Query 031345
Match_columns 161
No_of_seqs 106 out of 232
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 20:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_T 26S proteasome regulato 100.0 2.2E-49 7.5E-54 329.7 10.7 158 2-161 105-274 (274)
2 4b0z_A RPN12, 26S proteasome r 100.0 6.4E-39 2.2E-43 260.1 13.1 128 2-131 99-228 (229)
3 1rz4_A Eukaryotic translation 100.0 3.6E-28 1.2E-32 197.3 12.5 127 2-132 65-192 (226)
4 3t5v_A Nuclear mRNA export pro 99.6 8.8E-15 3E-19 123.6 10.2 120 2-127 118-259 (316)
5 3txn_A 26S proteasome regulato 96.6 0.037 1.3E-06 47.6 13.0 123 8-132 228-362 (394)
6 4b4t_R RPN7, 26S proteasome re 95.9 0.026 9E-07 48.3 8.0 100 32-132 282-393 (429)
7 1ufm_A COP9 complex subunit 4; 94.4 0.16 5.6E-06 34.4 6.9 58 73-131 12-75 (84)
8 4b4t_P 26S proteasome regulato 93.5 0.41 1.4E-05 41.1 9.5 124 7-132 265-405 (445)
9 4b4t_Q 26S proteasome regulato 91.1 2.3 8E-05 34.0 10.6 100 32-132 292-402 (434)
10 4b4t_O 26S proteasome regulato 89.5 1.5 5.1E-05 37.1 8.5 119 10-130 221-351 (393)
11 3t5x_A PCI domain-containing p 84.2 1.1 3.7E-05 34.7 4.3 70 40-113 84-168 (203)
12 4b4t_S RPN3, 26S proteasome re 83.1 0.53 1.8E-05 42.0 2.3 75 39-114 345-424 (523)
13 1y6u_A XIS, excisionase from t 79.8 4.2 0.00014 26.3 5.3 40 91-131 16-57 (70)
14 3chm_A COP9 signalosome comple 57.6 57 0.0019 24.3 10.3 96 13-114 36-132 (169)
15 3e21_A HFAF1, FAS-associated f 49.5 9.5 0.00032 22.7 2.0 28 94-123 9-36 (45)
16 2gmg_A Hypothetical protein PF 47.5 12 0.00041 26.4 2.5 32 75-108 10-43 (105)
17 2lju_A Putative oxidoreductase 46.5 7.1 0.00024 27.6 1.2 22 100-123 63-84 (108)
18 2heo_A Z-DNA binding protein 1 42.5 42 0.0014 20.7 4.4 47 75-122 9-56 (67)
19 1jr3_D DNA polymerase III, del 42.1 85 0.0029 24.8 7.3 115 4-122 166-295 (343)
20 2jya_A AGR_C_3324P, uncharacte 39.3 7.9 0.00027 27.3 0.5 22 100-123 55-76 (106)
21 3txn_A 26S proteasome regulato 38.2 29 0.00099 29.4 4.0 101 6-106 261-362 (394)
22 1oks_A RNA polymerase alpha su 32.9 15 0.00052 22.8 1.0 21 6-26 23-47 (56)
23 2lkp_A Transcriptional regulat 28.7 95 0.0032 20.6 4.8 56 65-123 21-77 (119)
24 2oku_A Acyl-COA dehydrogenase 27.8 1.4E+02 0.0048 21.6 5.7 46 40-86 3-50 (131)
25 2pjp_A Selenocysteine-specific 27.5 58 0.002 22.3 3.5 51 69-123 59-112 (121)
26 2ql2_B Neurod1, neurogenic dif 26.8 82 0.0028 19.4 3.8 25 137-161 33-57 (60)
27 4gim_A Pseudouridine-5'-phosph 26.1 58 0.002 27.3 3.7 51 102-157 231-285 (335)
28 2l01_A Uncharacterized protein 25.6 35 0.0012 22.6 1.9 38 90-132 23-60 (77)
29 1r1t_A Transcriptional repress 25.5 1.2E+02 0.0041 20.7 4.9 56 65-123 35-91 (122)
30 3hr0_A COG4; conserved oligome 25.4 39 0.0013 27.1 2.5 70 41-123 164-239 (263)
31 1r1u_A CZRA, repressor protein 24.9 1.2E+02 0.0041 19.8 4.6 56 65-123 15-71 (106)
32 4exq_A UPD, URO-D, uroporphyri 24.4 71 0.0024 26.4 4.1 76 35-114 154-234 (368)
33 3cyv_A URO-D, UPD, uroporphyri 22.6 1.1E+02 0.0039 24.6 4.9 76 35-114 144-224 (354)
34 2htj_A P fimbrial regulatory p 21.4 1.4E+02 0.0048 18.5 4.2 43 78-122 2-45 (81)
No 1
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-49 Score=329.74 Aligned_cols=158 Identities=27% Similarity=0.533 Sum_probs=118.4
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhcchh---hhcCccchhhHHHHHHHhhcChHHHHHhhhc--CCCCcHHHHHHHHHHH
Q 031345 2 ILGLNLLRLLVQNRIAEFHTELELLSST---ALENPCIKHAVELEQSFMEGAYNRVLSAKQN--VPNETYGYFMDLLAKT 76 (161)
Q Consensus 2 i~gL~LL~LLsqN~iaeFh~~lE~ip~~---~~~~~~I~~~v~LEq~LmeG~Y~kv~~a~~~--~Ps~~~~~fm~~L~~t 76 (161)
++|+||||||+|||+++||++||+||.. +++||+|+||++||+++|+|||+|+|+..++ .|+++|++||+.|++|
T Consensus 105 ~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~ 184 (274)
T 4b4t_T 105 LISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSA 184 (274)
T ss_dssp HHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 6899999999999999999999999964 4589999999999999999999999986554 4678899999999999
Q ss_pred HHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhhcCCCCeeeCCeEEEeCCCCCC-------CCCCCChHHHHHH
