 2333333211 111222 222 23444
Q ss_pred CccEEEE---EEEecC------CCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhh-HHHHHHHHHH
Q 031343 78 EKFYCKS---TVFEED------NMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKG-SVELGTALFK 147 (161)
Q Consensus 78 ~~~~~~y---~vieg~------~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~k 147 (161)
.+..+-. ...+=+ ... ....|.+.+.++|.++++|.+.....-+|.+.. | .-..+. +......+++
T Consensus 123 ~~~~~~iv~~~s~~~p~~P~~~~~V-Rv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~I-P--~wlvN~~~~~~~~~~l~ 198 (207)
T cd08910 123 EGRKIWVILARSTSLPQLPEKPGVI-RVKQYKQSLAIESDGKKGSKVFMYYFDNPGGMI-P--SWLINWAAKNGVPNFLK 198 (207)
T ss_pred CCCeEEEEEecCCCCCCCCCCCCCE-EEEEEEEEEEEEeCCCCceEEEEEEEeCCCCcc-h--HHHHHHHHHHhhHHHHH
Confidence 4432111 111111 111 477888999999987778888888777775533 3 223332 4556667777
Q ss_pred HHHHHHh
Q 031343 148 AVEAHLL 154 (161)
Q Consensus 148 ~ie~~l~ 154 (161)
.|...++
T Consensus 199 ~l~ka~~ 205 (207)
T cd08910 199 DMQKACQ 205 (207)
T ss_pred HHHHHHh
Confidence 7766553
No 67
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=62.83 E-value=74 Score=25.06 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=67.7
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcC-CCccceEEEEEEe-----cCCceeeEEEEEEEecC
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQG-DGEAGSVKIMYFA-----EGNKHTYAKQRIDVLDK 77 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eG-dg~~GsiR~~~~~-----~g~~~~~~kErl~~~D~ 77 (161)
-.+..+++++++++++...+. |- .++|.+. +....+++- +.. ...+.+. +-..-..+..|.-..|.
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~~---~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~ 123 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDSQ---TEIYQYVQNSMAPHPARDYVVLRTWRTNL 123 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCCC---ceEEEEEccCCCCCCCcEEEEEEEEEEeC
Confidence 357788999999999999985 54 5789986 555555544 221 1212221 11112444554444444
Q ss_pred CccEEEEEEE--ecCCCC---cCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCC
Q 031343 78 EKFYCKSTVF--EEDNML---DILESIVYEIKFEASGDGGTNCKTATEFHIKGDG 127 (161)
Q Consensus 78 ~~~~~~y~vi--eg~~l~---~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~ 127 (161)
.+..+.-... +-+.++ -....+.+..-++|.++|+|.++..+..+|.|..
T Consensus 124 ~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 124 PKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred CCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence 4433322222 111110 1344556677889988889999999999997754
No 68
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=54.07 E-value=66 Score=22.93 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=54.3
Q ss_pred EEEEEeccCHHHHHHHHhhCcc-cccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEE
Q 031343 7 DKDGSAAVAPSRMFKAFILDSH-NLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKST 85 (161)
Q Consensus 7 ~~ev~i~a~adkvW~~~~~d~~-~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (161)
..+.++++||+.+++.+. +.- .=+.+.-...+..-++ +| .--.=++..+. .++=+|+.+. .++.|.++
T Consensus 2 kI~~~l~v~a~~ff~~l~-~s~~~DI~~~tgk~~~~~~L-~G-----~~Y~K~~~~~~---~~~v~It~~~-~~~~Y~~~ 70 (120)
T PF11687_consen 2 KISKTLNVSAEEFFDYLI-DSLLYDIKQATGKKLPVKQL-KG-----FSYQKKFKNKR---EAKVKITEYE-PNKRYAAT 70 (120)
T ss_pred eEEEEecCCHHHHHHHHH-HHHHHHHHHHcCCCCChhhc-CC-----cEEEEEcCCCC---EEEEEEEEEc-CCCEEEEE
Confidence 356779999999999986 221 1011111111111111 22 11111222222 3333466554 35556666
Q ss_pred EEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcC
Q 031343 86 VFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKG 125 (161)
Q Consensus 86 vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~ 125 (161)
.-. +...+..+-++.|.++|.|.|+-+=++.+.+
T Consensus 71 ~~s------~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 71 FSS------SRGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEe------cCCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 642 3445777788889877778877776666554
No 69
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=53.60 E-value=25 Score=28.78 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=28.8
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++..+.... ++..++..+....+.+.+|+.+.++|+-|
T Consensus 238 ~~~i~~~~~~~~~~~-~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 238 YFKVIVHPQLKFEQT-GDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred eEEEEEcCCCCCCCC-CChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 466677654332222 22222345677899999999999999976
No 70
