Query 031346
Match_columns 161
No_of_seqs 137 out of 174
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 12:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12481 DUF3700: Aluminium in 100.0 5.9E-66 1.3E-70 431.5 14.7 149 2-150 1-151 (228)
2 cd01910 Wali7 This domain is p 100.0 1.5E-56 3.2E-61 374.3 15.7 148 2-151 1-148 (224)
3 cd01909 betaLS_CarA_N Glutamin 99.9 1.4E-22 3.1E-27 166.1 8.2 73 71-151 47-123 (199)
4 COG0367 AsnB Asparagine syntha 99.8 2.5E-20 5.5E-25 170.7 8.5 73 72-151 65-141 (542)
5 TIGR01536 asn_synth_AEB aspara 99.8 1E-19 2.2E-24 161.0 9.4 90 53-151 47-140 (467)
6 PRK09431 asnB asparagine synth 99.8 1.9E-19 4.1E-24 165.2 11.0 111 33-151 24-141 (554)
7 PF13537 GATase_7: Glutamine a 99.8 8.5E-20 1.8E-24 136.5 7.1 77 71-151 19-99 (125)
8 PTZ00077 asparagine synthetase 99.8 1.3E-19 2.8E-24 167.5 8.7 77 69-151 68-148 (586)
9 PLN02549 asparagine synthase ( 99.8 3.4E-19 7.4E-24 164.6 10.0 108 36-151 27-140 (578)
10 TIGR03104 trio_amidotrans aspa 99.8 3.2E-19 6.9E-24 163.9 8.9 75 70-151 64-142 (589)
11 TIGR03108 eps_aminotran_1 exos 99.8 2.5E-18 5.4E-23 157.6 10.2 75 70-151 64-142 (628)
12 cd00712 AsnB Glutamine amidotr 99.7 1.6E-17 3.4E-22 133.9 11.2 111 33-151 22-140 (220)
13 cd03766 Gn_AT_II_novel Gn_AT_I 99.7 1.6E-17 3.4E-22 132.8 7.9 70 73-151 71-142 (181)
14 cd00714 GFAT Glutamine amidotr 99.6 1.4E-15 3E-20 123.5 8.3 76 74-149 92-175 (215)
15 PF13522 GATase_6: Glutamine a 99.5 3E-14 6.6E-19 108.3 7.7 73 72-151 38-114 (133)
16 PRK00331 glucosamine--fructose 99.5 1.5E-13 3.2E-18 125.6 10.7 78 73-150 92-177 (604)
17 cd00352 Gn_AT_II Glutamine ami 99.5 2.7E-13 5.8E-18 105.9 9.5 86 65-151 88-179 (220)
18 TIGR01135 glmS glucosamine--fr 99.5 2.5E-13 5.4E-18 124.2 10.5 78 73-150 91-176 (607)
19 PRK08525 amidophosphoribosyltr 99.4 2E-13 4.4E-18 122.9 8.1 76 73-151 94-175 (445)
20 PTZ00295 glucosamine-fructose- 99.4 3.3E-13 7.2E-18 124.9 8.0 78 73-150 122-207 (640)
21 cd01907 GlxB Glutamine amidotr 99.4 1.4E-12 3E-17 108.8 8.8 75 74-151 103-204 (249)
22 KOG0571 Asparagine synthase (g 99.4 3.2E-13 7E-18 123.7 5.5 89 55-151 50-140 (543)
23 cd00715 GPATase_N Glutamine am 99.4 2E-12 4.4E-17 106.9 8.3 77 73-151 93-175 (252)
24 PRK09123 amidophosphoribosyltr 99.4 1.4E-12 3E-17 118.9 7.2 76 73-151 115-196 (479)
25 PRK07631 amidophosphoribosyltr 99.3 3.7E-12 7.9E-17 116.3 9.3 82 65-151 95-185 (475)
26 PRK06388 amidophosphoribosyltr 99.3 3.7E-12 7.9E-17 116.2 8.6 76 73-151 111-193 (474)
27 PRK08341 amidophosphoribosyltr 99.3 5E-12 1.1E-16 114.3 8.6 76 73-150 93-175 (442)
28 PRK07272 amidophosphoribosyltr 99.3 5.5E-12 1.2E-16 115.4 7.7 76 73-151 105-186 (484)
29 PRK07349 amidophosphoribosyltr 99.3 7.2E-12 1.6E-16 115.1 7.9 77 73-151 127-210 (500)
30 PTZ00394 glucosamine-fructose- 99.3 7.6E-12 1.6E-16 117.5 8.1 78 73-150 124-211 (670)
31 PRK07847 amidophosphoribosyltr 99.3 1E-11 2.2E-16 114.3 7.7 76 73-150 118-204 (510)
32 PLN02981 glucosamine:fructose- 99.3 2.1E-11 4.6E-16 114.5 9.7 78 73-150 114-205 (680)
33 PLN02440 amidophosphoribosyltr 99.3 9.5E-12 2.1E-16 113.1 7.0 73 73-151 94-175 (479)
34 PRK06781 amidophosphoribosyltr 99.3 1.7E-11 3.8E-16 111.6 8.4 76 73-151 104-185 (471)
35 PRK05793 amidophosphoribosyltr 99.1 8.2E-11 1.8E-15 106.9 7.3 77 73-151 109-190 (469)
36 TIGR01134 purF amidophosphorib 99.1 2.9E-10 6.4E-15 102.4 10.3 75 74-151 94-176 (442)
37 PRK09246 amidophosphoribosyltr 99.1 1.4E-10 3.1E-15 105.9 8.3 85 65-150 85-184 (501)
38 COG0449 GlmS Glucosamine 6-pho 98.9 2.9E-09 6.2E-14 100.2 5.8 76 74-149 92-173 (597)
39 KOG0573 Asparagine synthase [A 98.1 3.5E-06 7.7E-11 78.1 5.8 72 71-151 66-137 (520)
40 COG0034 PurF Glutamine phospho 97.8 5.9E-05 1.3E-09 69.9 7.6 95 53-150 76-181 (470)
41 cd01908 YafJ Glutamine amidotr 97.8 5.2E-05 1.1E-09 63.1 6.2 76 74-151 106-199 (257)
42 cd00713 GltS Glutamine amidotr 97.3 0.001 2.2E-08 60.8 7.9 72 77-151 226-347 (413)
43 KOG1268 Glucosamine 6-phosphat 97.0 0.00035 7.5E-09 66.4 2.4 104 45-149 73-194 (670)
44 TIGR03442 conserved hypothetic 96.9 0.0027 5.8E-08 53.7 6.2 76 74-151 109-206 (251)
45 KOG0572 Glutamine phosphoribos 96.4 0.008 1.7E-07 55.6 6.6 95 53-151 73-185 (474)
46 PF00310 GATase_2: Glutamine a 96.4 0.014 3E-07 52.3 7.9 113 28-151 176-340 (361)
47 PF09147 DUF1933: Domain of un 91.4 1.5 3.3E-05 37.1 8.4 71 71-149 44-118 (201)
48 PF13230 GATase_4: Glutamine a 88.5 1.1 2.5E-05 38.3 5.6 74 74-150 101-188 (271)
49 COG1654 BirA Biotin operon rep 62.9 5.8 0.00013 28.8 2.0 32 88-125 23-54 (79)
50 PF14871 GHL6: Hypothetical gl 52.7 30 0.00066 26.8 4.6 40 30-69 2-41 (132)
51 COG0067 GltB Glutamate synthas 45.6 34 0.00074 31.4 4.4 70 28-110 183-264 (371)
52 PF04566 RNA_pol_Rpb2_4: RNA p 43.3 51 0.0011 22.7 4.1 40 100-149 11-50 (63)
53 COG4519 Uncharacterized protei 38.7 9.1 0.0002 28.9 -0.3 45 77-121 15-77 (95)
54 PF11213 DUF3006: Protein of u 35.4 31 0.00066 23.9 2.0 28 124-151 3-30 (71)
55 PF00392 GntR: Bacterial regul 34.0 71 0.0015 20.9 3.5 42 82-134 21-63 (64)
56 COG3672 Predicted transglutami 33.5 80 0.0017 26.8 4.5 120 33-158 42-179 (191)
57 TIGR00254 GGDEF diguanylate cy 32.6 97 0.0021 21.8 4.3 58 77-139 34-92 (165)
58 PRK03996 proteasome subunit al 29.4 2.8E+02 0.006 22.8 7.0 65 27-91 22-91 (241)
59 KOG0536 Flavohemoprotein b5+b5 28.2 34 0.00074 27.9 1.4 19 71-89 79-97 (145)
60 PRK03946 pdxA 4-hydroxythreoni 28.1 50 0.0011 29.5 2.5 32 100-132 197-236 (307)
61 PRK09966 putative inner membra 27.8 75 0.0016 27.2 3.5 58 78-140 280-338 (407)
62 smart00345 HTH_GNTR helix_turn 26.5 80 0.0017 19.3 2.7 37 84-131 20-56 (60)
63 PF05357 Phage_Coat_A: Phage C 26.2 36 0.00078 24.2 1.0 21 67-87 36-56 (63)
64 COG1995 PdxA Pyridoxal phospha 25.8 1E+02 0.0022 28.1 4.1 29 99-127 220-253 (332)
65 PRK11750 gltB glutamate syntha 25.1 2.3E+02 0.0051 30.7 7.0 112 28-151 193-357 (1485)
66 PF08206 OB_RNB: Ribonuclease 25.0 40 0.00086 22.3 1.1 29 128-156 6-34 (58)
67 KOG0537 Cytochrome b5 [Energy 24.6 47 0.001 25.7 1.6 23 72-94 17-39 (124)
68 PRK01909 pdxA 4-hydroxythreoni 23.4 80 0.0017 28.5 3.0 35 99-133 217-257 (329)
69 PF08892 YqcI_YcgG: YqcI/YcgG 23.3 1.4E+02 0.0031 25.1 4.3 36 43-81 114-150 (219)
70 PF14504 CAP_assoc_N: CAP-asso 23.2 1.1E+02 0.0024 23.9 3.5 26 123-148 102-127 (141)
71 PF06794 UPF0270: Uncharacteri 22.9 85 0.0019 22.5 2.5 41 106-147 16-65 (70)
72 PRK02746 pdxA 4-hydroxythreoni 22.8 81 0.0018 28.7 2.9 30 99-128 224-260 (345)
73 cd07377 WHTH_GntR Winged helix 22.3 2E+02 0.0044 17.7 4.4 38 84-132 25-62 (66)
74 cd02056 alpha-1-antitrypsin_li 22.2 94 0.002 26.8 3.1 21 128-148 339-360 (361)
75 PHA00370 III attachment protei 21.6 68 0.0015 28.8 2.1 33 57-89 15-59 (297)
76 TIGR03338 phnR_burk phosphonat 21.2 1.7E+02 0.0038 22.9 4.2 45 81-136 31-75 (212)
77 COG1725 Predicted transcriptio 21.1 1.1E+02 0.0024 24.0 3.0 40 88-138 39-78 (125)
78 cd01912 proteasome_beta protea 21.0 2.4E+02 0.0051 21.8 4.9 49 44-92 3-57 (189)
79 cd02054 angiotensinogen Angiot 20.9 1E+02 0.0022 27.1 3.1 22 127-148 346-368 (372)
80 PRK04966 hypothetical protein; 20.7 97 0.0021 22.4 2.4 40 106-146 16-64 (72)
81 PRK00304 hypothetical protein; 20.3 98 0.0021 22.6 2.4 40 106-146 16-63 (75)
82 PF11681 DUF3277: Protein of u 20.2 2.2E+02 0.0047 23.0 4.5 35 124-158 87-121 (146)
83 cd02049 bacterial_SERPIN SERin 20.0 1.1E+02 0.0024 26.4 3.1 22 127-148 341-363 (364)
No 1
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=5.9e-66 Score=431.46 Aligned_cols=149 Identities=50% Similarity=0.856 Sum_probs=145.3
Q ss_pred cccccccccCCccccccCCCCCCC--CCCChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCCCccccceeeeCCEEEE
Q 031346 2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (161)
Q Consensus 2 LavF~k~va~~PeeL~sp~s~~~~--~~~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~~l~pr~F~~~d~i~cv 79 (161)
||||+|+||++||||+||++..++ ++|+++||+++|+++||+||||+||++++|||||++|++++||+||++|||||+
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 899999999999999999976443 699999999999999999999999999999999999999999999999999999
Q ss_pred ecceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeec
Q 031346 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVG 150 (161)
Q Consensus 80 FnGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr 150 (161)
|.|.|+|+..|||||||+|++||+++|||||||||||||||+||||++|+|+|||||||+++++||+|||+
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~ 151 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDS 151 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 2
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=1.5e-56 Score=374.27 Aligned_cols=148 Identities=64% Similarity=1.011 Sum_probs=143.1
Q ss_pred cccccccccCCccccccCCCCCCCCCCChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCCCccccceeeeCCEEEEec
Q 031346 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (161)
Q Consensus 2 LavF~k~va~~PeeL~sp~s~~~~~~~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~~l~pr~F~~~d~i~cvFn 81 (161)
||||+|+||++||||+||++.+ .++++++|+++|+++||++||+++|+++.|||+|++|++++||+|+++++++|+||
T Consensus 1 laif~~~~~~~p~el~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRT--PAKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCccc--cCCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 8999999999999999998753 36788899999999999999999999999999999999999999999999999999
Q ss_pred ceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031346 82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 82 GeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
|||||+.+||+|||+.++++|+|+||++|++||||||||+++++++|+|||||||||++++++|+||||+
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~ 148 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDAD 148 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCC
Confidence 9999999999999998999999999999999999999999999999999999999999999999999986
No 3
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.87 E-value=1.4e-22 Score=166.12 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=66.4
Q ss_pred eeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEE
Q 031346 71 AVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 71 ~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
|..++++++|||||||+.+||+++ |.. ++.+|+|||+++|+. || .+++++|+|||||+|||.+ ++|++
T Consensus 47 ~~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~---~G----~~~l~~L~G~FAfai~D~~-~~L~l 118 (199)
T cd01909 47 ARSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR---LG----LHAFRLAEGDFCFFIEDGN-GRLTL 118 (199)
T ss_pred eeCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH---Hh----HHHHHHcCEEEEEEEEcCC-CEEEE
Confidence 555889999999999999999987 333 889999999999996 78 6699999999999999999 99999
Q ss_pred Eeecc
Q 031346 147 ASVGL 151 (161)
Q Consensus 147 ARDr~ 151 (161)
||||+
T Consensus 119 aRDr~ 123 (199)
T cd01909 119 ATDHA 123 (199)
T ss_pred EECCC
Confidence 99997
No 4
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.82 E-value=2.5e-20 Score=170.71 Aligned_cols=73 Identities=23% Similarity=0.500 Sum_probs=66.2
Q ss_pred eeCCEEEEecceecCHHHHHHHhC---CC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEE
Q 031346 72 VKDEIFCLFEGALDNLGSLRQQYG---LA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (161)
Q Consensus 72 ~~d~i~cvFnGeIyN~~eLr~qyg---ls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~A 147 (161)
..+.++++|||||||+.|||+++. +. +|++|+|||+++|++ || .+|+++|+|||||+|||.++++||+|
T Consensus 65 ~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~---~g----~~~~~~l~G~fAfai~d~~~~~l~la 137 (542)
T COG0367 65 EGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEE---WG----EDCVEHLNGMFAFAIYDETRQKLFLA 137 (542)
T ss_pred CCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHHH---HH----HHHHHHhccceEEEEEECCCCEEEEE
Confidence 556699999999999999998874 44 899999999999997 66 44999999999999999999999999
Q ss_pred eecc
Q 031346 148 SVGL 151 (161)
Q Consensus 148 RDr~ 151 (161)
||||
T Consensus 138 RD~~ 141 (542)
T COG0367 138 RDPF 141 (542)
T ss_pred ecCC
Confidence 9997
No 5
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.80 E-value=1e-19 Score=160.96 Aligned_cols=90 Identities=21% Similarity=0.383 Sum_probs=74.0
Q ss_pred eEEEEecCCCCCccccceeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCcccccccc
Q 031346 53 VTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHL 128 (161)
Q Consensus 53 ~~lAys~~~~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L 128 (161)
+-|+.+.... ..+| .....+.++++|||||||+.+||+++ |.. ++.+|+|+|+++|++ || .+++++|
T Consensus 47 ~rl~i~d~~~-~~qP-~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~~---~g----~~~~~~l 117 (467)
T TIGR01536 47 RRLAIIDLSG-GAQP-MSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEE---WG----EECVDRL 117 (467)
T ss_pred EEeEEeCCCC-CCCe-eECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHHH---HH----HHHHHHc
Confidence 4455554432 2344 44555689999999999999999987 445 789999999999996 77 6799999
Q ss_pred CcceEEEEEECCCCeEEEEeecc
Q 031346 129 SGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 129 ~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