Q 031345 77 VRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAKDSA-------PCKEIPSLQLINQ 149 (161)
Q Consensus 77 iR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~~~rgW~~~~~~i~f~~~~~~~-------~~~~~~~~~li~~ 149 (161)
+|.+||+||+|||.+||+++++++|+|+|++|+.+|++ +|||+++||++||+..+... ...++|+.++|+|
T Consensus 185 iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~--~~gW~~~~~~v~F~~~~~~~~~~~~~~~~~~ips~~li~~ 262 (274)
T 4b4t_T 185 IRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFAL--ERNWPIVNSKVYFNNQSKEKADYEDEMMHEEDQKTNIIEK 262 (274)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHH--HTTCCCCSSCCCC---------------------------
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHH--HcCCEEeCCEeEECCccccccccccccccccCcHHHHHHH
Confidence 99999999999999999999999999999999999984 68999999999998753221 2356899999999
Q ss_pred HHhHHHHhhhcC
Q 031345 150 TLSYARELERIV 161 (161)
Q Consensus 150 ~l~Ya~elE~IV 161 (161)
+|+||+|||+||
T Consensus 263 ~l~YA~elE~IV 274 (274)
T 4b4t_T 263 AMDYAISIENIV 274 (274)
T ss_dssp ------------
T ss_pred HHHHHHHhhhcC
Confidence 999999999998
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-39 Score=260.14 Aligned_cols=128 Identities=37% Similarity=0.708 Sum_probs=122.6
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhcchhh--hcCccchhhHHHHHHHhhcChHHHHHhhhcCCCCcHHHHHHHHHHHHHH
Q 031345 2 ILGLNLLRLLVQNRIAEFHTELELLSSTA--LENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRD 79 (161)
Q Consensus 2 i~gL~LL~LLsqN~iaeFh~~lE~ip~~~--~~~~~I~~~v~LEq~LmeG~Y~kv~~a~~~~Ps~~~~~fm~~L~~tiR~ 79 (161)
++|+|||++|+||++++||+++|++|.+. ++||+|++|++|+|++|+|||+++|+..++.|++.|.+||+.|++++|.
T Consensus 99 ~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~ 178 (229)
T 4b0z_A 99 VTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRN 178 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 68999999999999999999999999764 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhhcCCCCeeeCCeEEEeC
Q 031345 80 EIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQK 131 (161)
Q Consensus 80 eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~~~rgW~~~~~~i~f~~ 131 (161)
++++||++||++||+++++++|+|+|++|+.+|++ ++||+++||.|||++
T Consensus 179 ~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~--~~gw~i~dg~i~F~~ 228 (229)
T 4b0z_A 179 EIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE--ERGWDIRDGVIYFPK 228 (229)
T ss_dssp HHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH--HHTCEEETTEEECC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH--HcCCEEeCCEEecCC
Confidence 99999999999999999999999999999999984 689999999999986
No 3
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.95 E-value=3.6e-28 Score=197.25 Aligned_cols=127 Identities=16% Similarity=0.137 Sum_probs=112.1
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhcchhhhcCccchhhHHHHHHHhhcChHHHHHhhhcCCCCcHHHHHHHHHHHHHHHH
Q 031345 2 ILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEI 81 (161)
Q Consensus 2 i~gL~LL~LLsqN~iaeFh~~lE~ip~~~~~~~~I~~~v~LEq~LmeG~Y~kv~~a~~~~Ps~~~~~fm~~L~~tiR~ei 81 (161)
++|++||.+|+++..++||+.++.||+.+++||+|++||.|+++||+|+|+++|++.+.. +++..++.-|.++||.+|
T Consensus 65 ii~~iLlk~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~--~~l~~~i~gf~dsIR~~I 142 (226)
T 1rz4_A 65 VTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN--MDLLEGITGFEDSVRKFI 142 (226)
T ss_dssp HHHHHHHHHHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTT--CHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC--hhHHHHHhHHHHHHHHHH
Confidence 689999999999999999999999999888999999999999999999999999997653 344444445999999999
Q ss_pred HHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhhcCCCCeee-CCeEEEeCC
Q 031345 82 AGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQKA 132 (161)
Q Consensus 82 A~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~~~rgW~~~-~~~i~f~~~ 132 (161)
|.|+++||++||+++++++||+.|++++.+|++ ++||+++ +|.|+|+..