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=50.15 E-value=96 Score=24.90 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=63.4
Q ss_pred EEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEE--ecCCceeeEEEEEEEecCCccEEEEEEE
Q 031343 10 GSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYF--AEGNKHTYAKQRIDVLDKEKFYCKSTVF 87 (161)
Q Consensus 10 v~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~--~~g~~~~~~kErl~~~D~~~~~~~y~vi 87 (161)
.-+..+++.++++++ +-.+ ..+..| ..++.++..-+-.-+.+-.+.. ++=. +...-++. +++-.++.+ ..-
T Consensus 74 rligysp~~my~vVS-~V~~-Y~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l~--E~y~S~Vt-~~~p~l~kt-~~~ 146 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVS-NVSE-YHEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPLD--ERYTSNVT-CVKPHLTKT-VCA 146 (227)
T ss_pred hhhCCCHHHHHHHHH-hHHH-hhcccc-ceeccceeecCCCCCceeeEEecCcccc--hhheeeeE-EecccceEE-eec
Confidence 457899999999985 5554 566677 4666665544311234444443 2111 12233333 445544442 223
Q ss_pred ecCCCCcCceeEEEEEEEEecC--CCCCeEEEEEEEEEcC
Q 031343 88 EEDNMLDILESIVYEIKFEASG--DGGTNCKTATEFHIKG 125 (161)
Q Consensus 88 eg~~l~~~~~~y~~ti~v~p~~--~~gs~v~W~~~y~~~~ 125 (161)
+|.+ +......++|.|+. .+.|.+...+.|+-..
T Consensus 147 d~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 147 DGRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred cccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 4433 66667789999988 5789999999998765
No 71
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=47.05 E-value=1.2e+02 Score=22.58 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=59.6
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEE
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKST 85 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (161)
++.++..+-+.+.+-.+|+ |+.-+||+++|. ++++. .+++-=-+-.+ | +. ....-+-=.-+-..+=+|.+.
T Consensus 3 ~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p~-ik~v~-~~~~sF~~~g~---~--~~-~~~~~~G~vy~s~~~ItYvf~ 73 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTILS-DPEFVLPRLFPP-IKSVK-VEENSFRAEGK---F--GG-FPFEMKGNVYVSSNEITYVFN 73 (136)
T ss_dssp EEEEEE-SS-HHHHHHHHT--HHHHHHHHSTT-EEEEE--STTEEEEEEE---E--TT-EEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEeccCCChHheEEEec-CCccEecccCCc-eEEEE-ecCCEEEEEEE---E--ee-EEEEEEEEEEEccceEEEEEE
Confidence 4567777888999999996 999999999994 88998 44531111122 1 10 111111112233345566677
Q ss_pred EEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHH
Q 031343 86 VFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAH 152 (161)
Q Consensus 86 vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~ 152 (161)
+-.|+. ..+=+-++++.+ + .++..++|+ +..+.- . -........++.+.+|+-
T Consensus 74 ~~~g~~----~g~GkL~i~~~~---~--~i~l~~eye--g~~e~~-~--~~~i~~~i~~f~~~ldE~ 126 (136)
T PF11485_consen 74 LAGGGP----NGNGKLTIQLEN---G--KIKLIFEYE--GWMESL-S--GFFISKWIEKFKKNLDEE 126 (136)
T ss_dssp ----ET----TEEEEEEEEEET---T--EEEEEEEES---HHHHH-H--HHHHHHHHHHHHHHHHHH
T ss_pred eeccCC----CCcEEEEEEecC---C--EEEEEEEcc--cchHhh-h--HHHHHHHHHHHHhhhhHH
Confidence 776644 233334445422 2 566666664 321111 1 111344555666666654
No 72
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=45.52 E-value=36 Score=28.11 Aligned_cols=44 Identities=14% Similarity=0.075 Sum_probs=28.7
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++.-+.... ++...+..+....+.+.+|+.+.++|+-|
T Consensus 257 ~y~i~~~~~~~~~~~-~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 257 RFRLELTERVELPRD-ADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred eEEEEEecCCCCCCC-CCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 477777664332211 11111236778899999999999999975
No 73
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=42.34 E-value=45 Score=27.45 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=28.0
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.|.+.+++..+..+ +++. .+....+.+.+|+++.++|+-|
T Consensus 248 ~~~i~~~~~~~~~~--~~~~---~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 248 KFELTVRPAMATEL--SVDP---EQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred eEEEEEecCCCCCC--CCCH---HHHHHHHHHHHHHHHHcCchHH
Confidence 47777766433322 2222 5677899999999999999865
No 74
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=42.23 E-value=1.5e+02 Score=23.00 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=21.2
Q ss_pred eEEEEEEEecCCccEEEEEEEecC
Q 031343 67 YAKQRIDVLDKEKFYCKSTVFEED 90 (161)
Q Consensus 67 ~~kErl~~~D~~~~~~~y~vieg~ 90 (161)
.+||-+-.+++.+..+.|.+-++.