+|||||||||.++++|++||||+
T Consensus 118 ~G~fa~~i~D~~~~~l~laRD~~ 140 (467)
T TIGR01536 118 DGMFAFALWDSKKGELFLARDRF 140 (467)
T ss_pred CCcEEEEEEECCCCEEEEEECCC
Confidence 99999999999999999999986
No 6
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.80 E-value=1.9e-19 Score=165.18 Aligned_cols=111 Identities=16% Similarity=0.320 Sum_probs=82.6
Q ss_pred HHHHHhcCCCCcEEEEeCCCeEEEEecCC----CCCccccceeeeCCEEEEecceecCHHHHHHHhC--CC-CCCchHHH
Q 031346 33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQN----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--LA-KSANEVIL 105 (161)
Q Consensus 33 l~~~F~~~~~~a~s~~~g~~~~lAys~~~----~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qyg--ls-ks~sE~ev 105 (161)
+++.-.-.=|+...+...+.+.|+...-. ..--+| ++..++.++++|||||||+.+||+++. +. ++.+|+||
T Consensus 24 m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Ev 102 (554)
T PRK09431 24 MSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQP-LYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEV 102 (554)
T ss_pred HHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCC-CCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHH
Confidence 44444445566555554444445443211 111222 345678999999999999999999984 33 78999999
Q ss_pred HHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031346 106 VIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 106 vieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
|+++|++ || .+++++|+|||||||||.++++|++||||+
T Consensus 103 il~ly~~---~G----~~~~~~L~G~FAf~i~D~~~~~l~laRD~~ 141 (554)
T PRK09431 103 ILALYQE---KG----PDFLDDLDGMFAFALYDSEKDAYLIARDPI 141 (554)
T ss_pred HHHHHHH---HH----HHHHHhCCCceEEEEEECCCCEEEEEeCCC
Confidence 9999996 77 569999999999999999999999999985
No 7
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.80 E-value=8.5e-20 Score=136.46 Aligned_cols=77 Identities=26% Similarity=0.500 Sum_probs=55.4
Q ss_pred eeeCCEEEEecceecCHHHHHHHhCC---C-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEE
Q 031346 71 AVKDEIFCLFEGALDNLGSLRQQYGL---A-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 71 ~~~d~i~cvFnGeIyN~~eLr~qygl---s-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
...++++++|||+|||+.+|++++.. . ++.+|+|+++++|+.+++|| .+++++|+|+|||||||+++++||+
T Consensus 19 ~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~G~fa~v~~d~~~~~l~~ 94 (125)
T PF13537_consen 19 SEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLDGPFAFVIWDKDKKRLFL 94 (125)
T ss_dssp ------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--EEEEEEEEETTE--EEE
T ss_pred ccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEEEEEeCCCcEEEE
Confidence 46788999999999999999999843 2 78899999999999877899 7899999999999999999999999
Q ss_pred Eeecc
Q 031346 147 ASVGL 151 (161)
Q Consensus 147 ARDr~ 151 (161)
||||+
T Consensus 95 ~rD~~ 99 (125)
T PF13537_consen 95 ARDRF 99 (125)
T ss_dssp EE-TT
T ss_pred EECCC
Confidence 99985
No 8
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.80 E-value=1.3e-19 Score=167.51 Aligned_cols=77 Identities=25% Similarity=0.422 Sum_probs=68.5
Q ss_pred ceeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeE
Q 031346 69 SFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTL 144 (161)
Q Consensus 69 ~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~l 144 (161)
+...+++++++|||||||+.+||+++ |+. ++.||+|||+++|++ || .++++++|+|||||||||.++++|
T Consensus 68 ~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~---~G---~~~~l~~L~G~FAf~i~D~~~~~l 141 (586)
T PTZ00077 68 LLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKE---YG---PKDFWNHLDGMFATVIYDMKTNTF 141 (586)
T ss_pred cCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hC---HHHHHHhcCCCEEEEEEECCCCEE
Confidence 44566789999999999999999997 455 889999999999996 77 237999999999999999999999
Q ss_pred EEEeecc
Q 031346 145 FVASVGL 151 (161)
Q Consensus 145 f~ARDr~ 151 (161)
++||||+
T Consensus 142 ~~aRD~~ 148 (586)
T PTZ00077 142 FAARDHI 148 (586)
T ss_pred EEEECCC
Confidence 9999985
No 9
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.79 E-value=3.4e-19 Score=164.61 Aligned_cols=108 Identities=17% Similarity=0.281 Sum_probs=80.4
Q ss_pred HHhcCCCCcEEEEeCCCeEEEEecCC----CCCccccceeeeCCEEEEecceecCHHHHHHHhC-CC-CCCchHHHHHHH
Q 031346 36 RFLQTNSSAVSVQVGDNVTLAYTHQN----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-LA-KSANEVILVIEA 109 (161)
Q Consensus 36 ~F~~~~~~a~s~~~g~~~~lAys~~~----~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qyg-ls-ks~sE~evviea 109 (161)
.-.-.=|+...+...+.+.|+...-. +.-.+| ++..+++++++|||||||+.+||++++ .. ++.+|+|||+++
T Consensus 27 ~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~l 105 (578)
T PLN02549 27 RLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQP-LYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHL 105 (578)
T ss_pred HhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCC-cCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 33333465544444333445433211 122233 445567899999999999999999985 33 889999999999
Q ss_pred HHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031346 110 YKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 110 Y~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
|++ || .+++++|+|||||||||.++++|++||||+
T Consensus 106 y~~---~G----~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~ 140 (578)
T PLN02549 106 YEE---HG----EEFVDMLDGMFSFVLLDTRDNSFIAARDHI 140 (578)
T ss_pred HHH---HH----HHHHHhCCCceEEEEEECCCCEEEEEECCC
Confidence 996 77 569999999999999999999999999985
No 10
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.78 E-value=3.2e-19 Score=163.85 Aligned_cols=75 Identities=24% Similarity=0.473 Sum_probs=67.9
Q ss_pred eeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEE
Q 031346 70 FAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLF 145 (161)
Q Consensus 70 F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf 145 (161)
...+++++++|||||||+.|||+++ |+. ++.+|+|||+++|+. || .+++++|+|||||+|||..+++|+
T Consensus 64 ~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~---~G----~~~~~~l~G~fa~~i~d~~~~~l~ 136 (589)
T TIGR03104 64 VDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHA---WG----RDCVSRFNGMFAFAIWERDSGRLL 136 (589)
T ss_pred ECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHH---HH----HHHHHHhhcceEEEEEeCCCCEEE
Confidence 3456679999999999999999987 555 889999999999996 77 679999999999999999999999
Q ss_pred EEeecc
Q 031346 146 VASVGL 151 (161)
Q Consensus 146 ~ARDr~ 151 (161)
+||||+
T Consensus 137 laRD~~ 142 (589)
T TIGR03104 137 LARDRL 142 (589)
T ss_pred EEecCC
Confidence 999986
No 11
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.76 E-value=2.5e-18 Score=157.60 Aligned_cols=75 Identities=24% Similarity=0.521 Sum_probs=67.7
Q ss_pred eeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEE
Q 031346 70 FAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLF 145 (161)
Q Consensus 70 F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf 145 (161)
...+++++++|||||||+.|||+++ |.. ++.+|+|+|+++|++ || .+|+++|+|||||+|||..+++|+
T Consensus 64 ~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~---~g----~~~~~~l~G~fa~~~~d~~~~~l~ 136 (628)
T TIGR03108 64 FNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEE---WG----EACVERFRGMFAFALWDRNQETLF 136 (628)
T ss_pred CcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHHH---HH----HHHHHHcCCCEEEEEEECCCCEEE
Confidence 3556789999999999999999886 555 789999999999996 77 679999999999999999999999
Q ss_pred EEeecc
Q 031346 146 VASVGL 151 (161)
Q Consensus 146 ~ARDr~ 151 (161)
+||||+
T Consensus 137 ~~rD~~ 142 (628)
T TIGR03108 137 LARDRL 142 (628)
T ss_pred EEECCC
Confidence 999994
No 12
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.74 E-value=1.6e-17 Score=133.88 Aligned_cols=111 Identities=17% Similarity=0.371 Sum_probs=80.9
Q ss_pred HHHHHhcCCCCcEEEEeCCCeEEEEecCCC----CCccccceeeeCCEEEEecceecCHHHHHHHhCC---C-CCCchHH
Q 031346 33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQNE----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---A-KSANEVI 104 (161)
Q Consensus 33 l~~~F~~~~~~a~s~~~g~~~~lAys~~~~----~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qygl---s-ks~sE~e 104 (161)
++..-.-.=|++..+...+...|+.+.-.. .-.+| .....+++++++||+|||+.+|+++++. . ++.+|+|
T Consensus 22 ~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP-~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e 100 (220)
T cd00712 22 MLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQP-MVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTE 100 (220)
T ss_pred HHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCC-eEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHH
Confidence 444444444665555554444444432110 12223 2233468999999999999999998843 2 7899999
Q ss_pred HHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeecc
Q 031346 105 LVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 105 vvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
+|+++|++ || .+++++|+|+|||||||.+++++++||||+
T Consensus 101 ~l~~~~~~---~g----~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~ 140 (220)
T cd00712 101 VILHLYEE---WG----EDCLERLNGMFAFALWDKRKRRLFLARDRF 140 (220)
T ss_pred HHHHHHHH---Hh----HHHHHHhhheEEEEEEECCCCEEEEEECCC
Confidence 99999996 77 679999999999999999999999999984
No 13
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.72 E-value=1.6e-17 Score=132.84 Aligned_cols=70 Identities=23% Similarity=0.355 Sum_probs=60.4
Q ss_pred eCCEEEEecceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCC--CCccccccccCcceEEEEEECCCCeEEEEeec
Q 031346 73 KDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASVG 150 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGP--ypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr 150 (161)
.++++++|||||||+.+||+ +.+|+|+|+++|++ +|- -...+++++|+|+|||||||..++++++||||
T Consensus 71 ~~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~---~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~ 141 (181)
T cd03766 71 STGNVLQWNGELYNIDGVED------EENDTEVIFELLAN---CSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDC 141 (181)
T ss_pred CCCEEEEECCEEECcccccC------CCCHHHHHHHHHHH---HhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECC
Confidence 36899999999999999997 78899999999986 441 01136999999999999999999999999998
Q ss_pred c
Q 031346 151 L 151 (161)
Q Consensus 151 ~ 151 (161)
+
T Consensus 142 ~ 142 (181)
T cd03766 142 L 142 (181)
T ss_pred C
Confidence 6
No 14
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.62 E-value=1.4e-15 Score=123.53 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=63.8
Q ss_pred CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECCCC-eEE
Q 031346 74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKSTS-TLF 145 (161)
Q Consensus 74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~t~-~lf 145 (161)
+++++++||+|||+.+||+++ |.. ++++|+|+++++|..+.+.|+=+. .+++++|+|+|||+|||+.++ +|+
T Consensus 92 ~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~ 171 (215)
T cd00714 92 GEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIV 171 (215)
T ss_pred CCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEEE
Confidence 689999999999999999987 554 889999999999997544332111 168999999999999999875 999
Q ss_pred EEee
Q 031346 146 VASV 149 (161)
Q Consensus 146 ~ARD 149 (161)
+|||
T Consensus 172 ~~RD 175 (215)
T cd00714 172 AARN 175 (215)
T ss_pred EEEC
Confidence 9999
No 15
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.53 E-value=3e-14 Score=108.31 Aligned_cols=73 Identities=29% Similarity=0.459 Sum_probs=64.8
Q ss_pred eeCCEEEEecceecCHHHHHHHhCC---C-CCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEE
Q 031346 72 VKDEIFCLFEGALDNLGSLRQQYGL---A-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (161)
Q Consensus 72 ~~d~i~cvFnGeIyN~~eLr~qygl---s-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~A 147 (161)
..+++++++||+|+|+.+||++++. . ++.+|+|++.+++. ++| .+++++|+|+|||++||...++++++
T Consensus 38 ~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~---~~g----~~~l~~l~G~~a~~~~~~~~~~l~~~ 110 (133)
T PF13522_consen 38 RDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIH---RWG----EEALERLDGAFAFAVYDKTPNKLFLA 110 (133)
T ss_pred CCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHH---HHH----HHHHHHhcCceEEEEEEcCCCEEEEE
Confidence 3467999999999999999999843 4 78999999999985 466 77999999999999999999999999
Q ss_pred eecc
Q 031346 148 SVGL 151 (161)
Q Consensus 148 RDr~ 151 (161)
||++
T Consensus 111 rd~~ 114 (133)
T PF13522_consen 111 RDPL 114 (133)
T ss_pred EcCC
Confidence 9987
No 16
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.49 E-value=1.5e-13 Score=125.61 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=66.0
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECCC-CeE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-STL 144 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~t-~~l 144 (161)
.+++.+++||+|||+.+||+++ |+. ++++|+|||+++|..+.++|.=+. .+++++|+|+|||+|||..+ +++