T Consensus 143 ~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~--~~GW~vd~~g~I~~~n~ 192 (226)
T 1rz4_A 143 CHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS--KYGWSADESGQIFICSQ 192 (226)
T ss_dssp HHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH--HHTCEECC--CEECCCH
T ss_pred HHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH--HCCCEECCCccEEeCCC
Confidence 999999999999999999998778999999985 4799997 778877654
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8.8e-15 Score=123.64 Aligned_cols=120 Identities=16% Similarity=0.289 Sum_probs=105.7
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhcchhhhcCccchhhHHHHHHHh---------------hcChHHHHHhhhcCCCCcH
Q 031345 2 ILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM---------------EGAYNRVLSAKQNVPNETY 66 (161)
Q Consensus 2 i~gL~LL~LLsqN~iaeFh~~lE~ip~~~~~~~~I~~~v~LEq~Lm---------------eG~Y~kv~~a~~~~Ps~~~ 66 (161)
+.|++||+.|.+ .+++..+..+|.++++||.|++++.+.+++. .|||.++|+...+ |+..|
T Consensus 118 F~aY~lL~~l~~---~~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~-~~~py 193 (316)
T 3t5v_A 118 FRAYALLSKIRD---PQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQS-PSLPL 193 (316)
T ss_dssp HHHHHHHHSTTC---THHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTC-TTSCH
T ss_pred HHHHHHHHHhcc---chHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhc-cCCCh
Confidence 468899998875 4788999999999999999999999999985 3899999999877 43345
Q ss_pred --HHHHHHHHHHHHHHHHHhHHHhcC----cccHHHHHHhhCCCCHHHHHHHHhhcCCCCeeeC-CeE
Q 031345 67 --GYFMDLLAKTVRDEIAGCSEKAYD----YLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKD-GFV 127 (161)
Q Consensus 67 --~~fm~~L~~tiR~eiA~~ie~AY~----sl~l~~a~~lL~~~~~~e~~~f~~~~~rgW~~~~-~~i 127 (161)
+.+|+...+++|..+..|+.+||. ++|++.++++|+|+|++|+.+|++ ..||++.+ +.+
T Consensus 194 L~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~--~~gl~~~~~~~~ 259 (316)
T 3t5v_A 194 LMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN--YYSIEIINGDAA 259 (316)
T ss_dssp HHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH--HTTCCEETTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH--HCCCeEeCCCCc
Confidence 899999999999999999999994 899999999999999999999994 68999985 444
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.62 E-value=0.037 Score=47.61 Aligned_cols=123 Identities=6% Similarity=0.055 Sum_probs=85.0
Q ss_pred HHHHhcCChhHHHHHHHhcchhh-hcCccchhhHHHHHHHhhcChHHHHHhhhc----CC-CCcHHHHHHHHHHHHHHHH
Q 031345 8 LRLLVQNRIAEFHTELELLSSTA-LENPCIKHAVELEQSFMEGAYNRVLSAKQN----VP-NETYGYFMDLLAKTVRDEI 81 (161)
Q Consensus 8 L~LLsqN~iaeFh~~lE~ip~~~-~~~~~I~~~v~LEq~LmeG~Y~kv~~a~~~----~P-s~~~~~fm~~L~~tiR~ei 81 (161)
|.-|..++..|+...+- =|... ..+|.+.....|-+..-.|++......... +. .+......+.|...||...
T Consensus 228 L~aLl~~~r~el~~~l~-~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~ 306 (394)
T 3txn_A 228 LCKIMLGQSDDVNQLVS-GKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQN 306 (394)
T ss_dssp HHHHHTTCGGGHHHHHH-SHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHhc-cccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 33444566667764321 11011 178999999999999999999766554332 22 2334555788999999999
Q ss_pred HHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHh----hcCCCCeee--CCeEEEeCC
Q 031345 82 AGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK----EEHPEWEMK--DGFVFFQKA 132 (161)
Q Consensus 82 A~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~----~~~rgW~~~--~~~i~f~~~ 132 (161)
..-+-+.|++|++++.|+.++++ +++++..+. ...-.=.+| +|.++|..+
T Consensus 307 L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 307 LCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLSQMILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp HHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC
T ss_pred HHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCC
Confidence 99999999999999999999995 888877762 111223788 677777654
No 6
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.026 Score=48.31 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=74.3
Q ss_pred cCccchhhHHHHHHHhhcChHHHHHhh----hcC--CCCcHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCC
Q 031345 32 ENPCIKHAVELEQSFMEGAYNRVLSAK----QNV--PNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 105 (161)
Q Consensus 32 ~~~~I~~~v~LEq~LmeG~Y~kv~~a~----~~~--Ps~~~~~fm~~L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~ 105 (161)
..|.+.....+-..+..++|...+... ... ..+....-.+.|...||......+-+.|++++++..|+.|+++
T Consensus 282 ~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s- 360 (429)
T 4b4t_R 282 TTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS- 360 (429)
T ss_dssp SHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-
T ss_pred CChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-
Confidence 567788888888899999999987642 111 1344555677799999999999999999999999999999998
Q ss_pred HHHHHHH----HhhcCCCCeee--CCeEEEeCC
Q 031345 106 DQELLEY----VKEEHPEWEMK--DGFVFFQKA 132 (161)
Q Consensus 106 ~~e~~~f----~~~~~rgW~~~--~~~i~f~~~ 132 (161)
++++.++ +....-.=.+| +|.|++..+
T Consensus 361 ~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 361 VAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 6666554 43333355777 666666553
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.37 E-value=0.16 Score=34.36 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhh---cCC-CCeee--CCeEEEeC
Q 031345 73 LAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE---EHP-EWEMK--DGFVFFQK 131 (161)
Q Consensus 73 L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~---~~r-gW~~~--~~~i~f~~ 131 (161)
|.+.+.++-...+.+-|++|+++..|++|+++ ++++.+++.. ..+ .=.+| +|.|.|..
T Consensus 12 L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~ 75 (84)
T 1ufm_A 12 LDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFET 75 (84)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECC
T ss_pred HHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCC
Confidence 34455555555677899999999999999998 8888777631 122 33566 66777755
No 8
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.41 Score=41.15 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=77.8
Q ss_pred HHHHHhcCChhHHHHHHHhcchhhhcCccchhhHHHHHHHhhcCh---HHHHHhhhcC--CCC------cHHHHHHHHHH
Q 031345 7 LLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAY---NRVLSAKQNV--PNE------TYGYFMDLLAK 75 (161)
Q Consensus 7 LL~LLsqN~iaeFh~~lE~ip~~~~~~~~I~~~v~LEq~LmeG~Y---~kv~~a~~~~--Ps~------~~~~fm~~L~~ 75 (161)
+++++-.+...++...+.++-.+ ...+.|...-.|.+....++. ..+....... +.+ .-......|..