T Consensus 49 kvKE~~~~ynp~~~~~~Y~is~~~ 72 (178)
T PF02087_consen 49 KVKEALYHYNPKNKTYFYDISESK 72 (178)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEE
T ss_pred ceEEEEEEecCCCceEEEEeeeee
Confidence 799999999999999999887764
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=39.08 E-value=1.5e+02 Score=27.94 Aligned_cols=78 Identities=8% Similarity=0.109 Sum_probs=40.9
Q ss_pred EEEEEEEEeccCHHHHHHHHhhCccccccc--ccCcceeeEEEEcCCC-----ccceEEEEEEecCCceeeEEEEEEEec
Q 031343 4 LRFDKDGSAAVAPSRMFKAFILDSHNLFPE--LFPQAFKSVVYEQGDG-----EAGSVKIMYFAEGNKHTYAKQRIDVLD 76 (161)
Q Consensus 4 ~~~~~ev~i~a~adkvW~~~~~d~~~llpk--~~P~~v~s~e~~eGdg-----~~GsiR~~~~~~g~~~~~~kErl~~~D 76 (161)
.++....-+..+|||.=+++ ++ ..++.. -|-..|....++.+.+ --|+||+|.+.++ .+.|. .-
T Consensus 147 ~~l~e~~~vTgsaDKtIklW-k~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----~l~~~---~g 217 (745)
T KOG0301|consen 147 ASLPENTYVTGSADKTIKLW-KG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----VLLEM---HG 217 (745)
T ss_pred eecCCCcEEeccCcceeeec-cC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc----eeeee---ec
Confidence 34444444667777655544 22 111111 1223344444444422 2389999999443 34433 44
Q ss_pred CCccEEEEEEEecC
Q 031343 77 KEKFYCKSTVFEED 90 (161)
Q Consensus 77 ~~~~~~~y~vieg~ 90 (161)
+.++.|++++.-++
T Consensus 218 htn~vYsis~~~~~ 231 (745)
T KOG0301|consen 218 HTNFVYSISMALSD 231 (745)
T ss_pred cceEEEEEEecCCC
Confidence 88889988854433
No 76
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=38.03 E-value=62 Score=25.25 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=41.8
Q ss_pred eccCHHHHHHHHhhCcccccccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEEEEecCC
Q 031343 12 AAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFEEDN 91 (161)
Q Consensus 12 i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~ 91 (161)
++++..|.|+- .++ .+..-|..| .+.|.. +|.. ....+++..+..-++.=+-|..+|+....+.|+|-|-+.