T Consensus 92 ~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l 171 (604)
T PRK00331 92 SGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDTI 171 (604)
T ss_pred CCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCEE
Confidence 4789999999999999999987 554 889999999999997655552111 36899999999999999998 999
Q ss_pred EEEeec
Q 031346 145 FVASVG 150 (161)
Q Consensus 145 f~ARDr 150 (161)
++|||.
T Consensus 172 ~~~Rd~ 177 (604)
T PRK00331 172 VAARNG 177 (604)
T ss_pred EEEECC
Confidence 999994
No 17
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.47 E-value=2.7e-13 Score=105.86 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=68.2
Q ss_pred ccccceeeeCCEEEEecceecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhhhcCC--CCccccccccCcceEEEEEE
Q 031346 65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYD 138 (161)
Q Consensus 65 l~pr~F~~~d~i~cvFnGeIyN~~eLr~qyg---l-sks~sE~evvieaY~~lRdrGP--ypadqvv~~L~GmFAFvI~D 138 (161)
.||-.... +++++++||+|+|+.+||+++. . .++.||+|+++.+|..+.+.+. --..+++++++|.|||+|||
T Consensus 88 ~hPf~~~~-~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d 166 (220)
T cd00352 88 AQPFRSED-GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWD 166 (220)
T ss_pred CCCcCcCC-CCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEE
Confidence 45533333 6999999999999999998874 2 3889999999999997432221 00146899999999999999
Q ss_pred CCCCeEEEEeecc
Q 031346 139 KSTSTLFVASVGL 151 (161)
Q Consensus 139 ~~t~~lf~ARDr~ 151 (161)
..+++|+++||++
T Consensus 167 ~~~~~l~~~rd~~ 179 (220)
T cd00352 167 GKPDRLFAARDRF 179 (220)
T ss_pred CCCCEEEEEECCC
Confidence 9999999999985
No 18
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.47 E-value=2.5e-13 Score=124.19 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=63.8
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---cccccccCcceEEEEEECCC-CeE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-STL 144 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa---dqvv~~L~GmFAFvI~D~~t-~~l 144 (161)
.+.+.+++||+|||+.+||+++ |+. ++++|+|||+++|..+.+.|+=+. .+++++|+|+|||+|||... +++
T Consensus 91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l 170 (607)
T TIGR01135 91 GGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETL 170 (607)
T ss_pred CCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEE
Confidence 3678999999999999999987 455 888999999999997544332110 16899999999999999887 469
Q ss_pred EEEeec
Q 031346 145 FVASVG 150 (161)
Q Consensus 145 f~ARDr 150 (161)
+++||.
T Consensus 171 ~~~Rd~ 176 (607)
T TIGR01135 171 VAARSG 176 (607)
T ss_pred EEEECC
Confidence 999993
No 19
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.45 E-value=2e-13 Score=122.86 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=61.8
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--ccccccccCcceEEEEEECCCCeEEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp--adqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
.++++++|||+|||+.+||+++ |.. +|+||+|||+++|....+ +... ..+++++|+|+|||+++|. +++++
T Consensus 94 ~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~~ea~~~~~~~L~G~fa~vi~~~--~~l~~ 170 (445)
T PRK08525 94 LGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESLKDRIIEALKKIIGAYCLVLLSR--SKMFA 170 (445)
T ss_pred CCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCCceEEEEEeC--CEEEE
Confidence 4789999999999999999887 555 889999999999986321 1000 1358999999999999996 68999
Q ss_pred Eeecc
Q 031346 147 ASVGL 151 (161)
Q Consensus 147 ARDr~ 151 (161)
+||++
T Consensus 171 ~RD~~ 175 (445)
T PRK08525 171 IRDPH 175 (445)
T ss_pred EECCC
Confidence 99973
No 20
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.42 E-value=3.3e-13 Score=124.93 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=65.2
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC---ccccccccCcceEEEEEECC-CCeE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP---PNHVVGHLSGYFAFIVYDKS-TSTL 144 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp---adqvv~~L~GmFAFvI~D~~-t~~l 144 (161)
.+++.+++||+|||+.+||+++ |.. ++++|+|||+++|....++|.-+ ..+++++|+|+|||+|||++ .++|
T Consensus 122 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l 201 (640)
T PTZ00295 122 KKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSL 201 (640)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEE
Confidence 3789999999999999999987 555 88999999999988655566211 12689999999999999987 5899
Q ss_pred EEEeec
Q 031346 145 FVASVG 150 (161)
Q Consensus 145 f~ARDr 150 (161)
+++||+
T Consensus 202 ~~~Rd~ 207 (640)
T PTZ00295 202 IVARNG 207 (640)
T ss_pred EEEECC
Confidence 999996
No 21
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.39 E-value=1.4e-12 Score=108.83 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=61.2
Q ss_pred CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhh-hcCCCCcc----------------------cccc
Q 031346 74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALR-DRAPYPPN----------------------HVVG 126 (161)
Q Consensus 74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lR-drGPypad----------------------qvv~ 126 (161)
.++++++||+|||+.+||+++ |.. +++||+|++++.|..+. ++| .+.+ .+++
T Consensus 103 ~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g-~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~ 181 (249)
T cd01907 103 GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGG-LPLEYYKHIIRMPEEERELLLALRLTYRLA 181 (249)
T ss_pred CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCC-ChHHHHHHHhcCCHhHHHHHHHHHHHhCcc
Confidence 489999999999999999886 444 88999999999987543 345 2222 5889
Q ss_pred ccCcceEEEEEECCCCeEEEEeecc
Q 031346 127 HLSGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 127 ~L~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
+|+|+|||+++|. +.++++|||+
T Consensus 182 ~l~G~~a~~~~~~--~~~~~~RD~~ 204 (249)
T cd01907 182 DLDGPFTIIVGTP--DGFIVIRDRI 204 (249)
T ss_pred cCCCCEEEEEEeC--CeEEEEecCC
Confidence 9999999999996 4589999985
No 22
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.39 E-value=3.2e-13 Score=123.73 Aligned_cols=89 Identities=18% Similarity=0.292 Sum_probs=73.7
Q ss_pred EEEecCCCCCccccceeeeCCEEEEecceecCHHHHHHHhC-CC-CCCchHHHHHHHHHHhhhcCCCCccccccccCcce
Q 031346 55 LAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-LA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYF 132 (161)
Q Consensus 55 lAys~~~~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qyg-ls-ks~sE~evvieaY~~lRdrGPypadqvv~~L~GmF 132 (161)
||..-. .+--|..+..+..+.|..||||||+.+||+..- +. +|.+|.|+||+.|+. ++-.|+..-|+|||
T Consensus 50 LAIvdp--~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~k------hg~~~~~~~LDG~F 121 (543)
T KOG0571|consen 50 LAIVDP--TSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYEK------HGGEQAICMLDGVF 121 (543)
T ss_pred eeEecC--CcCCcccccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHhh------cCchhHHHHhhhhe
Confidence 444433 233444788889999999999999999998874 55 777888899999997 33378999999999
Q ss_pred EEEEEECCCCeEEEEeecc
Q 031346 133 AFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 133 AFvI~D~~t~~lf~ARDr~ 151 (161)
||+++|.+..++.+|||.+
T Consensus 122 afvl~d~~~~kv~~aRDpi 140 (543)
T KOG0571|consen 122 AFVLLDTKDDKVVAARDPI 140 (543)
T ss_pred EEEEecCCCCeEEeccCCc
Confidence 9999999999999999975
No 23
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.36 E-value=2e-12 Score=106.94 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=61.2
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC-c-cccccccCcceEEEEEECCCCeEEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP-P-NHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp-a-dqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
.+++++++||+|||+.+||+++ |.. ++.||+|+++++|..+.+.+.+. + .+++++|+|+|||++||. ++|++
T Consensus 93 ~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~~ 170 (252)
T cd00715 93 LGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLIA 170 (252)
T ss_pred CCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEEE
Confidence 4789999999999999999887 333 78899999999998632110000 0 158999999999999998 99999
Q ss_pred Eeecc
Q 031346 147 ASVGL 151 (161)
Q Consensus 147 ARDr~ 151 (161)
+||++
T Consensus 171 ~RD~~ 175 (252)
T cd00715 171 VRDPH 175 (252)
T ss_pred EECCC
Confidence 99973
No 24
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.35 E-value=1.4e-12 Score=118.90 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=62.0
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--ccccccccCcceEEEEEECCCCeEEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp--adqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
.+++++++||+|||+.+||+++ |.. +++||+|||+++|..... +.+. ..+++++|+|+|||+|||. ++|++
T Consensus 115 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~~eai~~~~~~L~G~ya~vil~~--~~l~a 191 (479)
T PRK09123 115 FGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASFLDRFIDALRQVEGAYSLVALTN--TKLIG 191 (479)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhcceeEEEEEC--CEEEE
Confidence 4789999999999999999987 444 889999999999985321 1111 0458999999999999997 68999
Q ss_pred Eeecc
Q 031346 147 ASVGL 151 (161)
Q Consensus 147 ARDr~ 151 (161)
+||++
T Consensus 192 ~RD~~ 196 (479)
T PRK09123 192 ARDPL 196 (479)
T ss_pred EECCC
Confidence 99985
No 25
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.34 E-value=3.7e-12 Score=116.30 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=64.7
Q ss_pred ccccce-eeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc----cccccccCcceEEE
Q 031346 65 LRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP----NHVVGHLSGYFAFI 135 (161)
Q Consensus 65 l~pr~F-~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa----dqvv~~L~GmFAFv 135 (161)
.||-.+ ...+++++++||+|||+.+||+++ |.. ++++|+|||+++|.. ++.... ..++++|+|+|||+
T Consensus 95 ~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~---~~~~~~~eai~~~~~~l~G~yalv 171 (475)
T PRK07631 95 VQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKR---SGAPTLKEQIKNALSMLKGAYAFL 171 (475)
T ss_pred cCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHhCCCCceee
Confidence 455322 234789999999999999999887 555 889999999999986 331111 25889999999999
Q ss_pred EEECCCCeEEEEeecc
Q 031346 136 VYDKSTSTLFVASVGL 151 (161)
Q Consensus 136 I~D~~t~~lf~ARDr~ 151 (161)
|||. +.+++|||++
T Consensus 172 i~~~--~~l~aaRDp~ 185 (475)
T PRK07631 172 LMTE--TELYVALDPN 185 (475)
T ss_pred EEeC--CEEEEEECCC
Confidence 9996 6799999975
No 26
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.33 E-value=3.7e-12 Score=116.19 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=62.4
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhh-hcCCCC--ccccccccCcceEEEEEECCCCeEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALR-DRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLF 145 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lR-drGPyp--adqvv~~L~GmFAFvI~D~~t~~lf 145 (161)
.+++.+++||+|||+.+||+++ |.. ++++|+|||+++|.... .+| +. ..+++++|+|+|||+|.+. ++|+
T Consensus 111 ~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~-~~eai~~~~~~l~G~ya~vi~~~--~~l~ 187 (474)
T PRK06388 111 LGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYG-LKEGFERSMERLRGAYACALMIN--DRLY 187 (474)
T ss_pred CCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHHhccCceeEEEEEC--CEEE
Confidence 4689999999999999999987 555 88999999999996432 333 11 1358999999999999976 7899
Q ss_pred EEeecc
Q 031346 146 VASVGL 151 (161)
Q Consensus 146 ~ARDr~ 151 (161)
++||++
T Consensus 188 a~RDp~ 193 (474)
T PRK06388 188 AIRDPN 193 (474)
T ss_pred EEECCC
Confidence 999986
No 27
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.32 E-value=5e-12 Score=114.34 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=60.0
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHH-HhhhcCCCC--ccccccccCcceEEEEEECCCCeEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYK-ALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLF 145 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~-~lRdrGPyp--adqvv~~L~GmFAFvI~D~~t~~lf 145 (161)
.+.+.+++||+|||+.+||+++ |.. +|+||+|||++... .++++|..- ..+++++|+|+|||+|.+. ++|+
T Consensus 93 ~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~ 170 (442)
T PRK08341 93 GYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKII 170 (442)
T ss_pred CCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEE
Confidence 3689999999999999999887 555 88899999977543 233456210 1247899999999999986 7899
Q ss_pred EEeec
Q 031346 146 VASVG 150 (161)
Q Consensus 146 ~ARDr 150 (161)
++||+
T Consensus 171 a~RD~ 175 (442)
T PRK08341 171 VARDP 175 (442)
T ss_pred EEEcC
Confidence 99997
No 28
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.30 E-value=5.5e-12 Score=115.37 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=61.5
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--ccccccccCcceEEEEEECCCCeEEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPyp--adqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
