BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031344
         (161 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
          Length = 149

 Score =  132 bits (333), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 3/149 (2%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
           YPP+ V+  L G FAFI++D   STLF+A
Sbjct: 120 YPPDQVIKELEGKFAFILFDSKASTLFLA 148


>sp|A6W1X2|ACDH_MARMS Acetaldehyde dehydrogenase OS=Marinomonas sp. (strain MWYL1)
           GN=Mmwyl1_3802 PE=3 SV=1
          Length = 303

 Score = 30.8 bits (68), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 33/147 (22%)

Query: 14  EELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---DNVTLAYTHQNESPLRQRSF 70
           E +    SR+  P T +   +D F +T +SAV  Q+G       +   +  E PL  R  
Sbjct: 153 EIIATVSSRSVGPGTRAN--IDEFTRTTASAVE-QIGGARKGKAIIVINPAEPPLMMR-- 207

Query: 71  AVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSG 130
              D I CL                L++  +EV +    Y  +++   Y P + +  ++G
Sbjct: 208 ---DTIHCL----------------LSEDPDEVNISKSVYNMVKEVQKYVPGYRL--VNG 246

Query: 131 YFAFIVYDKSTSTLFVASVGLFNFLPT 157
                ++D    ++F+   GL +FLPT
Sbjct: 247 P----IFDGRKVSIFMEVEGLGDFLPT 269


>sp|O05272|ASNO_BACSU Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Bacillus
           subtilis (strain 168) GN=asnO PE=1 SV=3
          Length = 614

 Score = 30.0 bits (66), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 125 VGHLSGYFAFIVYDKSTSTLFVA--SVGLFNFLPTKK 159
           V HL+G FAF V+D+  + LF A   +G+  F  TK+
Sbjct: 118 VDHLNGIFAFAVWDEKRNLLFAARDRLGVKPFFYTKE 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,024,610
Number of Sequences: 539616
Number of extensions: 2034268
Number of successful extensions: 5396
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5393
Number of HSP's gapped (non-prelim): 6
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)