T Consensus 3 ~~i~v~K~W~d----~~n-~~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWDD----YDD-KFKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEECC----CCC-CCCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 34445566653 223 234456534 456553 3322 345566665543334456677788889999999998765
No 77
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=37.94 E-value=58 Score=26.58 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=27.9
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++.....+ ++.+ .+....+.+.+|+++.++|+-|
T Consensus 238 ~y~i~~~~~~~~~~--~~~~---~~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDMY--STDV---EVSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCCC--CCCH---HHHHHHHHHHHHHHHHcCcHHh
Confidence 57777766432222 2223 5677899999999999999865
No 78
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.01 E-value=91 Score=26.64 Aligned_cols=17 Identities=18% Similarity=0.349 Sum_probs=13.1
Q ss_pred EecCCCCCeEEEEEEEE
Q 031343 106 EASGDGGTNCKTATEFH 122 (161)
Q Consensus 106 ~p~~~~gs~v~W~~~y~ 122 (161)
...|++||+--|.+.|-
T Consensus 304 sStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYN 320 (361)
T ss_pred eecCCCceeeehhhhhh
Confidence 34567899999988773
No 79
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=33.86 E-value=83 Score=25.66 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCc
Q 031343 138 SVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 138 ~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
..+....+.+.+|+++.++|+-|
T Consensus 259 ~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 259 ILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 36778899999999999999865
No 80
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.72 E-value=78 Score=26.08 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=28.1
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++.....+ ++++ .+....+.+.+|+++.++|+-|
T Consensus 248 ~y~i~i~~~~~~~~--~~~i---~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADFP--SDDV---IADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCCC--CCCH---HHHHHHHHHHHHHHHHcCcHhh
Confidence 57777765433222 2233 5778899999999999999865
No 81
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.69 E-value=77 Score=26.10 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=27.3
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++.....+ +++. .+....+.+.+|+++.++|+-|
T Consensus 251 ~~~i~~~~~~~~~~--~~d~---~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPP--LDDA---EATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCC--CCCH---HHHHHHHHHHHHHHHHcCchHH
Confidence 57777776443322 2222 4666788899999999999865
No 82
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.92 E-value=74 Score=25.86 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=27.8
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++.....+ ++.+ .+.+..+.+.+|+++.++|+-|
T Consensus 232 ~~~i~i~~~~~~~~--~~~~---~~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 232 TVTLHFYPAWDSFP--SEDA---QADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred cEEEEEecCCCCCC--CCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 46677765433222 2223 5788999999999999999865
No 83
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=30.67 E-value=88 Score=25.87 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=27.9
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++..+..+. + + ..+....+.+.+|+++.++|+-|
T Consensus 257 ~~~i~~~~~~~~~~~-~-d---~~~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDLLS-A-D---DETIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCCCC-C-C---HHHHHHHHHHHHHHHHHcCcHHH
Confidence 577777764433222 2 2 24677889999999999999865
No 84
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=30.58 E-value=88 Score=25.60 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=27.5
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++..+..+ ++.. .+....+.+.+|+++.++|+-|
T Consensus 245 ~~~i~~~~~~~~~~--~~~~---~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 245 GYRLKIDPPLDDFP--GDDE---IAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred eEEEEEeCCCCCCC--CCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 47777766433222 2222 5678889999999999999865
No 85
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=30.55 E-value=1.6e+02 Score=19.91 Aligned_cols=66 Identities=21% Similarity=0.143 Sum_probs=34.5
Q ss_pred EEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCC
Q 031343 83 KSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANP 157 (161)
Q Consensus 83 ~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p 157 (161)
.|+||+-+ |.+-..+|-++... +++.+=..+.+-......++ .+.+. ......+.++...||..||
T Consensus 14 G~~IL~rN-----~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~-~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 14 GYRILERN-----WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSP-EEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp T-EEEEEE-----EEETTEEEEEEEEE-TTEEEEEEEEE-----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CCEEeeee-----ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCH-HHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 46777654 44555788888764 55666555555544333322 23332 3455678888999999998
No 86
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.54 E-value=86 Score=25.84 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++.....+. + +. .+....+.+.+|+++.++|+-|
T Consensus 239 ~y~~~~~~~~~~~~~-~-~~---~~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 239 EFALHVQPADPAVAD-P-DP---LRAATALNAGIERIARRDPAQY 278 (305)
T ss_pred cEEEEEecCCCCCCC-C-CH---HHHHHHHHHHHHHHHHcCcHHh
Confidence 356666553222222 2 22 5677899999999999999865
No 87
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=29.79 E-value=1.4e+02 Score=19.25 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=6.5
Q ss_pred eeEEEEEEEEec
Q 031343 97 ESIVYEIKFEAS 108 (161)
Q Consensus 97 ~~y~~ti~v~p~ 108 (161)
..|..++++...