.+++++++||+|||+.+||+++ |.. +++||+|||+++|..... +.+. ..+++++|+|+|||+|+|. ++|++
T Consensus 105 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~~i~~~--~~l~a 181 (484)
T PRK07272 105 DMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTFMGKLKEALNTVKGGFAYLLLTE--DKLIA 181 (484)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHccCceeEEEEEC--CEEEE
Confidence 5789999999999999999987 555 889999999999985221 1000 1368899999999999996 68999
Q ss_pred Eeecc
Q 031346 147 ASVGL 151 (161)
Q Consensus 147 ARDr~ 151 (161)
+||++
T Consensus 182 ~RDp~ 186 (484)
T PRK07272 182 ALDPN 186 (484)
T ss_pred EECCC
Confidence 99964
No 29
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.29 E-value=7.2e-12 Score=115.07 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=63.2
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcC-CCC--ccccccccCcceEEEEEECCCCeEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRA-PYP--PNHVVGHLSGYFAFIVYDKSTSTLF 145 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrG-Pyp--adqvv~~L~GmFAFvI~D~~t~~lf 145 (161)
.+++++++||+|||+.+||+++ |.. +++||+|||+++|....+.| .|. ..+++++|+|+|||+|.|. ++|+
T Consensus 127 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~ 204 (500)
T PRK07349 127 LGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTP--EGLM 204 (500)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEE
Confidence 4789999999999999999987 555 88999999999998644333 222 1358899999999999875 6799
Q ss_pred EEeecc
Q 031346 146 VASVGL 151 (161)
Q Consensus 146 ~ARDr~ 151 (161)
++||++
T Consensus 205 aaRDp~ 210 (500)
T PRK07349 205 GVRDPN 210 (500)
T ss_pred EEECCC
Confidence 999986
No 30
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.28 E-value=7.6e-12 Score=117.54 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=61.9
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHH-hhhcCCCCc----cccccccCcceEEEEEECC-CC
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA-LRDRAPYPP----NHVVGHLSGYFAFIVYDKS-TS 142 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~-lRdrGPypa----dqvv~~L~GmFAFvI~D~~-t~ 142 (161)
.+++++++||+||||.+||+++ |.. +|+||+|||++.... +++||.... .+++++|+|||||+|.+.. -+
T Consensus 124 ~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~ 203 (670)
T PTZ00394 124 NGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPG 203 (670)
T ss_pred CCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCC
Confidence 5789999999999999999987 555 889999999965332 124662111 2789999999999999654 49
Q ss_pred eEEEEeec
Q 031346 143 TLFVASVG 150 (161)
Q Consensus 143 ~lf~ARDr 150 (161)
++++|||.
T Consensus 204 ~l~~~Rd~ 211 (670)
T PTZ00394 204 QLAASRKG 211 (670)
T ss_pred EEEEEEcC
Confidence 99999996
No 31
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.26 E-value=1e-11 Score=114.32 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=62.1
Q ss_pred eCCEEEEecceecCHHHHHHHh---CC------CCCCchHHHHHHHHHHhhhcCCCCc--cccccccCcceEEEEEECCC
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALRDRAPYPP--NHVVGHLSGYFAFIVYDKST 141 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gl------sks~sE~evvieaY~~lRdrGPypa--dqvv~~L~GmFAFvI~D~~t 141 (161)
.+++.+++||+|||+.+||+++ |. -+++||+|||++++..+.+.|.+.. .+++++|+|+|||+|||.
T Consensus 118 ~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~-- 195 (510)
T PRK07847 118 GGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE-- 195 (510)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--
Confidence 5789999999999999999987 53 2789999999999986432221111 258999999999999996
Q ss_pred CeEEEEeec
Q 031346 142 STLFVASVG 150 (161)
Q Consensus 142 ~~lf~ARDr 150 (161)
++|+++||+
T Consensus 196 ~~L~aaRDp 204 (510)
T PRK07847 196 HTLYAARDP 204 (510)
T ss_pred CEEEEEECC
Confidence 689999997
No 32
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.26 E-value=2.1e-11 Score=114.49 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=62.9
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHH-hhhcCCC-C---c----cccccccCcceEEEEEEC
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA-LRDRAPY-P---P----NHVVGHLSGYFAFIVYDK 139 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~-lRdrGPy-p---a----dqvv~~L~GmFAFvI~D~ 139 (161)
.+.+.+++||+|||+.+||+++ |.. +|++|+|||+++... +++||+. + . .+++++|+|+|||+|.++
T Consensus 114 ~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~ 193 (680)
T PLN02981 114 GNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSP 193 (680)
T ss_pred CCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEec
Confidence 4789999999999999999987 555 889999999998332 2246642 1 1 158999999999999997
Q ss_pred CC-CeEEEEeec
Q 031346 140 ST-STLFVASVG 150 (161)
Q Consensus 140 ~t-~~lf~ARDr 150 (161)
.. +++++|||.
T Consensus 194 ~~~~~i~~~r~~ 205 (680)
T PLN02981 194 HYPNELVACKRG 205 (680)
T ss_pred CCCCeEEEEecC
Confidence 75 999999993
No 33
>PLN02440 amidophosphoribosyltransferase
Probab=99.26 E-value=9.5e-12 Score=113.14 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=61.2
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhh-----hcCCCCccccccccCcceEEEEEECCCCe
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALR-----DRAPYPPNHVVGHLSGYFAFIVYDKSTST 143 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lR-----drGPypadqvv~~L~GmFAFvI~D~~t~~ 143 (161)
.+++++++||+|+|+.+||+++ |.. +++||+|+|+++|.... +++ .+++++|+|+|||+|||. ++
T Consensus 94 ~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~----~~~~~~l~G~fa~vi~~~--~~ 167 (479)
T PLN02440 94 FGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRI----VDACEKLKGAYSMVFLTE--DK 167 (479)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHH----HHHHHHhccceeeeEEEC--CE
Confidence 3579999999999999999987 443 78899999999997531 233 568999999999999996 46
Q ss_pred EEEEeecc
Q 031346 144 LFVASVGL 151 (161)
Q Consensus 144 lf~ARDr~ 151 (161)
|+++||++
T Consensus 168 l~a~RD~~ 175 (479)
T PLN02440 168 LVAVRDPH 175 (479)
T ss_pred EEEEECCC
Confidence 99999976
No 34
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.25 E-value=1.7e-11 Score=111.65 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=61.1
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCC--CccccccccCcceEEEEEECCCCeEEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPY--PPNHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPy--padqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
.+++++++||+|||+.+||+++ |.. +++||+|||+++|..... +.+ -...++++|+|+|||+++|. +++++
T Consensus 104 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a 180 (471)
T PRK06781 104 DHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-DSLIESVKEALNKVKGAFAYLLLTG--NEMIV 180 (471)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCcEEEEEEEC--CEEEE
Confidence 5789999999999999999997 444 889999999999985221 100 01356899999999999996 78999
Q ss_pred Eeecc
Q 031346 147 ASVGL 151 (161)
Q Consensus 147 ARDr~ 151 (161)
|||++
T Consensus 181 aRD~~ 185 (471)
T PRK06781 181 ALDPN 185 (471)
T ss_pred EECCC
Confidence 99984
No 35
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.15 E-value=8.2e-11 Score=106.85 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=61.6
Q ss_pred eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCC-CccccccccCcceEEEEEECCCCeEEEE
Q 031346 73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPY-PPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (161)
Q Consensus 73 ~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPy-padqvv~~L~GmFAFvI~D~~t~~lf~A 147 (161)
.+++.+++||+|+|+.+||+++ |.. +++||+|+|++++....+.++- -..+++++|+|+|||+++|. ++++++
T Consensus 109 ~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~ 186 (469)
T PRK05793 109 LGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIGV 186 (469)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEEE
Confidence 4789999999999999999987 444 7889999999999863221100 00258999999999999986 789999
Q ss_pred eecc
Q 031346 148 SVGL 151 (161)
Q Consensus 148 RDr~ 151 (161)
||++
T Consensus 187 RD~~ 190 (469)
T PRK05793 187 RDPH 190 (469)
T ss_pred ECCC
Confidence 9974
No 36
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.13 E-value=2.9e-10 Score=102.36 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=59.7
Q ss_pred CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc----cccccccCcceEEEEEECCCCeEE
Q 031346 74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP----NHVVGHLSGYFAFIVYDKSTSTLF 145 (161)
Q Consensus 74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa----dqvv~~L~GmFAFvI~D~~t~~lf 145 (161)
+++.+++||+|+|+.+||+++ |.. ++.+|+|+|+++|......+ ... .+++++|+|+|||++||. ++|+
T Consensus 94 ~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~-~~~~~ai~~~~~~l~G~falvi~~~--~~L~ 170 (442)
T TIGR01134 94 GGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEE-DDLFEAIARVLKRVRGAYALVIMIG--DGLI 170 (442)
T ss_pred CCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhccc-CCHHHHHHHHHHHhCccceEEEEEC--CEEE
Confidence 459999999999999999887 433 78899999999998632101 011 258899999999999974 6899
Q ss_pred EEeecc
Q 031346 146 VASVGL 151 (161)
Q Consensus 146 ~ARDr~ 151 (161)
++||++
T Consensus 171 a~RD~~ 176 (442)
T TIGR01134 171 AVRDPH 176 (442)
T ss_pred EEECCC
Confidence 999974
No 37
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.13 E-value=1.4e-10 Score=105.93 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=61.7
Q ss_pred ccccceeeeCCEEEEecceecCHHHHHHHh----CCC-CCCchHHHHHHHHHHhhhc--C--CCCcc------ccccccC
Q 031346 65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQY----GLA-KSANEVILVIEAYKALRDR--A--PYPPN------HVVGHLS 129 (161)
Q Consensus 65 l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy----gls-ks~sE~evvieaY~~lRdr--G--Pypad------qvv~~L~ 129 (161)
.||=.....+++.+++||+|||+.+||+++ |.. +++||+|||+++|....+. | +=+.+ +++++|+
T Consensus 85 ~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~ 164 (501)
T PRK09246 85 AQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVR 164 (501)
T ss_pred CCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcc
Confidence 355222233459999999999999999886 222 8899999999999863222 2 00112 6899999
Q ss_pred cceEEEEEECCCCeEEEEeec
Q 031346 130 GYFAFIVYDKSTSTLFVASVG 150 (161)
Q Consensus 130 GmFAFvI~D~~t~~lf~ARDr 150 (161)
|+|||++|. ..++|+++||+
T Consensus 165 Gays~v~~~-~~~~l~a~RDp 184 (501)
T PRK09246 165 GAYAVVAMI-IGHGLVAFRDP 184 (501)
T ss_pred cceeeEEEe-cCCcEEEEECC
Confidence 999999984 34569999996
No 38
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=2.9e-09 Score=100.22 Aligned_cols=76 Identities=18% Similarity=0.366 Sum_probs=63.6
Q ss_pred CCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc-cccccccCcceEEEEEECCC-CeEEEE
Q 031346 74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP-NHVVGHLSGYFAFIVYDKST-STLFVA 147 (161)
Q Consensus 74 d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdrGPypa-dqvv~~L~GmFAFvI~D~~t-~~lf~A 147 (161)
+++.+|-||-|.||.+||++| |+. +|+||||||-++....-+.|..-+ .+++++|+|.||+++-|+.. .++++|
T Consensus 92 ~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~a 171 (597)
T COG0449 92 GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAA 171 (597)
T ss_pred CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEE
Confidence 999999999999999999998 676 999999999998875444441111 36899999999999999987 789999
Q ss_pred ee
Q 031346 148 SV 149 (161)
Q Consensus 148 RD 149 (161)
|-
T Consensus 172 r~ 173 (597)
T COG0449 172 RK 173 (597)
T ss_pred cC
Confidence 84
No 39
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=98.14 E-value=3.5e-06 Score=78.13 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=56.6
Q ss_pred eeeCCEEEEecceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEeec
Q 031346 71 AVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVG 150 (161)
Q Consensus 71 ~~~d~i~cvFnGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARDr 150 (161)
-+++.++..|||||||-. .+.+.+|+..|.+.-..+++-| ..-++++.++|.|||++||.++++||..||+
T Consensus 66 v~d~~~vfl~NGeIyn~~-------~s~~~~d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~ 136 (520)
T KOG0573|consen 66 VEDDRYVFLFNGEIYNGE-------KSDTLFDTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDD 136 (520)
T ss_pred ecccceEEEecceeccCC-------CccccchHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEeccc
Confidence 344448899999999953 2455668888888888777544 2335778899999999999999999999997
Q ss_pred c
Q 031346 151 L 151 (161)
Q Consensus 151 ~ 151 (161)
+
T Consensus 137 ~ 137 (520)
T KOG0573|consen 137 I 137 (520)
T ss_pred c
Confidence 5
No 40
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.82 E-value=5.9e-05 Score=69.86 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=68.8
Q ss_pred eEEEEecCCCCC---ccc--cceeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhc-CCCC-c
Q 031346 53 VTLAYTHQNESP---LRQ--RSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDR-APYP-P 121 (161)
Q Consensus 53 ~~lAys~~~~~~---l~p--r~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~lRdr-GPyp-a 121 (161)
+..-|+-+..+. .+| ..+. .+.+.++.||.|-|..+||+++ |.- .+++|+||+++++..=+++ +... .
