STRING 9.05 
  RPN12b protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
RPN12b
RPN12b (Regulatory Particle Non-ATPase 12b); peptidase; Regulatory Particle Non-ATPase 12b (RPN12b); FUNCTIONS IN- peptidase activity; INVOLVED IN- proteolysis; LOCATED IN- proteasome regulatory particle; CONTAINS InterPro DOMAIN/s- 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro-IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro-IPR005062); BEST Arabidopsis thaliana protein match is- RPN12a (Regulatory Particle non-ATPase 12a); peptidase (TAIR-AT1G64520.1); Has 343 Blast hits to 343 proteins in 142 species- Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 83; Plants - 39 [...] (233 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
RPT1A
RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase; 26S proteasome AAA-ATPase subunit RPT1a (RPT1a [...] (426 aa)
     0.977
ATS9
ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9); specifically interacts with FUS6/COP11 via the C-termi [...] (419 aa)
    0.975
RPN10
RPN10 (REGULATORY PARTICLE NON-ATPASE 10); peptide receptor; Regulatory particle non-ATPase sub [...] (386 aa)
    0.969
AT5G23540
26S proteasome regulatory subunit, putative; 26S proteasome regulatory subunit, putative; INVOL [...] (308 aa)
    0.964
AT4G24820
26S proteasome regulatory subunit, putative (RPN7); 26S proteasome regulatory subunit, putative [...] (387 aa)
    0.950
PAG1
PAG1; endopeptidase/ peptidase/ threonine-type endopeptidase; Encodes 20S proteasome subunit PA [...] (249 aa)
      0.947
PBG1
PBG1; peptidase/ threonine-type endopeptidase; 20S proteasome beta subunit PBG1 (PBG1) mRNA, co [...] (246 aa)
     0.936
PBF1
PBF1; peptidase/ threonine-type endopeptidase; Encodes 20S proteasome beta subunit PBF1 (PBF1). [...] (223 aa)
      0.923
TPP2
TPP2 (TRIPEPTIDYL PEPTIDASE II); tripeptidyl-peptidase; Tripeptidyl Peptidase II. Ser protease [...] (1380 aa)
      0.906
APC10
anaphase-promoting complex, subunit 10 family / APC10 family; anaphase-promoting complex, subun [...] (192 aa)
       0.905
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes

 Server load: low (20%)
Permalink