T Consensus 65 ~~y~l~v~a~D~ 76 (93)
T PF00028_consen 65 SSYQLTVRATDS 76 (93)
T ss_dssp SEEEEEEEEEET
T ss_pred CEEEEEEEEEEC
Confidence 455555555554
No 88
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=29.53 E-value=2.8e+02 Score=21.86 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=41.4
Q ss_pred cCCceeeEEEEEEEecCCccEEEEEEEec----CCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEE
Q 031343 61 EGNKHTYAKQRIDVLDKEKFYCKSTVFEE----DNMLDILESIVYEIKFEASGDGGTNCKTATEFHI 123 (161)
Q Consensus 61 ~g~~~~~~kErl~~~D~~~~~~~y~vieg----~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~ 123 (161)
.|.++...++.|-.+-+..-.|.|..-+. ++|. =-+|++..+|... |+.|.+.|...|+-
T Consensus 134 ~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~la--RG~Y~aks~f~Dd-D~~~~l~~~w~feI 197 (200)
T PF02115_consen 134 KGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGMLA--RGSYTAKSKFVDD-DKNVHLEWEWSFEI 197 (200)
T ss_dssp TTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BSTTT---EEEEEEEEEEET-TSSECEEEEEEEEE
T ss_pred CCEeEcccceeeeccCCCCcceEEeCcCccCCCceeE--eeeeeEEEEEEeC-CCcEEEEEEEEEEE
Confidence 44566777888889999888888887764 3443 3799999999985 45566666666653
No 89
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=28.80 E-value=48 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=22.1
Q ss_pred cceEEEEEEecCCceeeEEEEEEEecCCccEEEEEEE
Q 031343 51 AGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVF 87 (161)
Q Consensus 51 ~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vi 87 (161)
+|-.+.+++.+|. |+|.+|.+++.+ |++=
T Consensus 25 ~g~~kEf~lpsGk-------R~D~id~~~k~I-yELK 53 (89)
T PF15650_consen 25 GGREKEFRLPSGK-------RPDFIDFETKII-YELK 53 (89)
T ss_pred ccceeeeecCCCC-------cCccccCCcceE-EEec
Confidence 3667788888774 899999999766 6653
No 90
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=27.65 E-value=2.1e+02 Score=23.04 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=29.9
Q ss_pred EEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 115 CKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 115 v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
..|.+.+++.-..... + . ..+....+.+.+|+.+.++|+-|
T Consensus 246 ~~~~~~i~~~~~~~~~-~-~---~~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSS-E-D---IEELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCcc-c-h---HHHHHHHHHHHHHHHHHcChHhh
Confidence 5778888875443332 2 2 36788899999999999999864
No 91
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=26.73 E-value=1.3e+02 Score=22.26 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCc
Q 031343 139 VELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 139 ~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+..+.+.+|+.+.++|+.|
T Consensus 163 ~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 163 EEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHhCchhh
Confidence 5778899999999999999865
No 92
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.28 E-value=1.1e+02 Score=25.24 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++.-...+ ++.. .+....+.+.+|+++.++|+-|
T Consensus 249 ~~~i~~~~~~~~~~--~~~~---~~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 249 GYRLVIHPPLEDFP--GESE---EADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred eEEEEEeCCCcCCC--CCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 47777775332222 2222 3446789999999999999865
No 93
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=26.18 E-value=1.2e+02 Score=23.79 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=28.0
Q ss_pred ceEEE---EEEecCCceeeEEEEEEEecCCccEEEEEEEecCC
Q 031343 52 GSVKI---MYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFEEDN 91 (161)
Q Consensus 52 GsiR~---~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~ 91 (161)
|..++ ++|..| ..-.|+++...+|..+.-.--..|+|.+
T Consensus 86 G~F~~~s~v~F~tG-e~l~itq~~~GlD~~~~L~~d~~i~G~v 127 (192)
T PF07474_consen 86 GEFNRESEVEFATG-ERLTITQTARGLDSDGYLLLDTVISGQV 127 (192)
T ss_dssp TEEEEEEEEEESSS---EEEEEEEEEE-TTS-EEEEEEEEEEE
T ss_pred cEEEEEEEEEEeCC-CEEEEEEEecccCCCCcEEEEEEEeccC
Confidence 55543 568777 4568999999999999988888889875
No 94
>PRK14681 hypothetical protein; Provisional
Probab=25.69 E-value=2.6e+02 Score=21.16 Aligned_cols=69 Identities=14% Similarity=-0.026 Sum_probs=44.8
Q ss_pred EEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCC
Q 031343 82 CKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPD 158 (161)
Q Consensus 82 ~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~ 158 (161)
-.|+|++=+ |.+-..+|-++...+++++|=..+.+-.......+ .+.+. ......+.++.+.||..|+.