T Consensus 76 GHvRYsTaG~s~~~naQP~~~~~~-~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~ 154 (470)
T COG0034 76 GHVRYSTAGSSSIENAQPFYVNSP-GGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAV 154 (470)
T ss_pred eEeeecCCCCcccccccceEEecC-CCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHH
Confidence 557787766441 233 1122 3569999999999999999997 444 7889999999999853321 1000 1
Q ss_pred cccccccCcceEEEEEECCCCeEEEEeec
Q 031346 122 NHVVGHLSGYFAFIVYDKSTSTLFVASVG 150 (161)
Q Consensus 122 dqvv~~L~GmFAFvI~D~~t~~lf~ARDr 150 (161)
.++++++.|-||+++-.+. .|+.+||.
T Consensus 155 ~~~~~~v~G~ys~v~~~~~--~lia~RDP 181 (470)
T COG0034 155 KEVLRRVKGAYALVALIKD--GLIAVRDP 181 (470)
T ss_pred HHHHhhcCCcEEEEEEECC--eEEEEECC
Confidence 3577899999999999875 99999994
No 41
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=97.79 E-value=5.2e-05 Score=63.08 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=56.8
Q ss_pred CCEEEEecceecCHHHHHHHhC----C-CCCCchHHHHHHHHHHh-hhcCCCC-------ccccccccC-----cceEEE
Q 031346 74 DEIFCLFEGALDNLGSLRQQYG----L-AKSANEVILVIEAYKAL-RDRAPYP-------PNHVVGHLS-----GYFAFI 135 (161)
Q Consensus 74 d~i~cvFnGeIyN~~eLr~qyg----l-sks~sE~evvieaY~~l-RdrGPyp-------adqvv~~L~-----GmFAFv 135 (161)
++++++.||.|+|+.+||..+. . -+++||+|++.+..... ++.++-+ ..+.++.|+ |.++|+
T Consensus 106 ~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~n~~ 185 (257)
T cd01908 106 GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLNLL 185 (257)
T ss_pred CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCcCeEEEEE
Confidence 3899999999999999998762 2 27788888888777543 3333210 134677888 789999
Q ss_pred EEECCCCeEEEEeecc
Q 031346 136 VYDKSTSTLFVASVGL 151 (161)
Q Consensus 136 I~D~~t~~lf~ARDr~ 151 (161)
+-|. .+++++||+.
T Consensus 186 ~~dg--~~l~a~r~~~ 199 (257)
T cd01908 186 LSDG--EYLIATRYAS 199 (257)
T ss_pred EECC--CEEEEEEeCC
Confidence 8886 7799999985
No 42
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=97.28 E-value=0.001 Score=60.80 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=55.2
Q ss_pred EEEecceecCHHHHHHHhC---------------------CCCCCchHHHHHHHHHHhhhcCCCCcc-------------
Q 031346 77 FCLFEGALDNLGSLRQQYG---------------------LAKSANEVILVIEAYKALRDRAPYPPN------------- 122 (161)
Q Consensus 77 ~cvFnGeIyN~~eLr~qyg---------------------lsks~sE~evvieaY~~lRdrGPypad------------- 122 (161)
+++.||||+|+..+|.... ...+.||++++.++...|-..|. +..
T Consensus 226 ~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~-~l~~A~~mliPeaw~~ 304 (413)
T cd00713 226 YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGR-SLPEAMMMLIPEAWQN 304 (413)
T ss_pred eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCC-CHHHHHHHhCChhhcc
Confidence 4899999999999996531 12468888899998876665553 332
Q ss_pred ----------------ccccccCcceEEEEEECCCCeEEEEeecc
Q 031346 123 ----------------HVVGHLSGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 123 ----------------qvv~~L~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
.+.+.++|-||+++-|. +.+.++|||.
T Consensus 305 ~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrn 347 (413)
T cd00713 305 NPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRN 347 (413)
T ss_pred CccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCC
Confidence 23478999999999885 6899999985
No 43
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=97.03 E-value=0.00035 Score=66.43 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=69.7
Q ss_pred EEEEeCCCeEEEEec-------CCCCCccccceeeeCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHh
Q 031346 45 VSVQVGDNVTLAYTH-------QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKAL 113 (161)
Q Consensus 45 ~s~~~g~~~~lAys~-------~~~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~l 113 (161)
.+..|-..+.+|-+. +..|.--+|+ .-.++...|.||-|-||.+||..+ |+. .++||||++-..|+.+
T Consensus 73 l~~~f~sH~gIAHTRWATHGvPs~~NsHP~rS-d~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~ 151 (670)
T KOG1268|consen 73 LDEKFISHCGIAHTRWATHGVPSEVNCHPHRS-DPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHI 151 (670)
T ss_pred cceeeeeeeeeeeeehhhcCCCCccCCCCCcC-CCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHH
Confidence 444455556666542 2222222232 233566677999999999999765 776 7788888998888865
Q ss_pred hhcCCC--C----ccccccccCcceEEEEEECC-CCeEEEEee
Q 031346 114 RDRAPY--P----PNHVVGHLSGYFAFIVYDKS-TSTLFVASV 149 (161)
Q Consensus 114 RdrGPy--p----adqvv~~L~GmFAFvI~D~~-t~~lf~ARD 149 (161)
-|.-|- - .++|+++|+|.||+++=-+. -+++...|+
T Consensus 152 ~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr 194 (670)
T KOG1268|consen 152 YDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARK 194 (670)
T ss_pred HhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeecc
Confidence 554421 0 57899999999999875432 477777777
No 44
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=96.87 E-value=0.0027 Score=53.66 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=55.3
Q ss_pred CCEEEEecceecCHH-----HHHHHh---CC--CCCCchHHHHHHHHHHh-hhcCCCCcc----ccccccCcc-------
Q 031346 74 DEIFCLFEGALDNLG-----SLRQQY---GL--AKSANEVILVIEAYKAL-RDRAPYPPN----HVVGHLSGY------- 131 (161)
Q Consensus 74 d~i~cvFnGeIyN~~-----eLr~qy---gl--sks~sE~evvieaY~~l-RdrGPypad----qvv~~L~Gm------- 131 (161)
++++++.||.|.|+. +||+++ |+ -+++||+|++....... ++.+|.... ++++.|.|.
T Consensus 109 g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~ 188 (251)
T TIGR03442 109 GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILFSAAAAPRVR 188 (251)
T ss_pred CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhCcccc
Confidence 789999999999997 566554 32 36788888888777654 343333322 466667777
Q ss_pred eEEEEEECCCCeEEEEeecc
Q 031346 132 FAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 132 FAFvI~D~~t~~lf~ARDr~ 151 (161)
|.|++=|. .+|++.||.-
T Consensus 189 ~n~~~sdg--~~l~a~R~~~ 206 (251)
T TIGR03442 189 LNLLLTDG--SRLVATRWAD 206 (251)
T ss_pred eEEEEEcC--CEEEEEEeCC
Confidence 99999984 8899889963
No 45
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.008 Score=55.62 Aligned_cols=95 Identities=19% Similarity=0.348 Sum_probs=64.7
Q ss_pred eEEEEecCCCC---Cccccceee---eCCEEEEecceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHh-----h-hc
Q 031346 53 VTLAYTHQNES---PLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKAL-----R-DR 116 (161)
Q Consensus 53 ~~lAys~~~~~---~l~pr~F~~---~d~i~cvFnGeIyN~~eLr~qy---gls-ks~sE~evvieaY~~l-----R-dr 116 (161)
+.+-||-+..+ --+| |-+ -+.+.+..||++-|+.+||+++ |.. .|+||+|+|++....- | |-
T Consensus 73 GH~RYsTaG~s~~~n~QP--Fvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~ 150 (474)
T KOG0572|consen 73 GHTRYSTAGSSALSNVQP--FVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDA 150 (474)
T ss_pred eeeecccccccccccccc--eEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccC
Confidence 45667765544 1222 433 3568999999999999999886 444 6677777888765421 1 23
Q ss_pred CCCCc--cccccccCcceEEEEEECCCCeEEEEeecc
Q 031346 117 APYPP--NHVVGHLSGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 117 GPypa--dqvv~~L~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
++|++ .++-+.++|.|+.++--. +.|+..||.+
T Consensus 151 ~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~ 185 (474)
T KOG0572|consen 151 PDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPY 185 (474)
T ss_pred ccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCC
Confidence 33443 257889999999888754 4499999965
No 46
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=96.43 E-value=0.014 Score=52.26 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=68.2
Q ss_pred CChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCC---CccccceeeeCCEEEEecceecCHHHHHHHh---CCC-CC-
Q 031346 28 TTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNES---PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KS- 99 (161)
Q Consensus 28 ~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~---~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy---gls-ks- 99 (161)
..+++|.+-|....-..+.-.++ -++.=||-.-.+ .-|| |- +++-||||.|+..+|+.+ +.. ++
T Consensus 176 ~~~~~l~~~y~Dl~~~~~~s~~~-i~H~RysTnt~p~w~~AqP--f~-----~laHNGeInt~~~n~~~l~~r~~~~~~~ 247 (361)
T PF00310_consen 176 GTPEQLAEFYPDLQDEDFKSHFA-IGHQRYSTNTFPSWENAQP--FR-----ALAHNGEINTIRGNRNWLEARGYKLNSP 247 (361)
T ss_dssp C-GGGHHHHCCGGGCTTEEBSEE-EEEEEE-SSSSCSGGGSSS--EE-----EEEEEEEETTHHHHHHHHHHHCCCBSST
T ss_pred cCHHHHHHHHHhhccccccceEE-EEEEecCCCCCCcchhcCh--HH-----HhhhccccccHHHHHHHHHhhcccccCc
Confidence 46677777775533222221111 123334433222 2234 11 888999999999999663 332 43
Q ss_pred ---------------CchHHHHHHHHHHhhhcCCCCcc-----------------------------ccccccCcceEEE
Q 031346 100 ---------------ANEVILVIEAYKALRDRAPYPPN-----------------------------HVVGHLSGYFAFI 135 (161)
Q Consensus 100 ---------------~sE~evvieaY~~lRdrGPypad-----------------------------qvv~~L~GmFAFv 135 (161)
.||++++.++...|-+.| ++.. ++.+.++|-||++
T Consensus 248 ~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g-~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~ 326 (361)
T PF00310_consen 248 LFGDLKELLPIVNPGGSDSEVLDNLLELLLRRG-RSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAII 326 (361)
T ss_dssp TCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTT-SSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEE
T ss_pred cccchhhcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEE
Confidence 889999999888888888 2221 3467799999999
Q ss_pred EEECCCCeEEEEeecc
Q 031346 136 VYDKSTSTLFVASVGL 151 (161)
Q Consensus 136 I~D~~t~~lf~ARDr~ 151 (161)
+-|.. .++++|||.
