BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031347
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1
Length = 206
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNV 136
P + VE++++G V V PTD+ YA+ C ++ +A ER+ RI+ +
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQL 59
>pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio
Length = 221
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNV 136
P + VE++++G V V PTD+ YA+ C ++ +A ER+ RI+ +
Sbjct: 24 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQL 74
>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
Methanobacterium Thermoautotrophicum
Length = 208
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 94 LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 140
LE + +++ G + + PTDT+Y + + A+ RL R+K P K
Sbjct: 16 LEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHK 62
>pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli
pdb|1HRU|B Chain B, The Structure Of The Yrdc Gene Product From E.Coli
Length = 188
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 98 VELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKN 135
+++L E V PT+ ++ + CD S +A+ RL +K
Sbjct: 14 IDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQ 51
>pdb|2DZU|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZU|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|2DZP|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZP|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|2DZV|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZV|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|2DZT|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZT|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|2E09|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2E09|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|2DZW|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZW|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|2DZS|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZS|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|2DZX|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
pdb|2DZX|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1WDW|A Chain A, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|C Chain C, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|E Chain E, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|G Chain G, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|I Chain I, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|K Chain K, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
K E VV LLKEGA GV+ L I+ + K A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLY--AIVCDLKSHSAIERLRRIKNV 136
L+Y++AD + D + E ++LL+EG G+I D + V D ++ S +L R+ N
Sbjct: 143 LIYIDADKANTDLY-YEESLKLLREG--GLIAVDNVLRRGQVADEENQSENNQLIRLFNQ 199
Query: 137 EPSKVRKI 144
+ K ++
Sbjct: 200 KVYKDERV 207
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 43 VSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLK 102
VS P ILA K S RL VE D G WKL + EL
Sbjct: 49 VSSTWNPLDESILAYGEKNSVARLA------------RIVETDQEGKKYWKLTIIAELRH 96
Query: 103 EGAVGVIPTDTLYAIVCDLKSHSAIERLRRIKNVE 137
A+ T + C SH + ++N E
Sbjct: 97 PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGE 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,460,396
Number of Sequences: 62578
Number of extensions: 169110
Number of successful extensions: 420
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 18
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)