T Consensus 60 ~Gy~IL~rN-----~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p-~eaVt--~~Kqrrl~raA~~yL~~~~~ 128 (158)
T PRK14681 60 HGWTTLSRN-----WHCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYP-QEAVT--AAKQHNLRKAACDWLLERRN 128 (158)
T ss_pred CCCEEEEEE-----EeCCCCcEEEEEEcCCceEEEEEEEeccCCCCCCh-HHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 457777654 33445788888874446888888877665443323 34332 34557888999999988763
No 95
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=25.30 E-value=51 Score=27.02 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhCCCC
Q 031343 143 TALFKAVEAHLLANPDL 159 (161)
Q Consensus 143 ~~~~k~ie~~l~~~p~~ 159 (161)
.+++++|+-||.+||..
T Consensus 220 D~LYrAID~YLk~Hp~l 236 (258)
T PF03000_consen 220 DGLYRAIDIYLKAHPGL 236 (258)
T ss_pred chHHHHHHHHHHHcccC
Confidence 47899999999999974
No 96
>PRK14680 hypothetical protein; Provisional
Probab=24.34 E-value=2.6e+02 Score=20.45 Aligned_cols=68 Identities=16% Similarity=0.109 Sum_probs=44.0
Q ss_pred EEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCC
Q 031343 82 CKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPD 158 (161)
Q Consensus 82 ~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~ 158 (161)
-.|+||+=+. .+-..+|-++.. +++++|=..+.+-.......+ .+.+. ......+.++.+.||..|+.
T Consensus 23 ~Gy~Il~rN~-----r~~~GEIDiIa~-~~~~lVFVEVKtR~~~~~g~p-~eaV~--~~K~~ri~raA~~yL~~~~~ 90 (134)
T PRK14680 23 TGHRILARNW-----RHGGLELDIVCE-DGDTIVFVEVKTRAAHGLTSP-TDALT--HSKRHRLIRAARAWLAAHDA 90 (134)
T ss_pred CCCEEEEeec-----CCCCCeEEEEEE-eCCEEEEEEEEecCCCCCCCh-HHhCC--HHHHHHHHHHHHHHHHhCCC
Confidence 3578887653 333578888876 456777777777554333223 34332 45567888999999988873
No 97
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=24.31 E-value=2.1e+02 Score=18.57 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=34.3
Q ss_pred cccccCcceeeEEEEcCCCccceEEEEEEecCCceeeEEEEEEEecCCccEEEEEEEecCCCCcCceeE
Q 031343 31 FPELFPQAFKSVVYEQGDGEAGSVKIMYFAEGNKHTYAKQRIDVLDKEKFYCKSTVFEEDNMLDILESI 99 (161)
Q Consensus 31 lpk~~P~~v~s~e~~eGdg~~GsiR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~vieg~~l~~~~~~y 99 (161)
+.-|.|. .++|+++-.+ +....+.-..++ -|.- .+. -+ ....|.|.+-++....+||+.+
T Consensus 12 F~vwAP~-A~~V~l~l~~---~~~~~m~~~~~G--~W~~-~v~-~~-~g~~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 12 FRLWAPD-AKRVTLRLDD---GEEIPMQRDGDG--WFEA-EVP-GA-AGTRYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEeCCC-CCEEEEEecC---CCcccCccCCCc--EEEE-EeC-CC-CCCeEEEEECCCcCCCCCcccc
Confidence 5568886 6888876322 122223322222 1211 222 23 7788999998776667788665
No 98
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=23.91 E-value=1.4e+02 Score=24.41 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCc
Q 031343 139 VELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 139 ~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+....+.+.+|+++.++|+-|
T Consensus 254 ~~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 254 DLDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHHcCcHhH
Confidence 3567899999999999999865
No 99
>PRK12497 hypothetical protein; Reviewed
Probab=23.33 E-value=2.8e+02 Score=19.66 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=42.0
Q ss_pred EEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCC
Q 031343 82 CKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPD 158 (161)
Q Consensus 82 ~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~ 158 (161)
..|+||+-+. ..-..+|-++... ++++|=..+.+-.......+ .+.+. ......+.++.+.||..+|+
T Consensus 23 ~Gy~Il~rN~-----r~~~GEIDiIa~~-~~~lvFVEVK~R~~~~~g~~-~eav~--~~K~~ri~~aA~~yL~~~~~ 90 (119)
T PRK12497 23 KGLRILARNF-----RCRFGEIDLIARD-GDTLVFVEVKTRRSDRFGGA-AEAVT--PRKQRRLRRAAQLWLARHPS 90 (119)