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~ 343 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQK 343 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHH
Confidence 34444444445566666655332 233455555667777777654 4444432210 111 11445677999
Q ss_pred HHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhh----cCCCCeee--CCeEEEeCC
Q 031345 76 TVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE----EHPEWEMK--DGFVFFQKA 132 (161)
Q Consensus 76 tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~----~~rgW~~~--~~~i~f~~~ 132 (161)
.+++.-...+.+.|++|+++..+.+|+++ ++++..++.. ..-.=.+| +|.|+|..+
T Consensus 344 ~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~ 405 (445)
T 4b4t_P 344 RVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISDLVNQGIIYAKVNRPAKIVNFEKP 405 (445)
T ss_dssp HHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCCEEETTTTEEEC---
T ss_pred HHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCC
Confidence 99999999999999999999999999997 8999988731 11122677 677777654
No 9
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.07 E-value=2.3 Score=34.04 Aligned_cols=100 Identities=8% Similarity=0.126 Sum_probs=67.6
Q ss_pred cCccchhhHHHHHHHhhcChHHHHHhhhc-----CCCCcHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCCH
Q 031345 32 ENPCIKHAVELEQSFMEGAYNRVLSAKQN-----VPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSD 106 (161)
Q Consensus 32 ~~~~I~~~v~LEq~LmeG~Y~kv~~a~~~-----~Ps~~~~~fm~~L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~ 106 (161)
.++.+...-.+.+....+++...-..... ...+.....++.+...+|...-.-+.+.|++++++..+.+|+++ +
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~ 370 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-T 370 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-H
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-H
Confidence 55666666677777777776555443221 11333456678889999999999999999999999999999997 7
Q ss_pred HHHHHHHh----hcCCCCeee--CCeEEEeCC
Q 031345 107 QELLEYVK----EEHPEWEMK--DGFVFFQKA 132 (161)
Q Consensus 107 ~e~~~f~~----~~~rgW~~~--~~~i~f~~~ 132 (161)
+++..++. ...-.=.+| +|.+.+...
T Consensus 371 ~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~ 402 (434)
T 4b4t_Q 371 QQVEGKLSQMILDKIFYGVLDQGNGWLYVYET 402 (434)
T ss_dssp HHHHHHHHHHHHHTSSCCEEETTTTEEECC--
T ss_pred HHHHHHHHHHHhCCCcceecccccCeEeeCCC
Confidence 77776552 111222455 566666543
No 10
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.51 E-value=1.5 Score=37.07 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=76.4
Q ss_pred HHhcCChhHHHHHHHhcchhhh-cCccchhhHHHHHHHhhcChHHHHHhhh-cCC-CCcHHHHHHHHHHHHHHHHHHhH-
Q 031345 10 LLVQNRIAEFHTELELLSSTAL-ENPCIKHAVELEQSFMEGAYNRVLSAKQ-NVP-NETYGYFMDLLAKTVRDEIAGCS- 85 (161)
Q Consensus 10 LLsqN~iaeFh~~lE~ip~~~~-~~~~I~~~v~LEq~LmeG~Y~kv~~a~~-~~P-s~~~~~fm~~L~~tiR~eiA~~i- 85 (161)
-|...++-.|-.+|..-..... ++|......+|=+..-.|+|...-...+ +.+ .|........+...+|--....+
T Consensus 221 all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~ 300 (393)
T 4b4t_O 221 ALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETV 300 (393)
T ss_dssp HHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHh
Confidence 3445556666655554333334 6788888899999999999988865322 111 23445555556666665443322
Q ss_pred -HHhcCcccHHHHHHhhCCCCHHHHHHHHh-----hcCCCCeee--CCeEEEe
Q 031345 86 -EKAYDYLSIKDAGQMLLFTSDQELLEYVK-----EEHPEWEMK--DGFVFFQ 130 (161)
Q Consensus 86 -e~AY~sl~l~~a~~lL~~~~~~e~~~f~~-----~~~rgW~~~--~~~i~f~ 130 (161)
.+.|++||.++.++.|+++ ++|++.++- +.=+| .+| +|.|++.
T Consensus 301 ~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI~G-kIDQv~~~v~v~ 351 (393)
T 4b4t_O 301 FVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLLKG-SIDQVNELVTIS 351 (393)
T ss_dssp CSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCSSS-CEETTTTEECC-
T ss_pred ccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCEEE-EEcCCCCEEEEE
Confidence 2457899999999999997 899988873 11225 455 6666554
No 11
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=84.24 E-value=1.1 Score=34.73 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=51.6
Q ss_pred HHHHHHHhhcChHHHHHhhhcCCCCcHHHHHHH----HHHHHHHHHHHhHHH------hcCcccHHHHHHhhCCC-----
Q 031345 40 VELEQSFMEGAYNRVLSAKQNVPNETYGYFMDL----LAKTVRDEIAGCSEK------AYDYLSIKDAGQMLLFT----- 104 (161)
Q Consensus 40 v~LEq~LmeG~Y~kv~~a~~~~Ps~~~~~fm~~----L~~tiR~eiA~~ie~------AY~sl~l~~a~~lL~~~----- 104 (161)
..|=+++-.||..+.-++.++.. ..|++. +++.+|.-+-...-| .|+.||+++.+.-|.++
T Consensus 84 ~~L~~Avr~Gdl~~f~~~l~~~~----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~ 159 (203)
T 3t5x_A 84 AEVTRAVSEGNLLLLHEALAKHE----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDV 159 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTH----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHhH----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCC
Confidence 47889999999988877665522 345443 677888766655444 69999999999988764
Q ss_pred CHHHHHHHH
Q 031345 105 SDQELLEYV 113 (161)
Q Consensus 105 ~~~e~~~f~ 113 (161)
+++|++..+
T Consensus 160 ~~~evE~il 168 (203)
T 3t5x_A 160 DIDEVQCIL 168 (203)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 688887776
No 12
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.06 E-value=0.53 Score=41.99 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=53.3
Q ss_pred hHHHHHHHhhcChHHHHHhhhcCC-----CCcHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHH
Q 031345 39 AVELEQSFMEGAYNRVLSAKQNVP-----NETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYV 113 (161)
Q Consensus 39 ~v~LEq~LmeG~Y~kv~~a~~~~P-----s~~~~~fm~~L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~ 113 (161)
=..|.++.-.|+-.++-......- ...|. .+..|...+...-...+.++|++||+.+.+..|+++|++++..++
T Consensus 345 Y~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~-LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iV 423 (523)
T 4b4t_S 345 YYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQ-LCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMV 423 (523)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTH-HHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhcceeccCChhH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHH
Confidence 346778888888777655433211 12232 455666677777778899999999999999999998777777666
Q ss_pred h
Q 031345 114 K 114 (161)
Q Consensus 114 ~ 114 (161)
.
