BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031347
MAGAKLCGGDTAFLLRSHSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVK
RSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCD
LKSHSAIERLRRIKNVEPSKVRKIASHIFSIFIIWRLMQKA

High Scoring Gene Products

Symbol, full name Information P value
AT3G01920 protein from Arabidopsis thaliana 1.5e-33
PSPTO_1811
Sua5/YciO/YrdC/YwlC family protein 		protein from Pseudomonas syringae pv. tomato str. DC3000 0.00051

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031347
        (161 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2078668 - symbol:AT3G01920 species:3702 "Arabi...   365  1.5e-33   1
UNIPROTKB|Q885M0 - symbol:PSPTO_1811 "Sua5/YciO/YrdC/YwlC...   101  0.00051   1


>TAIR|locus:2078668 [details] [associations]
            symbol:AT3G01920 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
            PROSITE:PS51163 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AC010797 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
            eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 UniGene:At.48610
            UniGene:At.41213 EMBL:AY079025 EMBL:AY143853 IPI:IPI00545644
            RefSeq:NP_566156.2 HSSP:P45847 ProteinModelPortal:Q9SGI3 SMR:Q9SGI3
            IntAct:Q9SGI3 STRING:Q9SGI3 PRIDE:Q9SGI3 EnsemblPlants:AT3G01920.1
            GeneID:821220 KEGG:ath:AT3G01920 TAIR:At3g01920
            HOGENOM:HOG000265231 InParanoid:Q9SGI3 OMA:LTLMCRD PhylomeDB:Q9SGI3
            ProtClustDB:CLSN2690515 Genevestigator:Q9SGI3 Uniprot:Q9SGI3
        Length = 307

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 80/140 (57%), Positives = 97/140 (69%)

Query:     1 MAGAKLCGGDTAFLLRXXXXXXXXFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVK 60
             MA AKL GG  A  +R              RR +  P   +S+SP     RY I+A+  K
Sbjct:     1 MAVAKLHGGGMA-AMRLLLLPS----PMTHRRPSTLPS-TASLSPR----RY-IVALAAK 49

Query:    61 RSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCD 120
             RSPKRLKYS P+FTKEG L+Y+E DP G DSWKL+PV++LLK+GAVGVIPTDT+YAI CD
Sbjct:    50 RSPKRLKYSTPRFTKEGELVYIEVDPCGVDSWKLQPVIDLLKQGAVGVIPTDTVYAIACD 109

Query:   121 LKSHSAIERLRRIKNVEPSK 140
              K+HSA+ERLRRIK +E SK
Sbjct:   110 CKNHSAVERLRRIKKIESSK 129


>UNIPROTKB|Q885M0 [details] [associations]
            symbol:PSPTO_1811 "Sua5/YciO/YrdC/YwlC family protein"
            species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
            PROSITE:PS51163 EMBL:AE016853 GenomeReviews:AE016853_GR
            Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
            eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847
            HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_791636.1
            ProteinModelPortal:Q885M0 SMR:Q885M0 GeneID:1183452
            KEGG:pst:PSPTO_1811 PATRIC:19994886 ProtClustDB:CLSK867809
            BioCyc:PSYR223283:GJIX-1846-MONOMER Uniprot:Q885M0
        Length = 209

 Score = 101 (40.6 bits), Expect = 0.00051, P = 0.00051
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query:    81 YVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVE 137
             + +  P       ++   E++K G + V PTD+ YA+ C +   SAIER+RR++ ++
Sbjct:     4 FFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLD 60


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       153   0.00081  105 3  11 22  0.45    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  137 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.70u 0.08s 16.78t   Elapsed:  00:00:02
  Total cpu time:  16.70u 0.08s 16.78t   Elapsed:  00:00:02
  Start:  Fri May 10 22:26:58 2013   End:  Fri May 10 22:27:00 2013

Back to top