T Consensus 327 ~~~g~--~~~a~~Dr~ 340 (361)
T PF00310_consen 327 FTDGN--GVGAFLDRN 340 (361)
T ss_dssp EECSS--EEEEEE-TT
T ss_pred EEeCC--EEEEEECCC
Confidence 98764 599999974
No 47
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=91.40 E-value=1.5 Score=37.08 Aligned_cols=71 Identities=21% Similarity=0.241 Sum_probs=48.9
Q ss_pred eeeCCEEEEecceecCHHHHHHHhCC----CCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEE
Q 031346 71 AVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 71 ~~~d~i~cvFnGeIyN~~eLr~qygl----sks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
+..+....-.-|.|||-.-||.-.|. .-.-||+|+++-.|-. -| ...+.--+|.|.|.|=|+ .++|.+
T Consensus 44 ~~~~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~---lG----~~aLsLAEGdfcffiE~k-ng~L~l 115 (201)
T PF09147_consen 44 MRFERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTR---LG----NSALSLAEGDFCFFIEDK-NGELTL 115 (201)
T ss_dssp EEETTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHH---H-----GGGGGG--SSEEEEEEET-TSEEEE
T ss_pred EEecCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHH---hh----hhhhhhhcCceEEEEecC-CCcEEE
Confidence 45566666677999999999977654 3678999999999886 45 679999999999999764 578887
Q ss_pred Eee
Q 031346 147 ASV 149 (161)
Q Consensus 147 ARD 149 (161)
-.|
T Consensus 116 ~Td 118 (201)
T PF09147_consen 116 ITD 118 (201)
T ss_dssp EE-
T ss_pred Eec
Confidence 777
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=88.46 E-value=1.1 Score=38.26 Aligned_cols=74 Identities=16% Similarity=0.316 Sum_probs=44.3
Q ss_pred CCEEEEecceecCHHHHH-HHhCCCCCCchHHHHHHHH-HHhhhcCCC---Ccc-------ccccccC--cceEEEEEEC
Q 031346 74 DEIFCLFEGALDNLGSLR-QQYGLAKSANEVILVIEAY-KALRDRAPY---PPN-------HVVGHLS--GYFAFIVYDK 139 (161)
Q Consensus 74 d~i~cvFnGeIyN~~eLr-~qyglsks~sE~evvieaY-~~lRdrGPy---pad-------qvv~~L~--GmFAFvI~D~ 139 (161)
++++.+.||.|+++..++ ..|- -.++||+|.+.... ..|++.++- ..+ +.+++++ |.+.|++.|-
T Consensus 101 ~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG 179 (271)
T PF13230_consen 101 RRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSDG 179 (271)
T ss_dssp TTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-S
T ss_pred CcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEECC
Confidence 788999999999998877 3343 45556666665553 355665531 111 2234444 7899999996
Q ss_pred CCCeEEEEeec
Q 031346 140 STSTLFVASVG 150 (161)
Q Consensus 140 ~t~~lf~ARDr 150 (161)
..||+-|++
T Consensus 180 --~~l~a~~~~ 188 (271)
T PF13230_consen 180 --ERLFAHRYT 188 (271)
T ss_dssp --S-EEEEEEE
T ss_pred --ceEEEEEcC
Confidence 689999984
No 49
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=62.87 E-value=5.8 Score=28.79 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccc
Q 031346 88 GSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVV 125 (161)
Q Consensus 88 ~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv 125 (161)
.+|.+++|.|+++ |-+.-++||++| ++.+.+-
T Consensus 23 e~La~~LgiSRta-----VwK~Iq~Lr~~G-~~I~s~~ 54 (79)
T COG1654 23 EKLAEELGISRTA-----VWKHIQQLREEG-VDIESVR 54 (79)
T ss_pred HHHHHHHCccHHH-----HHHHHHHHHHhC-CceEecC
Confidence 4788888877653 347778999999 7777443
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=52.67 E-value=30 Score=26.79 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=33.3
Q ss_pred hHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCCCccccc
Q 031346 30 STALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRS 69 (161)
Q Consensus 30 ~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~~l~pr~ 69 (161)
+++.++.++..+.|++++..+..+-+||=+++-...+|.+
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L 41 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL 41 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC
Confidence 6789999999999999999988777999888865555543
No 51
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=45.60 E-value=34 Score=31.43 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=39.8
Q ss_pred CChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCC--------CccccceeeeCCEEEEecceecCHHHHHHHh---CC
Q 031346 28 TTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNES--------PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL 96 (161)
Q Consensus 28 ~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~--------~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy---gl 96 (161)
..+.++.+.|....-..+ -+.+|..|+.-+ .-|| |. +++.||||.|+.--|+-. |.
T Consensus 183 ~~p~~V~~~y~dl~~~~~------~s~~~l~HsRFSTNT~p~W~~AHP--fr-----~lvHNGEInT~~gN~nwm~ar~~ 249 (371)
T COG0067 183 GLPEDVAEFYLDLDDERY------KSAIALVHTRFSTNTFPSWPLAHP--FR-----LLVHNGEINTYGGNRNWLEARGY 249 (371)
T ss_pred cCHHHHHHHHhhccchhh------ceeEEEEEeccCCCCCCCCCccCc--ce-----eeeecceecccccHHHHHHHhhc
Confidence 567777775444332221 134556665433 2244 21 338999999999887443 44
Q ss_pred C-CCCchHHHHHHHH
Q 031346 97 A-KSANEVILVIEAY 110 (161)
Q Consensus 97 s-ks~sE~evvieaY 110 (161)
. ++.+++|++-+.+
T Consensus 250 ~~~s~~~~e~~a~l~ 264 (371)
T COG0067 250 KFESPTDGEVLAKLL 264 (371)
T ss_pred ccccCccHHHHHHHH
Confidence 3 6666666665554
No 52
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=43.32 E-value=51 Score=22.69 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=28.8
Q ss_pred CchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEECCCCeEEEEee
Q 031346 100 ANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASV 149 (161)
Q Consensus 100 ~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D~~t~~lf~ARD 149 (161)
++|.+-+++.++.+|..|- +.. +-=+.||...+++++..|
T Consensus 11 ~~~p~~l~~~lr~~RR~g~------i~~----~vsi~~~~~~~ei~I~tD 50 (63)
T PF04566_consen 11 HSDPEELVKTLRNLRRSGK------ISK----EVSIVYDIREKEIRINTD 50 (63)
T ss_dssp ESSHHHHHHHHHHHHHTTS------S-T----TSEEEEETTTTEEEEE-S
T ss_pred EcCHHHHHHHHHHHhhccC------Ccc----eeEEEEeccCCEEEEEcc
Confidence 3456678899999999882 222 233569999999999999
No 53
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.73 E-value=9.1 Score=28.90 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=30.4
Q ss_pred EEEecceecCHHHHHHHhCCC-CCCchHHHHH-----------------HHHHHhhhcCCCCc
Q 031346 77 FCLFEGALDNLGSLRQQYGLA-KSANEVILVI-----------------EAYKALRDRAPYPP 121 (161)
Q Consensus 77 ~cvFnGeIyN~~eLr~qygls-ks~sE~evvi-----------------eaY~~lRdrGPypa 121 (161)
+++=.||--|..+|-..-|.. +|.-|++-.+ ..|-+||||||.--
T Consensus 15 ~Li~S~e~~nVP~lm~~TGwPRRT~QDvikAlpglgi~l~FvQ~G~Rnn~GyYql~dWGp~~~ 77 (95)
T COG4519 15 YLIDSGETANVPELMAATGWPRRTAQDVIKALPGLGIVLEFVQEGARNNQGYYQLRDWGPVRR 77 (95)
T ss_pred HHHhccccCChHHHHHHcCCchhHHHHHHHhCcCCCeEEEeeecccccCCCceEeeeccchhH
Confidence 345578889999999887876 6666643222 24667889997543
No 54
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=35.36 E-value=31 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=24.3
Q ss_pred cccccCcceEEEEEECCCCeEEEEeecc
Q 031346 124 VVGHLSGYFAFIVYDKSTSTLFVASVGL 151 (161)
Q Consensus 124 vv~~L~GmFAFvI~D~~t~~lf~ARDr~ 151 (161)
+|+++.|.||-++.+.....+.+-|++|
T Consensus 3 ivDRiE~~~AVl~~~~~~~~~~vp~~~L 30 (71)
T PF11213_consen 3 IVDRIEGDYAVLELEDGEKEIDVPRSRL 30 (71)
T ss_pred EEEEEeCCEEEEEECCCeEEEEEEHHHC
Confidence 6899999999999998887888887765
No 55
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=34.00 E-value=71 Score=20.92 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=29.3
Q ss_pred ceec-CHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEE
Q 031346 82 GALD-NLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAF 134 (161)
Q Consensus 82 GeIy-N~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAF 134 (161)
|+.- +..+|.++||.|++ .|-+|++.|-++| ++..-.|.=+|
T Consensus 21 g~~lps~~~la~~~~vsr~-----tvr~al~~L~~~g------~i~~~~~~G~~ 63 (64)
T PF00392_consen 21 GDRLPSERELAERYGVSRT-----TVREALRRLEAEG------LIERRPGRGTF 63 (64)
T ss_dssp TSBE--HHHHHHHHTS-HH-----HHHHHHHHHHHTT------SEEEETTTEEE
T ss_pred CCEeCCHHHHHHHhccCCc-----HHHHHHHHHHHCC------cEEEECCceEE
Confidence 4444 88899999998753 5668999998888 77776665444
No 56
>COG3672 Predicted transglutaminase-like cysteine proteinase [General function prediction only]
Probab=33.49 E-value=80 Score=26.77 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=70.4
Q ss_pred HHHHHhcCCCCcEEEEeCCCeEEEEecCCCCCccccceeeeCCEEEEecceecCHHHHHHHh-CCC---CCCchHHHHHH
Q 031346 33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY-GLA---KSANEVILVIE 108 (161)
Q Consensus 33 l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~~l~pr~F~~~d~i~cvFnGeIyN~~eLr~qy-gls---ks~sE~evvie 108 (161)
---+|-..+|.-+.+.-++...+-.++....-|+.=-..+ +--+.+.=.++||. +++| .+. .+|.| ..+|+
T Consensus 42 gh~~fCqr~~~eC~~~~~~~~~~~Lt~~~~~~L~~VN~~v--N~~i~~~tD~e~~G--~ed~Wa~P~~~~GDCE-Dyal~ 116 (191)
T COG3672 42 GHYDFCQRAPGECAIRSRDTDPVKLTPDRWAELKRVNASV--NTSIKPMTDMEIYG--KEDYWAYPVTGAGDCE-DYALE 116 (191)
T ss_pred HHHHHHhhchhhcCCCCCCCCccccCHHHHHHHHHHHHHH--hccccccchhhhhC--ccccccCCCCCcccHH-HHHHH
Confidence 4477888888766655544443333333222111100001 11122333334444 3443 233 55666 58899
Q ss_pred HHHHhhhcCCCCcc----ccccccCcceEEE----------EEECCCCeEEEEeecccccCcCC
Q 031346 109 AYKALRDRAPYPPN----HVVGHLSGYFAFI----------VYDKSTSTLFVASVGLFNFLPTK 158 (161)
Q Consensus 109 aY~~lRdrGPypad----qvv~~L~GmFAFv----------I~D~~t~~lf~ARDr~~~~~~~~ 158 (161)
-+++|.+.| +|.. -+|+..+|..==| |-|+.+.++....++-+.||+..
T Consensus 117 KRr~L~~~G-~s~~~Llitvvr~~~gegHaVLtVrTd~GD~VLDNl~~~v~~w~~t~y~ylkrQ 179 (191)
T COG3672 117 KRRRLMEAG-VSSSALLITVVRKPDGEGHAVLTVRTDRGDFVLDNLTDKVRPWSDTDYTYLKRQ 179 (191)
T ss_pred HHHHHHHcC-CChhhEEEEEEEcCCCceeEEEEEEcCCCCEEeecCCCccccchhCCCeeEEee
Confidence 999999999 8886 3677778876443 56888888888888888888643
No 57
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=32.65 E-value=97 Score=21.85 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=37.8
Q ss_pred EEEecceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccC-cceEEEEEEC
Q 031346 77 FCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLS-GYFAFIVYDK 139 (161)
Q Consensus 77 ~cvFnGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~-GmFAFvI~D~ 139 (161)
+++..=+|.|+.++...||...++ .++.+....|++.-+ .+.++-++. +.|++++.+.