T Consensus 424 A 424 (523)
T 4b4t_S 424 S 424 (523)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=79.82 E-value=4.2 Score=26.31 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=32.5
Q ss_pred cccHHHHHHhhCCCCHHHHHHHHhhc-CCCCeee-CCeEEEeC
Q 031345 91 YLSIKDAGQMLLFTSDQELLEYVKEE-HPEWEMK-DGFVFFQK 131 (161)
Q Consensus 91 sl~l~~a~~lL~~~~~~e~~~f~~~~-~rgW~~~-~~~i~f~~ 131 (161)
.|++++||.+|+++ .+-+.+.+.+. ...|.+. ++++.|.+
T Consensus 16 ~LTi~EaAeylgIg-~~~l~~L~~~~~~~~~~~~iG~~~lI~r 57 (70)
T 1y6u_A 16 TLTIEEASKYFRIG-ENKLRRLAEENKNANWLIMNGNRIQIKR 57 (70)
T ss_dssp EEEHHHHHHHTCSC-HHHHHHHHHHCTTCSSEEEETTEEEEES
T ss_pred eeCHHHHHHHHCcC-HHHHHHHHHcCCCCCcEEEeCCEEEEEH
Confidence 58999999999998 99999998653 4689988 55666665
No 14
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=57.57 E-value=57 Score=24.33 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=65.1
Q ss_pred cCChhHHHHHHHhcch-hhhcCccchhhHHHHHHHhhcChHHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHhHHHhcCc
Q 031345 13 QNRIAEFHTELELLSS-TALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDY 91 (161)
Q Consensus 13 qN~iaeFh~~lE~ip~-~~~~~~~I~~~v~LEq~LmeG~Y~kv~~a~~~~Ps~~~~~fm~~L~~tiR~eiA~~ie~AY~s 91 (161)
...+=+|.-+| .+|. ..+.+..-+...+|=+-.-.|+|...-...++.|. .. +.+..++|.=..-.+...-+.
T Consensus 36 ~p~vf~F~eLL-~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p~--L~---~~~~~KlrlLtL~sLa~~~~~ 109 (169)
T 3chm_A 36 HPSLFAFSEIL-ALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPH--LS---PDQILKLKQLTVLTLAESNKV 109 (169)
T ss_dssp CTTCCCCHHHH-TCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSCC--CC---HHHHHHHHHHHHHHHHHHCSE
T ss_pred CCCeeehHHHh-CChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhCcc--hH---HHHHHHHHHHHHHHHHHhCCC
Confidence 34444555444 3332 22323323667788889999999887665566673 22 566677776555555555789
Q ss_pred ccHHHHHHhhCCCCHHHHHHHHh
Q 031345 92 LSIKDAGQMLLFTSDQELLEYVK 114 (161)
Q Consensus 92 l~l~~a~~lL~~~~~~e~~~f~~ 114 (161)
||.++.++-|.++|.+|++.++-
T Consensus 110 lsy~~I~~~l~i~~~~evE~lvI 132 (169)
T 3chm_A 110 LPYDTLMVELDVSNVRELEDFLI 132 (169)
T ss_dssp EEHHHHHHHHTCCSHHHHHHHHH
T ss_pred cCHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999874
No 15
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=49.45 E-value=9.5 Score=22.72 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=24.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhcCCCCeee
Q 031345 94 IKDAGQMLLFTSDQELLEYVKEEHPEWEMK 123 (161)
Q Consensus 94 l~~a~~lL~~~~~~e~~~f~~~~~rgW~~~ 123 (161)
+.+++.+.|.++++++..|. .+.+|.++
T Consensus 9 ia~F~~iTG~~d~~~A~~~L--ea~nWDLe 36 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLL--EQNNWDLV 36 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHH--HHTTTCHH
T ss_pred HHHHHHHHCCCCHHHHHHHH--HHcCCcHH
Confidence 57889999999889999997 46799986
No 16
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=47.54 E-value=12 Score=26.37 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHHhcCcccHHHHHHhhCCC--CHHH
Q 031345 75 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFT--SDQE 108 (161)
Q Consensus 75 ~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~--~~~e 108 (161)
.|+|++|++.+.. +-++..+.+..|++. ++.+
T Consensus 10 ~T~Re~Ii~lL~~--~plta~ei~~~l~i~~~~~ke 43 (105)
T 2gmg_A 10 ATRREKIIELLLE--GDYSPSELARILDMRGKGSKK 43 (105)
T ss_dssp HHHHHHHHHHTTT--SCBCTTHHHHSSCCCSSCCHH
T ss_pred ccHHHHHHHHHHc--CCCCHHHHHHHhCCCCCChHH
Confidence 5899999999983 789999999999994 4566
No 17
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=46.54 E-value=7.1 Score=27.65 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.5
Q ss_pred hhCCCCHHHHHHHHhhcCCCCeee
Q 031345 100 MLLFTSDQELLEYVKEEHPEWEMK 123 (161)
Q Consensus 100 lL~~~~~~e~~~f~~~~~rgW~~~ 123 (161)
-|.|+|.+++++||+ ..||...
T Consensus 63 ~L~F~skE~AiayAe--k~G~~y~ 84 (108)
T 2lju_A 63 CLSFTTRELAIAYAV--AHKIDYT 84 (108)
T ss_dssp CEEESSHHHHHHHHH--HTTCEEE
T ss_pred eEecCCHHHHHHHHH--HcCCEEE
Confidence 578999999999984 6799863
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=42.55 E-value=42 Score=20.74 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhh-cCCCCee
Q 031345 75 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEM 122 (161)
Q Consensus 75 ~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~-~~rgW~~ 122 (161)
+..|.+|...+...=..++..+.|..|+++ ...+...++. ++.|+..