T ss_pred CCCEEEccee-----cCCCCcEeeeEEe-CCEEEEEEEEeccCCCCCCH-HHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 3577776543 3334677777763 56777777776554332222 33332 34557888999999999874
No 100
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=22.68 E-value=1.7e+02 Score=17.66 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.9
Q ss_pred HhhHHHHHHHHHHHHHHHHhhCC
Q 031343 135 LKGSVELGTALFKAVEAHLLANP 157 (161)
Q Consensus 135 ~~~~~~~~~~~~k~ie~~l~~~p 157 (161)
.+.+.+.+...++.+|..|..+|
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 34467888899999999999887
No 101
>PF11647 PMT_C: C-terminal region of Pasteurella multocida toxin residues 569-1285; InterPro: IPR020972 This entry represents the C-terminal domain of Pasteurella multocida toxin (PMT) which displays a Trojan horse-like shape with three domains, C1, C2 and C3. The C3 domain possesses the Cys-His-Asp catalytic triad. PMT is an enzyme toxin carrying the cysteine protease-like catalytic triad which functions on the cytoplasmic face of the plasma membrane of target cells []. This entry is also found in the Vibrio cholerae RTX toxin [], a bacterial toxin that self-process by a cysteine peptidase mechanism. These cysteine peptidases belong to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). ; PDB: 4ERR_A 2EC5_B 2EBH_X 2EBF_X.
Probab=22.44 E-value=1.4e+02 Score=19.24 Aligned_cols=21 Identities=43% Similarity=0.414 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q 031343 139 VELGTALFKAVEAHLLANPDL 159 (161)
Q Consensus 139 ~~~~~~~~k~ie~~l~~~p~~ 159 (161)
++.+..+-+.||.|+..+||.
T Consensus 41 V~~l~~L~~~ie~yl~~hp~s 61 (66)
T PF11647_consen 41 VETLYELRKQIEHYLLDHPDS 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHHhcCCcc
Confidence 345556779999999999984
No 102
>PRK14688 hypothetical protein; Provisional
Probab=22.21 E-value=2.8e+02 Score=19.95 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=42.4
Q ss_pred EEEEEEecCCCCcCceeEEEEEEEEecCCCCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCC
Q 031343 82 CKSTVFEEDNMLDILESIVYEIKFEASGDGGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANP 157 (161)
Q Consensus 82 ~~y~vieg~~l~~~~~~y~~ti~v~p~~~~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p 157 (161)
-.|+||+-+ |.+-..+|-++.. +++++|=..+.+-.......+ .+.+. ......+.++-+.||..++
T Consensus 23 ~Gy~Il~rN-----~r~~~GEIDiIa~-~~~~lVFVEVK~R~~~~~g~~-~eaV~--~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 23 MGYSIIQTN-----CRLPEGEIDIVGQ-DGEYLVFIEVRTKRRLGYGLP-AESVT--PRKKAHLMASAESYIQKHR 89 (121)
T ss_pred CCCEEEEEE-----eeCCCCcEeEEEe-eCCEEEEEEEEecCCCCCCCh-HHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 357777654 4444578888876 456777777776543332222 33332 3555778889999998887
No 103
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=21.59 E-value=1.4e+02 Score=24.33 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=26.4
Q ss_pred EEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 116 KTATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
.+.+.+++.... . ++.+ .+....+.+.+|+++.++|+-|
T Consensus 227 ~y~~~~~~~~~~--~-~~~~---~~~t~~~~~~lE~~Ir~~PeQW 265 (289)
T PRK08905 227 GYRLHLRPVQEP--L-PGDK---AADAAVINAEIERLIRRFPTQY 265 (289)
T ss_pred cEEEEEecCCCC--C-CCCH---HHHHHHHHHHHHHHHHcCcHHh
Confidence 455666654321 2 2222 4677889999999999999865
No 104
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=21.37 E-value=4e+02 Score=20.80 Aligned_cols=140 Identities=8% Similarity=0.002 Sum_probs=74.0
Q ss_pred EEEEEEeccCHHHHHHHHhhCcccccccccCcceeeEEEEcC-CCccceEEEEEEec---C--CceeeEEEEE-EEecCC
Q 031343 6 FDKDGSAAVAPSRMFKAFILDSHNLFPELFPQAFKSVVYEQG-DGEAGSVKIMYFAE---G--NKHTYAKQRI-DVLDKE 78 (161)
Q Consensus 6 ~~~ev~i~a~adkvW~~~~~d~~~llpk~~P~~v~s~e~~eG-dg~~GsiR~~~~~~---g--~~~~~~kErl-~~~D~~ 78 (161)
+..|..++++++++|+.+. +... ..+|-+ .+..++++|- |+.. .|-+....+ + ++-..+-=|- ..++..