T Consensus 34 ~~l~~i~i~~~~~i~~~~G~~~~~---~ll~~~a~~l~~~~~--~~~~i~r~~~~~f~il~~~~ 92 (165)
T TIGR00254 34 FSVLMIDIDNFKKINDTLGHDVGD---EVLREVARILQSSVR--GSDVVGRYGGEEFVVILPGT 92 (165)
T ss_pred eEEEEEeccchhHHHHhhChhhHH---HHHHHHHHHHHHhcC--cCCEEEEecCCeEEEEeCCC
Confidence 445567899999999999864322 244555555555442 234666776 5899988654
No 58
>PRK03996 proteasome subunit alpha; Provisional
Probab=29.44 E-value=2.8e+02 Score=22.77 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=45.8
Q ss_pred CCChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCCCc-----cccceeeeCCEEEEecceecCHHHHH
Q 031346 27 KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPL-----RQRSFAVKDEIFCLFEGALDNLGSLR 91 (161)
Q Consensus 27 ~~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~~l-----~pr~F~~~d~i~cvFnGeIyN~~eLr 91 (161)
+..--|-+..-.+.-...|-+...++.+||.-....+.+ .+|.|...++++|.+.|..-....|.
T Consensus 22 r~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 91 (241)
T PRK03996 22 RLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADARVLI 91 (241)
T ss_pred eEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHHHHHH
Confidence 344445666666655578888888888888844433332 36999999999999999866665554
No 59
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=28.16 E-value=34 Score=27.85 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=16.5
Q ss_pred eeeCCEEEEecceecCHHH
Q 031346 71 AVKDEIFCLFEGALDNLGS 89 (161)
Q Consensus 71 ~~~d~i~cvFnGeIyN~~e 89 (161)
|-.||.||+-+|.+||...
T Consensus 79 ~~~dDcW~~i~G~VYnVt~ 97 (145)
T KOG0536|consen 79 NKKDDCWIAIRGKVYNVTA 97 (145)
T ss_pred CCccceEEEEcCEEEeccc
Confidence 5578999999999999864
No 60
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=28.06 E-value=50 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHhhh------c-CCCCccccccc-cCcce
Q 031346 100 ANEVILVIEAYKALRD------R-APYPPNHVVGH-LSGYF 132 (161)
Q Consensus 100 ~sE~evvieaY~~lRd------r-GPypadqvv~~-L~GmF 132 (161)
+-|. +|+-|.+++|+ . ||||+|.+..+ .+|.|
T Consensus 197 ~EE~-iI~PAi~~~~~~~g~~~~~GP~paDt~F~~~~~~~~ 236 (307)
T PRK03946 197 GEEE-EIKKAIKKANQFLGFEIFFGPLVPDSAFTPNKRKKF 236 (307)
T ss_pred cchH-HHHHHHHHHHHhcCCCcccCCcCchhhcccccccCC
Confidence 5566 89999999993 3 99999966543 33444
No 61
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=27.82 E-value=75 Score=27.22 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=40.5
Q ss_pred EEecceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCc-ceEEEEEECC
Q 031346 78 CLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSG-YFAFIVYDKS 140 (161)
Q Consensus 78 cvFnGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~G-mFAFvI~D~~ 140 (161)
.+..=.|.|+.++++.||...+ +| ++.+.-+.|++-.+ .++++-++.| .||+++-|..
T Consensus 280 ~l~~i~id~f~~in~~~G~~~g-d~--~l~~~a~~L~~~~~--~~~~~~R~~~deF~ill~~~~ 338 (407)
T PRK09966 280 ALLFLDGDNFKYINDTWGHATG-DR--VLIEIAKRLAEFGG--LRHKAYRLGGDEFAMVLYDVQ 338 (407)
T ss_pred EEEEEECccchHHHhhhchHHH-HH--HHHHHHHHHHHhCC--CCCEEEEEccceEEEEEcCCC
Confidence 3455688999999999996543 33 56666667766442 3457778876 8999987654
No 62
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=26.55 E-value=80 Score=19.25 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=26.6
Q ss_pred ecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcc
Q 031346 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGY 131 (161)
Q Consensus 84 IyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~Gm 131 (161)
+.+..+|.+.+|.+++ .|-++++.|.+.| ++..-.|.
T Consensus 20 l~s~~~la~~~~vs~~-----tv~~~l~~L~~~g------~i~~~~~~ 56 (60)
T smart00345 20 LPSERELAAQLGVSRT-----TVREALSRLEAEG------LVQRRPGS 56 (60)
T ss_pred CcCHHHHHHHHCCCHH-----HHHHHHHHHHHCC------CEEEecCC
Confidence 4478899999987643 4557888888877 66665554
No 63
>PF05357 Phage_Coat_A: Phage Coat Protein A; InterPro: IPR008021 The G3P protein (also known as attachment protein or coat protein A) of filamentous phage such as M13, phage fd and phage f1, is an essential coat protein for the infection of Escherichia coli. The G3P protein consists of three domains: two N-terminal domains (N1 and N2) with a similar beta-barrel fold, and a C-terminal domain []. The N-terminal domains protrude from the phage surface, while the C-terminal domain acts as an anchor embedded in the phage coat, together forming a horseshoe-like structure []. The G3P protein exists as 3-5 copies at the tip of the phage particle. Infection by filamentous phage involves two distinct cellular receptors, the F' pilus and the periplasmic protein TolA, which are bound sequentially []. The N2 domain binds the F' pilus, causing a conformational change which allows the N1 domain to bind the C-terminal domain of TolA as a co-receptor. This entry represents the two N-terminal domains, N1 and N2, of G3P.; PDB: 1G3P_A 1TOL_A 3KNQ_A 3DGS_A 2G3P_A 1FGP_A 2X9B_B 2X9A_A 4EO1_A.
Probab=26.15 E-value=36 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=17.2
Q ss_pred ccceeeeCCEEEEecceecCH
Q 031346 67 QRSFAVKDEIFCLFEGALDNL 87 (161)
Q Consensus 67 pr~F~~~d~i~cvFnGeIyN~ 87 (161)
+..|-.+++.|..|+|.||++
T Consensus 36 ~N~~k~~~~ry~n~~Gc~y~a 56 (63)
T PF05357_consen 36 SNVFKFDNTRYANYEGCIYEA 56 (63)
T ss_dssp SS-EEETTEEEEEETTEEEEE
T ss_pred cceeecCCceEEEecCeEEEE
Confidence 467778888999999999975
No 64
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=25.82 E-value=1e+02 Score=28.15 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCchHHHHHHHHHHhhhc-----CCCCccccccc
Q 031346 99 SANEVILVIEAYKALRDR-----APYPPNHVVGH 127 (161)
Q Consensus 99 s~sE~evvieaY~~lRdr-----GPypadqvv~~ 127 (161)
++-|.++|+-+-..+|.. ||+|+|-+...
T Consensus 220 G~EE~diI~Paie~aR~~Gi~~~GPlpADT~F~~ 253 (332)
T COG1995 220 GREEIDIIIPAIEEARAEGIDLVGPLPADTLFHP 253 (332)
T ss_pred CchhHHHHHHHHHHHHHhCCcccCCCCcchhhhh
Confidence 566777888898888874 79999966543
No 65
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=25.10 E-value=2.3e+02 Score=30.74 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=65.2
Q ss_pred CChHHHHHHHhcCCCCcEEEEeCCCeEEEEecCCCC----CccccceeeeCCEEEEecceecCHHHHH-----HHhCC--
Q 031346 28 TTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNES----PLRQRSFAVKDEIFCLFEGALDNLGSLR-----QQYGL-- 96 (161)
Q Consensus 28 ~~~~~l~~~F~~~~~~a~s~~~g~~~~lAys~~~~~----~l~pr~F~~~d~i~cvFnGeIyN~~eLr-----~qygl-- 96 (161)
..+++|.+-|....-..+. +.+|..|+.-| |.-+| +----+++.||||.-+.--| +++-+
T Consensus 193 l~~~ql~~fY~DL~d~~~~------s~~al~HsRFSTNT~PsW~~---AqPFR~laHNGEINTi~gN~nwm~are~~l~s 263 (1485)
T PRK11750 193 MMPADLPRFYLDLADLRLE------SAICVFHQRFSTNTLPRWPL---AQPFRYLAHNGEINTITGNRQWARARAYKFQT 263 (1485)
T ss_pred ccHHHHHHhhhhhCCccee------EEEEEEECcCCCCCCCCCCc---CCCceeeeeccccccHHHHHHHHHHHHHhccC
Confidence 5678888888865433332 23455555422 21111 11122468999998665544 22211
Q ss_pred -------------CCCCchHHHHHHHHHHhhhcCCCCcc-----------------------------ccccccCcceEE
Q 031346 97 -------------AKSANEVILVIEAYKALRDRAPYPPN-----------------------------HVVGHLSGYFAF 134 (161)
Q Consensus 97 -------------sks~sE~evvieaY~~lRdrGPypad-----------------------------qvv~~L~GmFAF 134 (161)
..+.||++++=.+.+-|-..| .+.. .+.+-++|-||+
T Consensus 264 ~~~~~~~~~~Pii~~~~SDSa~lDn~lElL~~~G-~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaai 342 (1485)
T PRK11750 264 PLIPDLQEAAPFVNETGSDSSSLDNMLELLLAGG-MDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGI 342 (1485)
T ss_pred CCcchHHhhCCcCCCCCChHHHHHHHHHHHHHcC-CCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEE
Confidence 245567667666555554444 2221 245557999999
Q ss_pred EEEECCCCeEEEEeecc
Q 031346 135 IVYDKSTSTLFVASVGL 151 (161)
Q Consensus 135 vI~D~~t~~lf~ARDr~ 151 (161)
++-|. +.+.+.|||.
T Consensus 343 v~~~g--~~i~A~~Drn 357 (1485)
T PRK11750 343 VMTDG--RYAACNLDRN 357 (1485)
T ss_pred EEEeC--CEEEEecCCC
Confidence 99995 8999999984
No 66
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.02 E-value=40 Score=22.30 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=19.5
Q ss_pred cCcceEEEEEECCCCeEEEEeecccccCc
Q 031346 128 LSGYFAFIVYDKSTSTLFVASVGLFNFLP 156 (161)
Q Consensus 128 L~GmFAFvI~D~~t~~lf~ARDr~~~~~~ 156 (161)
-+.-|+|++.|.....+|+..+.+-+-+.
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A~~ 34 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGAMD 34 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS-T
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCCCC
Confidence 35679999999989999999887655443
No 67
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=24.60 E-value=47 Score=25.72 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=19.6
Q ss_pred eeCCEEEEecceecCHHHHHHHh
Q 031346 72 VKDEIFCLFEGALDNLGSLRQQY 94 (161)
Q Consensus 72 ~~d~i~cvFnGeIyN~~eLr~qy 94 (161)
..+|.|++.+|.+||....-.+.
T Consensus 17 ~~~d~Wvii~gkVYDvT~Fl~eH 39 (124)
T KOG0537|consen 17 KKDDCWVIIHGKVYDVTSFLDEH 39 (124)
T ss_pred CCCCeEEEECCEEEeccchhhhC
Confidence 45889999999999998887664
No 68
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=23.41 E-value=80 Score=28.46 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCchHHHHHHHHHHhhhc-----CCCCccccccc-cCcceE
Q 031346 99 SANEVILVIEAYKALRDR-----APYPPNHVVGH-LSGYFA 133 (161)
Q Consensus 99 s~sE~evvieaY~~lRdr-----GPypadqvv~~-L~GmFA 133 (161)
++-|.++|+-|-+.+|+. ||||+|.+..+ ..|.|=
T Consensus 217 G~EE~~iI~PAi~~~~~~Gi~v~GP~paDt~F~~~~~~~~D 257 (329)
T PRK01909 217 GREEIDVIEPALARARAAGIDARGPYPADTLFQPRYLEDAD 257 (329)
T ss_pred cHHHHHHHHHHHHHHHHCCCCccCCCCchhhcccccccCCC
Confidence 366888999899988754 79999966544 345443
No 69
>PF08892 YqcI_YcgG: YqcI/YcgG family; InterPro: IPR014988 This group of proteins are functionally uncharacterised. They include YqcI and YcgG from Bacillus subtilis. The alignment contains a conserved FPC motif at the N terminus and CPF at the C terminus.