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEe
Confidence 446888998887644569999999999998 7777776642 3457744
No 19
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=42.07 E-value=85 Score=24.82 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcchhh-------------hcCccchhhHHHHHHHhhcChHHHHHhhhcCC--CCcHHH
Q 031345 4 GLNLLRLLVQNRIAEFHTELELLSSTA-------------LENPCIKHAVELEQSFMEGAYNRVLSAKQNVP--NETYGY 68 (161)
Q Consensus 4 gL~LL~LLsqN~iaeFh~~lE~ip~~~-------------~~~~~I~~~v~LEq~LmeG~Y~kv~~a~~~~P--s~~~~~ 68 (161)
++.+|.-++.|++.....+||.+-.-. .....-..+.++-.++..|+..+++.....+- .++...
T Consensus 166 a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~~~g~~~~~ 245 (343)
T 1jr3_D 166 ANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVI 245 (343)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHH
Confidence 456777778999999999999774311 01122235788999999999999988655332 445677
Q ss_pred HHHHHHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhhcCCCCee
Q 031345 69 FMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEM 122 (161)
Q Consensus 69 fm~~L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~~~rgW~~ 122 (161)
++..|...+|+=..-..... .. +.+++++-+++. +..+..+.+ ..++|+.
T Consensus 246 il~~l~~~~r~l~~~~~~~~-~g-~~~~i~~~l~i~-~~~~~~~~~-~~~~~s~ 295 (343)
T 1jr3_D 246 LLRTLQRELLLLVNLKRQSA-HT-PLRALFDKHRVW-QNRRGMMGE-ALNRLSQ 295 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCSS-SS-CHHHHHHHHTCC-SSHHHHHHH-HHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHcCCC-HHHHHHHHH-HHHcCCH
Confidence 78888888887443221111 12 566666666653 334443332 2345654
No 20
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=39.30 E-value=7.9 Score=27.33 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.3
Q ss_pred hhCCCCHHHHHHHHhhcCCCCeee
Q 031345 100 MLLFTSDQELLEYVKEEHPEWEMK 123 (161)
Q Consensus 100 lL~~~~~~e~~~f~~~~~rgW~~~ 123 (161)
-|.|+|.+++++||+ ..||...
T Consensus 55 ~L~F~skE~AiayAe--k~G~~y~ 76 (106)
T 2jya_A 55 KLTFETQEQAEAYAQ--RKGIEYR 76 (106)
T ss_dssp EEEESSHHHHHHHHH--HHTCEEE
T ss_pred eEecCCHHHHHHHHH--HcCCEEE
Confidence 578999999999984 5799863
No 21
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=38.19 E-value=29 Score=29.44 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=75.6
Q ss_pred HHHHHHhcCChhHHHHHHHhcchhhhcCccchh-hHHHHHHHhhcChHHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHh
Q 031345 6 NLLRLLVQNRIAEFHTELELLSSTALENPCIKH-AVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGC 84 (161)
Q Consensus 6 ~LL~LLsqN~iaeFh~~lE~ip~~~~~~~~I~~-~v~LEq~LmeG~Y~kv~~a~~~~Ps~~~~~fm~~L~~tiR~eiA~~ 84 (161)
.|+.....+++.+|-..|+........||+++. .-.|-+.+.+.++-++....+.+.-+..+..+..=.+-+-..++.+
T Consensus 261 ~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~l 340 (394)
T 3txn_A 261 SVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQM 340 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHH
Confidence 466677899999999999998777779999865 5679999999999999887666543333333333367788888888
Q ss_pred HHHhcCcccHHHHHHhhCCCCH
Q 031345 85 SEKAYDYLSIKDAGQMLLFTSD 106 (161)
Q Consensus 85 ie~AY~sl~l~~a~~lL~~~~~ 106 (161)
|...-=.=.++....++.+..+
T Consensus 341 I~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 341 ILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp HHTTSSCEEEETTTTEEEECCC
T ss_pred HHCCCeeEEEcCCCCEEEECCC
Confidence 8876655667777778777644
No 22
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=32.89 E-value=15 Score=22.78 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=16.7
Q ss_pred HHHHHH----hcCChhHHHHHHHhc
Q 031345 6 NLLRLL----VQNRIAEFHTELELL 26 (161)
Q Consensus 6 ~LL~LL----sqN~iaeFh~~lE~i 26 (161)
|||.|| ..+++++||--+..|
T Consensus 23 ~ml~LL~dikg~~dL~eF~qMl~~I 47 (56)
T 1oks_A 23 YLMTLLDDIKGANDLAKFHQMLVKI 47 (56)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccchHHHHHHHHHHH
Confidence 677777 467899999888766
No 23
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=28.75 E-value=95 Score=20.56 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhh-cCCCCeee
Q 031345 65 TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 123 (161)
Q Consensus 65 ~~~~fm~~L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~-~~rgW~~~ 123 (161)
....++..|.+..|.+|..++.. ..+++.+++..|+++ ...+...++. .+.||...
T Consensus 21 ~~~~~~~~l~~~~~~~il~~L~~--~~~s~~ela~~l~is-~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 21 QVASTLQALATPSRLMILTQLRN--GPLPVTDLAEAIGME-QSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH--CCCCHHHHHHHHSSC-HHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 45667777888889999998876 679999999999997 5555444431 13588764
No 24
>2oku_A Acyl-COA dehydrogenase family protein; the acyl-COA dehydrogenase, PSI-2, structural genomics, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.48.5.1
Probab=27.83 E-value=1.4e+02 Score=21.60 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHHHHHHhhcChHHHHHh-hhcCC-CCcHHHHHHHHHHHHHHHHHHhHH
Q 031345 40 VELEQSFMEGAYNRVLSA-KQNVP-NETYGYFMDLLAKTVRDEIAGCSE 86 (161)
Q Consensus 40 v~LEq~LmeG~Y~kv~~a-~~~~P-s~~~~~fm~~L~~tiR~eiA~~ie 86 (161)
|.==++++.|.|-..++. ....| +++..++.+ .+..+.+.-..|+.