T Consensus 48 ~k~egvi~~~~e~v~~~l~-~~e~-r~~Wd~-~~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~ 123 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMY-QPEH-RIKWDK-SLQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFVDLVHIKRYEGN 123 (204)
T ss_pred EEEEEEecCCHHHHHHHHh-ccch-hhhhcc-cccceeeEEEeCCCc-EEEEEecccccCCcccCceEEEEEEEEEeCCC
Confidence 4567889999999999985 7554 689999 4888888765 3211 222222221 1 1111221111 123443
Q ss_pred ccEEEEEEEecCCCCcCceeE------EEEEEEEecCC--CCCeEEEEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHH
Q 031343 79 KFYCKSTVFEEDNMLDILESI------VYEIKFEASGD--GGTNCKTATEFHIKGDGESKLEEELKGSVELGTALFKAVE 150 (161)
Q Consensus 79 ~~~~~y~vieg~~l~~~~~~y------~~ti~v~p~~~--~gs~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie 150 (161)
...+.+.-++=+-.+ +-+.| ..-+-+.|-++ ++|.+.|-+..++.|.- |. --..++....+..++..+.
T Consensus 124 ~~ii~~~sv~Hp~~P-p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~l-P~-~vv~~~~~~~~~~f~~~~~ 200 (204)
T cd08904 124 MNIVSSVSVEYPQCP-PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNL-SR-SVIEKTMPTNLVNLILDAK 200 (204)
T ss_pred EEEEEEEecccCCCC-CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCC-CH-HHHHHHhHHHHHHHHHHHH
Confidence 333334333332211 22222 23344567654 47999999998888643 32 2223334555556666555
Q ss_pred HH
Q 031343 151 AH 152 (161)
Q Consensus 151 ~~ 152 (161)
.-
T Consensus 201 ~~ 202 (204)
T cd08904 201 DG 202 (204)
T ss_pred Hh
Confidence 43
No 105
>COG2122 Uncharacterized conserved protein [Function unknown]
Probab=21.10 E-value=1.4e+02 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=23.1
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHhhCCCC
Q 031343 132 EEELKGSVELGTALFKAVEAHLLANPDL 159 (161)
Q Consensus 132 ~~~~~~~~~~~~~~~k~ie~~l~~~p~~ 159 (161)
++..+++.+++...--.||.|++.||+.
T Consensus 31 ~~~~~aa~~aV~~~R~~Le~yI~~nP~f 58 (256)
T COG2122 31 EAHEKAAEEAVLRHRSELEDYILKNPEF 58 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 4556777888888888999999999974
No 106
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.83 E-value=1.4e+02 Score=24.36 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=26.9
Q ss_pred EEEEEEEcCCCCCCchHhHhhHHHHHHHHHHHHHHHHhhCCCCc
Q 031343 117 TATEFHIKGDGESKLEEELKGSVELGTALFKAVEAHLLANPDLY 160 (161)
Q Consensus 117 W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~p~~~ 160 (161)
+.+.+.+.-.. +. ++. ..+....+.+.+|+++.++|+-|
T Consensus 236 y~v~~~~~~~~-~~-~~~---~~~~t~~~~~~lE~~Ir~~PeQW 274 (298)
T PRK07920 236 WGFRVHPPLDV-PS-AED---VAAMTQALADAFAANIAAHPEDW 274 (298)
T ss_pred EEEEEeCCCCC-Cc-hhH---HHHHHHHHHHHHHHHHHhChHHH
Confidence 66677653322 11 222 36788899999999999999865
Done!