Probab=23.30 E-value=1.4e+02 Score=25.09 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=26.8
Q ss_pred CcEEEEeCCCeEEEEe-cCCCCCccccceeeeCCEEEEec
Q 031346 43 SAVSVQVGDNVTLAYT-HQNESPLRQRSFAVKDEIFCLFE 81 (161)
Q Consensus 43 ~a~s~~~g~~~~lAys-~~~~~~l~pr~F~~~d~i~cvFn 81 (161)
..++++||+-.+-... ++.....+-|.|.. +.++||
T Consensus 114 p~wsFsF~Gep~Fvv~~~P~~~~R~SR~~~~---~~lvFq 150 (219)
T PF08892_consen 114 PNWSFSFGGEPFFVVGLHPAHASRKSRRFPN---PMLVFQ 150 (219)
T ss_pred CCEEEEECCeeEEEEecCCcccccccccCCC---CEEEEC
Confidence 4789999776655554 44447888899866 899987
No 70
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=23.22 E-value=1.1e+02 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.4
Q ss_pred ccccccCcceEEEEEECCCCeEEEEe
Q 031346 123 HVVGHLSGYFAFIVYDKSTSTLFVAS 148 (161)
Q Consensus 123 qvv~~L~GmFAFvI~D~~t~~lf~AR 148 (161)
+.+-.++|.||-+.||..+++|...|
T Consensus 102 ~~l~~~~~~ya~lf~D~~~n~v~air 127 (141)
T PF14504_consen 102 RPLVKFDGIYAQLFYDQHTNKVTAIR 127 (141)
T ss_pred ceeEEeCCEEEEEEEEccCCEEEEEE
Confidence 36667799999999999999998776
No 71
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=22.91 E-value=85 Score=22.46 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=21.9
Q ss_pred HHHHHHHhhhcCCCCc---------cccccccCcceEEEEEECCCCeEEEE
Q 031346 106 VIEAYKALRDRAPYPP---------NHVVGHLSGYFAFIVYDKSTSTLFVA 147 (161)
Q Consensus 106 vieaY~~lRdrGPypa---------dqvv~~L~GmFAFvI~D~~t~~lf~A 147 (161)
+||.|- +||..-|+. .||.+.|+--=|.++||..+.++=+.
T Consensus 16 LIeefv-~ReGTdyG~~E~sL~~kv~qv~~qL~~G~avI~~se~~es~~I~ 65 (70)
T PF06794_consen 16 LIEEFV-LREGTDYGEQELSLEEKVEQVKQQLKSGEAVIVFSELHESVNIV 65 (70)
T ss_dssp HHHHHH-H------------HHHHHHHHHHHHHTTSEEEEE-TTT--EEEE
T ss_pred HHHHHH-HccCcccCcccccHHHHHHHHHHHHHcCCEEEEECCccCeecCe
Confidence 466666 566666665 37777787777999999998887543
No 72
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=22.82 E-value=81 Score=28.72 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCchHHHHHHHHHHhhhcC-------CCCcccccccc
Q 031346 99 SANEVILVIEAYKALRDRA-------PYPPNHVVGHL 128 (161)
Q Consensus 99 s~sE~evvieaY~~lRdrG-------Pypadqvv~~L 128 (161)
++-|.++|+-|.+.+|..| |+|+|.+..+-
T Consensus 224 G~EE~~iI~PAIe~~r~~g~g~~v~GP~paDt~F~~~ 260 (345)
T PRK02746 224 GTEEKDWLIPWLESWRQKNPDIQLLGPIPPDTCWVSP 260 (345)
T ss_pred cHHHHHHHHHHHHHHHhcCCCceeeCCCCchhhcccc
Confidence 4678889999999888775 99999776553
No 73
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=22.34 E-value=2e+02 Score=17.73 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=26.9
Q ss_pred ecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcce
Q 031346 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYF 132 (161)
Q Consensus 84 IyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmF 132 (161)
+.+..+|.+.+|.++ ..|-+++..|.+.| +|..-+|..
T Consensus 25 ~~~~~~la~~~~is~-----~~v~~~l~~L~~~G------~i~~~~~~~ 62 (66)
T cd07377 25 LPSERELAEELGVSR-----TTVREALRELEAEG------LVERRPGRG 62 (66)
T ss_pred CCCHHHHHHHHCCCH-----HHHHHHHHHHHHCC------CEEecCCCe
Confidence 446889999998764 25567888888888 566555553
No 74
>cd02056 alpha-1-antitrypsin_like alpha-1-antitrypsin_like. This family contains a variety of different members of clade A of the serpin superfamily. They include the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and noninhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=22.17 E-value=94 Score=26.75 Aligned_cols=21 Identities=24% Similarity=0.700 Sum_probs=16.3
Q ss_pred cCcceEEEEEECCCCe-EEEEe
Q 031346 128 LSGYFAFIVYDKSTST-LFVAS 148 (161)
Q Consensus 128 L~GmFAFvI~D~~t~~-lf~AR 148 (161)
.+=-|.|+|+|+.|+. ||+.|
T Consensus 339 ~drPF~f~I~~~~t~~iLF~G~ 360 (361)
T cd02056 339 FNRPFLLLIFDRTTESILFLGK 360 (361)
T ss_pred EeCCEEEEEEECCCCcEEEEEe
Confidence 4568999999998876 66654
No 75
>PHA00370 III attachment protein
Probab=21.63 E-value=68 Score=28.76 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=22.6
Q ss_pred EecCCCC-------Cccccceeee----C-CEEEEecceecCHHH
Q 031346 57 YTHQNES-------PLRQRSFAVK----D-EIFCLFEGALDNLGS 89 (161)
Q Consensus 57 ys~~~~~-------~l~pr~F~~~----d-~i~cvFnGeIyN~~e 89 (161)
|||+.++ |....+|..+ + +.|..|+|+||+..-
T Consensus 15 ~t~~~~~eE~ClaKP~~~g~~sNv~k~d~~~~Yan~eGC~Y~AtG 59 (297)
T PHA00370 15 YTHEQTPEEICLAKPPIDGVFNNVWKGDEGGRYANYEGCEYEATG 59 (297)
T ss_pred ccCCCCcHHHHhcCCcccccccceeecCCCceEEEecCeEEEeee
Confidence 5566544 4555666554 4 589999999998653
No 76
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=21.22 E-value=1.7e+02 Score=22.91 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=33.2
Q ss_pred cceecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEE
Q 031346 81 EGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIV 136 (161)
Q Consensus 81 nGeIyN~~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI 136 (161)
-|+.-+-.+|.++||.|++ .|=||.+.|...| +|....|.=++|.
T Consensus 31 pG~~L~e~~La~~lgVSRt-----pVReAL~~L~~eG------lv~~~~~~G~~V~ 75 (212)
T TIGR03338 31 PGAKLNESDIAARLGVSRG-----PVREAFRALEEAG------LVRNEKNRGVFVR 75 (212)
T ss_pred CCCEecHHHHHHHhCCChH-----HHHHHHHHHHHCC------CEEEecCCCeEEe
Confidence 3666688899999999865 4557888888777 7777777655553
No 77
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=21.14 E-value=1.1e+02 Score=24.04 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCccccccccCcceEEEEEE
Q 031346 88 GSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYD 138 (161)
Q Consensus 88 ~eLr~qyglsks~sE~evvieaY~~lRdrGPypadqvv~~L~GmFAFvI~D 138 (161)
.+|..+.|.+-. .|=.||+.|.+-| +|.-.+|+-.||==|
T Consensus 39 RelA~~~~VNpn-----Tv~raY~eLE~eG------~i~t~rg~G~fV~~~ 78 (125)
T COG1725 39 RELAKDLGVNPN-----TVQRAYQELEREG------IVETKRGKGTFVTED 78 (125)
T ss_pred HHHHHHhCCCHH-----HHHHHHHHHHHCC------CEEEecCeeEEEcCC
Confidence 445555665532 3458999999988 899999999888544
No 78
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.00 E-value=2.4e+02 Score=21.78 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=35.1
Q ss_pred cEEEEeCCCeEEEEecCCCC------CccccceeeeCCEEEEecceecCHHHHHH
Q 031346 44 AVSVQVGDNVTLAYTHQNES------PLRQRSFAVKDEIFCLFEGALDNLGSLRQ 92 (161)
Q Consensus 44 a~s~~~g~~~~lAys~~~~~------~l~pr~F~~~d~i~cvFnGeIyN~~eLr~ 92 (161)
.+.+...++.+||-...... .-.+|.|...++++|.+.|..-....|.+
T Consensus 3 ~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 57 (189)
T cd01912 3 IVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTR 57 (189)
T ss_pred EEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHH
Confidence 34566677777876543322 34568999999999999999877776664
No 79
>cd02054 angiotensinogen Angiotensinogen is part of the renin-angiotensin system (RAS), which plays an important role in blood pressure regulation, renal haemodynamics, fluid and electrolyte homeostasis. It is also involved in normal and abnormal growth processes. The growth promoting actions of angiotensin have been shown in a variety of cells and tissues. This subgroup represents clade A8 of the serpin superfamily. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=20.93 E-value=1e+02 Score=27.09 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=17.7
Q ss_pred ccCcceEEEEEECCCCe-EEEEe
Q 031346 127 HLSGYFAFIVYDKSTST-LFVAS 148 (161)
Q Consensus 127 ~L~GmFAFvI~D~~t~~-lf~AR 148 (161)
..+=-|.|+|+|..|+. ||+.|
T Consensus 346 ~~drPF~f~I~d~~t~~iLF~G~ 368 (372)
T cd02054 346 TLNRPFLFAVYEANSNAILFLGR 368 (372)
T ss_pred EecCCEEEEEEECCCCcEEEEEE
Confidence 46778999999999876 57766
No 80
>PRK04966 hypothetical protein; Provisional
Probab=20.71 E-value=97 Score=22.38 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCCCCc---------cccccccCcceEEEEEECCCCeEEE
Q 031346 106 VIEAYKALRDRAPYPP---------NHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 106 vieaY~~lRdrGPypa---------dqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
+||.|- +||+--|+. +||.+.|.--=|.++||..+.++=+
T Consensus 16 LIeefv-~ReGTdyG~~E~sl~~kv~qv~~qL~~G~~viv~se~~ESv~I 64 (72)
T PRK04966 16 LIESFV-LREGTDYGEHERSLEQKVADVKRQLQSGEAVLVWSELHETVNI 64 (72)
T ss_pred HHHHHH-hccCccCCcccccHHHHHHHHHHHHHcCCEEEEECCCCCeeee
Confidence 456655 466655655 4788888888899999999888743
No 81
>PRK00304 hypothetical protein; Provisional
Probab=20.32 E-value=98 Score=22.57 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=28.5
Q ss_pred HHHHHHHhhhcCCCCc--------cccccccCcceEEEEEECCCCeEEE
Q 031346 106 VIEAYKALRDRAPYPP--------NHVVGHLSGYFAFIVYDKSTSTLFV 146 (161)
Q Consensus 106 vieaY~~lRdrGPypa--------dqvv~~L~GmFAFvI~D~~t~~lf~ 146 (161)
+||.|-+ ||..-|+. +||.+.|.--=|.++||..+.++=+
T Consensus 16 LIeefv~-ReGTDyg~E~sL~~kv~qv~~qL~~G~~vIvfse~~es~~i 63 (75)
T PRK00304 16 LIEDFVT-RDGTDNGDETPLETRVLRVRQALTKGQAVILFDPESQQCQL 63 (75)
T ss_pred HHHHHHh-ccCccCcccccHHHHHHHHHHHHHcCCEEEEECCCcceeee
Confidence 4555553 66665554 3777788777799999999988744
No 82
>PF11681 DUF3277: Protein of unknown function (DUF3277); InterPro: IPR021695 This entry is represented by Bacteriophage rv5, Orf52. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins represents a putative bacteriophage protein. No function is currently known.
Probab=20.16 E-value=2.2e+02 Score=23.00 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=30.0
Q ss_pred cccccCcceEEEEEECCCCeEEEEeecccccCcCC
Q 031346 124 VVGHLSGYFAFIVYDKSTSTLFVASVGLFNFLPTK 158 (161)
Q Consensus 124 vv~~L~GmFAFvI~D~~t~~lf~ARDr~~~~~~~~ 158 (161)
.-..+-|.+-|.|.|...+.++.||...|.=.|..
T Consensus 87 ~s~~~~g~~~i~i~d~~~gd~~ta~~~~f~K~Pd~ 121 (146)
T PF11681_consen 87 QSSSLWGPNTITIRDLASGDVITARSCAFQKQPDL 121 (146)
T ss_pred hhhcccCceEEEEEcCCCCcEEEEEEEEEEeCCCc
Confidence 34468899999999999999999999999777754
No 83
>cd02049 bacterial_SERPIN SERine Proteinase INhibitors (serpins), prokaryotic subgroup. Little information about specific functions is available for this subgroup, most likely they are inhibitory members of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors.
Probab=20.02 E-value=1.1e+02 Score=26.39 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=16.6
Q ss_pred ccCcceEEEEEECCCCe-EEEEe
Q 031346 127 HLSGYFAFIVYDKSTST-LFVAS 148 (161)
Q Consensus 127 ~L~GmFAFvI~D~~t~~-lf~AR 148 (161)
..+--|.|+|+|..++. ||+.|
T Consensus 341 ~~nrPF~f~I~d~~t~~iLF~G~ 363 (364)
T cd02049 341 VADRPFLFAIRDNRTGSILFMGA 363 (364)
T ss_pred EeeCCEEEEEEECCCCcEEEEEe
Confidence 34567999999999875 57665
Done!