T Consensus 3 VAAIr~ItnGtyl~~irE~y~~~~~~~el~~l~~-rl~k~~~~~ee~v~ 50 (131)
T 2oku_A 3 VAAIRHITTGTYIARIREEYQQTEVKPELQPMKE-ALARMTDRAEALIA 50 (131)
T ss_dssp HHHTHHHHHTHHHHHHHHTGGGCCCCGGGHHHHH-HHHHHHHHHHHHHH
T ss_pred eeeecccccccHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHHHH
Confidence 333478899999887777 66556 888888775 44455556665555
No 25
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.47 E-value=58 Score=22.33 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCCHH---HHHHHHhhcCCCCeee
Q 031345 69 FMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQ---ELLEYVKEEHPEWEMK 123 (161)
Q Consensus 69 fm~~L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~---e~~~f~~~~~rgW~~~ 123 (161)
|....++..++.+..-++. -..+++.++..+||++ -. .+.+|- ...||+..
T Consensus 59 ~~~~~~~~~~~~l~~~~~~-~~~it~ae~Rd~lg~s-RK~ai~lLE~~--Dr~g~TrR 112 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQE-CGSTCAADFRDRLGVG-RKLAIQILEYF--DRIGFTRR 112 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHH-HSSEEHHHHHHHHTSC-HHHHHHHHHHH--HHHTSEEE
T ss_pred ECHHHHHHHHHHHHHHHHH-CCCccHHHHHHHHCCc-HHHHHHHHHHH--hhcCCeEe
Confidence 4444555555555554443 3899999999999986 77 777775 35699998
No 26
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=26.82 E-value=82 Score=19.41 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCCCCChHHHHHHHHhHHHHhhhcC
Q 031345 137 PCKEIPSLQLINQTLSYARELERIV 161 (161)
Q Consensus 137 ~~~~~~~~~li~~~l~Ya~elE~IV 161 (161)
....++..+++..++.|-..|+.++
T Consensus 33 ~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 33 KTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999998754
No 27
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=26.12 E-value=58 Score=27.30 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHhhcCCCCeee-CCeEEEeCCCCCCCCCCCChHHH---HHHHHhHHHHh
Q 031345 102 LFTSDQELLEYVKEEHPEWEMK-DGFVFFQKAKDSAPCKEIPSLQL---INQTLSYAREL 157 (161)
Q Consensus 102 ~~~~~~e~~~f~~~~~rgW~~~-~~~i~f~~~~~~~~~~~~~~~~l---i~~~l~Ya~el 157 (161)
.+++++|+.+... ..|.+. .|.+.+.++ -+.+..+|...+ |++++.-|++-
T Consensus 231 rvd~~~e~A~i~~---~~~~lgl~~g~lvanP--IP~e~~i~~~~i~~~I~~Al~eA~~~ 285 (335)
T 4gim_A 231 RLDSASEIARAMV---VKWQSGLNGGLVVANP--IPEQFAMPEHTINAAIDQAVAEAEAQ 285 (335)
T ss_dssp EECCHHHHHHHHH---HHHHTTCCSCEEEECC--CCGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHH---HHHHcCCCCceEEeCC--CCchhcCCHHHHHHHHHHHHHHHHHc
Confidence 4578899888864 367776 566655553 234567887777 99999999873
No 28
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=25.61 E-value=35 Score=22.64 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=30.4
Q ss_pred CcccHHHHHHhhCCCCHHHHHHHHhhcCCCCeeeCCeEEEeCC
Q 031345 90 DYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKA 132 (161)
Q Consensus 90 ~sl~l~~a~~lL~~~~~~e~~~f~~~~~rgW~~~~~~i~f~~~ 132 (161)
..+|+++.++..+|++.+++..-+ ||-...|.|.|...
T Consensus 23 ~~~s~~el~k~t~l~~d~el~lAi-----GWLaREdKI~~~~~ 60 (77)
T 2l01_A 23 EGLTQKQIKKATKLKADKDFFLGL-----GWLLREDKVVTSEV 60 (77)
T ss_dssp SCEEHHHHHHHHTCSCHHHHHHHH-----HHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-----HHHhhcCceEEEee
Confidence 579999999999995577776654 99888888877653
No 29
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=25.51 E-value=1.2e+02 Score=20.68 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhh-cCCCCeee
Q 031345 65 TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 123 (161)
Q Consensus 65 ~~~~fm~~L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~-~~rgW~~~ 123 (161)
....++..|.+..|.+|...+.. ...+..+++..|+++ ...+....+. .+.||...
T Consensus 35 ~~~~~~kaL~~~~rl~IL~~L~~--~~~s~~ela~~lgis-~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 35 SLAEFFAVLADPNRLRLLSLLAR--SELCVGDLAQAIGVS-ESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 35667777888899999998863 578999999999997 6655555431 24688875
No 30
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=25.38 E-value=39 Score=27.09 Aligned_cols=70 Identities=23% Similarity=0.425 Sum_probs=42.1
Q ss_pred HHHHHHhhcChHHHHHhhhcCCCCcHHHHHHHHHH----HHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhhc
Q 031345 41 ELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAK----TVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEE 116 (161)
Q Consensus 41 ~LEq~LmeG~Y~kv~~a~~~~Ps~~~~~fm~~L~~----tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~~ 116 (161)
.+|+++|.|.||..=..+= ..++..++..+.+ ++|++-++|. ..+.+|++++.+|+.+|....
T Consensus 164 ~lE~~i~~~~fn~lGal~L---drDvr~li~~~~~~~~~~lRekF~RL~----------QI~~lLnle~~eev~d~~~~~ 230 (263)
T 3hr0_A 164 ELEKVVLKSTFNRLGGLQF---DKELRSLIAYLTTVTTWTIRDKFARLS----------QMATILNLERVTEILDYWGPN 230 (263)
T ss_dssp HHHHHHTTCCBCHHHHHHH---HHHHHHHHHHHHTTSCTTHHHHTHHHH----------HHHHHHTCSSGGGGGGTSGGG
T ss_pred HHHHHHHhCCcCchhHHHH---HHHHHHHHHHHHhccchhhhHHHHHHH----------HHHHHHcCCChHHHHHHhccc
Confidence 5788888887776522110 0134444444432 4566555544 589999999999998885321
Q ss_pred --CCCCeee
Q 031345 117 --HPEWEMK 123 (161)
Q Consensus 117 --~rgW~~~ 123 (161)
...|.+.
T Consensus 231 ~~~~~W~Ls 239 (263)
T 3hr0_A 231 SGPLTWRLT 239 (263)
T ss_dssp GTTCCCCSC
T ss_pred CCCccccCC
Confidence 1357764
No 31
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=24.86 E-value=1.2e+02 Score=19.82 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhh-cCCCCeee
Q 031345 65 TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 123 (161)
Q Consensus 65 ~~~~fm~~L~~tiR~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~-~~rgW~~~ 123 (161)
....++..|-+..|.+|...+. -..+++.+.+..++++ ...+....+. .+.||...
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS--VSEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH--HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 3455677788899999999886 3578999999999997 6655555431 24688764
No 32
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=24.44 E-value=71 Score=26.37 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=53.9
Q ss_pred cchhhHHHHHHHhhc----ChHHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHhHHHhcCcccH-HHHHHhhCCCCHHHH
Q 031345 35 CIKHAVELEQSFMEG----AYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSI-KDAGQMLLFTSDQEL 109 (161)
Q Consensus 35 ~I~~~v~LEq~LmeG----~Y~kv~~a~~~~Ps~~~~~fm~~L~~tiR~eiA~~ie~AY~sl~l-~~a~~lL~~~~~~e~ 109 (161)
++.-||++-.+|++| +|.++....-.-| +.+..+|+.+.+.+..-+-..++..=.-+-+ +.-+.+| |+++.
T Consensus 154 f~gaP~Tla~~l~~g~~s~~~~~~~~~~~~~P-e~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs~~~~L---sp~~f 229 (368)
T 4exq_A 154 FSGSPWTLACYMVEGGGSDDFRTVKSMAYARP-DLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGAL---ADGAY 229 (368)
T ss_dssp EEECHHHHHHHHHHTBCCSSCHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEETTGGGS---CTTHH
T ss_pred eCCcHHHHHHHHHcCCCcchHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccC---CHHHH
Confidence 456799999999998 4888877554445 5788899999999888888888765444333 2233333 58888
Q ss_pred HHHHh
Q 031345 110 LEYVK 114 (161)
Q Consensus 110 ~~f~~ 114 (161)
.+|+.
T Consensus 230 ~ef~~ 234 (368)
T 4exq_A 230 QRFSL 234 (368)
T ss_dssp HHHTH
T ss_pred HHHhH
Confidence 88863
No 33
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=22.64 E-value=1.1e+02 Score=24.57 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=54.0
Q ss_pred cchhhHHHHHHHhhc----ChHHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHhHHHhcCcccHHH-HHHhhCCCCHHHH
Q 031345 35 CIKHAVELEQSFMEG----AYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKD-AGQMLLFTSDQEL 109 (161)
Q Consensus 35 ~I~~~v~LEq~LmeG----~Y~kv~~a~~~~Ps~~~~~fm~~L~~tiR~eiA~~ie~AY~sl~l~~-a~~lL~~~~~~e~ 109 (161)
++.-||++-.+|++| +|.++....-.-| +....+++.+.+.+..-+-..++..-.-+-+.| .+.+ + |+++.
T Consensus 144 ~~~~P~tla~~l~~g~~~~~~~~~~~~~~~~P-e~~~~ll~~l~~~~~~~~~~~~~aGad~i~i~d~~~~~--l-sp~~f 219 (354)
T 3cyv_A 144 FSGSPWTLATYMVEGGSSKAFTVIKKMMYADP-QALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGV--L-TGRDY 219 (354)
T ss_dssp EEECHHHHHHHHHHSSCCSSCHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGG--S-CHHHH
T ss_pred eCCcHHHHHHHHhCCCCCccHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccc--C-CHHHH
Confidence 456799999999997 7777766544434 468889999999998888888876555444323 3333 3 58888
Q ss_pred HHHHh
Q 031345 110 LEYVK 114 (161)
Q Consensus 110 ~~f~~ 114 (161)
.+|+.
T Consensus 220 ~ef~~ 224 (354)
T 3cyv_A 220 QQFSL 224 (354)
T ss_dssp HHHTH
T ss_pred HHHhH
Confidence 88873
No 34
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=21.37 E-value=1.4e+02 Score=18.49 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=30.0
Q ss_pred HHHHHHhHHHhcCcccHHHHHHhhCCCCHHHHHHHHhh-cCCCCee
Q 031345 78 RDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEM 122 (161)
Q Consensus 78 R~eiA~~ie~AY~sl~l~~a~~lL~~~~~~e~~~f~~~-~~rgW~~ 122 (161)
|.+|..++... ..++..+.+..++++ ...+....+. .+.|+..
T Consensus 2 r~~Il~~L~~~-~~~s~~eLa~~lgvs-~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNRH-NGGKTAEIAEALAVT-DYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 66777777643 679999999999997 6655554421 2357776
Done!